RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1969
(256 letters)
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 55.8 bits (135), Expect = 5e-09
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 87 VLIYPTFPAQAQRHGEILLTTSGVYYAM-------LANVIGFPSTNVPLGLGSNGLPVGL 139
VL+ PT P A R GE + + +Y + AN+ G P+ ++P G +GLPVGL
Sbjct: 359 VLLSPTTPTPAPRLGEAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFSEDGLPVGL 418
Query: 140 QV 141
Q+
Sbjct: 419 QI 420
Score = 53.1 bits (128), Expect = 4e-08
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 13 VLIYPTFPAQAQRHGEILLTTSGVYYAM-------LSNVIGFPSTNVPLGLGSNGLPVGL 65
VL+ PT P A R GE + + +Y + +N+ G P+ ++P G +GLPVGL
Sbjct: 359 VLLSPTTPTPAPRLGEAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFSEDGLPVGL 418
Query: 66 Q 66
Q
Sbjct: 419 Q 419
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 49.6 bits (119), Expect = 5e-07
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 79 EEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAM-------LANVIGFPSTNVPLGLG 131
+++ VL+ PT P A + GE AN+ G P+ +VP G
Sbjct: 377 DKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFT 436
Query: 132 SNGLPVGLQV 141
++GLPVGLQ+
Sbjct: 437 ADGLPVGLQL 446
Score = 47.7 bits (114), Expect = 2e-06
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 5 LEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLS-------NVIGFPSTNVPLGLG 57
++ VL+ PT P A + GE L N+ G P+ +VP G
Sbjct: 377 DKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFT 436
Query: 58 SNGLPVGLQ 66
++GLPVGLQ
Sbjct: 437 ADGLPVGLQ 445
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 43.1 bits (102), Expect = 7e-05
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 87 VLIYPTFPAQAQRHG------EILLTTSGVYYAM--------LANVIGFPSTNVPLGLGS 132
V++ P P A H E + GV Y LA + G P+T +P+GL +
Sbjct: 393 VVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPIGLSA 452
Query: 133 NGLPVGLQV 141
GLPVG+Q+
Sbjct: 453 TGLPVGVQI 461
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 13 VLIYPTFPAQAQRHG------EILLTTSGVYYAM--------LSNVIGFPSTNVPLGLGS 58
V++ P P A H E + GV Y L+ + G P+T +P+GL +
Sbjct: 393 VVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPATAIPIGLSA 452
Query: 59 NGLPVGLQA 67
GLPVG+Q
Sbjct: 453 TGLPVGVQI 461
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 42.7 bits (101), Expect = 1e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 87 VLIYPTFPAQAQRHGEILLTTSGVYYA----MLANVIGFPSTNVPLGLGSNGLPVGLQV 141
V++ PT P + GE L +Y + + AN+ G P+ +VP G+ GLP+GLQ+
Sbjct: 382 VIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQI 440
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 13 VLIYPTFPAQAQRHGEILLTTSGVYYA----MLSNVIGFPSTNVPLGLGSNGLPVGLQ 66
V++ PT P + GE L +Y + + +N+ G P+ +VP G+ GLP+GLQ
Sbjct: 382 VIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQ 439
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 40.5 bits (95), Expect = 5e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 112 YAMLANVIGFPSTNVPLGLGSNGLPVGLQ 140
Y NV+G+PS NVP G S+GLP+G Q
Sbjct: 418 YTWPWNVLGWPSINVPAGFTSDGLPIGAQ 446
Score = 40.5 bits (95), Expect = 6e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 38 YAMLSNVIGFPSTNVPLGLGSNGLPVGLQ 66
Y NV+G+PS NVP G S+GLP+G Q
Sbjct: 418 YTWPWNVLGWPSINVPAGFTSDGLPIGAQ 446
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 40.5 bits (96), Expect = 6e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 116 ANVIGFPSTNVPLGLGSNGLPVGLQV 141
AN+ G P+ +VP G GLPVGLQ+
Sbjct: 416 ANLAGLPAISVPAGFDDGGLPVGLQL 441
Score = 38.2 bits (90), Expect = 0.003
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 43 NVIGFPSTNVPLGLGSNGLPVGLQ 66
N+ G P+ +VP G GLPVGLQ
Sbjct: 417 NLAGLPAISVPAGFDDGGLPVGLQ 440
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 37.3 bits (87), Expect = 0.007
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 87 VLIYPTFPAQAQRHGE---ILLTTSGVYYAMLAN-----VIGFPSTNVPLGLGSNGLPVG 138
+L+ PT P A M+AN V G P+ +VP GL +GLPVG
Sbjct: 419 LLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGL-VDGLPVG 477
Query: 139 LQV 141
L +
Sbjct: 478 LML 480
Score = 35.4 bits (82), Expect = 0.022
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 13 VLIYPTFPAQAQRHGE---ILLTTSGVYYAMLSN-----VIGFPSTNVPLGLGSNGLPVG 64
+L+ PT P A M++N V G P+ +VP GL +GLPVG
Sbjct: 419 LLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGL-VDGLPVG 477
Query: 65 LQ 66
L
Sbjct: 478 LM 479
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 35.7 bits (83), Expect = 0.018
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 116 ANVIGFPSTNVPLGLGSNGLPVGLQ 140
A+ G P ++P GL +GLPVGL+
Sbjct: 419 ASNAGLPGLSLPAGLTPHGLPVGLE 443
Score = 35.7 bits (83), Expect = 0.019
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 45 IGFPSTNVPLGLGSNGLPVGLQ 66
G P ++P GL +GLPVGL+
Sbjct: 422 AGLPGLSLPAGLTPHGLPVGLE 443
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 35.0 bits (81), Expect = 0.028
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 116 ANVIGFPSTNVPLGLGSNGLPVGLQV 141
A + G P+ +VP+G + GLP+G+Q+
Sbjct: 425 ATLAGLPAISVPVGFNAAGLPMGMQI 450
Score = 33.8 bits (78), Expect = 0.081
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 45 IGFPSTNVPLGLGSNGLPVGLQ 66
G P+ +VP+G + GLP+G+Q
Sbjct: 428 AGLPAISVPVGFNAAGLPMGMQ 449
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 34.6 bits (80), Expect = 0.037
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 79 EEILGTDGVLIYPTFPAQAQRHGEILLTTSGV-YYAM----LANVIGFPSTNVPLGLGSN 133
+LG D VL+ PT P A G A+ +A + G P ++PL +
Sbjct: 307 AALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLA-SVD 365
Query: 134 GLPVGL 139
G P GL
Sbjct: 366 GAPFGL 371
Score = 32.6 bits (75), Expect = 0.18
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 6 EILGTDGVLIYPTFPAQAQRHGEILLTTSGV-YYAM----LSNVIGFPSTNVPLGLGSNG 60
+LG D VL+ PT P A G A+ ++ + G P ++PL +G
Sbjct: 308 ALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLA-SVDG 366
Query: 61 LPVGL 65
P GL
Sbjct: 367 APFGL 371
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 34.5 bits (79), Expect = 0.046
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 64 GLQAGQ-QLASYITDGEEILGTDGVLIYPTFPAQAQRHGE---------ILLTTSGVYYA 113
L+A + L++ I + I V++ P R G +LL V Y
Sbjct: 347 ALRAAEVVLSARI---QSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYF 403
Query: 114 MLANVIGFPSTNVPLGLGSNGLPVGLQV 141
+ N+ G P+ VP +GLP+ +Q+
Sbjct: 404 QVWNLTGQPAAVVPWDFDGDGLPMSVQL 431
Score = 34.1 bits (78), Expect = 0.063
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 4 DLEILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLSNVIGFPSTNVPLGLGSNG 60
D++++ T G P+ QR G + LL V Y + N+ G P+ VP +G
Sbjct: 365 DVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDG 424
Query: 61 LPVGLQ 66
LP+ +Q
Sbjct: 425 LPMSVQ 430
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 33.7 bits (77), Expect = 0.082
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 114 MLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVT----SFGVSTHSRLIPS 165
+L+ V G+P VP G +NG PVG + + ++ + +R P
Sbjct: 480 LLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNIGYAYEQQSKNRKPPK 535
Score = 32.2 bits (73), Expect = 0.25
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 40 MLSNVIGFPSTNVPLGLGSNGLPVGL 65
+LS V G+P VP G +NG PVG
Sbjct: 480 LLSAVAGYPELAVPAGYDNNGEPVGA 505
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 33.0 bits (76), Expect = 0.12
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 115 LANVIGFPSTNVPLGLGSNGLPVGLQ 140
L N G P+ ++PLG S+GLPVG+
Sbjct: 415 LQNATGEPAISLPLGQSSDGLPVGMM 440
Score = 33.0 bits (76), Expect = 0.15
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 41 LSNVIGFPSTNVPLGLGSNGLPVGLQ 66
L N G P+ ++PLG S+GLPVG+
Sbjct: 415 LQNATGEPAISLPLGQSSDGLPVGMM 440
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 32.2 bits (74), Expect = 0.22
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 87 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANV---------IGFPSTNVPLGLGSNGLPV 137
VLI P P A G+ + GV + AN+ IG P VPL GLP+
Sbjct: 372 VLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRT-PGGLPI 430
Query: 138 GLQV 141
G+Q+
Sbjct: 431 GVQL 434
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 32.3 bits (74), Expect = 0.24
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 117 NVIGFPSTNVPLGLGSNGLPVGLQV 141
N+ P+ +VP G + GLPVGLQ+
Sbjct: 411 NLTQQPAASVPCGFTAAGLPVGLQI 435
Score = 30.8 bits (70), Expect = 0.68
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 43 NVIGFPSTNVPLGLGSNGLPVGLQ 66
N+ P+ +VP G + GLPVGLQ
Sbjct: 411 NLTQQPAASVPCGFTAAGLPVGLQ 434
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 31.1 bits (71), Expect = 0.63
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 91 PTFPAQAQRHGEI----LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141
FP R G + A+ +G P +VP GL G+PVG+Q+
Sbjct: 385 LPFPDDLDRQGAEGFRRVWEAQLPQIAL--PFMGLPGLSVPTGL-VGGVPVGVQL 436
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 17 PTFPAQAQRHGEI----LLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQ 66
FP R G + A+ +G P +VP GL G+PVG+Q
Sbjct: 385 LPFPDDLDRQGAEGFRRVWEAQLPQIAL--PFMGLPGLSVPTGL-VGGVPVGVQ 435
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 30.8 bits (70), Expect = 0.73
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 114 MLANVIGFPSTNVPLGLGSNGLPVGLQVCETA 145
M N + ++P G G+ G+PVGL + A
Sbjct: 401 MPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPA 432
Score = 30.0 bits (68), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 40 MLSNVIGFPSTNVPLGLGSNGLPVGLQ 66
M N + ++P G G+ G+PVGL
Sbjct: 401 MPGNFLDMCGVSLPCGTGAAGMPVGLL 427
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 30.6 bits (69), Expect = 0.80
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 112 YAMLANVIGFPSTNVPLGLGSNGLPVGLQ 140
Y LAN+ G P+ ++P GLP+G+Q
Sbjct: 428 YTALANLTGQPAISLPTYETKEGLPMGVQ 456
Score = 29.0 bits (65), Expect = 2.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 38 YAMLSNVIGFPSTNVPLGLGSNGLPVGLQ 66
Y L+N+ G P+ ++P GLP+G+Q
Sbjct: 428 YTALANLTGQPAISLPTYETKEGLPMGVQ 456
>gnl|CDD|233907 TIGR02517, type_II_gspD, type II secretion system protein D. In
Gram-negative bacteria, proteins that have first crossed
the inner member by Sec-dependent protein transport can
be exported across the outer membrane by type II
secretion, also called the main terminal branch of the
general secretion pathway. Members of this family are
general secretion pathway protein D. In Yersinia
enterocolitica, a second member of this family is part
of a novel second type II secretion system specifically
associated with virulence (See PMID:12654803). This
family is closely homologous to the type IV pilus outer
membrane secretin PilQ (TIGR02515) and to the type III
secretion system pore YscC/HrcC (TIGR02516) [Protein
fate, Protein and peptide secretion and trafficking].
Length = 594
Score = 30.4 bits (69), Expect = 0.94
Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 16/148 (10%)
Query: 38 YAMLSNVIGFPSTNVPLGLGSNGLPVGLQAGQQLASYITDGEEILGTDGVLIYPTFPAQA 97
LS + N+ + GS P L+ ++L S + V +Y A A
Sbjct: 192 GGKLSVIAPDRRNNILIRAGS---PEALERIKKLISQLDVPAS--EGGNVRVYYLRNADA 246
Query: 98 QRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVTSFGVS 157
E+ T GV+ N G S+ G + G Q +AS S +
Sbjct: 247 ---EELAKTLQGVF-GGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGGSVSGSADKA 302
Query: 158 THSRLIPSTPQYLDNI-------DSPRR 178
T+S +I ++PQ NI D R
Sbjct: 303 TNSLIITASPQDYKNIRAVIKQLDVRRA 330
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 30.5 bits (69), Expect = 1.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 115 LANVIGFPSTNVPLGLGSNGLPVGL 139
A V G+P VP+G GLPVGL
Sbjct: 437 PAAVAGYPHLTVPMGQ-VQGLPVGL 460
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 44 VIGFPSTNVPLGLGSNGLPVGL 65
V G+P VP+G GLPVGL
Sbjct: 440 VAGYPHLTVPMGQ-VQGLPVGL 460
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 29.8 bits (67), Expect = 1.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 120 GFPSTNVPLGLGSNGLPVGLQVCETA----SVAQSVTSFGVSTHSRLIPS 165
G+PS +P G G P G+ + TA ++ + +F +T R IP
Sbjct: 440 GYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAYAFEQATKHRKIPG 489
Score = 27.9 bits (62), Expect = 5.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 46 GFPSTNVPLGLGSNGLPVGL 65
G+PS +P G G P G+
Sbjct: 440 GYPSIAIPAGYMEGGRPFGI 459
>gnl|CDD|233568 TIGR01774, PFL2-3, glycyl radical enzyme, PFL2/glycerol dehydratase
family. This family previously was designated pyruvate
formate-lyase, but it now appears that members include
the B12-independent glycerol dehydratase. Therefore, the
functional definition of the family is being broadened.
This family includes the PflF and PflD proteins of E.
coli, described as isoforms of pyruvate-formate lyase
found in a limited number additional species. PFL
catalyzes the reaction pyruvate + CoA -> acetyl-CoA +
formate, which is a step in the fermentation of glucose.
Length = 786
Score = 29.5 bits (66), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 35 GVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQAGQQLA 72
G + A + S NVP G ++ P G +AG+ LA
Sbjct: 631 GKFAAGCYPM----SANVPFGFFTSATPDGRKAGEPLA 664
>gnl|CDD|223351 COG0274, DeoC, Deoxyribose-phosphate aldolase [Nucleotide transport
and metabolism].
Length = 228
Score = 28.7 bits (65), Expect = 2.6
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 82 LGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPL 128
G V + P++ A+ E L ++ V + VIGFP
Sbjct: 36 YGFAAVCVNPSYVPLAK---EALKGSTVV---RVCTVIGFPLGANTT 76
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 28.8 bits (64), Expect = 3.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 183 DYVWTQVKGFINIKLMFVVKITSHLVDYWSPALHKVMAG---PNQDRLCLAV 231
D W + F N + +TS +V++W +H++ G P Q R LA+
Sbjct: 164 DNPWNTDRCFSNYSMANTTNMTSAVVEFWERNMHQMTDGLEKPGQIRWPLAI 215
>gnl|CDD|235484 PRK05469, PRK05469, peptidase T; Provisional.
Length = 408
Score = 28.2 bits (64), Expect = 4.8
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 28 EILLTTSGVYYAML-SN------VIGFPS---TNVPLGLGSNGLPVGLQAGQQLASYITD 77
++ L +G A L +N IGF + T P G N P Q + +Y D
Sbjct: 49 DVTLDENGYVMATLPANVDKDVPTIGFIAHMDT-APDFSGKNVKP------QIIENY--D 99
Query: 78 GEEI-LGTDGVLIYPT-FPAQAQRHGEILLTTSG 109
G +I LG ++ P FP G+ L+TT G
Sbjct: 100 GGDIALGDGNEVLSPAEFPELKNYIGQTLITTDG 133
>gnl|CDD|224823 COG1911, RPL30, Ribosomal protein L30E [Translation, ribosomal
structure and biogenesis].
Length = 100
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 37 YYAMLSN--VIGFPSTNVPLG 55
YYA LS+ V + T+V LG
Sbjct: 55 YYAKLSDIPVYVYEGTSVELG 75
Score = 26.1 bits (58), Expect = 7.7
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 111 YYAMLAN--VIGFPSTNVPLG 129
YYA L++ V + T+V LG
Sbjct: 55 YYAKLSDIPVYVYEGTSVELG 75
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 27.3 bits (61), Expect = 9.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 79 EEILGTDGVLIYPTFPAQAQRHGEILLTTSGV--YYAMLANVIGFPSTNVPLGLGSNGLP 136
E I ++IYP + A E + Y ++N++G PS ++PLG N LP
Sbjct: 349 ESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLP 407
Query: 137 VGLQV 141
L +
Sbjct: 408 FNLAI 412
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,143,710
Number of extensions: 1244376
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 55
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)