BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1969
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 80 EILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAML-----ANVIGFPSTNVPLGLGSNG 134
E+L ++ PT P A + GEI YY M AN+ G P+ +VP G SN
Sbjct: 376 EVLSQYDAILTPTSPVTAFKIGEI--KDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNN 432
Query: 135 LPVGLQV 141
LPVG+QV
Sbjct: 433 LPVGVQV 439
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 6 EILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAML-----SNVIGFPSTNVPLGLGSNG 60
E+L ++ PT P A + GEI YY M +N+ G P+ +VP G SN
Sbjct: 376 EVLSQYDAILTPTSPVTAFKIGEI--KDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNN 432
Query: 61 LPVGLQA-GQQLA 72
LPVG+Q G++ A
Sbjct: 433 LPVGVQVIGRRFA 445
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 80 EILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLP 136
E+L ++ PT P A + GEI L + + AN+ G P+ +VP G SN LP
Sbjct: 377 EVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIPANLAGLPAISVPFGF-SNNLP 435
Query: 137 VGLQV 141
VG+QV
Sbjct: 436 VGVQV 440
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 6 EILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLP 62
E+L ++ PT P A + GEI L + + +N+ G P+ +VP G SN LP
Sbjct: 377 EVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIPANLAGLPAISVPFGF-SNNLP 435
Query: 63 VGLQA-GQQLA 72
VG+Q G++ A
Sbjct: 436 VGVQVIGRRFA 446
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 13 VLIYPTFPAQAQRHGEILLTT----SGVYYAMLS------------NVIGFPSTNVPLGL 56
+LI PT Q GE++L G A +S NV G P+ ++P+G+
Sbjct: 383 LLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM 442
Query: 57 GSNGLPVGLQ 66
S+G+P+G+Q
Sbjct: 443 SSDGMPIGVQ 452
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 16/71 (22%)
Query: 87 VLIYPTFPAQAQRHGEILLTT----SGVYYA-------MLA-----NVIGFPSTNVPLGL 130
+LI PT Q GE++L G A MLA NV G P+ ++P+G+
Sbjct: 383 LLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM 442
Query: 131 GSNGLPVGLQV 141
S+G+P+G+Q+
Sbjct: 443 SSDGMPIGVQI 453
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 13 VLIYPTFPAQAQRHGEILLTT----SGVYYAMLS------------NVIGFPSTNVPLGL 56
+LI PT Q GE++L G A +S NV G P+ ++P+G+
Sbjct: 383 LLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM 442
Query: 57 GSNGLPVGLQ 66
S+G+P+G+Q
Sbjct: 443 SSDGMPIGVQ 452
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 16/71 (22%)
Query: 87 VLIYPTFPAQAQRHGEILLTT----SGVYYA-------MLA-----NVIGFPSTNVPLGL 130
+LI PT Q GE++L G A MLA NV G P+ ++P+G+
Sbjct: 383 LLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM 442
Query: 131 GSNGLPVGLQV 141
S+G+P+G+Q+
Sbjct: 443 SSDGMPIGVQI 453
>pdb|3UMB|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Rsc1362
Length = 233
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 52 VPLGLGSNGLPVGLQAGQQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILLTTSGVY 111
+PLG+ SNG P L+ + A + +L D V +Y T PA
Sbjct: 116 LPLGILSNGNPQXLEIAVKSAGXSGLFDHVLSVDAVRLYKTAPAA--------------- 160
Query: 112 YAMLANVIGFPSTNVPLGLGSNG 134
YA+ G P+ + L + SNG
Sbjct: 161 YALAPRAFGVPAAQI-LFVSSNG 182
>pdb|3E7D|A Chain A, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|B Chain B, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|C Chain C, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|D Chain D, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
Length = 212
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 131 GSNGLPVGLQV-CETASVAQSVTSFGVSTHSRLI-----PSTPQYLDNIDSPRRSTAVDY 184
G N L G + C+ VA+ +T + +R+I PS P+ I + R + A+D
Sbjct: 66 GRNALLAGAPILCDARMVAEGITRSRLPADNRVIYTLSDPSVPELAKKIGNTRSAAALDL 125
Query: 185 VWTQVKGFI 193
++G I
Sbjct: 126 WLPHIEGSI 134
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 116 ANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLD 171
A V G+PS VP+G +GLPVGL TA + + R P + D
Sbjct: 439 AAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTRARRPPHFD 493
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 87 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCE-TA 145
V Y RH LLT G Y +A+ + PS+ + L + +V T
Sbjct: 158 VATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAI--------LDIERKVTTLTR 209
Query: 146 SVAQSVTSFGVSTHSRLIPSTPQYLDN 172
S V +FGV LIP + LDN
Sbjct: 210 SGELPVDNFGVPLAGSLIPWIDKQLDN 236
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 87 VLIYPTFPA----QAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVC 142
+L+ PT P +A + L + +Y N++ + VP G GLP G+ +
Sbjct: 393 ILLLPTAPTIHKVEAVMADPVRLNSQLGHYTNFVNLLDCAAIAVPAGFIETGLPFGVTLV 452
Query: 143 ETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSP 176
A S+ H RL P Q ++ P
Sbjct: 453 GPAFSDDSMALIADRLHRRLEPGYGQDRASLPDP 486
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 87 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCE-TA 145
V Y RH LLT G Y +A+ + PS+ + L + +V T
Sbjct: 158 VATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAI--------LDIERKVTTLTR 209
Query: 146 SVAQSVTSFGVSTHSRLIPSTPQYLDN 172
S V +FGV LIP + LDN
Sbjct: 210 SGELPVDNFGVPLAGSLIPWIDKQLDN 236
>pdb|1PK0|A Chain A, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|B Chain B, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|C Chain C, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
Length = 507
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 163 IPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALH 216
IP++ +++ N+ S RRS+ V K V KI +L DY++ A H
Sbjct: 366 IPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANH 419
>pdb|1K8T|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef)
pdb|1K90|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K93|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1LVC|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1S26|A Chain A, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|B Chain B, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|C Chain C, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
Length = 510
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 163 IPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALH 216
IP++ +++ N+ S RRS+ V K V KI +L DY++ A H
Sbjct: 367 IPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANH 420
>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
Length = 747
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 163 IPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALH 216
IP++ +++ N+ S RRS+ V K V KI +L DY++ A H
Sbjct: 604 IPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANH 657
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 5 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 63
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 163 IPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALH 216
IP++ +++ N+ S RRS+ V K V KI +L DY++ A H
Sbjct: 634 IPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANH 687
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 5 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 63
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 VPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTP------QYLDNIDSPRR 178
V LG G+ G+P ++ E VT + + + +PS P + D+I P R
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,924,874
Number of Sequences: 62578
Number of extensions: 326452
Number of successful extensions: 777
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 35
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)