Query psy1969
Match_columns 256
No_of_seqs 299 out of 2563
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:52:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ppm_A Fatty-acid amide hydrol 99.8 2E-19 6.9E-24 176.0 9.7 130 66-245 440-572 (573)
2 1o9p_A Malonamidase E2; malona 99.7 2.2E-17 7.5E-22 155.8 7.4 114 48-241 298-412 (414)
3 3a2q_A 6-aminohexanoate-cyclic 99.7 2.1E-17 7.2E-22 159.0 6.6 88 54-141 348-453 (493)
4 3kfu_E Glutamyl-tRNA(Gln) amid 99.7 6E-17 2E-21 155.2 9.6 104 64-245 357-464 (471)
5 2dc0_A Probable amidase; struc 99.7 2.8E-17 9.6E-22 155.9 3.8 93 48-141 310-412 (434)
6 3a1k_A Amidase; AS family enzy 99.7 1.6E-16 5.5E-21 154.0 8.8 100 69-246 401-508 (521)
7 3h0l_A Glutamyl-tRNA(Gln) amid 99.6 2.5E-16 8.5E-21 151.1 8.5 72 69-141 373-448 (478)
8 3ip4_A Glutamyl-tRNA(Gln) amid 99.6 3.6E-16 1.2E-20 150.2 8.8 96 69-243 380-479 (485)
9 2gi3_A Glutamyl-tRNA(Gln) amid 99.6 3.7E-16 1.3E-20 149.7 8.2 72 69-141 366-440 (476)
10 1m22_A Peptide amidase, PAM; e 99.6 6.6E-16 2.3E-20 149.0 7.8 108 60-247 380-492 (503)
11 3kfu_E Glutamyl-tRNA(Gln) amid 98.0 1.6E-06 5.3E-11 82.9 3.0 79 5-84 373-456 (471)
12 3h0l_A Glutamyl-tRNA(Gln) amid 98.0 1.8E-06 6.2E-11 82.6 2.5 79 5-84 383-467 (478)
13 1o9p_A Malonamidase E2; malona 98.0 3E-06 1E-10 79.6 3.8 61 5-68 330-390 (414)
14 3a2q_A 6-aminohexanoate-cyclic 98.0 3.1E-06 1.1E-10 81.2 3.4 80 5-84 374-472 (493)
15 3ip4_A Glutamyl-tRNA(Gln) amid 98.0 3.1E-06 1.1E-10 81.0 3.3 79 5-84 390-474 (485)
16 2dc0_A Probable amidase; struc 97.9 3.4E-06 1.2E-10 79.7 2.8 79 5-84 342-431 (434)
17 2gi3_A Glutamyl-tRNA(Gln) amid 97.9 3.5E-06 1.2E-10 80.4 2.6 79 5-84 376-459 (476)
18 3a1k_A Amidase; AS family enzy 97.9 4E-06 1.4E-10 81.1 2.6 79 5-84 411-499 (521)
19 1m22_A Peptide amidase, PAM; e 97.2 0.00014 4.8E-09 69.8 3.0 76 5-83 402-481 (503)
20 3ppm_A Fatty-acid amide hydrol 96.8 0.00069 2.4E-08 66.2 3.8 46 10-56 460-505 (573)
No 1
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.78 E-value=2e-19 Score=175.97 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=90.0
Q ss_pred hhhhhHHHHHHHHHHHhc--cCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCCCCCceEEEEee
Q psy1969 66 QAGQQLASYITDGEEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCE 143 (256)
Q Consensus 66 Qla~~r~~l~~~~~~~~~--~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi~~ 143 (256)
+...++++++++|.+.|. ++|+||||+ +.+|++|+.......+..||.+||++|||+++||+|+++..... .
T Consensus 440 ~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~---~-- 513 (573)
T 3ppm_A 440 KLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDA---Q-- 513 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCHHHHH---H--
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccccchhhhhHhhCCCeEEEecccccccccc---c--
Confidence 334567788999999996 499999999 56899988643333457899999999999999999875321000 0
Q ss_pred ccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCccc-CCCeeeEeecCC
Q psy1969 144 TASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDY-WSPALHKVMAGP 222 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Pv~~Qvvg~~ 222 (256)
...|.. ...+.+.+..| .. ++.+ |+||||||||+|
T Consensus 514 ----------------------~~~~~~-------~~~~~~d~~~~-------------~~--~~~~~GlPVgVQiVGrr 549 (573)
T 3ppm_A 514 ----------------------MELYKG-------YFGDIWDIILK-------------KA--MKNSVGLPVAVQCVALP 549 (573)
T ss_dssp ----------------------HTTCCC-------SSCSHHHHHHH-------------HH--TCSCTTCEEEEEEECCT
T ss_pred ----------------------cccccc-------ccchhhhhhhh-------------hh--hhccCCCceEEEEeCCC
Confidence 001100 00001111111 11 3334 899999999999
Q ss_pred CchHHHHHHHHHHHHHhcCCCCC
Q psy1969 223 NQDRLCLAVAKKLEDIFYGWTMP 245 (256)
Q Consensus 223 ~~de~~L~~a~~ie~~~~~~~~~ 245 (256)
|+||+||++|++||+++++++.|
T Consensus 550 ~~EEklL~~a~~IE~~l~~~~~~ 572 (573)
T 3ppm_A 550 WQEELCLRFMREVEQLMTPQKQP 572 (573)
T ss_dssp TCHHHHHHHHHHHHHHHCTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999987655
No 2
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.69 E-value=2.2e-17 Score=155.83 Aligned_cols=114 Identities=26% Similarity=0.257 Sum_probs=91.9
Q ss_pred CeeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccccccccccchhhhhhCCceEEe
Q psy1969 48 PSTNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNV 126 (256)
Q Consensus 48 PaV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisV 126 (256)
|.+..++..+.......|..+ ..|+.+++++.++|+++|+||+|+++.+||+++... .....||.+||++|+|+++|
T Consensus 298 ~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~Paisv 375 (414)
T 1o9p_A 298 PMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNV 375 (414)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEE
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEe
Confidence 444444545554455556555 457778999999999999999999999999986521 12347999999999999999
Q ss_pred cCCCCCCCCceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccC
Q psy1969 127 PLGLGSNGLPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSH 206 (256)
Q Consensus 127 P~G~~~~glPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (256)
|+|+.. |+|+|+|+
T Consensus 376 P~g~~~-GlPvGvql----------------------------------------------------------------- 389 (414)
T 1o9p_A 376 PVLKVG-GLPIGVQV----------------------------------------------------------------- 389 (414)
T ss_dssp EEEEET-TEEEEEEE-----------------------------------------------------------------
T ss_pred eCCCCC-CCCeEEEE-----------------------------------------------------------------
Confidence 999876 88888777
Q ss_pred CcccCCCeeeEeecCCCchHHHHHHHHHHHHHhcC
Q psy1969 207 LVDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYG 241 (256)
Q Consensus 207 ~~~~~~Pv~~Qvvg~~~~de~~L~~a~~ie~~~~~ 241 (256)
||++++|++||++|+.+|+++++
T Consensus 390 ------------vg~~~~d~~lL~~a~~le~~~~g 412 (414)
T 1o9p_A 390 ------------IARFGNDAHALATAWFLEDALAK 412 (414)
T ss_dssp ------------EESTTCHHHHHHHHHHHHHHHHC
T ss_pred ------------ECCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999865
No 3
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=99.68 E-value=2.1e-17 Score=159.01 Aligned_cols=88 Identities=26% Similarity=0.439 Sum_probs=67.7
Q ss_pred ccccCCCCchhhhhh-hhHHHHHHHHHHHh-ccCCceeccCCCCCCccccccccc----------------ccccccchh
Q psy1969 54 LGLGSNGLPVGLQAG-QQLASYITDGEEIL-GTDGVLIYPTFPAQAQRHGEILLT----------------TSGVYYAML 115 (256)
Q Consensus 54 l~~g~~~lp~gyQla-~~r~~l~~~~~~~~-~~~D~Il~Pt~p~~Ap~~~~~~~~----------------~~~~~yT~~ 115 (256)
+..+.......|..+ ..|..+++++.++| +++|+||+|+++.+||+++..... .....||.+
T Consensus 348 ~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 427 (493)
T 3a2q_A 348 VKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVP 427 (493)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTH
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhccccc
Confidence 333433444555555 45777899999999 999999999999999999753210 012468999
Q ss_pred hhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 116 ANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 116 ~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
||++|+|+++||+|++.+|||+|+|+
T Consensus 428 ~nl~G~PaisvP~g~~~~GlPvGvQl 453 (493)
T 3a2q_A 428 FNVSGQPAISLPIGMSSDGMPIGVQI 453 (493)
T ss_dssp HHHHCCCEEEEEEEECTTSCEEEEEE
T ss_pred ccccCCCceeccCCcCCCCCCeEEEE
Confidence 99999999999999887888888888
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.68 E-value=6e-17 Score=155.22 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=86.3
Q ss_pred hhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc---cccccccchhhhhhCCceEEecCCCCCCCCceEE
Q psy1969 64 GLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL---TTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGL 139 (256)
Q Consensus 64 gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~---~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGl 139 (256)
.|..+ ..|..+++++.++|+++|+||+|+++.+||+++.... .+....||.+||++|+|+++||+|+ .+|+|+|+
T Consensus 357 ~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGl 435 (471)
T 3kfu_E 357 YYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGL 435 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEE
Confidence 34444 3466788999999999999999999999999975311 1122349999999999999999999 88999888
Q ss_pred EEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEee
Q psy1969 140 QVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVM 219 (256)
Q Consensus 140 Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvv 219 (256)
|+ |
T Consensus 436 Ql-----------------------------------------------------------------------------v 438 (471)
T 3kfu_E 436 QL-----------------------------------------------------------------------------L 438 (471)
T ss_dssp EE-----------------------------------------------------------------------------E
T ss_pred EE-----------------------------------------------------------------------------E
Confidence 88 9
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCC
Q psy1969 220 AGPNQDRLCLAVAKKLEDIFYGWTMP 245 (256)
Q Consensus 220 g~~~~de~~L~~a~~ie~~~~~~~~~ 245 (256)
|++++|++||++|+.+|++.++|...
T Consensus 439 g~~~~D~~LL~~A~~lE~~~g~w~~~ 464 (471)
T 3kfu_E 439 APWGEDERLLRAALAFEEATARAHLK 464 (471)
T ss_dssp CSTTCHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999999999998667653
No 5
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=99.65 E-value=2.8e-17 Score=155.95 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=69.2
Q ss_pred CeeeeeccccCCCCchhhhhh-hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc--------c-ccccccchhhh
Q psy1969 48 PSTNVPLGLGSNGLPVGLQAG-QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL--------T-TSGVYYAMLAN 117 (256)
Q Consensus 48 PaV~~pl~~g~~~lp~gyQla-~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~--------~-~~~~~yT~~~N 117 (256)
|.+..++..+.......|..+ ..|+.+++++.++|+++|+||+|+++.+||+++.... . .....||.+||
T Consensus 310 ~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~n 389 (434)
T 2dc0_A 310 PQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFS 389 (434)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhh
Confidence 344444444433344555555 4577789999999999999999999999999876311 0 11256899999
Q ss_pred hhCCceEEecCCCCCCCCceEEEE
Q psy1969 118 VIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 118 llG~PAisVP~G~~~~glPvGlQi 141 (256)
++|+|+++||+|+ .+|+|+|+|+
T Consensus 390 l~G~PaisvP~g~-~~GlPvGvql 412 (434)
T 2dc0_A 390 LLGVPTLALPFAK-VEGMPVGLQV 412 (434)
T ss_dssp HTTCCEEEEEEEE-ETTEEEEEEE
T ss_pred hhCCCeEEEecCC-CCCCCeEEEE
Confidence 9999999999998 7788888887
No 6
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=99.65 E-value=1.6e-16 Score=153.98 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc--------cccccccchhhhhhCCceEEecCCCCCCCCceEEE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL--------TTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQ 140 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~--------~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQ 140 (256)
..|+.+++++.++|+++|+||+||+|.+||+++.... ......||.+||++|+|+++||+|+ .+|||+|+|
T Consensus 401 ~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQ 479 (521)
T 3a1k_A 401 NLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMM 479 (521)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc-CCCCCeeEE
Confidence 3466788999999999999999999999999976310 0123568999999999999999998 678888888
Q ss_pred EeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeec
Q psy1969 141 VCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMA 220 (256)
Q Consensus 141 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg 220 (256)
+ ||
T Consensus 480 l-----------------------------------------------------------------------------vg 482 (521)
T 3a1k_A 480 I-----------------------------------------------------------------------------TG 482 (521)
T ss_dssp E-----------------------------------------------------------------------------EC
T ss_pred E-----------------------------------------------------------------------------Ec
Confidence 7 99
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCC
Q psy1969 221 GPNQDRLCLAVAKKLEDIFYGWTMPN 246 (256)
Q Consensus 221 ~~~~de~~L~~a~~ie~~~~~~~~~~ 246 (256)
++|+|++||++|+.+|++..+|..|.
T Consensus 483 ~~~~d~~LL~~A~~~E~~~~~~~~~~ 508 (521)
T 3a1k_A 483 RHFDDATVLRVGRAFEKLRGAFPTPA 508 (521)
T ss_dssp STTCHHHHHHHHHHHHHHHCCCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCcc
Confidence 99999999999999999666787643
No 7
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=99.64 E-value=2.5e-16 Score=151.15 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc----cccccccchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~----~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
..|..+++++.++|+++|+||+|+++.+||+++.... ......||.+||++|+|+++||+|+ .+|||+|+|+
T Consensus 373 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQl 448 (478)
T 3h0l_A 373 KVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQL 448 (478)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEE
Confidence 3466788999999999999999999999999976311 1112358999999999999999998 6788888888
No 8
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=99.63 E-value=3.6e-16 Score=150.21 Aligned_cols=96 Identities=25% Similarity=0.369 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccccc----cccccccchhhhhhCCceEEecCCCCCCCCceEEEEeec
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCET 144 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~~~----~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi~~~ 144 (256)
..|..+++++.++|+++|+||+|+++.+||+++.... .+....||.+||++|+|+++||+|++ +|||+|+|+
T Consensus 380 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlql--- 455 (485)
T 3ip4_A 380 KVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQF--- 455 (485)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEE---
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEE---
Confidence 3466788999999999999999999999999986311 11123589999999999999999986 788888877
Q ss_pred cccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCeeeEeecCCCc
Q psy1969 145 ASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAGPNQ 224 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~Qvvg~~~~ 224 (256)
||++++
T Consensus 456 --------------------------------------------------------------------------vg~~~~ 461 (485)
T 3ip4_A 456 --------------------------------------------------------------------------IGKPFD 461 (485)
T ss_dssp --------------------------------------------------------------------------ECSTTC
T ss_pred --------------------------------------------------------------------------EcCCCC
Confidence 999999
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q psy1969 225 DRLCLAVAKKLEDIFYGWT 243 (256)
Q Consensus 225 de~~L~~a~~ie~~~~~~~ 243 (256)
|++||++|+.+|+++. |.
T Consensus 462 d~~lL~~A~~lE~~~~-~~ 479 (485)
T 3ip4_A 462 EKTLYRVAYQYETQYN-LH 479 (485)
T ss_dssp HHHHHHHHHHHHHHSC-CT
T ss_pred HHHHHHHHHHHHHhcC-cc
Confidence 9999999999999985 53
No 9
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=99.63 E-value=3.7e-16 Score=149.74 Aligned_cols=72 Identities=33% Similarity=0.518 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHhccCCceeccCCCCCCcccccc---cccccccccchhhhhhCCceEEecCCCCCCCCceEEEE
Q psy1969 69 QQLASYITDGEEILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141 (256)
Q Consensus 69 ~~r~~l~~~~~~~~~~~D~Il~Pt~p~~Ap~~~~~---~~~~~~~~yT~~~NllG~PAisVP~G~~~~glPvGlQi 141 (256)
..|+.+++++.++|+++|+||+|+++.+||+++.. ........||.+||++|+|+++||+|++ +|||+|+|+
T Consensus 366 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvql 440 (476)
T 2gi3_A 366 KVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQV 440 (476)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeEEEE
Confidence 34667788899999999999999999999999751 1111234689999999999999999975 677777777
No 10
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=99.61 E-value=6.6e-16 Score=148.97 Aligned_cols=108 Identities=21% Similarity=0.129 Sum_probs=82.3
Q ss_pred CCchhhhhh-hhHHHHHHH--HHHHhcc--CCceeccCCCCCCcccccccccccccccchhhhhhCCceEEecCCCCCCC
Q psy1969 60 GLPVGLQAG-QQLASYITD--GEEILGT--DGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNG 134 (256)
Q Consensus 60 ~lp~gyQla-~~r~~l~~~--~~~~~~~--~D~Il~Pt~p~~Ap~~~~~~~~~~~~~yT~~~NllG~PAisVP~G~~~~g 134 (256)
.....|..+ ..+++++++ +.++|++ +|+||+|++ .++++++..... ....||.+||++|+|+++||+|+. +|
T Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~-~G 456 (503)
T 1m22_A 380 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD-FPGESYSAAAVAGYPSLTVPMGQI-DG 456 (503)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C-CTTCCHHHHHHHTCCEEEEEEEEE-TT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc-ccccccccchhhCCCeEEeccccC-CC
Confidence 344455554 445666555 9999985 999999999 567777532111 125689999999999999999976 67
Q ss_pred CceEEEEeeccccccccccccccccccCCCCCCcccCCCCCCCccccccchhhhhcchhhhhhhhhhhhccCCcccCCCe
Q psy1969 135 LPVGLQVCETASVAQSVTSFGVSTHSRLIPSTPQYLDNIDSPRRSTAVDYVWTQVKGFINIKLMFVVKITSHLVDYWSPA 214 (256)
Q Consensus 135 lPvGlQi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 214 (256)
||+|+|+
T Consensus 457 lPvGvql------------------------------------------------------------------------- 463 (503)
T 1m22_A 457 LPVGLLF------------------------------------------------------------------------- 463 (503)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred CCeEEEE-------------------------------------------------------------------------
Confidence 8877777
Q ss_pred eeEeecCCCchHHHHHHHHHHHHHhcCCCCCCC
Q psy1969 215 LHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNS 247 (256)
Q Consensus 215 ~~Qvvg~~~~de~~L~~a~~ie~~~~~~~~~~~ 247 (256)
||++++|++||++|+.+|+++..+.+|..
T Consensus 464 ----vg~~~~d~~lL~~A~~~E~~~~~~~~p~~ 492 (503)
T 1m22_A 464 ----MGTAWSEPKLIEMAYAYEQRTRARRPPHF 492 (503)
T ss_dssp ----ECSTTCHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ----ECCCCChHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999976555543
No 11
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=98.05 E-value=1.6e-06 Score=82.93 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=59.5
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc---cCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT---TSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGE 79 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~---~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~ 79 (256)
.++|+++|+||+||+|.+||++++.... .....||.++|++|.|.+++|++. ..++|.++|++ ...+....++.
T Consensus 373 ~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A 451 (471)
T 3kfu_E 373 QALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAA 451 (471)
T ss_dssp HHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHH
T ss_pred HHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999998753110 111138999999999999999988 77899999998 23444444455
Q ss_pred HHhcc
Q psy1969 80 EILGT 84 (256)
Q Consensus 80 ~~~~~ 84 (256)
+.+++
T Consensus 452 ~~lE~ 456 (471)
T 3kfu_E 452 LAFEE 456 (471)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 12
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=98.00 E-value=1.8e-06 Score=82.59 Aligned_cols=79 Identities=23% Similarity=0.309 Sum_probs=59.3
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc----ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDG 78 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~----~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~ 78 (256)
.++|+++|+||+||+|.+||++++... ......||.++|++|.|.+++|++. ..++|.++|++ ...+....++
T Consensus 383 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~ 461 (478)
T 3h0l_A 383 LKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDETTLLQI 461 (478)
T ss_dssp HHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHH
T ss_pred HHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHH
Confidence 468899999999999999999976321 0111148999999999999999987 66899999998 3344444455
Q ss_pred HHHhcc
Q psy1969 79 EEILGT 84 (256)
Q Consensus 79 ~~~~~~ 84 (256)
.+.+++
T Consensus 462 A~~lE~ 467 (478)
T 3h0l_A 462 SYLWEQ 467 (478)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 13
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=97.99 E-value=3e-06 Score=79.63 Aligned_cols=61 Identities=30% Similarity=0.363 Sum_probs=51.9
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG 68 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla 68 (256)
+++|+++|+||+||+|.+||++++.. .....||.++|++|.|.+++|++... ++|.++|++
T Consensus 330 ~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlv 390 (414)
T 1o9p_A 330 GEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVI 390 (414)
T ss_dssp HHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEE
T ss_pred HHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEE
Confidence 46889999999999999999986431 22346899999999999999998766 899999997
No 14
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=97.97 E-value=3.1e-06 Score=81.17 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=60.3
Q ss_pred Hhhh-cCCCEEEecCCCCCccccCccccc----------------cCCcccchhhhccCCCeeeeeccccCCCCchhhhh
Q psy1969 5 LEIL-GTDGVLIYPTFPAQAQRHGEILLT----------------TSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQA 67 (256)
Q Consensus 5 ~~~f-~~~D~LL~Pt~p~~A~~~~~~~~~----------------~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQl 67 (256)
.++| +++|+||+||+|.+||++++.... .....||.++|++|.|.+++|++....++|.++|+
T Consensus 374 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQl 453 (493)
T 3a2q_A 374 ERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQI 453 (493)
T ss_dssp HHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEE
T ss_pred HHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEE
Confidence 4678 999999999999999998754211 01126899999999999999998877789999999
Q ss_pred h--hhHHHHHHHHHHHhcc
Q psy1969 68 G--QQLASYITDGEEILGT 84 (256)
Q Consensus 68 a--~~r~~l~~~~~~~~~~ 84 (256)
+ ...+....++.+.+++
T Consensus 454 vg~~~~d~~lL~~A~~lE~ 472 (493)
T 3a2q_A 454 VAAYGREDLLLQVAAQLEG 472 (493)
T ss_dssp EESTTCHHHHHHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 8 2344444445555554
No 15
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=97.96 E-value=3.1e-06 Score=80.99 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=59.5
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc----ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDG 78 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~----~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~ 78 (256)
.++|+++|+||+||+|.+||++++... ......||.++|++|.|.+++|++.. .++|.++|++ ...+....++
T Consensus 390 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~ 468 (485)
T 3ip4_A 390 DKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRV 468 (485)
T ss_dssp HHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHH
T ss_pred HHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHH
Confidence 468999999999999999999875321 11112489999999999999999876 6899999998 3344444555
Q ss_pred HHHhcc
Q psy1969 79 EEILGT 84 (256)
Q Consensus 79 ~~~~~~ 84 (256)
...+++
T Consensus 469 A~~lE~ 474 (485)
T 3ip4_A 469 AYQYET 474 (485)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 16
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=97.92 E-value=3.4e-06 Score=79.73 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=59.5
Q ss_pred HhhhcCCCEEEecCCCCCccccCccccc--------cCC-cccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILLT--------TSG-VYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLAS 73 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~~--------~~~-~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~ 73 (256)
.++|+++|+||+||+|.+||++++.... ... ..||.++|++|.|.+++|++. ..++|.++|++ ...+.
T Consensus 342 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~~~~d~ 420 (434)
T 2dc0_A 342 VKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGAYGEDG 420 (434)
T ss_dssp HHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECCTTCHH
T ss_pred HHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECCCCchH
Confidence 4688999999999999999998754210 011 368999999999999999987 66899999998 33444
Q ss_pred HHHHHHHHhcc
Q psy1969 74 YITDGEEILGT 84 (256)
Q Consensus 74 l~~~~~~~~~~ 84 (256)
...++.+.+++
T Consensus 421 ~lL~~A~~lE~ 431 (434)
T 2dc0_A 421 KVLALGGWLEA 431 (434)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44555555553
No 17
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=97.90 E-value=3.5e-06 Score=80.41 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=58.9
Q ss_pred HhhhcCCCEEEecCCCCCccccCccc---cccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEIL---LTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGE 79 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~---~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~ 79 (256)
.++|+++|+||+||+|.+||++++.. .......||.++|++|.|.+++|++.. .++|.++|++ ...+....++.
T Consensus 376 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A 454 (476)
T 2gi3_A 376 NEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIA 454 (476)
T ss_dssp HHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHH
T ss_pred HHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeEEEEEcCCCCHHHHHHHH
Confidence 46788999999999999999987511 111123589999999999999999865 5799999998 33444445555
Q ss_pred HHhcc
Q psy1969 80 EILGT 84 (256)
Q Consensus 80 ~~~~~ 84 (256)
+.+++
T Consensus 455 ~~lE~ 459 (476)
T 2gi3_A 455 RAIEK 459 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 18
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=97.89 E-value=4e-06 Score=81.06 Aligned_cols=79 Identities=27% Similarity=0.296 Sum_probs=58.3
Q ss_pred HhhhcCCCEEEecCCCCCccccCcccc--------ccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHH
Q psy1969 5 LEILGTDGVLIYPTFPAQAQRHGEILL--------TTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASY 74 (256)
Q Consensus 5 ~~~f~~~D~LL~Pt~p~~A~~~~~~~~--------~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l 74 (256)
+++|++||+||+||+|.+||.+++... ......||.++|++|.|.+++|++. ..++|.++|++ ...+..
T Consensus 411 ~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~d~~ 489 (521)
T 3a1k_A 411 DTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDAT 489 (521)
T ss_dssp HHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHH
T ss_pred HHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc-CCCCCeeEEEEcCCCCHHH
Confidence 468899999999999999999875310 0112367999999999999999987 56899999998 223443
Q ss_pred HHHHHHHhcc
Q psy1969 75 ITDGEEILGT 84 (256)
Q Consensus 75 ~~~~~~~~~~ 84 (256)
..+++..+++
T Consensus 490 LL~~A~~~E~ 499 (521)
T 3a1k_A 490 VLRVGRAFEK 499 (521)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444455544
No 19
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=97.20 E-value=0.00014 Score=69.82 Aligned_cols=76 Identities=24% Similarity=0.152 Sum_probs=52.3
Q ss_pred HhhhcC--CCEEEecCCCCCccccCccccccCCcccchhhhccCCCeeeeeccccCCCCchhhhhh--hhHHHHHHHHHH
Q psy1969 5 LEILGT--DGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAG--QQLASYITDGEE 80 (256)
Q Consensus 5 ~~~f~~--~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GePaV~~pl~~g~~~lp~gyQla--~~r~~l~~~~~~ 80 (256)
.++|++ +|+||+||+ .++++++....... ..||.++|++|.|.+++|++.. .++|.++|++ ...+....++.+
T Consensus 402 ~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~~~-~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A~ 478 (503)
T 1m22_A 402 DAALAAHQLDALVAPTT-GVAWPIRSEGDDFP-GESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAWSEPKLIEMAY 478 (503)
T ss_dssp HHHHHHTTCSEEEEECC-CCCCBTTC---CCT-TCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHhhcCCCEEEeCCC-ccCcccccccCccc-ccccccchhhCCCeEEeccccC-CCCCeEEEEECCCCChHHHHHHHH
Confidence 456764 999999999 46777652211111 4589999999999999999865 5799999997 223444444444
Q ss_pred Hhc
Q psy1969 81 ILG 83 (256)
Q Consensus 81 ~~~ 83 (256)
.++
T Consensus 479 ~~E 481 (503)
T 1m22_A 479 AYE 481 (503)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 20
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=96.80 E-value=0.00069 Score=66.17 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=36.4
Q ss_pred CCCEEEecCCCCCccccCccccccCCcccchhhhccCCCeeeeeccc
Q psy1969 10 TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGL 56 (256)
Q Consensus 10 ~~D~LL~Pt~p~~A~~~~~~~~~~~~~~~t~~~n~~GePaV~~pl~~ 56 (256)
++|+||||+. .+|++|+..........||.++|++|.|++.+|.+.
T Consensus 460 ~lDaLL~Pt~-~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~ 505 (573)
T 3ppm_A 460 NLDVLLTPML-GPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTT 505 (573)
T ss_dssp TCSEEEEECC-CSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCEeeCCCC-CCCcCCccccccccccchhhhhHhhCCCeEEEeccc
Confidence 5999999994 588888754332334579999999999999999863
Done!