RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1968
(215 letters)
>d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase
(GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]}
Length = 86
Score = 26.8 bits (59), Expect = 0.79
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 83 SVCAVPAASDYPETYLRNTDKEKLLIWYC 111
+V V AA YP+ + +
Sbjct: 3 AVDVVLAARGYPDAPEKGKEITLPEEGLI 31
>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase
(GAR-syn), C-domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 26.1 bits (57), Expect = 1.4
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 82 KSVCAVPAASDYPETYLRNT 101
S+ V AA YP Y
Sbjct: 3 ASLGVVMAAGGYPGDYRTGD 22
>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
{Mycobacterium smegmatis [TaxId: 1772]}
Length = 273
Score = 26.1 bits (57), Expect = 3.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 169 HIVYEPLDHPTNLPVRLRSPSTVF-----NGQSGHCFELSTLLVSLL 210
I +E LD +PV S +F + G+ +E + LL +L
Sbjct: 33 SIPFENLDPLLGIPVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVL 79
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 24.4 bits (53), Expect = 3.5
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 14 SSGNLMDSFHLDDSDLDSDDENDRRPPIVQPIVPIKYETLDRDKVLNAYRTT 65
S L+ H+DD D+D+ + + + D A + +
Sbjct: 4 GSSGLLS--HMDDPDIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKAS 53
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.1 bits (56), Expect = 3.7
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 118 YSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLV-----EFKSWSGCASFVSDHIVY 172
SS++ R V+A + GV ++ T N+ ++ S A
Sbjct: 9 TSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQ 68
Query: 173 EPLDHPTNLPVRLRSPSTVFNGQSGHCF 200
+ P V G+ G F
Sbjct: 69 WQAATEEAIIELAAQPEVVAIGECGLDF 96
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 25.8 bits (55), Expect = 3.7
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 118 YSSRYPLRRPLVMALENECGVQKMVCTSINVTRFP----LVEFKSWSGCASFVSDHIVYE 173
+ + + GV K++ + F L E A + ++ +
Sbjct: 13 DFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEK 72
Query: 174 PLDHP 178
D
Sbjct: 73 HSDVS 77
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 25.5 bits (56), Expect = 4.7
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 87 VPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRY 122
V A + +P T+ + K + Y + RR RY
Sbjct: 29 VGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRY 64
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr
{Deinococcus radiodurans [TaxId: 1299]}
Length = 137
Score = 25.1 bits (54), Expect = 4.8
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 87 VPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSI 146
VPA S + SR L+ A C ++
Sbjct: 71 VPADSTITARVGLQKAGLAFALDVELEGHFPGLSREQAEG-LMHAAHEVCPYSAATRNNV 129
Query: 147 NVT 149
+V
Sbjct: 130 DVR 132
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 25.2 bits (55), Expect = 5.5
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 12 VPSSGNLMDSFHLDDSDLDSDDENDRRPPIVQPIVPIKYETLDRDKVLNAYRTTLG-RLG 70
S +DSF + E P+ + P Y + DR + N G
Sbjct: 193 FLPSALGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHG 252
Query: 71 LVWTP 75
+W P
Sbjct: 253 NMWVP 257
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 277
Score = 25.4 bits (55), Expect = 5.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 169 HIVYEPLDHPTNLPVRLRSPST----VFNGQSGHCFELSTLLVSLL 210
+ +E LD + P+ + + V + G+CFEL++L LL
Sbjct: 39 RVAFENLDVLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLL 84
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 25.3 bits (54), Expect = 6.3
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 118 YSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLV-----EFKSWSGCASFVSDHIVY 172
+ ++ R V++ E ++ +V +N+
Sbjct: 13 HFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKE 72
Query: 173 EPLDHPTNLPVRLRSPSTVFNGQSGHCF 200
P D +L + V G++G F
Sbjct: 73 VPEDFIEHLEKFAKDEKVVAIGETGLDF 100
>d2aj7a1 b.158.1.1 (A:1-148) Hypothetical protein BH3618 {Bacillus
halodurans [TaxId: 86665]}
Length = 148
Score = 24.3 bits (53), Expect = 8.8
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 124 LRRPLVMALENECGVQKMVCTSINVTRFPLVE 155
L+ P+V+ + G Q ++ + + PL +
Sbjct: 110 LQAPIVINANKQMGKQLVLGDTAYNRKQPLFQ 141
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium
loti [TaxId: 381]}
Length = 270
Score = 24.9 bits (54), Expect = 8.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 169 HIVYEPLDHPTNLPVRLRSPST----VFNGQSGHCFELSTLLVSLL 210
I +E +D PVRL + V G+ G+CFE + L + L
Sbjct: 34 AIPFENIDPFLGRPVRLDLAALQDKIVLGGRGGYCFEHNLLFMHAL 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,605
Number of extensions: 36488
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 20
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)