RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1969
(256 letters)
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 52.9 bits (126), Expect = 1e-08
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 79 EEILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGL 135
E+L ++ PT P A + GEI L + + AN+ G P+ +VP G SN L
Sbjct: 375 NEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNL 433
Query: 136 PVGLQV 141
PVG+QV
Sbjct: 434 PVGVQV 439
Score = 50.6 bits (120), Expect = 7e-08
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 6 EILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLP 62
E+L ++ PT P A + GEI L + + +N+ G P+ +VP G SN LP
Sbjct: 376 EVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLP 434
Query: 63 VGLQ 66
VG+Q
Sbjct: 435 VGVQ 438
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 52.4 bits (124), Expect = 1e-08
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 79 EEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVG 138
E+ VL+ + P A L +T Y L ++G P NVP+ GLP+G
Sbjct: 330 GEVFEGVDVLLTYSAPGTAPAKA--LASTGDPRYNRLWTLMGNPCVNVPVL-KVGGLPIG 386
Query: 139 LQV 141
+QV
Sbjct: 387 VQV 389
Score = 50.1 bits (118), Expect = 9e-08
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 6 EILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGL 65
E+ VL+ + P A L +T Y L ++G P NVP+ GLP+G+
Sbjct: 331 EVFEGVDVLLTYSAPGTAPAKA--LASTGDPRYNRLWTLMGNPCVNVPVL-KVGGLPIGV 387
Query: 66 Q 66
Q
Sbjct: 388 Q 388
Score = 28.2 bits (61), Expect = 1.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 218 VMAGPNQDRLCLAVAKKLEDIF 239
V+A D LA A LED
Sbjct: 389 VIARFGNDAHALATAWFLEDAL 410
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 52.1 bits (124), Expect = 2e-08
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 79 EEILGTDGVLIYPTFPAQAQRHGEILLTTSGVY----YAMLANVIGFPSTNVPLGLGSNG 134
+++ V++ PT P A GE + +Y N+ G P +VP G SNG
Sbjct: 390 DKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNG 448
Query: 135 LPVGLQV 141
P+GLQ
Sbjct: 449 RPIGLQF 455
Score = 49.4 bits (117), Expect = 1e-07
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 6 EILGTDGVLIYPTFPAQAQRHGEILLTTSGVY----YAMLSNVIGFPSTNVPLGLGSNGL 61
++ V++ PT P A GE + +Y N+ G P +VP G SNG
Sbjct: 391 KVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGR 449
Query: 62 PVGLQ 66
P+GLQ
Sbjct: 450 PIGLQ 454
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 48.2 bits (113), Expect = 4e-07
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 87 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 141
L+ PT E A V G+PS VP+G +GLPVGL
Sbjct: 408 ALVAPTTGVAWPIRSEG--DDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLF 459
Score = 45.9 bits (107), Expect = 2e-06
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 13 VLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVGLQ 66
L+ PT E + V G+PS VP+G +GLPVGL
Sbjct: 408 ALVAPTTGVAWPIRSEG--DDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLL 458
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 45.5 bits (106), Expect = 3e-06
Identities = 19/108 (17%), Positives = 29/108 (26%), Gaps = 32/108 (29%)
Query: 65 LQAGQQLASYITDGEEILGTDG--VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFP 122
+ ++ Y VL+ P A T + Y +L N + FP
Sbjct: 409 WKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATGAISYTVLYNCLDFP 467
Query: 123 STNVPLGL-----------------------------GSNGLPVGLQV 141
+ VP+ S GLPV +Q
Sbjct: 468 AGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQC 515
Score = 42.4 bits (98), Expect = 3e-05
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 30/83 (36%)
Query: 13 VLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGL---------------- 56
VL+ P A T + Y +L N + FP+ VP+
Sbjct: 433 VLLTPMLG-PALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYF 491
Query: 57 -------------GSNGLPVGLQ 66
S GLPV +Q
Sbjct: 492 GDIWDIILKKAMKNSVGLPVAVQ 514
>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga
maritima [TaxId: 2336]}
Length = 285
Score = 26.1 bits (57), Expect = 4.0
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 11/59 (18%)
Query: 205 SHLVDYWSPALHKVMAGPNQDRLCLAVAKKLE-------DIFYGWTMPNSTGMLVEYRD 256
++ V YW +++ L + + + D F W R
Sbjct: 97 NYFVKYWYNEWKEIV----FSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARK 151
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 25.1 bits (54), Expect = 9.7
Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 11/161 (6%)
Query: 5 LEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLSNVIGFPSTNVPLGLGSNGLPVG 64
+ I G+DGV ++ ++ V + N
Sbjct: 36 VIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKN--ADW 93
Query: 65 LQAGQQLASYITDG----EEILGTDGVLIYPTFPAQAQRHGEILLTTS---GVYYAMLAN 117
+ Q A EEI+ + P +A E + V YA ++
Sbjct: 94 IVGMHQKAMKEYGELMSMEEIVAEGYCIANPD--CKAAALTEADADLNMDDIVAYARVSE 151
Query: 118 VIGFPSTNVPLGLGSNGLPVGLQVCETASVAQSVTSFGVST 158
++ P + + + + G+
Sbjct: 152 LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKD 192
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 927,879
Number of extensions: 40716
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 15
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)