Query psy1968
Match_columns 215
No_of_seqs 86 out of 104
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:50:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fgq_A Periplasmic protein; DU 94.3 0.025 8.7E-07 48.1 3.3 52 160-212 48-99 (193)
2 3kd4_A Putative protease; stru 93.5 0.026 9E-07 52.4 2.0 52 159-211 248-299 (506)
3 3isr_A Transglutaminase-like e 90.3 0.15 5.1E-06 44.8 2.8 48 158-210 145-192 (293)
4 2f4m_A Peptide N-glycanase; gl 66.1 2.2 7.4E-05 38.2 1.6 88 103-211 60-155 (295)
5 1x3z_A Peptide: N-glycanase; h 46.7 6.8 0.00023 35.8 1.4 91 102-212 97-197 (335)
6 1g0d_A Protein-glutamine gamma 29.9 30 0.001 34.4 3.0 54 158-211 211-284 (695)
7 1ex0_A Coagulation factor XIII 28.2 34 0.0012 34.2 3.1 56 155-210 251-325 (731)
8 2q3z_A Transglutaminase 2; tra 24.7 56 0.0019 32.4 3.9 31 180-210 249-288 (687)
9 2ija_A Arylamine N-acetyltrans 17.7 47 0.0016 28.6 1.6 43 169-212 39-86 (295)
10 1w5r_A Arylamine N-acetyltrans 17.5 45 0.0015 28.6 1.4 44 169-212 38-86 (278)
No 1
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=94.34 E-value=0.025 Score=48.12 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=38.0
Q ss_pred hhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhhh
Q psy1968 160 SGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLV 212 (215)
Q Consensus 160 ~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlG 212 (215)
...-+||- -|.|..=..--+..++|.+|..+|....|||.|+|++--.+|+.
T Consensus 48 ~~VN~~vN-~i~~~~D~~~~G~~DyWatP~E~l~~g~GDCEDyaI~K~~~L~~ 99 (193)
T 4fgq_A 48 EKVNSFFN-QFNYETDPITGASDDYWKSPVEFIVDGGGDCEDFAIIKYFTLVA 99 (193)
T ss_dssp HHHHHHHH-TSEECCCTTTSSCCSSCCCHHHHHHHTEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcccccchhhcCCCCcCCCcHhHhCCCCcCcHHHHHHHHHHHHH
Confidence 34445665 44443322224557999999999999999999999998888864
No 2
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=93.49 E-value=0.026 Score=52.45 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred hhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhh
Q psy1968 159 WSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211 (215)
Q Consensus 159 ~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLl 211 (215)
-+.+-+||.+-+.|.+...-.. .-.-.++..+|+.+.|||.|+|+||++||=
T Consensus 248 ~~~iy~~V~~~i~y~~~~~~~~-g~~~~~a~~vl~~~~G~C~d~a~Ll~AllR 299 (506)
T 3kd4_A 248 VNIIRDHILNNLSTCPIPMAMT-GYTVRDIDTVLRSAYGTPLEIAQLLNVMLN 299 (506)
T ss_dssp HHHHHHHHHHHCEECCCCGGGG-TTCCCCHHHHHHHTEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccEecceecccC-CCCCCCHHHHHHhCCcchHHHHHHHHHHHH
Confidence 3456669999999986532111 112357999999999999999999999984
No 3
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=90.27 E-value=0.15 Score=44.79 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=39.3
Q ss_pred ChhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhh
Q psy1968 158 SWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210 (215)
Q Consensus 158 ~~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLL 210 (215)
-...+.+||.+-+.|.+-..+ .-.++..+|..++|.|-|+|.|+++||
T Consensus 145 ~~~ai~~~v~~~~~Y~~~~~~-----~~~~a~~~l~~~~G~C~d~A~l~val~ 192 (293)
T 3isr_A 145 KVLAITDWIYNNVEYISGSTN-----SQTSAFDTITERAGVCRDFAHLGIALC 192 (293)
T ss_dssp HHHHHHHHHHHHSEECTTSCC-----TTCCHHHHHHHCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcEEeccCCC-----CCCCHHHhhcCCcEehHHHHHHHHHHH
Confidence 356778899999999875332 224788999999999999999999997
No 4
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=66.11 E-value=2.2 Score=38.17 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccee-cCcccCCcceeeee-eeccCC------CCccccChhhHHHHhhccccccc
Q psy1968 103 KEKLLIWYCENFRRQYSSRYPLRRPLVMA-LENECGVQKMVCTS-INVTRF------PLVEFKSWSGCASFVSDHIVYEP 174 (215)
Q Consensus 103 KE~llL~yAenF~rQF~~lyPdRRpL~L~-p~NECGV~KFVCTT-IRPT~L------py~ELy~~~~cA~FVSd~L~YEp 174 (215)
.+.++.+...=|+++|-... +. |..-||-+....-. .+||.= .=-|.|--..| .+.+
T Consensus 60 ~~~~~~~ll~wFk~~fF~~~-------~~P~c~~C~~~~~~~g~~~~~~~~e~~~~a~~vE~y~c~~c-----~~~~--- 124 (295)
T 2f4m_A 60 EDFLLLELLHWFKEEFFRWV-------NNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDAC-----QLSN--- 124 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEC-------SSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTT-----TEEE---
T ss_pred HHHHHHHHHHHHHhcCCEEe-------CCCCCcccCCcccccCCCCCCChhHhhcccchhheeecccc-----Ccee---
Confidence 66677777777777765432 22 23457766544322 344421 11122221222 1121
Q ss_pred CCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhh
Q psy1968 175 LDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211 (215)
Q Consensus 175 Le~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLl 211 (215)
.+| ...+|..++..++|.|.|+|.|.++||=
T Consensus 125 -----~~p-r~~~~~~~l~~r~G~C~d~A~lf~al~R 155 (295)
T 2f4m_A 125 -----RFP-RYNNPEKLLETRCGRCGEWANCFTLCCR 155 (295)
T ss_dssp -----EEE-CCCCHHHHHHHCEESHHHHHHHHHHHHH
T ss_pred -----ecC-CCCCHHHHHHcCCEeeHHHHHHHHHHHH
Confidence 223 3468999999999999999999999873
No 5
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=46.72 E-value=6.8 Score=35.77 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcceecCcccCCcc--ee--eeeeeccCC------CCccccChhhHHHHhhcccc
Q psy1968 102 DKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQK--MV--CTSINVTRF------PLVEFKSWSGCASFVSDHIV 171 (215)
Q Consensus 102 ~KE~llL~yAenF~rQF~~lyPdRRpL~L~p~NECGV~K--FV--CTTIRPT~L------py~ELy~~~~cA~FVSd~L~ 171 (215)
..+.++++...=|+++|-+.. -+ -|..-||-+. .. .-+..||.- .=-|+|--..|...
T Consensus 97 ~~d~ll~~LL~WFk~~fF~wv--n~----p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~------ 164 (335)
T 1x3z_A 97 YTDYLVKELLRYFKQDFFKWC--NK----PDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNI------ 164 (335)
T ss_dssp HHHHHHHHHHHHHHHTTCEEC--SS----CCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCE------
T ss_pred hhHHHHHHHHHHHHhcCCEee--CC----CCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcc------
Confidence 366677777778888865433 11 2456688653 22 245666641 11344433334332
Q ss_pred cccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhhh
Q psy1968 172 YEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLV 212 (215)
Q Consensus 172 YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlG 212 (215)
+.+| .-.+|..+|..++|.|.|+|.+.+.+|=+
T Consensus 165 -------~rFP-RYn~~~~ll~tr~G~C~e~A~lF~~llRa 197 (335)
T 1x3z_A 165 -------TRFP-RYNDPIKLLETRKGRCGEWCNLFTLILKS 197 (335)
T ss_dssp -------EEEE-EECCHHHHHHHCEECHHHHHHHHHHHHHT
T ss_pred -------cccC-CcCCHHHHHHhCCcChHHHHHHHHHHHHH
Confidence 3455 44789999999999999999999998844
No 6
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=29.89 E-value=30 Score=34.44 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=35.9
Q ss_pred ChhhHHHHhhccccccc----C-------CCCCCCCccccChhhHh----hcc-c----CCcchhhHHHHHhhh
Q psy1968 158 SWSGCASFVSDHIVYEP----L-------DHPTNLPVRLRSPSTVF----NGQ-S----GHCFELSTLLVSLLL 211 (215)
Q Consensus 158 ~~~~cA~FVSd~L~YEp----L-------e~P~~~P~~l~SPtt~L----~~Q-k----GnCFD~S~LLCSLLl 211 (215)
++-..++-++..+.-.- | -..+..|..|.....+| +.+ + |.|.+||.++|++|=
T Consensus 211 dpv~v~r~lsa~vn~~dD~gvl~g~W~~~y~~g~~P~~w~gs~~il~~~~~~~~~PV~~G~C~~fA~v~~t~lR 284 (695)
T 1g0d_A 211 DPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQQWSKAGVRPVKYGQCWVFAAVACTVLR 284 (695)
T ss_dssp CHHHHHHHHHHHHTTCTTTCSEEECCSSCCTTSCCGGGCSBSHHHHHHHHHTTSCCEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccCcCceeecccccccCCCcCCcccCChHHHHHHHHHcCCCcccceeeHHHHHHHHHHHH
Confidence 45566667776554431 1 12234578888777776 434 3 999999999999873
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=28.23 E-value=34 Score=34.21 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=40.2
Q ss_pred cccChhhHHHHhhccccccc-----------CCCCCCCCccccChhhHhh----ccc----CCcchhhHHHHHhh
Q psy1968 155 EFKSWSGCASFVSDHIVYEP-----------LDHPTNLPVRLRSPSTVFN----GQS----GHCFELSTLLVSLL 210 (215)
Q Consensus 155 ELy~~~~cA~FVSd~L~YEp-----------Le~P~~~P~~l~SPtt~L~----~Qk----GnCFD~S~LLCSLL 210 (215)
.=-++-..++.++..+.-.. --..+.-|..|.....+|+ .++ |.|.+||.++|.+|
T Consensus 251 ~r~dpv~v~r~lsa~vn~~dD~GVL~GnW~~~y~~g~~P~~~~gs~~il~~~~~~~~PV~~G~C~~fA~v~~~~l 325 (731)
T 1ex0_A 251 GRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNTFL 325 (731)
T ss_dssp GTTCHHHHHHHHHHHHBCSTTCSSEEECCSSCCTTSCCGGGCCBSHHHHHHHHHHTSCEEEECHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhcCCcCceeecccccccCCCcCCcccCChHHHHHHHHhcCCccceeeehhHHHHHHHHH
Confidence 33467778888887766541 1233556788887777765 355 99999999999987
No 8
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=24.70 E-value=56 Score=32.37 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCccccChhhHh----hcc-----cCCcchhhHHHHHhh
Q psy1968 180 NLPVRLRSPSTVF----NGQ-----SGHCFELSTLLVSLL 210 (215)
Q Consensus 180 ~~P~~l~SPtt~L----~~Q-----kGnCFD~S~LLCSLL 210 (215)
..|..|.....+| ..+ .|.|.|||.++|++|
T Consensus 249 ~~p~~~~gs~~il~~~~~~~~~~~k~G~C~dfA~~~~~ll 288 (687)
T 2q3z_A 249 VSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVL 288 (687)
T ss_dssp CCTTTCCBSHHHHHHHHHTTTCCEEEECHHHHHHHHHHHH
T ss_pred CCCccccCchHHHHHHHhcCCCccceeehHHHHHHHHHHH
Confidence 3455665555553 332 699999999999987
No 9
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=17.73 E-value=47 Score=28.57 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=28.9
Q ss_pred ccccccCCCCCCCCccccChhhH-----hhcccCCcchhhHHHHHhhhh
Q psy1968 169 HIVYEPLDHPTNLPVRLRSPSTV-----FNGQSGHCFELSTLLVSLLLV 212 (215)
Q Consensus 169 ~L~YEpLe~P~~~P~~l~SPtt~-----L~~QkGnCFD~S~LLCSLLlG 212 (215)
.+.||=|+.-..-|-. .+|..+ .+++-|-||++..|+..+|..
T Consensus 39 ~IPFENLdv~~g~~i~-ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~ 86 (295)
T 2ija_A 39 AVPFENLNIHCGDAMD-LGLEAIFDQVVRRNRGGWCLQVNHLLYWALTT 86 (295)
T ss_dssp HSCEECTTGGGTCCCC-CSHHHHHHHHHTTCCCBCHHHHHHHHHHHHHH
T ss_pred CCCCcChhhhcCCCCC-CCHHHHHHHHhcCCCcEEhHHHHHHHHHHHHH
Confidence 6777777554333322 345443 367889999999999999853
No 10
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=17.53 E-value=45 Score=28.60 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=27.7
Q ss_pred ccccccCCCCCCCCccccChhhH-----hhcccCCcchhhHHHHHhhhh
Q psy1968 169 HIVYEPLDHPTNLPVRLRSPSTV-----FNGQSGHCFELSTLLVSLLLV 212 (215)
Q Consensus 169 ~L~YEpLe~P~~~P~~l~SPtt~-----L~~QkGnCFD~S~LLCSLLlG 212 (215)
.+.||=|+.-..-|-.-.+|..+ .+++-|-||++..|+..+|-.
T Consensus 38 ~IPFENLdv~~g~~i~~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~ 86 (278)
T 1w5r_A 38 SIPFENLDPLLGIPVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVLEE 86 (278)
T ss_dssp HSCEECHHHHTTCCCCCCSHHHHHHHHTTTCCCBCHHHHHHHHHHHHHH
T ss_pred CCCccChhhhcCCCCCCCCHHHHHHHHhcCCCceehHHHHHHHHHHHHH
Confidence 66777664332222202244443 367889999999999999853
Done!