RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1968
         (215 letters)



>gnl|CDD|216735 pfam01841, Transglut_core, Transglutaminase-like superfamily.  This
           family includes animal transglutaminases and other
           bacterial proteins of unknown function. Sequence
           conservation in this superfamily primarily involves
           three motifs that centre around conserved cysteine,
           histidine, and aspartate residues that form the
           catalytic triad in the structurally characterized
           transglutaminase, the human blood clotting factor
           XIIIa'. On the basis of the experimentally demonstrated
           activity of the Methanobacterium phage pseudomurein
           endoisopeptidase, it is proposed that many, if not all,
           microbial homologues of the transglutaminases are
           proteases and that the eukaryotic transglutaminases have
           evolved from an ancestral protease.
          Length = 108

 Score = 32.0 bits (73), Expect = 0.073
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 163 ASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
             +V  +I Y   D P   P        V     G C + ++L V+LL
Sbjct: 22  YDYVRKNITY---DAPGRSPGD-DDAEEVLFTGKGVCGDFASLFVALL 65


>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated.
          Length = 341

 Score = 27.3 bits (61), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 9/34 (26%)

Query: 46  VPIKYETLDRDKV---------LNAYRTTLGRLG 70
           V I YE L+R +V         LN +R TLGR G
Sbjct: 157 VKILYELLERGRVPVVPGFIGNLNGFRATLGRGG 190


>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
           protein p101 subunit.  Class I PI3Ks are dual-specific
           lipid and protein kinases involved in numerous
           intracellular signaling pathways. Class IB PI3K,
           p110gamma, is mainly activated by seven-transmembrane
           G-protein-coupled receptors (GPCRs), through its
           regulatory subunit p101 and G-protein beta-gamma
           subunits.
          Length = 856

 Score = 26.9 bits (59), Expect = 9.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 1   MDKLASHLLGKVPSSGNLMDSFHLDDSDLDSDDENDRRPP 40
           M  LA H L  V S  + MDS +++DSD  SD+   R  P
Sbjct: 360 MSNLARHSLTFVSSLSDCMDSGYVEDSDEGSDELPARGEP 399


>gnl|CDD|177589 PHA03348, PHA03348, tegument protein UL21; Provisional.
          Length = 526

 Score = 26.9 bits (60), Expect = 9.9
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 12/43 (27%)

Query: 56  DKVLNAY-RTTLGRLGLVWTPPGG-----------LSPKSVCA 86
           D+V+  Y R+ L R GL W  P G           LSP  V +
Sbjct: 61  DRVVANYVRSELNRRGLKWAAPSGEDEVFVDSLALLSPGGVSS 103


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,973,076
Number of extensions: 1003884
Number of successful extensions: 724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 10
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)