BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1970
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 52 VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLEK 111
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 112 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 148
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 92 VLERDGERVLERDGERVLEKDGERVLERDGERVLERDGERVLERDGERVLERDGERVLER 151
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 152 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 188
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 220 VLERDGERVLERDGERVLEKDGERVLERDGERVLERDGERVLERDGERVLERDGERVLER 279
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 280 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 316
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 12 VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLER 71
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 72 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 108
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 132 VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLER 191
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 192 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 228
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 260 VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLER 319
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 320 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 356
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 84 VLERDGERVLERDGERVLERDGERVLEKDGERVLERDGERVLERDGERVLERDGERVLER 143
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 144 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 180
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 212 VLERDGERVLERDGERVLERDGERVLEKDGERVLERDGERVLERDGERVLERDGERVLER 271
L D E G R+L + D ER+ G RV+ER G + E +
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYG--MTETLMNTSVRA 317
Query: 272 DGERVLERDGERVLERDGE--RVLERDGERVLERDGERV 308
DGE R G + G R++E DG + DGE V
Sbjct: 318 DGE---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 172 VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDG------ERVLERDG 225
L D E G R+L + D ER+ G RV+ER G + DG
Sbjct: 260 TLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG 319
Query: 226 ERVLERDGERVLEKDGE--RVLERDGERVLERDGERV 260
E R G + G R++E DG + DGE V
Sbjct: 320 E---PRAGTVGVPLPGVELRLVEEDGTPIAALDGESV 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.141 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,182,848
Number of Sequences: 62578
Number of extensions: 827504
Number of successful extensions: 2278
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2014
Number of HSP's gapped (non-prelim): 76
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)