Query psy1969
Match_columns 256
No_of_seqs 299 out of 2563
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:51:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1212|consensus 99.7 3.3E-18 7.2E-23 165.9 9.9 126 70-247 431-559 (560)
2 PRK06170 amidase; Provisional 99.7 5.6E-18 1.2E-22 164.3 9.2 106 64-246 369-489 (490)
3 COG0154 GatA Asp-tRNAAsn/Glu-t 99.7 4.7E-17 1E-21 157.4 9.1 121 46-243 340-471 (475)
4 PRK06169 putative amidase; Pro 99.7 8.6E-17 1.9E-21 155.2 8.9 92 50-141 336-435 (466)
5 PRK06102 hypothetical protein; 99.7 8.6E-17 1.9E-21 154.7 8.7 115 49-241 328-451 (452)
6 PRK07042 amidase; Provisional 99.7 1.1E-16 2.4E-21 154.3 9.3 79 63-141 346-431 (464)
7 PRK06061 amidase; Provisional 99.7 1.6E-16 3.4E-21 154.1 9.3 89 53-141 349-447 (483)
8 PRK12470 amidase; Provisional 99.7 2.4E-16 5.2E-21 152.1 9.3 90 52-141 332-431 (462)
9 PRK06529 amidase; Provisional 99.6 2.2E-16 4.8E-21 152.9 8.1 80 62-141 348-457 (482)
10 PRK07486 amidase; Provisional 99.6 3.9E-16 8.5E-21 151.3 8.4 88 54-141 352-450 (484)
11 PRK07056 amidase; Provisional 99.6 4.2E-16 9.2E-21 150.0 8.5 116 48-241 329-453 (454)
12 PRK09201 amidase; Provisional 99.6 3.1E-16 6.7E-21 151.3 7.5 92 49-141 333-434 (465)
13 TIGR02715 amido_AtzE amidohydr 99.6 5.4E-16 1.2E-20 149.1 9.0 88 53-141 330-427 (452)
14 PRK07488 indole acetimide hydr 99.6 9.3E-16 2E-20 148.3 10.6 106 63-245 352-471 (472)
15 PRK07235 amidase; Provisional 99.6 4.6E-16 1E-20 151.5 8.1 76 65-141 396-480 (502)
16 TIGR00132 gatA glutamyl-tRNA(G 99.6 6.1E-16 1.3E-20 149.0 7.5 73 69-141 364-440 (460)
17 PRK08310 amidase; Provisional 99.6 7.8E-16 1.7E-20 145.7 7.7 87 54-141 281-373 (395)
18 PRK05962 amidase; Validated 99.6 1.1E-15 2.4E-20 146.0 8.1 91 49-141 301-400 (424)
19 PRK07869 amidase; Provisional 99.6 1.8E-15 3.9E-20 146.1 9.4 73 69-141 359-441 (468)
20 PRK07487 amidase; Provisional 99.6 4.6E-15 9.9E-20 143.4 10.6 101 65-243 353-461 (469)
21 PLN02722 indole-3-acetamide am 99.6 1.8E-15 4E-20 144.5 6.9 93 48-141 303-401 (422)
22 PRK00012 gatA aspartyl/glutamy 99.6 3.2E-15 6.9E-20 144.0 8.5 73 69-141 365-441 (459)
23 PRK07139 amidase; Provisional 99.6 3E-15 6.4E-20 143.6 8.1 72 69-141 339-412 (439)
24 PRK08137 amidase; Provisional 99.6 8E-15 1.7E-19 142.6 9.9 92 75-246 396-489 (497)
25 TIGR02713 allophanate_hyd allo 99.6 5.9E-15 1.3E-19 145.4 8.1 88 54-141 298-390 (561)
26 PRK08186 allophanate hydrolase 99.6 6.1E-15 1.3E-19 146.4 8.1 79 62-141 343-427 (600)
27 PF01425 Amidase: Amidase; In 99.4 2.4E-13 5.2E-18 127.3 5.5 77 65-141 343-430 (441)
28 PRK06828 amidase; Provisional 99.3 8.7E-12 1.9E-16 121.4 10.1 77 75-245 410-488 (491)
29 PRK06707 amidase; Provisional 99.3 1.9E-11 4.2E-16 120.1 9.6 82 71-246 452-535 (536)
30 PRK11910 amidase; Provisional 99.1 2.3E-10 4.9E-15 113.6 10.1 85 71-247 527-614 (615)
31 PRK06565 amidase; Validated 99.0 1.6E-09 3.4E-14 106.8 10.9 96 77-249 457-564 (566)
32 KOG1211|consensus 98.6 3.9E-08 8.5E-13 95.3 6.3 62 80-141 409-474 (506)
33 PRK06529 amidase; Provisional 98.1 3E-06 6.6E-11 82.4 5.2 81 5-85 366-477 (482)
34 PRK12470 amidase; Provisional 98.1 3.6E-06 7.9E-11 81.5 5.1 80 5-84 360-450 (462)
35 COG0154 GatA Asp-tRNAAsn/Glu-t 98.1 3.7E-06 8E-11 81.9 4.8 79 5-84 377-465 (475)
36 PRK07042 amidase; Provisional 98.1 3.7E-06 7.9E-11 81.5 4.7 80 5-84 363-450 (464)
37 PRK06061 amidase; Provisional 98.0 5.1E-06 1.1E-10 80.9 4.8 80 5-84 376-466 (483)
38 PRK07235 amidase; Provisional 98.0 4.1E-06 9E-11 82.0 4.2 79 5-84 411-499 (502)
39 PRK06170 amidase; Provisional 98.0 4.6E-06 1E-10 81.3 4.5 80 5-84 385-480 (490)
40 PRK07869 amidase; Provisional 98.0 5.2E-06 1.1E-10 80.5 4.6 80 5-84 369-460 (468)
41 PRK06169 putative amidase; Pro 98.0 8.7E-06 1.9E-10 78.9 6.0 80 5-84 366-454 (466)
42 PRK00012 gatA aspartyl/glutamy 98.0 6.2E-06 1.4E-10 79.7 4.8 78 5-82 375-458 (459)
43 PRK09201 amidase; Provisional 98.0 8.5E-06 1.8E-10 79.0 5.3 80 5-85 364-454 (465)
44 TIGR02715 amido_AtzE amidohydr 98.0 7.4E-06 1.6E-10 79.1 4.7 79 5-84 357-446 (452)
45 TIGR00132 gatA glutamyl-tRNA(G 98.0 8.8E-06 1.9E-10 78.7 5.0 79 5-83 374-458 (460)
46 PRK07139 amidase; Provisional 97.9 9.7E-06 2.1E-10 78.1 4.3 77 5-83 349-430 (439)
47 PRK07488 indole acetimide hydr 97.9 1E-05 2.2E-10 78.5 4.5 80 5-84 370-463 (472)
48 PLN02722 indole-3-acetamide am 97.9 9.5E-06 2.1E-10 77.9 4.1 63 5-68 335-402 (422)
49 PRK07487 amidase; Provisional 97.9 1.5E-05 3.1E-10 77.5 5.2 79 5-84 368-455 (469)
50 PRK07486 amidase; Provisional 97.9 1.2E-05 2.6E-10 78.4 4.3 81 5-85 378-470 (484)
51 PRK06102 hypothetical protein; 97.9 1.2E-05 2.6E-10 77.7 4.3 78 5-83 359-446 (452)
52 PRK08310 amidase; Provisional 97.8 1.7E-05 3.7E-10 75.3 3.8 78 5-83 307-391 (395)
53 PRK07056 amidase; Provisional 97.7 2.8E-05 6E-10 75.2 4.0 63 5-68 361-431 (454)
54 PRK05962 amidase; Validated 97.7 4E-05 8.7E-10 73.5 4.1 77 5-83 332-418 (424)
55 PRK08137 amidase; Provisional 97.6 5.4E-05 1.2E-09 74.0 4.7 77 5-84 400-481 (497)
56 TIGR02713 allophanate_hyd allo 97.6 7.2E-05 1.6E-09 74.3 4.5 80 5-84 324-409 (561)
57 PRK08186 allophanate hydrolase 97.5 0.00011 2.3E-09 73.7 4.5 80 5-84 361-446 (600)
58 KOG1212|consensus 97.5 8.2E-05 1.8E-09 73.3 3.4 76 7-82 444-547 (560)
59 PF01425 Amidase: Amidase; In 97.3 7.8E-05 1.7E-09 69.8 1.1 64 5-68 358-431 (441)
60 PRK06828 amidase; Provisional 95.9 0.0073 1.6E-07 59.2 4.0 63 5-84 414-480 (491)
61 PRK06707 amidase; Provisional 92.3 0.14 3E-06 50.9 3.8 63 5-84 460-526 (536)
62 KOG1211|consensus 91.8 0.11 2.3E-06 51.1 2.3 64 5-68 408-475 (506)
63 PRK11910 amidase; Provisional 86.1 0.76 1.7E-05 46.5 3.7 64 6-84 536-604 (615)
64 PRK06565 amidase; Validated 76.1 4.7 0.0001 40.5 5.2 75 10-84 466-552 (566)
No 1
>KOG1212|consensus
Probab=99.75 E-value=3.3e-18 Score=165.85 Aligned_cols=126 Identities=36% Similarity=0.516 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHh--ccCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCCCCCceEEEEeecccc
Q psy1969 70 QLASYITDGEEIL--GTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASV 147 (256)
Q Consensus 70 ~r~~l~~~~~~~~--~~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi~~~~~~ 147 (256)
+++.++.++...| .+.||||||+.+.+|++|+.+.....++.||.+||++|+||++||++.+...... +
T Consensus 431 ~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~---~------ 501 (560)
T KOG1212|consen 431 DIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEK---E------ 501 (560)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhc---c------
Confidence 3444555554444 5799999999999999999876666778999999999999999999976432211 1
Q ss_pred ccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccC-CcccCCCeeeEeecCCCchH
Q psy1969 148 AQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSH-LVDYWSPALHKVMAGPNQDR 226 (256)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Pv~~Qvvg~~~~de 226 (256)
..| + .+ |.+.+. ...+ .+..|+|+||||||.+|+||
T Consensus 502 -------------------~~~------~-~~--D~~~~~---------------~~~g~~~s~GlPigVQVVa~p~~de 538 (560)
T KOG1212|consen 502 -------------------EEY------P-MN--DKWATK---------------VPKGSLDSRGLPIGVQVVANPNQDE 538 (560)
T ss_pred -------------------ccc------c-cc--cHHHHh---------------CcccccCCCCCceeEEEecCCCchH
Confidence 001 0 11 112111 1123 34458999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q psy1969 227 LCLAVAKKLEDIFYGWTMPNS 247 (256)
Q Consensus 227 ~~L~~a~~ie~~~~~~~~~~~ 247 (256)
.||++|++||+.++||..|..
T Consensus 539 lcL~va~~lE~~~gg~~~p~~ 559 (560)
T KOG1212|consen 539 LCLAVARELERKFGGWVRPGP 559 (560)
T ss_pred HHHHHHHHHHHHhCCccCCCC
Confidence 999999999999999998864
No 2
>PRK06170 amidase; Provisional
Probab=99.73 E-value=5.6e-18 Score=164.30 Aligned_cols=106 Identities=27% Similarity=0.403 Sum_probs=88.3
Q ss_pred hhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc--------------cccccccchhhhhhCCceEEecC
Q psy1969 64 GLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL--------------TTSGVYYAMLANVIGFPSTNVPL 128 (256)
Q Consensus 64 gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~--------------~~~~~~yT~~~NllG~PAisVP~ 128 (256)
.|..+ ..|..+++++.++|+++|+||+|+++.+|++++.... ....+.||.+||++|+|+++||+
T Consensus 369 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~ 448 (490)
T PRK06170 369 DWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPI 448 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCCeEEEEC
Confidence 34444 4567789999999999999999999999999864210 00113578999999999999999
Q ss_pred CCCCCCCceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCc
Q psy1969 129 GLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLV 208 (256)
Q Consensus 129 G~~~~glPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (256)
|+..+|||+|+||
T Consensus 449 g~~~~GlPvGlQl------------------------------------------------------------------- 461 (490)
T PRK06170 449 GLSATGLPVGVQI------------------------------------------------------------------- 461 (490)
T ss_pred CcCCCCCceeEEE-------------------------------------------------------------------
Confidence 9987888888887
Q ss_pred ccCCCeeeEeecCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy1969 209 DYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 246 (256)
Q Consensus 209 ~~~~Pv~~Qvvg~~~~de~~L~~a~~ie~~~~~~~~~~ 246 (256)
||++++|++||++|+.||+++.+|.+|.
T Consensus 462 ----------ig~~~~D~~LL~~a~~lE~~~~~~~~~~ 489 (490)
T PRK06170 462 ----------VGPALEDRTPLRLAELLEEEFGGFRPPP 489 (490)
T ss_pred ----------ecCCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999998875
No 3
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.7e-17 Score=157.43 Aligned_cols=121 Identities=26% Similarity=0.312 Sum_probs=99.1
Q ss_pred CCCeeeeeccccCCCCchhhhhhh-hH---HHHHHHHHHHhccCCceeccCCCCCCccccc-c---c---ccccccccch
Q psy1969 46 GFPSTNVPLGLGSNGLPVGLQAGQ-QL---ASYITDGEEILGTDGVLIYPTFPAQAQRHGE-I---L---LTTSGVYYAM 114 (256)
Q Consensus 46 GePaV~~pl~~g~~~lp~gyQla~-~r---~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~-~---~---~~~~~~~yT~ 114 (256)
-.|.+.+++..|...+..+|..+. .+ ..+++++.++|+++|+||+||+|.++|++++ . . .......||.
T Consensus 340 ~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~ 419 (475)
T COG0154 340 FGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTV 419 (475)
T ss_pred ccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccc
Confidence 346677778788777777777763 34 2348999999999999999999999999986 1 1 1122347899
Q ss_pred hhhhhCCceEEecCCCCCCCCceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhh
Q psy1969 115 LANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFIN 194 (256)
Q Consensus 115 ~~NllG~PAisVP~G~~~~glPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (256)
++|++|+|++|||+|++++|||+|+||
T Consensus 420 ~~Nl~G~PaisvP~g~~~~GlPvGlql----------------------------------------------------- 446 (475)
T COG0154 420 PANLAGLPAISVPAGFTADGLPVGLQL----------------------------------------------------- 446 (475)
T ss_pred cccccCCCeEEeccCCCCCCCCeeEEE-----------------------------------------------------
Confidence 999999999999999987888888888
Q ss_pred hhhhhhhhhccCCcccCCCeeeEeecCCCchHHHHHHHHHHHHHhcCCC
Q psy1969 195 IKLMFVVKITSHLVDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWT 243 (256)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~de~~L~~a~~ie~~~~~~~ 243 (256)
||++|+|++||++|+.+|++.+...
T Consensus 447 ------------------------ig~~~~d~~LL~~a~~~E~~~~~~~ 471 (475)
T COG0154 447 ------------------------IGPAFDDATLLRLAAALEQALGWHR 471 (475)
T ss_pred ------------------------ecCCCCHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999986433
No 4
>PRK06169 putative amidase; Provisional
Probab=99.68 E-value=8.6e-17 Score=155.18 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=67.2
Q ss_pred eeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccc--c----c-ccccccchhhhhhCC
Q psy1969 50 TNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEIL--L----T-TSGVYYAMLANVIGF 121 (256)
Q Consensus 50 V~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~--~----~-~~~~~yT~~~NllG~ 121 (256)
+..++..|.......|..+ ..|+.+++++.++|+++|+||+|++|.+||+++... . . .....||.+||++|+
T Consensus 336 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~ 415 (466)
T PRK06169 336 LRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQ 415 (466)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCC
Confidence 3333444443333444444 456778899999999999999999999999986421 0 0 112358999999999
Q ss_pred ceEEecCCCCCCCCceEEEE
Q psy1969 122 PSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 122 PAisVP~G~~~~glPvGlQi 141 (256)
|+++||+|+..+|+|+|+||
T Consensus 416 PaisvP~g~~~~GlPvGlQl 435 (466)
T PRK06169 416 PAASVPCGFTAAGLPVGLQI 435 (466)
T ss_pred CeEEEecCcCCCCCceEEEE
Confidence 99999999887788888877
No 5
>PRK06102 hypothetical protein; Provisional
Probab=99.68 E-value=8.6e-17 Score=154.69 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=88.9
Q ss_pred eeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccc--c------cccccccchhhhhh
Q psy1969 49 STNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEIL--L------TTSGVYYAMLANVI 119 (256)
Q Consensus 49 aV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~--~------~~~~~~yT~~~Nll 119 (256)
.+..++..+.......|..+ ..|+++++++.++|+ +|+||+||++.+||+++... . ......||.+||++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~ 406 (452)
T PRK06102 328 RVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFL 406 (452)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCcccccc
Confidence 33334444443334445554 457778999999998 89999999999999986421 0 11123589999999
Q ss_pred CCceEEecCCCCCCCCceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhh
Q psy1969 120 GFPSTNVPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMF 199 (256)
Q Consensus 120 G~PAisVP~G~~~~glPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (256)
|+|+++||+|+..+|+|+|+||
T Consensus 407 g~PaisvP~g~~~~glPvGlQi---------------------------------------------------------- 428 (452)
T PRK06102 407 DMCGVSLPCGTGAAGMPVGLLL---------------------------------------------------------- 428 (452)
T ss_pred CCCeEEEecCCCCCCCCEEEEE----------------------------------------------------------
Confidence 9999999999887788888777
Q ss_pred hhhhccCCcccCCCeeeEeecCCCchHHHHHHHHHHHHHhcC
Q psy1969 200 VVKITSHLVDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYG 241 (256)
Q Consensus 200 ~~~~~~~~~~~~~Pv~~Qvvg~~~~de~~L~~a~~ie~~~~~ 241 (256)
||++++|++||++|+.||+++++
T Consensus 429 -------------------vg~~~~D~~lL~~a~~le~~l~~ 451 (452)
T PRK06102 429 -------------------SAPAGRDERLLRAALAVEAVIRG 451 (452)
T ss_pred -------------------ECCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 6
>PRK07042 amidase; Provisional
Probab=99.68 E-value=1.1e-16 Score=154.34 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=61.8
Q ss_pred hhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccc------ccccccccchhhhhhCCceEEecCCCCCCCC
Q psy1969 63 VGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEIL------LTTSGVYYAMLANVIGFPSTNVPLGLGSNGL 135 (256)
Q Consensus 63 ~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~------~~~~~~~yT~~~NllG~PAisVP~G~~~~gl 135 (256)
..|..+ ..+..+++++.++|+++|+||+||+|.+||+++... .....+.||.+||++|+|+++||+|+..+|+
T Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~Gl 425 (464)
T PRK07042 346 VEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGL 425 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCC
Confidence 344443 446677889999999999999999999999886311 1112345899999999999999999877788
Q ss_pred ceEEEE
Q psy1969 136 PVGLQV 141 (256)
Q Consensus 136 PvGlQi 141 (256)
|+|+|+
T Consensus 426 PvGlQl 431 (464)
T PRK07042 426 PIGLQI 431 (464)
T ss_pred CeEEEE
Confidence 888777
No 7
>PRK06061 amidase; Provisional
Probab=99.67 E-value=1.6e-16 Score=154.11 Aligned_cols=89 Identities=28% Similarity=0.353 Sum_probs=66.4
Q ss_pred eccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc---------cccccccchhhhhhCCc
Q psy1969 53 PLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANVIGFP 122 (256)
Q Consensus 53 pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---------~~~~~~yT~~~NllG~P 122 (256)
++..+.......|..+ ..|..+++++.++|+++|+||+|++|.+||+++.... ......||.+||++|+|
T Consensus 349 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~P 428 (483)
T PRK06061 349 NARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWP 428 (483)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCC
Confidence 3334443333445444 4467789999999999999999999999999975210 01123489999999999
Q ss_pred eEEecCCCCCCCCceEEEE
Q psy1969 123 STNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 123 AisVP~G~~~~glPvGlQi 141 (256)
+++||+|+..+|+|+|+||
T Consensus 429 aisvP~g~~~~GlPvGlQi 447 (483)
T PRK06061 429 SINVPAGFTSDGLPIGAQL 447 (483)
T ss_pred eEEEecCcCCCCCCeeeEE
Confidence 9999999887888888877
No 8
>PRK12470 amidase; Provisional
Probab=99.66 E-value=2.4e-16 Score=152.06 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=66.2
Q ss_pred eeccccCCCCchhhhhhhhHH-HHHHHHHHHhccCCceeccCCCCCCcccccccc---------cccccccchhhhhhCC
Q psy1969 52 VPLGLGSNGLPVGLQAGQQLA-SYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANVIGF 121 (256)
Q Consensus 52 ~pl~~g~~~lp~gyQla~~r~-~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---------~~~~~~yT~~~NllG~ 121 (256)
.++..|.......|.....++ .++.++.++|+++|+||+|++|.++|+++.... ......||.+||++|+
T Consensus 332 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~ 411 (462)
T PRK12470 332 AIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQ 411 (462)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCC
Confidence 334444433444454333434 778999999999999999999999999864210 0112358999999999
Q ss_pred ceEEecCCCCCCCCceEEEE
Q psy1969 122 PSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 122 PAisVP~G~~~~glPvGlQi 141 (256)
|+++||+|++.+|||+|+||
T Consensus 412 PaisvP~g~~~~GlPvGlql 431 (462)
T PRK12470 412 PAAVVPWDFDGDGLPMSVQL 431 (462)
T ss_pred CeEEEecCcCCCCCceEEEE
Confidence 99999999988888888888
No 9
>PRK06529 amidase; Provisional
Probab=99.65 E-value=2.2e-16 Score=152.92 Aligned_cols=80 Identities=25% Similarity=0.320 Sum_probs=62.3
Q ss_pred chhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc-------------------------c----ccccc
Q psy1969 62 PVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL-------------------------T----TSGVY 111 (256)
Q Consensus 62 p~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~-------------------------~----~~~~~ 111 (256)
...|..+ ..|+.+++++.++|+++|+||+|+++.+||+++.... . ..+..
T Consensus 348 ~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (482)
T PRK06529 348 AKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITP 427 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhccc
Confidence 3445444 4567788899999999999999999999999864110 0 11234
Q ss_pred cchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 112 YAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 112 yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
||.+||++|+|+++||+|+..+|||+|+|+
T Consensus 428 ~t~~~Nl~G~PaisvP~g~~~~GlPvGlQl 457 (482)
T PRK06529 428 YTALANLTGQPAISLPTYETKEGLPMGVQL 457 (482)
T ss_pred ccccccccCCCeEEeecCcCCCCCceeEEE
Confidence 899999999999999999877788888877
No 10
>PRK07486 amidase; Provisional
Probab=99.64 E-value=3.9e-16 Score=151.28 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=64.3
Q ss_pred ccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccc---------cc-ccccccchhhhhhCCc
Q psy1969 54 LGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEIL---------LT-TSGVYYAMLANVIGFP 122 (256)
Q Consensus 54 l~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~---------~~-~~~~~yT~~~NllG~P 122 (256)
+..+.......|..+ ..|+.+++++.++|+++|+||+|+++.++|+++... .. .....+|.+||++|+|
T Consensus 352 ~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~P 431 (484)
T PRK07486 352 IEGGLALTAAQVYEASVIRSAWYQALLRLFERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLP 431 (484)
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCC
Confidence 333333334445544 457778999999999999999999999998875310 00 1112367899999999
Q ss_pred eEEecCCCCCCCCceEEEE
Q psy1969 123 STNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 123 AisVP~G~~~~glPvGlQi 141 (256)
+++||+|+..+|+|+|+||
T Consensus 432 aisvP~g~~~~glPvGlQl 450 (484)
T PRK07486 432 AISVPVGFNAAGLPMGMQI 450 (484)
T ss_pred eEEEECCcCCCCCceEEEE
Confidence 9999999877788888777
No 11
>PRK07056 amidase; Provisional
Probab=99.64 E-value=4.2e-16 Score=149.99 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=87.3
Q ss_pred CeeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccc---ccc-----cccccchhhhh
Q psy1969 48 PSTNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEIL---LTT-----SGVYYAMLANV 118 (256)
Q Consensus 48 PaV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~---~~~-----~~~~yT~~~Nl 118 (256)
|.+..++..+.......|..+ ..|+.+++++.++|+++|+||+|++|.+||+++... ... ....||.+||+
T Consensus 329 ~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl 408 (454)
T PRK07056 329 PRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINF 408 (454)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchh
Confidence 333334444443333344444 457778899999999999999999999999986521 000 12247999999
Q ss_pred hCCceEEecCCCCCCCCceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhh
Q psy1969 119 IGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLM 198 (256)
Q Consensus 119 lG~PAisVP~G~~~~glPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (256)
+|+|+++||+|. .+|+|+|+||
T Consensus 409 ~g~PaisvP~g~-~~glPvGlqi--------------------------------------------------------- 430 (454)
T PRK07056 409 LDGCALSLPCHA-PGEAPVGLML--------------------------------------------------------- 430 (454)
T ss_pred cCCCEEEEeCCC-CCCCCEEEEE---------------------------------------------------------
Confidence 999999999985 4577777777
Q ss_pred hhhhhccCCcccCCCeeeEeecCCCchHHHHHHHHHHHHHhcC
Q psy1969 199 FVVKITSHLVDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYG 241 (256)
Q Consensus 199 ~~~~~~~~~~~~~~Pv~~Qvvg~~~~de~~L~~a~~ie~~~~~ 241 (256)
||++++|++||++|+.||+++.|
T Consensus 431 --------------------vg~~~~D~~lL~~a~~le~~l~~ 453 (454)
T PRK07056 431 --------------------AGAPGRDDRLLAIALAVEAVLRG 453 (454)
T ss_pred --------------------ECCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999864
No 12
>PRK09201 amidase; Provisional
Probab=99.64 E-value=3.1e-16 Score=151.35 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=66.5
Q ss_pred eeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc---------cccccccchhhhh
Q psy1969 49 STNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANV 118 (256)
Q Consensus 49 aV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---------~~~~~~yT~~~Nl 118 (256)
.+..++..|.......|..+ ..|+.+++++.++|+++|+||+|+++.++|+++.... ......||.+||+
T Consensus 333 ~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl 412 (465)
T PRK09201 333 ASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISF 412 (465)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccc
Confidence 33334444444334445544 4577789999999999999999999999999875210 0112358999999
Q ss_pred hCCceEEecCCCCCCCCceEEEE
Q psy1969 119 IGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 119 lG~PAisVP~G~~~~glPvGlQi 141 (256)
+|+|+++||+|+ .+|+|+|+||
T Consensus 413 ~G~PaisvP~g~-~~GlPvGlQi 434 (465)
T PRK09201 413 IGLPVVAVPLRT-PGGLPIGVQL 434 (465)
T ss_pred cCCCeEEEeCCC-CCCcCeEEEE
Confidence 999999999985 4578877777
No 13
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=99.63 E-value=5.4e-16 Score=149.11 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=64.0
Q ss_pred eccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc---------cccccccchhhhhhCCc
Q psy1969 53 PLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANVIGFP 122 (256)
Q Consensus 53 pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---------~~~~~~yT~~~NllG~P 122 (256)
++..+.......|..+ ..|+.+++++.++|+++|+||+|++|.+||+++.... ......||.+||++|+|
T Consensus 330 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~P 409 (452)
T TIGR02715 330 RLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLP 409 (452)
T ss_pred HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCC
Confidence 3334433333344444 4577789999999999999999999999999864210 01123489999999999
Q ss_pred eEEecCCCCCCCCceEEEE
Q psy1969 123 STNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 123 AisVP~G~~~~glPvGlQi 141 (256)
+++||+|. .+|+|+|+|+
T Consensus 410 aisvP~g~-~~glPvGlQi 427 (452)
T TIGR02715 410 VLAAPLPR-PGRLPIGVQL 427 (452)
T ss_pred eEEEeCCC-CCCCCeEEEE
Confidence 99999997 3677777777
No 14
>PRK07488 indole acetimide hydrolase; Validated
Probab=99.63 E-value=9.3e-16 Score=148.25 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=85.7
Q ss_pred hhhhhh-hh-HHHHHHHHHHHhc--cCCceeccCCCCCCccccccc---------cc-ccccccchhhhhhCCceEEecC
Q psy1969 63 VGLQAG-QQ-LASYITDGEEILG--TDGVLIYPTFPAQAQRHGEIL---------LT-TSGVYYAMLANVIGFPSTNVPL 128 (256)
Q Consensus 63 ~gyQla-~~-r~~l~~~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~---------~~-~~~~~yT~~~NllG~PAisVP~ 128 (256)
..|..+ .. |+.+++++.++|+ ++|+||+|+++.++|+++... .. .....||.++|++|+|+++||+
T Consensus 352 ~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~ 431 (472)
T PRK07488 352 DAYRAALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPA 431 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCCeEEEec
Confidence 345554 34 6677889999998 799999999999999987521 00 1123478999999999999999
Q ss_pred CCCCCCCceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCc
Q psy1969 129 GLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLV 208 (256)
Q Consensus 129 G~~~~glPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (256)
|+..+|+|+|+|+
T Consensus 432 g~~~~glPvGlql------------------------------------------------------------------- 444 (472)
T PRK07488 432 GLTPHGLPVGLEL------------------------------------------------------------------- 444 (472)
T ss_pred CCCCCCCCeeEEE-------------------------------------------------------------------
Confidence 9887788888887
Q ss_pred ccCCCeeeEeecCCCchHHHHHHHHHHHHHhcCCCCC
Q psy1969 209 DYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMP 245 (256)
Q Consensus 209 ~~~~Pv~~Qvvg~~~~de~~L~~a~~ie~~~~~~~~~ 245 (256)
||++++|++||++|+.+|+.+..|++|
T Consensus 445 ----------ig~~~~d~~LL~~A~~lE~~~~~~~~~ 471 (472)
T PRK07488 445 ----------DGPAGSDRRLLAIGRALERVLGRLPAP 471 (472)
T ss_pred ----------eCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999998666655
No 15
>PRK07235 amidase; Provisional
Probab=99.63 E-value=4.6e-16 Score=151.54 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=60.3
Q ss_pred hhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc--------cccccccchhhhhhCCceEEecCCCCCCCC
Q psy1969 65 LQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL--------TTSGVYYAMLANVIGFPSTNVPLGLGSNGL 135 (256)
Q Consensus 65 yQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~--------~~~~~~yT~~~NllG~PAisVP~G~~~~gl 135 (256)
|..+ ..|+++++++.++|+++|+||+||+|.+|++++.... ...+..||.+||++|+|+++||+|+. +||
T Consensus 396 y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~-~Gl 474 (502)
T PRK07235 396 YAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLV-DGL 474 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcC-CCC
Confidence 4334 4577789999999999999999999999999874210 01123489999999999999999985 788
Q ss_pred ceEEEE
Q psy1969 136 PVGLQV 141 (256)
Q Consensus 136 PvGlQi 141 (256)
|+|+||
T Consensus 475 PvGlQl 480 (502)
T PRK07235 475 PVGLML 480 (502)
T ss_pred CeEEEE
Confidence 888887
No 16
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=99.62 E-value=6.1e-16 Score=148.97 Aligned_cols=73 Identities=30% Similarity=0.453 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc----cccccccchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~----~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
..|..+++++.++|+++|+||+|+++.+||+++.... ......||.+||++|+|+++||+|+..+|+|+|+|+
T Consensus 364 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~GlPvGlql 440 (460)
T TIGR00132 364 KVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQI 440 (460)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCCCCeeEEE
Confidence 4566788899999999999999999999999974211 111234799999999999999999987788888877
No 17
>PRK08310 amidase; Provisional
Probab=99.61 E-value=7.8e-16 Score=145.72 Aligned_cols=87 Identities=25% Similarity=0.478 Sum_probs=64.2
Q ss_pred ccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccccc-----ccccccchhhhhhCCceEEec
Q psy1969 54 LGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILLT-----TSGVYYAMLANVIGFPSTNVP 127 (256)
Q Consensus 54 l~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~~-----~~~~~yT~~~NllG~PAisVP 127 (256)
+..|.......|..+ ..|+.+++++.++|+++|+||+|+++.+||+++..... .....||.+||++|+|+++||
T Consensus 281 ~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP 360 (395)
T PRK08310 281 FAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLP 360 (395)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEE
Confidence 333433344555554 45777899999999999999999999999998752110 112358999999999999999
Q ss_pred CCCCCCCCceEEEE
Q psy1969 128 LGLGSNGLPVGLQV 141 (256)
Q Consensus 128 ~G~~~~glPvGlQi 141 (256)
+|. .+|+|+|+||
T Consensus 361 ~g~-~~glPvglQi 373 (395)
T PRK08310 361 LAS-VDGAPFGLSL 373 (395)
T ss_pred CCC-CCCCCEEEEE
Confidence 986 4577777776
No 18
>PRK05962 amidase; Validated
Probab=99.61 E-value=1.1e-15 Score=145.98 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=64.9
Q ss_pred eeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccccc---c---c--ccccchhhhhh
Q psy1969 49 STNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILLT---T---S--GVYYAMLANVI 119 (256)
Q Consensus 49 aV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~~---~---~--~~~yT~~~Nll 119 (256)
.+..++..|.......|..+ ..|..+++++.++|+++|+||+|++|.++|+++..... . . .+.||.+||++
T Consensus 301 ~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~ 380 (424)
T PRK05962 301 RVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQF 380 (424)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCcccc
Confidence 33334444443334445554 45777899999999999999999999999998642110 0 1 12489999999
Q ss_pred CCceEEecCCCCCCCCceEEEE
Q psy1969 120 GFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 120 G~PAisVP~G~~~~glPvGlQi 141 (256)
|+|+++||+|. +|+|+|+|+
T Consensus 381 G~Pa~svP~g~--~glPvGlql 400 (424)
T PRK05962 381 DLCSITLPMPG--MALPAGLML 400 (424)
T ss_pred CCCeEEEECCC--CCCCEEEEE
Confidence 99999999973 577777777
No 19
>PRK07869 amidase; Provisional
Probab=99.61 E-value=1.8e-15 Score=146.06 Aligned_cols=73 Identities=30% Similarity=0.432 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc----------cccccccchhhhhhCCceEEecCCCCCCCCceE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL----------TTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVG 138 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~----------~~~~~~yT~~~NllG~PAisVP~G~~~~glPvG 138 (256)
..|+++++++.++|+++|+||+||+|.+||+++.... ......||.+||++|+|+++||+|+..+|+|+|
T Consensus 359 ~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvG 438 (468)
T PRK07869 359 ARLRRLRRVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVG 438 (468)
T ss_pred HHHHHHHHHHHHHHhcCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCee
Confidence 3455677889999999999999999999999974210 012235899999999999999999887888888
Q ss_pred EEE
Q psy1969 139 LQV 141 (256)
Q Consensus 139 lQi 141 (256)
+||
T Consensus 439 lQi 441 (468)
T PRK07869 439 MMF 441 (468)
T ss_pred EEE
Confidence 887
No 20
>PRK07487 amidase; Provisional
Probab=99.59 E-value=4.6e-15 Score=143.38 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=80.3
Q ss_pred hhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc---cc----cccccchhhhhhCCceEEecCCCCCCCCc
Q psy1969 65 LQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---TT----SGVYYAMLANVIGFPSTNVPLGLGSNGLP 136 (256)
Q Consensus 65 yQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---~~----~~~~yT~~~NllG~PAisVP~G~~~~glP 136 (256)
|..+ ..|+.+++++.++|+++|+||+|++|.+|++++.... .. ....+|.+||++|+|+++||+|+. +|||
T Consensus 353 ~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlP 431 (469)
T PRK07487 353 YMNALARRATLTRQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLV-GGVP 431 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccC-CCcc
Confidence 4444 4567789999999999999999999999998864210 00 012356789999999999999975 4777
Q ss_pred eEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeee
Q psy1969 137 VGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALH 216 (256)
Q Consensus 137 vGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~ 216 (256)
+|+|+
T Consensus 432 vGlQl--------------------------------------------------------------------------- 436 (469)
T PRK07487 432 VGVQL--------------------------------------------------------------------------- 436 (469)
T ss_pred eeEEE---------------------------------------------------------------------------
Confidence 77777
Q ss_pred EeecCCCchHHHHHHHHHHHHHhcCCC
Q psy1969 217 KVMAGPNQDRLCLAVAKKLEDIFYGWT 243 (256)
Q Consensus 217 Qvvg~~~~de~~L~~a~~ie~~~~~~~ 243 (256)
||++++|+.||++|+.+|+++..-+
T Consensus 437 --vg~~~~D~~lL~~a~~lE~~~~~~~ 461 (469)
T PRK07487 437 --VAGRFREDLCLAAGEAIEARGGPPT 461 (469)
T ss_pred --eCCCCCHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999985333
No 21
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.58 E-value=1.8e-15 Score=144.47 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=72.1
Q ss_pred CeeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc---cc--cccccchhhhhhCC
Q psy1969 48 PSTNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---TT--SGVYYAMLANVIGF 121 (256)
Q Consensus 48 PaV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---~~--~~~~yT~~~NllG~ 121 (256)
|.+..++..|.......|..+ ..|.+++.++.++|+++|+||+||+|.+||+++.... .. ..+.+|.++|++|+
T Consensus 303 ~~v~~~~~~g~~~s~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~ 382 (422)
T PLN02722 303 PGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGF 382 (422)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCC
Confidence 566666666666566667666 4577789999999999999999999999998864211 11 22457999999999
Q ss_pred ceEEecCCCCCCCCceEEEE
Q psy1969 122 PSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 122 PAisVP~G~~~~glPvGlQi 141 (256)
|+++||+|.. +|+|+|+||
T Consensus 383 PaisvP~g~~-~glPvGlqi 401 (422)
T PLN02722 383 CQVSIPLGLH-DNLPVSVSL 401 (422)
T ss_pred CEEEEeCCCC-CCCCEEEEE
Confidence 9999999986 678888877
No 22
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=99.58 E-value=3.2e-15 Score=143.98 Aligned_cols=73 Identities=33% Similarity=0.484 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccc----cccccccccchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEI----LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~----~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
..|.++++++.++|+++|+||+|+++.+||+++.. ......+.||.+||++|+|+++||+|+..+|+|+|+|+
T Consensus 365 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlql 441 (459)
T PRK00012 365 KVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLPVGLQL 441 (459)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCCCCEEEEE
Confidence 44667788999999999999999999999999652 11112234899999999999999999887788888777
No 23
>PRK07139 amidase; Provisional
Probab=99.58 E-value=3e-15 Score=143.64 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCccccccccc-ccccc-cchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILLT-TSGVY-YAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~~-~~~~~-yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
+.|+++++++.++|+++|+||+||++.+||+++..... ..... +|.++|++|+|+++||+| ..+|||+|+||
T Consensus 339 ~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g-~~~glPiGlqi 412 (439)
T PRK07139 339 KVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLPFNLAI 412 (439)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhhhcccCcccCCCCeEEEeCC-CCCCCCeEEEE
Confidence 45677889999999999999999999999998642100 01112 367899999999999999 56788888877
No 24
>PRK08137 amidase; Provisional
Probab=99.57 E-value=8e-15 Score=142.59 Aligned_cols=92 Identities=24% Similarity=0.211 Sum_probs=74.7
Q ss_pred HHHHHHHhc--cCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCCCCCceEEEEeeccccccccc
Q psy1969 75 ITDGEEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVT 152 (256)
Q Consensus 75 ~~~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi~~~~~~~~~~~ 152 (256)
+.++.++|+ ++|+||+|+++ ++|+++..........+|.+||++|+|+++||+|+. +|||+|+|+
T Consensus 396 ~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvQl----------- 462 (497)
T PRK08137 396 PEGIDAALKEHRLDALVAPTTG-PAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-QGLPVGLSF----------- 462 (497)
T ss_pred HHHHHHHHHhCCCCEEEeCCCC-CCcccccccccccccccccccHhhCCCeEEEeCCCC-CCcCeEEEE-----------
Confidence 368889997 68999999999 888886421111122478899999999999999986 688888877
Q ss_pred cccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeecCCCchHHHHHHH
Q psy1969 153 SFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAGPNQDRLCLAVA 232 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~de~~L~~a 232 (256)
||++++|+.||++|
T Consensus 463 ------------------------------------------------------------------ig~~~~d~~LL~~a 476 (497)
T PRK08137 463 ------------------------------------------------------------------IGAAWSEARLLELG 476 (497)
T ss_pred ------------------------------------------------------------------ECCCCCHHHHHHHH
Confidence 99999999999999
Q ss_pred HHHHHHhcCCCCCC
Q psy1969 233 KKLEDIFYGWTMPN 246 (256)
Q Consensus 233 ~~ie~~~~~~~~~~ 246 (256)
+.+|+.. .|.+++
T Consensus 477 ~~lE~~~-~~~~~p 489 (497)
T PRK08137 477 YAYEQAT-HARREP 489 (497)
T ss_pred HHHHHhc-CcCCCC
Confidence 9999996 575544
No 25
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=99.56 E-value=5.9e-15 Score=145.44 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=63.4
Q ss_pred ccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccc---cc-cccccccchhhhhhCCceEEecC
Q psy1969 54 LGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEI---LL-TTSGVYYAMLANVIGFPSTNVPL 128 (256)
Q Consensus 54 l~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~---~~-~~~~~~yT~~~NllG~PAisVP~ 128 (256)
+..+.......|..+ ..|+.+++++.++|+++|+||+||+|.+++..+.. .. ......||.++|++|+|+++||+
T Consensus 298 l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~ 377 (561)
T TIGR02713 298 ITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAVAVPA 377 (561)
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCchhccCCchhhhhhhhcccccccccCCceEEeec
Confidence 333333333444444 45777899999999999999999999987533211 00 11123589999999999999999
Q ss_pred CCCCCCCceEEEE
Q psy1969 129 GLGSNGLPVGLQV 141 (256)
Q Consensus 129 G~~~~glPvGlQi 141 (256)
|+..+|+|+|+|+
T Consensus 378 g~~~~GlPvGvql 390 (561)
T TIGR02713 378 GFRSDGLPFGVTL 390 (561)
T ss_pred ccCCCCCCEEEEE
Confidence 9887888888887
No 26
>PRK08186 allophanate hydrolase; Provisional
Probab=99.56 E-value=6.1e-15 Score=146.40 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=59.9
Q ss_pred chhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCccccccc----c-cccccccchhhhhhCCceEEecCCCCCCCC
Q psy1969 62 PVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEIL----L-TTSGVYYAMLANVIGFPSTNVPLGLGSNGL 135 (256)
Q Consensus 62 p~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~----~-~~~~~~yT~~~NllG~PAisVP~G~~~~gl 135 (256)
..+|..+ ..|+.+++++.++|+++|+||+||+|.+++ ++... . ......||.+||++|+|+++||+|+..+|+
T Consensus 343 a~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~Gl 421 (600)
T PRK08186 343 AADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGL 421 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCC
Confidence 3444444 457778999999999999999999999875 33210 0 111134899999999999999999888888
Q ss_pred ceEEEE
Q psy1969 136 PVGLQV 141 (256)
Q Consensus 136 PvGlQi 141 (256)
|+|+|+
T Consensus 422 PvGvql 427 (600)
T PRK08186 422 PFGVTL 427 (600)
T ss_pred CeeEEE
Confidence 888887
No 27
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=99.40 E-value=2.4e-13 Score=127.25 Aligned_cols=77 Identities=30% Similarity=0.444 Sum_probs=61.1
Q ss_pred hhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc----------cccccccchhhhhhCCceEEecCCCCCC
Q psy1969 65 LQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL----------TTSGVYYAMLANVIGFPSTNVPLGLGSN 133 (256)
Q Consensus 65 yQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~----------~~~~~~yT~~~NllG~PAisVP~G~~~~ 133 (256)
|..+ ..|..+++++.++|+++|+||+|+++.+|++++.... ......+|.++|++|+|+++||+|+..+
T Consensus 343 ~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~ 422 (441)
T PF01425_consen 343 YLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPD 422 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCC
Confidence 4444 3455789999999999999999999999999986421 1122457899999999999999998877
Q ss_pred CCceEEEE
Q psy1969 134 GLPVGLQV 141 (256)
Q Consensus 134 glPvGlQi 141 (256)
|||+|+|+
T Consensus 423 GlPvGvql 430 (441)
T PF01425_consen 423 GLPVGVQL 430 (441)
T ss_dssp TEEEEEEE
T ss_pred CcCEeEEE
Confidence 88888887
No 28
>PRK06828 amidase; Provisional
Probab=99.30 E-value=8.7e-12 Score=121.36 Aligned_cols=77 Identities=17% Similarity=0.344 Sum_probs=64.8
Q ss_pred HHHHHHHhc--cCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCCCCCceEEEEeeccccccccc
Q psy1969 75 ITDGEEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVT 152 (256)
Q Consensus 75 ~~~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi~~~~~~~~~~~ 152 (256)
++++.++|+ ++|+||+|+++.. .++|++|+|+++||+|+..+|||+|+||
T Consensus 410 ~~~~~~~~~~~~~D~ll~Pt~~~~-----------------~~~~~~GlPaisvP~G~~~~GlPvGlQl----------- 461 (491)
T PRK06828 410 EQGIDFALEKYNLDAILFPSYIGS-----------------TICAKAGYPSIAIPAGYMEGGRPFGITL----------- 461 (491)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCcc-----------------cchhhcCCCeEEeecCCCCCCcCeEEEE-----------
Confidence 368899998 4899999998753 2357999999999999877788888887
Q ss_pred cccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeecCCCchHHHHHHH
Q psy1969 153 SFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAGPNQDRLCLAVA 232 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~de~~L~~a 232 (256)
||++++|.+||++|
T Consensus 462 ------------------------------------------------------------------ig~~~~D~~LL~~A 475 (491)
T PRK06828 462 ------------------------------------------------------------------ASTAFSEGTLIKLA 475 (491)
T ss_pred ------------------------------------------------------------------ECCCCCHHHHHHHH
Confidence 99999999999999
Q ss_pred HHHHHHhcCCCCC
Q psy1969 233 KKLEDIFYGWTMP 245 (256)
Q Consensus 233 ~~ie~~~~~~~~~ 245 (256)
..+|++...+.+|
T Consensus 476 ~a~E~~~~~r~~P 488 (491)
T PRK06828 476 YAFEQATKHRKIP 488 (491)
T ss_pred HHHHHhCCCCCCC
Confidence 9999996533444
No 29
>PRK06707 amidase; Provisional
Probab=99.25 E-value=1.9e-11 Score=120.06 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhc--cCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCCCCCceEEEEeeccccc
Q psy1969 71 LASYITDGEEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVA 148 (256)
Q Consensus 71 r~~l~~~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi~~~~~~~ 148 (256)
|+.++..+.++|+ ++|+||+|.. ..+.++|++|+|++|||+|+..+|+|+|+|+
T Consensus 452 r~~~~~~~~~~~~~~~~Dall~p~~-----------------~~t~~an~aG~PaitvP~G~~~~GlP~Glql------- 507 (536)
T PRK06707 452 QENAKKELDRYLVEKGLDALVMINN-----------------EEVLLSAVAGYPELAVPAGYDNNGEPVGAVF------- 507 (536)
T ss_pred HHHHHHHHHHHHhhCCCCEEEecCC-----------------CcchhhHhcCCCeEEEecccCCCCCCeEEEE-------
Confidence 4456778899997 8999998721 1377899999999999999987888888888
Q ss_pred cccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeecCCCchHHH
Q psy1969 149 QSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAGPNQDRLC 228 (256)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~de~~ 228 (256)
||++|+|.+|
T Consensus 508 ----------------------------------------------------------------------ig~~~~e~~L 517 (536)
T PRK06707 508 ----------------------------------------------------------------------VGKQFGEKEL 517 (536)
T ss_pred ----------------------------------------------------------------------ECCCCChHHH
Confidence 9999999999
Q ss_pred HHHHHHHHHHhcCCCCCC
Q psy1969 229 LAVAKKLEDIFYGWTMPN 246 (256)
Q Consensus 229 L~~a~~ie~~~~~~~~~~ 246 (256)
|++|..+|++.+.+.+|.
T Consensus 518 L~~A~~~E~~~~~r~~p~ 535 (536)
T PRK06707 518 FNIGYAYEQQSKNRKPPK 535 (536)
T ss_pred HHHHHHHHHhCcCCCCCC
Confidence 999999999988777763
No 30
>PRK11910 amidase; Provisional
Probab=99.13 E-value=2.3e-10 Score=113.64 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhc--cCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCC-CCCceEEEEeecccc
Q psy1969 71 LASYITDGEEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGS-NGLPVGLQVCETASV 147 (256)
Q Consensus 71 r~~l~~~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~-~glPvGlQi~~~~~~ 147 (256)
++.++..+.++|+ ++|+||+|+... ...+ ..+++|+|+++||+|++. +|+|+|+|+
T Consensus 527 ~~~~~~~l~~~~~~~~lDalv~P~~~~-------------~~~~--~~~~aG~PaItVP~G~~~~~GlPvGlql------ 585 (615)
T PRK11910 527 IQSSQNELDSVLQKDKLDAVVTIGMGG-------------SVMF--LAPIAGNPELTIPAGYDEESNQPISLTF------ 585 (615)
T ss_pred HHHHHHHHHHHHHHCCCcEEEeCCCCC-------------cchh--hhhhcCCCeEEecccCCCCCCcCeEEEE------
Confidence 4455677888885 799999996210 1112 345999999999999886 688888888
Q ss_pred ccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeecCCCchHH
Q psy1969 148 AQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAGPNQDRL 227 (256)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~de~ 227 (256)
||++|+|++
T Consensus 586 -----------------------------------------------------------------------iG~~~sE~~ 594 (615)
T PRK11910 586 -----------------------------------------------------------------------ITARNSDKI 594 (615)
T ss_pred -----------------------------------------------------------------------ECCCCCHHH
Confidence 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q psy1969 228 CLAVAKKLEDIFYGWTMPNS 247 (256)
Q Consensus 228 ~L~~a~~ie~~~~~~~~~~~ 247 (256)
||++|.++|++.+.+.+|..
T Consensus 595 LL~~A~a~Eq~t~~r~~P~~ 614 (615)
T PRK11910 595 LLNMGYAYEQQSKNRKSPNL 614 (615)
T ss_pred HHHHHHHHHHhcCCCCCCCC
Confidence 99999999999998887764
No 31
>PRK06565 amidase; Validated
Probab=99.02 E-value=1.6e-09 Score=106.83 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=74.3
Q ss_pred HHHHHhc--cCCceeccCCCCCCccccccccc--------ccccccchh-hhhhCCceEEecCCCC-CCCCceEEEEeec
Q psy1969 77 DGEEILG--TDGVLIYPTFPAQAQRHGEILLT--------TSGVYYAML-ANVIGFPSTNVPLGLG-SNGLPVGLQVCET 144 (256)
Q Consensus 77 ~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~~~--------~~~~~yT~~-~NllG~PAisVP~G~~-~~glPvGlQi~~~ 144 (256)
.+++.|. ++|+||.|+.+..++..+..... ....+.+.. .+++|+|+|+||+|+. +.|||+||++
T Consensus 457 ~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~--- 533 (566)
T PRK06565 457 DLEDWMDGLGLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTF--- 533 (566)
T ss_pred HHHHHHHhcCCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEe---
Confidence 4555664 58999999999888876643111 011233444 4999999999999987 4688888888
Q ss_pred cccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeecCCCc
Q psy1969 145 ASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAGPNQ 224 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~ 224 (256)
+|+.|+
T Consensus 534 --------------------------------------------------------------------------~G~a~~ 539 (566)
T PRK06565 534 --------------------------------------------------------------------------AGRAYD 539 (566)
T ss_pred --------------------------------------------------------------------------ecCCcc
Confidence 999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCC
Q psy1969 225 DRLCLAVAKKLEDIFYGWTMPNSTG 249 (256)
Q Consensus 225 de~~L~~a~~ie~~~~~~~~~~~~~ 249 (256)
|.+||++|..+|++.+..+.|..+-
T Consensus 540 e~~Ll~~A~a~E~~~~~r~~p~~~~ 564 (566)
T PRK06565 540 DNALLRFAAAFEATGSRRMVPPRTP 564 (566)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998888777654
No 32
>KOG1211|consensus
Probab=98.65 E-value=3.9e-08 Score=95.27 Aligned_cols=62 Identities=34% Similarity=0.559 Sum_probs=45.4
Q ss_pred HHhccCCceeccCCCCCCcccccc----cccccccccchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 80 EILGTDGVLIYPTFPAQAQRHGEI----LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 80 ~~~~~~D~Il~Pt~p~~Ap~~~~~----~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
+.++++|.|+.||.+.+....-.. ......+.++.+.|+.|+|+++||+|...+|+|+|+|+
T Consensus 409 ~~~~~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi 474 (506)
T KOG1211|consen 409 AALEGVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQI 474 (506)
T ss_pred cccccCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCceEEEe
Confidence 566789999999944333322211 11223467899999999999999999988888888888
No 33
>PRK06529 amidase; Provisional
Probab=98.11 E-value=3e-06 Score=82.40 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=61.1
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc-------------------------c----cCCcccchhhhccCCCeeeeecc
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL-------------------------T----TSGVYYAMLSNVIGFPSTNVPLG 55 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~-------------------------~----~~~~~~t~~~n~~GePaV~~pl~ 55 (256)
.++|+++|+||+||+|.+||++++... . .....||.++|++|.|++.+|++
T Consensus 366 ~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g 445 (482)
T PRK06529 366 ASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTY 445 (482)
T ss_pred HHHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecC
Confidence 468999999999999999998864110 0 01114899999999999999998
Q ss_pred ccCCCCchhhhhh--hhHHHHHHHHHHHhccC
Q psy1969 56 LGSNGLPVGLQAG--QQLASYITDGEEILGTD 85 (256)
Q Consensus 56 ~g~~~lp~gyQla--~~r~~l~~~~~~~~~~~ 85 (256)
....++|.++|++ ...+....++.+.+++.
T Consensus 446 ~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~ 477 (482)
T PRK06529 446 ETKEGLPMGVQLIAAKGREDLLLGIAEQFEAA 477 (482)
T ss_pred cCCCCCceeEEEecCCCcHHHHHHHHHHHHhc
Confidence 8777899999998 33455555566666654
No 34
>PRK12470 amidase; Provisional
Probab=98.09 E-value=3.6e-06 Score=81.52 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=61.2
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc---------ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLAS 73 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~---------~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~ 73 (256)
.++|+++|+||+||+|.+||++++... ......||.++|++|.|.+++|++....++|.++|++ ...+.
T Consensus 360 ~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~ 439 (462)
T PRK12470 360 QSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEA 439 (462)
T ss_pred HHHHhCCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHH
Confidence 468999999999999999998864210 0111247999999999999999987767899999998 33555
Q ss_pred HHHHHHHHhcc
Q psy1969 74 YITDGEEILGT 84 (256)
Q Consensus 74 l~~~~~~~~~~ 84 (256)
...++...+++
T Consensus 440 ~LL~~A~~le~ 450 (462)
T PRK12470 440 TLLALAAQIES 450 (462)
T ss_pred HHHHHHHHHHc
Confidence 55566666765
No 35
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=3.7e-06 Score=81.89 Aligned_cols=79 Identities=28% Similarity=0.401 Sum_probs=60.4
Q ss_pred HhhhcCCCEEEecCCCCCccccCc-c---c----cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGE-I---L----LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASY 74 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~-~---~----~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l 74 (256)
.++|++||+||+||+|.+||.+++ . . ....+ .+|.++|++|.|.+++|++....++|.++|++ ...+..
T Consensus 377 ~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~-~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~ 455 (475)
T COG0154 377 DKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLD-VFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDAT 455 (475)
T ss_pred HHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhc-cccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHH
Confidence 578999999999999999999987 1 1 11222 58999999999999999998767999999998 223444
Q ss_pred HHHHHHHhcc
Q psy1969 75 ITDGEEILGT 84 (256)
Q Consensus 75 ~~~~~~~~~~ 84 (256)
..++...+++
T Consensus 456 LL~~a~~~E~ 465 (475)
T COG0154 456 LLRLAAALEQ 465 (475)
T ss_pred HHHHHHHHHH
Confidence 4444555543
No 36
>PRK07042 amidase; Provisional
Probab=98.07 E-value=3.7e-06 Score=81.48 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=60.5
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc------cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL------LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYIT 76 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~------~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~ 76 (256)
.++|+++|+||+||+|.+||+++... .......||.++|++|.|.+.+|++....++|.++|++ ...+....
T Consensus 363 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL 442 (464)
T PRK07042 363 ARLFAEFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVL 442 (464)
T ss_pred HHHHhcCCEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHH
Confidence 46899999999999999999886311 01111257999999999999999987767899999998 33455555
Q ss_pred HHHHHhcc
Q psy1969 77 DGEEILGT 84 (256)
Q Consensus 77 ~~~~~~~~ 84 (256)
++.+.+++
T Consensus 443 ~~a~~le~ 450 (464)
T PRK07042 443 RLAKAFEG 450 (464)
T ss_pred HHHHHHHH
Confidence 56666664
No 37
>PRK06061 amidase; Provisional
Probab=98.03 E-value=5.1e-06 Score=80.94 Aligned_cols=80 Identities=29% Similarity=0.398 Sum_probs=60.7
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc----c-----cCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL----T-----TSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLAS 73 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~----~-----~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~ 73 (256)
.++|+++|+||+||+|.+||.+++... . .....||.++|++|.|.+.+|++....++|.++|++ ...+.
T Consensus 376 ~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~ 455 (483)
T PRK06061 376 GSIFDIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEP 455 (483)
T ss_pred HHHHhcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHH
Confidence 468999999999999999999875210 0 111248999999999999999987667899999998 33455
Q ss_pred HHHHHHHHhcc
Q psy1969 74 YITDGEEILGT 84 (256)
Q Consensus 74 l~~~~~~~~~~ 84 (256)
...++.+.+++
T Consensus 456 ~LL~~A~~le~ 466 (483)
T PRK06061 456 LLISLAAQLEA 466 (483)
T ss_pred HHHHHHHHHHh
Confidence 55556666665
No 38
>PRK07235 amidase; Provisional
Probab=98.03 E-value=4.1e-06 Score=82.02 Aligned_cols=79 Identities=27% Similarity=0.278 Sum_probs=59.0
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc--------ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL--------TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASY 74 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~--------~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l 74 (256)
.++|+++|+||+||+|.+||++++... ......||.++|++|.|++++|++.. .++|.++|++ ...+..
T Consensus 411 ~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~-~GlPvGlQlvg~~~~D~~ 489 (502)
T PRK07235 411 DEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLV-DGLPVGLMLVGRHFDEAT 489 (502)
T ss_pred HHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcC-CCCCeEEEEeCCCCCHHH
Confidence 468899999999999999999864211 11123589999999999999999874 6899999998 334444
Q ss_pred HHHHHHHhcc
Q psy1969 75 ITDGEEILGT 84 (256)
Q Consensus 75 ~~~~~~~~~~ 84 (256)
..+++..|++
T Consensus 490 lL~~A~~~E~ 499 (502)
T PRK07235 490 ILRAAAAFEA 499 (502)
T ss_pred HHHHHHHHHh
Confidence 5555555553
No 39
>PRK06170 amidase; Provisional
Probab=98.02 E-value=4.6e-06 Score=81.27 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=59.9
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc------ccc--------CCcccchhhhccCCCeeeeeccccCCCCchhhhhh--
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL------LTT--------SGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG-- 68 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~------~~~--------~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla-- 68 (256)
.++|+++|+||+||+|.+||+++... ... ..+.||.++|++|.|.+++|++....++|.++|++
T Consensus 385 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~ 464 (490)
T PRK06170 385 RRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGP 464 (490)
T ss_pred HHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCCeEEEECCcCCCCCceeEEEecC
Confidence 46789999999999999999986421 001 11247889999999999999987667899999998
Q ss_pred hhHHHHHHHHHHHhcc
Q psy1969 69 QQLASYITDGEEILGT 84 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~ 84 (256)
..++....++.+.+++
T Consensus 465 ~~~D~~LL~~a~~lE~ 480 (490)
T PRK06170 465 ALEDRTPLRLAELLEE 480 (490)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3345555555566654
No 40
>PRK07869 amidase; Provisional
Probab=98.01 E-value=5.2e-06 Score=80.49 Aligned_cols=80 Identities=29% Similarity=0.379 Sum_probs=60.6
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc----------cCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT----------TSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLA 72 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~----------~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~ 72 (256)
.++|+++|+||+||+|.+||++++.... .....||.++|++|.|.+++|++....++|.++|++ ...+
T Consensus 369 ~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D 448 (468)
T PRK07869 369 ARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDE 448 (468)
T ss_pred HHHHhcCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCch
Confidence 4689999999999999999998642100 011247999999999999999987667899999998 3345
Q ss_pred HHHHHHHHHhcc
Q psy1969 73 SYITDGEEILGT 84 (256)
Q Consensus 73 ~l~~~~~~~~~~ 84 (256)
....++.+.+++
T Consensus 449 ~~lL~~A~~le~ 460 (468)
T PRK07869 449 ATLLELAYELEE 460 (468)
T ss_pred HHHHHHHHHHHh
Confidence 555556666664
No 41
>PRK06169 putative amidase; Provisional
Probab=98.01 E-value=8.7e-06 Score=78.91 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=60.8
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc---ccc----CCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL---LTT----SGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYI 75 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~---~~~----~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~ 75 (256)
.++|+++|+||+||+|.+||+++... ... ....||.++|++|.|.+.+|++....++|.++|++ ...+...
T Consensus 366 ~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~l 445 (466)
T PRK06169 366 GAFHERYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLV 445 (466)
T ss_pred HHHHhcCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHH
Confidence 46788999999999999999886421 000 11258999999999999999988777899999998 3355555
Q ss_pred HHHHHHhcc
Q psy1969 76 TDGEEILGT 84 (256)
Q Consensus 76 ~~~~~~~~~ 84 (256)
.++.+.+++
T Consensus 446 L~~a~~le~ 454 (466)
T PRK06169 446 LRVARAYEQ 454 (466)
T ss_pred HHHHHHHHh
Confidence 556666665
No 42
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=98.00 E-value=6.2e-06 Score=79.67 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=57.7
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc----cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL----LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDG 78 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~----~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~ 78 (256)
.++|+++|+||+||+|.+||+++... .......||.++|++|.|.+.+|++....++|.++|++ ...+....++
T Consensus 375 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~ 454 (459)
T PRK00012 375 EKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNV 454 (459)
T ss_pred HHHHhcCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHH
Confidence 46888999999999999999986421 11111237999999999999999988777899999998 2344444444
Q ss_pred HHHh
Q psy1969 79 EEIL 82 (256)
Q Consensus 79 ~~~~ 82 (256)
.+.+
T Consensus 455 a~~~ 458 (459)
T PRK00012 455 AYAF 458 (459)
T ss_pred HHHh
Confidence 4443
No 43
>PRK09201 amidase; Provisional
Probab=97.98 E-value=8.5e-06 Score=79.00 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=60.4
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccccc---------CCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLTT---------SGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLAS 73 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~~---------~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~ 73 (256)
.++|+++|+||+||+|.+||+++...... ....||.++|++|.|.+.+|++. ..++|.++|++ ...+.
T Consensus 364 ~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQivg~~~~D~ 442 (465)
T PRK09201 364 LELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRT-PGGLPIGVQLIAAPWRED 442 (465)
T ss_pred HHHHhcCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCC-CCCcCeEEEEECCCCCHH
Confidence 46899999999999999999986521101 11148999999999999999985 34899999998 33555
Q ss_pred HHHHHHHHhccC
Q psy1969 74 YITDGEEILGTD 85 (256)
Q Consensus 74 l~~~~~~~~~~~ 85 (256)
...++...+++.
T Consensus 443 ~lL~~A~~le~~ 454 (465)
T PRK09201 443 LALRAAAALEQQ 454 (465)
T ss_pred HHHHHHHHHHhh
Confidence 566667777764
No 44
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=97.97 E-value=7.4e-06 Score=79.10 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=59.5
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccccc--------CC-cccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLTT--------SG-VYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLAS 73 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~~--------~~-~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~ 73 (256)
.++|+++|+||+||+|.+||+++...... .+ ..||.++|++|.|.+++|++.. .++|.++|++ ...+.
T Consensus 357 ~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlQivg~~~~D~ 435 (452)
T TIGR02715 357 RELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRP-GRLPIGVQLIAAPWRED 435 (452)
T ss_pred HHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCC-CCCCeEEEEECCCCCHH
Confidence 56899999999999999999986421000 11 1479999999999999999864 5799999998 33555
Q ss_pred HHHHHHHHhcc
Q psy1969 74 YITDGEEILGT 84 (256)
Q Consensus 74 l~~~~~~~~~~ 84 (256)
...++.+.+++
T Consensus 436 ~lL~~a~~le~ 446 (452)
T TIGR02715 436 LCLRAAAVLER 446 (452)
T ss_pred HHHHHHHHHHH
Confidence 55666666665
No 45
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=97.96 E-value=8.8e-06 Score=78.67 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=59.1
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc----ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDG 78 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~----~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~ 78 (256)
.++|+++|+||+||+|.+||.+++... ......||.++|++|.|.+++|++....++|.++|.+ ...+....++
T Consensus 374 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~ 453 (460)
T TIGR00132 374 LKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQV 453 (460)
T ss_pred HHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHH
Confidence 468899999999999999999864210 1111137999999999999999988767899999998 3345545555
Q ss_pred HHHhc
Q psy1969 79 EEILG 83 (256)
Q Consensus 79 ~~~~~ 83 (256)
.+.++
T Consensus 454 A~~le 458 (460)
T TIGR00132 454 SYAFE 458 (460)
T ss_pred HHHHh
Confidence 55554
No 46
>PRK07139 amidase; Provisional
Probab=97.91 E-value=9.7e-06 Score=78.12 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=55.4
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc---cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL---LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGE 79 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~---~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~ 79 (256)
.++|+++|+||+||+|.+||++++.. ..... .+|.++|++|.|++++|++ ...++|.++|++ ...+....+++
T Consensus 349 ~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~-~~t~~~nl~G~PaisvP~g-~~~glPiGlqivg~~~~D~~LL~~A 426 (439)
T PRK07139 349 ESIHNKFDIVIYPAYADIAPDIDENENKSDNYMD-YILTISNLVGNPSLSIPLG-KYNNLPFNLAIDSKIYDDEKLLSYS 426 (439)
T ss_pred HHHHhcCCEEEeCCCCCCCCcccccccchhhhhh-hcccCcccCCCCeEEEeCC-CCCCCCeEEEEECCCCChHHHHHHH
Confidence 46899999999999999999886421 11111 1367899999999999998 456899999997 22444444444
Q ss_pred HHhc
Q psy1969 80 EILG 83 (256)
Q Consensus 80 ~~~~ 83 (256)
+.++
T Consensus 427 ~~lE 430 (439)
T PRK07139 427 LYIE 430 (439)
T ss_pred HHHH
Confidence 4444
No 47
>PRK07488 indole acetimide hydrolase; Validated
Probab=97.91 E-value=1e-05 Score=78.53 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=59.5
Q ss_pred Hhhhc--CCCEEEecCCCCCccccCccc---------ccc-CCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hh
Q psy1969 5 LEILG--TDGVLIYPTFPAQAQRHGEIL---------LTT-SGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQ 70 (256)
Q Consensus 5 ~~~f~--~~D~LL~Pt~p~~A~~~~~~~---------~~~-~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~ 70 (256)
.++|+ ++|+||+||+|.+||++++.. ... ....+|.++|++|.|.+.+|++....++|.++|++ ..
T Consensus 370 ~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~ 449 (472)
T PRK07488 370 RQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAG 449 (472)
T ss_pred HHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCC
Confidence 45777 789999999999999986531 001 11147899999999999999987666899999998 33
Q ss_pred HHHHHHHHHHHhcc
Q psy1969 71 LASYITDGEEILGT 84 (256)
Q Consensus 71 r~~l~~~~~~~~~~ 84 (256)
.+....+++..|++
T Consensus 450 ~d~~LL~~A~~lE~ 463 (472)
T PRK07488 450 SDRRLLAIGRALER 463 (472)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555556666664
No 48
>PLN02722 indole-3-acetamide amidohydrolase
Probab=97.90 E-value=9.5e-06 Score=77.86 Aligned_cols=63 Identities=30% Similarity=0.469 Sum_probs=50.9
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc----c-CCcccchhhhccCCCeeeeeccccCCCCchhhhhh
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT----T-SGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG 68 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~----~-~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla 68 (256)
.++|++||+||+||+|.+||+++..... . ....+|.++|++|.|.+.+|++.. .++|.++|++
T Consensus 335 ~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlqiv 402 (422)
T PLN02722 335 TTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLH-DNLPVSVSLL 402 (422)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCC-CCCCEEEEEE
Confidence 4789999999999999999988642111 1 112478999999999999999876 4799999998
No 49
>PRK07487 amidase; Provisional
Probab=97.89 E-value=1.5e-05 Score=77.46 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=58.0
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc---c----CCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT---T----SGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYI 75 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~---~----~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~ 75 (256)
.++|+++|+||+||+|.+||+++..... . ....+|.++|++|.|.+++|++.. .++|.++|++ ...+...
T Consensus 368 ~~~~~~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlQlvg~~~~D~~l 446 (469)
T PRK07487 368 QLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLV-GGVPVGVQLVAGRFREDLC 446 (469)
T ss_pred HHHHhcCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccC-CCcceeEEEeCCCCCHHHH
Confidence 4689999999999999999988642110 1 011246788999999999999865 4899999998 3345555
Q ss_pred HHHHHHhcc
Q psy1969 76 TDGEEILGT 84 (256)
Q Consensus 76 ~~~~~~~~~ 84 (256)
.++.+.+++
T Consensus 447 L~~a~~lE~ 455 (469)
T PRK07487 447 LAAGEAIEA 455 (469)
T ss_pred HHHHHHHHH
Confidence 556666664
No 50
>PRK07486 amidase; Provisional
Probab=97.87 E-value=1.2e-05 Score=78.35 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=59.8
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc-c--------c-cCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL-L--------T-TSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLA 72 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~-~--------~-~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~ 72 (256)
.++|+++|+||+||+|.+||.+++.. . . .....+|.++|++|.|.+.+|++....++|.++|++ ...+
T Consensus 378 ~~~~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D 457 (484)
T PRK07486 378 LRLFERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRAD 457 (484)
T ss_pred HHHHhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCH
Confidence 46899999999999999998775310 0 0 111136789999999999999987667899999998 3345
Q ss_pred HHHHHHHHHhccC
Q psy1969 73 SYITDGEEILGTD 85 (256)
Q Consensus 73 ~l~~~~~~~~~~~ 85 (256)
....++.+.+++.
T Consensus 458 ~~lL~~a~~le~~ 470 (484)
T PRK07486 458 LAVLQLAHAYEQA 470 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 5555566666653
No 51
>PRK06102 hypothetical protein; Provisional
Probab=97.87 E-value=1.2e-05 Score=77.67 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=55.9
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc---c-----ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL---L-----TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASY 74 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~---~-----~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l 74 (256)
.++|+ +|+||+||+|.+||+++... . ......||.++|++|.|.+.+|++....++|.++|++ ...+..
T Consensus 359 ~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~ 437 (452)
T PRK06102 359 TRELG-GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDER 437 (452)
T ss_pred HHHHc-CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHH
Confidence 35677 89999999999999886421 0 0111247999999999999999987767899999998 223444
Q ss_pred HHHHHHHhc
Q psy1969 75 ITDGEEILG 83 (256)
Q Consensus 75 ~~~~~~~~~ 83 (256)
..++.+.++
T Consensus 438 lL~~a~~le 446 (452)
T PRK06102 438 LLRAALAVE 446 (452)
T ss_pred HHHHHHHHH
Confidence 344444443
No 52
>PRK08310 amidase; Provisional
Probab=97.79 E-value=1.7e-05 Score=75.35 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=57.0
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc-----cCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT-----TSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITD 77 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~-----~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~ 77 (256)
.++|+++|+||+||+|.+||+++..... .....||.++|++|.|++.+|++. ..++|.++|++ ...+....+
T Consensus 307 ~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~-~~glPvglQivg~~~~D~~lL~ 385 (395)
T PRK08310 307 AALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLAS-VDGAPFGLSLIGPRGSDRSLLA 385 (395)
T ss_pred HHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCC-CCCCCEEEEEECCCCCHHHHHH
Confidence 4689999999999999999998652111 111247999999999999999975 45899999998 234444444
Q ss_pred HHHHhc
Q psy1969 78 GEEILG 83 (256)
Q Consensus 78 ~~~~~~ 83 (256)
+.+.++
T Consensus 386 ~a~~le 391 (395)
T PRK08310 386 LAQTIA 391 (395)
T ss_pred HHHHHH
Confidence 444444
No 53
>PRK07056 amidase; Provisional
Probab=97.71 E-value=2.8e-05 Score=75.22 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=49.4
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc---ccc---C--CcccchhhhccCCCeeeeeccccCCCCchhhhhh
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL---LTT---S--GVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG 68 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~---~~~---~--~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla 68 (256)
.++|+++|+||+||+|.+||++++.. ... . ...||.++|++|.|.+++|++.. .++|.++|++
T Consensus 361 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~-~glPvGlqiv 431 (454)
T PRK07056 361 AARLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPCHAP-GEAPVGLMLA 431 (454)
T ss_pred HHHHccCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchhcCCCEEEEeCCCC-CCCCEEEEEE
Confidence 46889999999999999999986421 001 0 11378899999999999999853 4799999997
No 54
>PRK05962 amidase; Validated
Probab=97.66 E-value=4e-05 Score=73.49 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=54.6
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc------ccCC--cccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL------TTSG--VYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASY 74 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~------~~~~--~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l 74 (256)
.++|+++|+||+||+|.+||++++... .... ..||.++|++|.|.+.+|++. .++|.++|++ ...+..
T Consensus 332 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~--~glPvGlqlvg~~~~D~~ 409 (424)
T PRK05962 332 DERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG--MALPAGLMLTARNGSDRR 409 (424)
T ss_pred HHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC--CCCCEEEEEECCCCCHHH
Confidence 567889999999999999999864210 0111 137999999999999999863 4789999998 223443
Q ss_pred HHHHHHHhc
Q psy1969 75 ITDGEEILG 83 (256)
Q Consensus 75 ~~~~~~~~~ 83 (256)
..++.+.++
T Consensus 410 lL~~a~~le 418 (424)
T PRK05962 410 LLAAAASVE 418 (424)
T ss_pred HHHHHHHHH
Confidence 333444443
No 55
>PRK08137 amidase; Provisional
Probab=97.63 E-value=5.4e-05 Score=73.98 Aligned_cols=77 Identities=25% Similarity=0.209 Sum_probs=56.6
Q ss_pred Hhhhc--CCCEEEecCCCCCccccCccc-cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHH
Q psy1969 5 LEILG--TDGVLIYPTFPAQAQRHGEIL-LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGE 79 (256)
Q Consensus 5 ~~~f~--~~D~LL~Pt~p~~A~~~~~~~-~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~ 79 (256)
.++|+ ++|+||+||+| +||++++.. ....+ .+|.++|++|.|.+++|++.. .++|.++|++ ...+....++.
T Consensus 400 ~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~~~~~~-~~t~~~nl~G~PaisvP~g~~-~GlPvGvQlig~~~~d~~LL~~a 476 (497)
T PRK08137 400 DAALKEHRLDALVAPTTG-PAWLIDLINGDSFGG-SSSTPAAVAGYPHLTVPMGQV-QGLPVGLSFIGAAWSEARLLELG 476 (497)
T ss_pred HHHHHhCCCCEEEeCCCC-CCccccccccccccc-ccccccHhhCCCeEEEeCCCC-CCcCeEEEEECCCCCHHHHHHHH
Confidence 36776 68999999999 888886421 11122 368899999999999999875 5899999998 33455555556
Q ss_pred HHhcc
Q psy1969 80 EILGT 84 (256)
Q Consensus 80 ~~~~~ 84 (256)
..+++
T Consensus 477 ~~lE~ 481 (497)
T PRK08137 477 YAYEQ 481 (497)
T ss_pred HHHHH
Confidence 66664
No 56
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=97.56 E-value=7.2e-05 Score=74.34 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=57.6
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc--cC--CcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT--TS--GVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDG 78 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~--~~--~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~ 78 (256)
.++|+++|+||+||+|..++..+..... .. ...||.++|++|.|++.+|++....++|.++|++ ...+....++
T Consensus 324 ~~~~~~~DvLl~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~ 403 (561)
T TIGR02713 324 EALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASL 403 (561)
T ss_pred HHHHhcCCEEEeCCCCCCCCchhccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHH
Confidence 5689999999999999987543211100 00 0148999999999999999987667899999998 3345555555
Q ss_pred HHHhcc
Q psy1969 79 EEILGT 84 (256)
Q Consensus 79 ~~~~~~ 84 (256)
.+.|++
T Consensus 404 A~~le~ 409 (561)
T TIGR02713 404 GRRLQA 409 (561)
T ss_pred HHHHHh
Confidence 566654
No 57
>PRK08186 allophanate hydrolase; Provisional
Probab=97.48 E-value=0.00011 Score=73.66 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=56.3
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccccc---CC-cccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLTT---SG-VYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDG 78 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~~---~~-~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~ 78 (256)
.++|+++|+||+||+|.+++........+ .. ..||.++|++|.|++.+|++....++|.++|++ ...+....++
T Consensus 361 ~~~~~~~D~Ll~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~ 440 (600)
T PRK08186 361 EAVLAGIDALLVPTAPTHPTIAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADL 440 (600)
T ss_pred HHHhcCCCEEEeCCCCCCCCchhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHH
Confidence 46889999999999999875332111000 01 148999999999999999987667899999998 2344444445
Q ss_pred HHHhcc
Q psy1969 79 EEILGT 84 (256)
Q Consensus 79 ~~~~~~ 84 (256)
.+.|++
T Consensus 441 A~~le~ 446 (600)
T PRK08186 441 AARLQA 446 (600)
T ss_pred HHHHHh
Confidence 555543
No 58
>KOG1212|consensus
Probab=97.47 E-value=8.2e-05 Score=73.25 Aligned_cols=76 Identities=42% Similarity=0.654 Sum_probs=59.2
Q ss_pred hhcCCCEEEecCCCCCccccCccccccCCcccchhhhccCCC-------------------------eeeeecc-ccCCC
Q psy1969 7 ILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFP-------------------------STNVPLG-LGSNG 60 (256)
Q Consensus 7 ~f~~~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GeP-------------------------aV~~pl~-~g~~~ 60 (256)
...+.|+||||++|.+||+|+.......++.||..||.+++| ....+++ .+..+
T Consensus 444 ~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~~D~~~~~~~~g~~~s~G 523 (560)
T KOG1212|consen 444 LLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPMNDKWATKVPKGSLDSRG 523 (560)
T ss_pred HcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhcccccccccHHHHhCcccccCCCC
Confidence 456789999999999999999887778888999999999999 6666666 56678
Q ss_pred Cchhhhhh--hhHHHHHHHHHHHh
Q psy1969 61 LPVGLQAG--QQLASYITDGEEIL 82 (256)
Q Consensus 61 lp~gyQla--~~r~~l~~~~~~~~ 82 (256)
+|.++|.+ .-++++..++++.+
T Consensus 524 lPigVQVVa~p~~delcL~va~~l 547 (560)
T KOG1212|consen 524 LPIGVQVVANPNQDELCLAVAREL 547 (560)
T ss_pred CceeEEEecCCCchHHHHHHHHHH
Confidence 99999997 23444433333333
No 59
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=97.31 E-value=7.8e-05 Score=69.78 Aligned_cols=64 Identities=33% Similarity=0.502 Sum_probs=52.1
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc------cCC----cccchhhhccCCCeeeeeccccCCCCchhhhhh
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT------TSG----VYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG 68 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~------~~~----~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla 68 (256)
.++|+++|+||+||++.+||.++..... ..+ ..+|.++|.+|.|.+.+|++....++|.++|.+
T Consensus 358 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlv 431 (441)
T PF01425_consen 358 DELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLV 431 (441)
T ss_dssp HHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEE
Confidence 5688999999999999999999865311 111 256899999999999999998777999999997
No 60
>PRK06828 amidase; Provisional
Probab=95.93 E-value=0.0073 Score=59.22 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=47.7
Q ss_pred Hhhhc--CCCEEEecCCCCCccccCccccccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHHH
Q psy1969 5 LEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGEE 80 (256)
Q Consensus 5 ~~~f~--~~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~~ 80 (256)
+++|+ ++|+||+||+|..+ +.+++|.|.+++|++....++|.++|++ ...+....++..
T Consensus 414 ~~~~~~~~~D~ll~Pt~~~~~-----------------~~~~~GlPaisvP~G~~~~GlPvGlQlig~~~~D~~LL~~A~ 476 (491)
T PRK06828 414 DFALEKYNLDAILFPSYIGST-----------------ICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAY 476 (491)
T ss_pred HHHHHhcCCCEEEeCCCCccc-----------------chhhcCCCeEEeecCCCCCCcCeEEEEECCCCCHHHHHHHHH
Confidence 46787 48999999988642 2468999999999987666899999998 334555555666
Q ss_pred Hhcc
Q psy1969 81 ILGT 84 (256)
Q Consensus 81 ~~~~ 84 (256)
.+|+
T Consensus 477 a~E~ 480 (491)
T PRK06828 477 AFEQ 480 (491)
T ss_pred HHHH
Confidence 6665
No 61
>PRK06707 amidase; Provisional
Probab=92.29 E-value=0.14 Score=50.90 Aligned_cols=63 Identities=25% Similarity=0.201 Sum_probs=46.5
Q ss_pred Hhhhc--CCCEEEecCCCCCccccCccccccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHHH
Q psy1969 5 LEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGEE 80 (256)
Q Consensus 5 ~~~f~--~~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~~ 80 (256)
+++|+ ++|+||+|.. ..+.++|.+|.|.+.+|++....++|.++|++ ...+....++..
T Consensus 460 ~~~~~~~~~Dall~p~~-----------------~~t~~an~aG~PaitvP~G~~~~GlP~Glqlig~~~~e~~LL~~A~ 522 (536)
T PRK06707 460 DRYLVEKGLDALVMINN-----------------EEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNIGY 522 (536)
T ss_pred HHHHhhCCCCEEEecCC-----------------CcchhhHhcCCCeEEEecccCCCCCCeEEEEECCCCChHHHHHHHH
Confidence 35677 8999999831 13678899999999999987667899999998 234444455566
Q ss_pred Hhcc
Q psy1969 81 ILGT 84 (256)
Q Consensus 81 ~~~~ 84 (256)
.||+
T Consensus 523 ~~E~ 526 (536)
T PRK06707 523 AYEQ 526 (536)
T ss_pred HHHH
Confidence 6664
No 62
>KOG1211|consensus
Probab=91.76 E-value=0.11 Score=51.15 Aligned_cols=64 Identities=31% Similarity=0.477 Sum_probs=48.1
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc----cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL----LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG 68 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~----~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla 68 (256)
.+.++++|+|++||.|-+.....+.. ....+..++++.|..|.|.+.+|++....++|.+.|.+
T Consensus 408 ~~~~~~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~ 475 (506)
T KOG1211|consen 408 KAALEGVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIM 475 (506)
T ss_pred ccccccCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCceEEEee
Confidence 35789999999999444444333321 11222368999999999999999998778899999987
No 63
>PRK11910 amidase; Provisional
Probab=86.08 E-value=0.76 Score=46.45 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=43.4
Q ss_pred hhhc--CCCEEEecCCCCCccccCccccccCCcccchhhhccCCCeeeeeccccC-CCCchhhhhh--hhHHHHHHHHHH
Q psy1969 6 EILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGS-NGLPVGLQAG--QQLASYITDGEE 80 (256)
Q Consensus 6 ~~f~--~~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GePaV~~pl~~g~-~~lp~gyQla--~~r~~l~~~~~~ 80 (256)
++|+ ++|+||+|+.. +...++ .+.+|.|.+.+|++... .++|.++|.+ ...+....+++.
T Consensus 536 ~~~~~~~lDalv~P~~~-------------~~~~~~--~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE~~LL~~A~ 600 (615)
T PRK11910 536 SVLQKDKLDAVVTIGMG-------------GSVMFL--APIAGNPELTIPAGYDEESNQPISLTFITARNSDKILLNMGY 600 (615)
T ss_pred HHHHHCCCcEEEeCCCC-------------Ccchhh--hhhcCCCeEEecccCCCCCCcCeEEEEECCCCCHHHHHHHHH
Confidence 3564 79999999621 111233 44899999999998765 6899999997 224444444566
Q ss_pred Hhcc
Q psy1969 81 ILGT 84 (256)
Q Consensus 81 ~~~~ 84 (256)
+||+
T Consensus 601 a~Eq 604 (615)
T PRK11910 601 AYEQ 604 (615)
T ss_pred HHHH
Confidence 6664
No 64
>PRK06565 amidase; Validated
Probab=76.15 E-value=4.7 Score=40.52 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=50.5
Q ss_pred CCCEEEecCCCCCccccCccccc---c---CCc--cc-chhhhccCCCeeeeecccc-CCCCchhhhhhh--hHHHHHHH
Q psy1969 10 TDGVLIYPTFPAQAQRHGEILLT---T---SGV--YY-AMLSNVIGFPSTNVPLGLG-SNGLPVGLQAGQ--QLASYITD 77 (256)
Q Consensus 10 ~~D~LL~Pt~p~~A~~~~~~~~~---~---~~~--~~-t~~~n~~GePaV~~pl~~g-~~~lp~gyQla~--~r~~l~~~ 77 (256)
+.|+||.|+.+.+++..+..... . .+. .+ ...++.+|.|.|.+|++.. ..++|.+++.+. ..+.-..+
T Consensus 466 ~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~ 545 (566)
T PRK06565 466 GLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLR 545 (566)
T ss_pred CCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHH
Confidence 48999999999998876542111 1 111 33 3445999999999999875 468999998872 23333445
Q ss_pred HHHHhcc
Q psy1969 78 GEEILGT 84 (256)
Q Consensus 78 ~~~~~~~ 84 (256)
++..||+
T Consensus 546 ~A~a~E~ 552 (566)
T PRK06565 546 FAAAFEA 552 (566)
T ss_pred HHHHHHH
Confidence 5666664
Done!