Query psy1970
Match_columns 479
No_of_seqs 7 out of 9
Neff 1.3
Searched_HMMs 46136
Date Fri Aug 16 20:55:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2093 DNA-directed RNA polym 82.6 0.58 1.3E-05 38.0 0.9 16 456-471 23-38 (64)
2 PF08706 D5_N: D5 N terminal l 54.9 4.3 9.3E-05 32.0 0.1 48 415-470 98-145 (150)
3 PRK00454 engB GTP-binding prot 52.9 7.8 0.00017 31.7 1.4 20 412-431 16-35 (196)
4 PRK08351 DNA-directed RNA poly 48.3 9.1 0.0002 30.5 1.0 12 460-471 24-35 (61)
5 COG3545 Predicted esterase of 42.5 4.5 9.8E-05 37.9 -1.7 47 426-476 105-153 (181)
6 PF11766 Candida_ALS_N: Cell-w 42.2 7.3 0.00016 37.5 -0.4 45 417-464 152-199 (249)
7 KOG4466|consensus 42.1 14 0.0003 37.0 1.5 67 390-458 215-290 (291)
8 KOG0096|consensus 38.0 28 0.0006 33.8 2.7 55 423-477 13-70 (216)
9 KOG0568|consensus 37.7 12 0.00026 37.6 0.2 36 433-468 224-260 (342)
10 PF00220 Hormone_4: Neurohypop 35.9 16 0.00035 20.6 0.5 7 417-423 3-9 (9)
11 COG0777 AccD Acetyl-CoA carbox 35.0 17 0.00037 36.4 0.9 15 452-478 198-212 (294)
12 PF08816 Ivy: Inhibitor of ver 34.7 21 0.00046 31.0 1.3 48 416-469 52-100 (118)
13 cd01849 YlqF_related_GTPase Yl 28.9 45 0.00097 27.4 2.2 15 462-476 141-155 (155)
14 PF08956 DUF1869: Domain of un 28.4 32 0.0007 27.9 1.3 28 418-445 11-38 (60)
15 cd02414 jag_KH jag_K homology 28.3 33 0.00071 26.5 1.3 40 422-476 35-74 (77)
16 PRK09510 tolA cell envelope in 24.5 31 0.00067 35.3 0.7 51 418-472 333-383 (387)
17 PF00800 PDT: Prephenate dehyd 23.4 36 0.00077 29.8 0.8 33 439-471 143-176 (181)
18 PRK06393 rpoE DNA-directed RNA 23.2 44 0.00096 27.1 1.2 13 459-471 25-37 (64)
19 cd02424 Peptidase_C39E A sub-f 23.2 23 0.00051 28.2 -0.4 15 457-471 113-127 (129)
20 KOG1098|consensus 20.5 51 0.0011 36.7 1.3 51 417-467 63-127 (780)
No 1
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=82.62 E-value=0.58 Score=38.02 Aligned_cols=16 Identities=31% Similarity=0.812 Sum_probs=14.0
Q ss_pred eecCcccccccceeee
Q psy1970 456 IRHPTDFATNWTGMLV 471 (479)
Q Consensus 456 irhptdfatnwtgmlv 471 (479)
+-|.++|.+||.||||
T Consensus 23 ~Cgs~~~te~W~G~~i 38 (64)
T COG2093 23 VCGSTDLTEEWFGLLI 38 (64)
T ss_pred CCCCcccchhhccEEE
Confidence 4577899999999997
No 2
>PF08706 D5_N: D5 N terminal like; InterPro: IPR014818 This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primase.
Probab=54.91 E-value=4.3 Score=32.03 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=29.7
Q ss_pred cccccCCCceeeeecCCCCCCcchhhhhhcccccccccceeeecCcccccccceee
Q psy1970 415 KEERNCPNGVLIGKIGPESNKPIDSAVMASQTDRQTHKLNVIRHPTDFATNWTGML 470 (479)
Q Consensus 415 keerncpngvligkigpesnkpidsavmasqtdrqthklnvirhptdfatnwtgml 470 (479)
..--||+||||-=+- ..-.| .+..+..|++++|--.|..-+..|..+|
T Consensus 98 ~~~i~~~NGvldl~t--g~l~~------h~p~~~~t~~~~~~y~p~a~~p~~~~fL 145 (150)
T PF08706_consen 98 PNLINFKNGVLDLRT--GELRP------HDPEDYITKKIPVDYDPNADCPRFDKFL 145 (150)
T ss_pred cCEEecCCEEEECCC--CeecC------CCHHHeEeeecccccCCCCCChHHHHHH
Confidence 456799999984222 11122 3445667788888888875444566554
No 3
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=52.93 E-value=7.8 Score=31.65 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=14.2
Q ss_pred CCCcccccCCCceeeeecCC
Q psy1970 412 VDGKEERNCPNGVLIGKIGP 431 (479)
Q Consensus 412 vdgkeerncpngvligkigp 431 (479)
+.+.-..++|+=+|||.-|.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~ 35 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNV 35 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCC
Confidence 55566668888888887664
No 4
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=48.30 E-value=9.1 Score=30.52 Aligned_cols=12 Identities=17% Similarity=0.786 Sum_probs=10.4
Q ss_pred cccccccceeee
Q psy1970 460 TDFATNWTGMLV 471 (479)
Q Consensus 460 tdfatnwtgmlv 471 (479)
++|.++|.||+|
T Consensus 24 ~~~T~~W~G~vi 35 (61)
T PRK08351 24 RDLSDEWFDLVI 35 (61)
T ss_pred CccccccccEEE
Confidence 459999999987
No 5
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=42.48 E-value=4.5 Score=37.90 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=35.9
Q ss_pred eeecCCCCC--CcchhhhhhcccccccccceeeecCcccccccceeeeecCCc
Q psy1970 426 IGKIGPESN--KPIDSAVMASQTDRQTHKLNVIRHPTDFATNWTGMLVDTGGV 476 (479)
Q Consensus 426 igkigpesn--kpidsavmasqtdrqthklnvirhptdfatnwtgmlvdtggv 476 (479)
++.|+|-+- +|.-|.|+||..|. .--+-|-++||+.|-+.||++|-.
T Consensus 105 ~~tf~~~p~~~lpfps~vvaSrnDp----~~~~~~a~~~a~~wgs~lv~~g~~ 153 (181)
T COG3545 105 LMTFDPIPREPLPFPSVVVASRNDP----YVSYEHAEDLANAWGSALVDVGEG 153 (181)
T ss_pred ccccCCCccccCCCceeEEEecCCC----CCCHHHHHHHHHhccHhheecccc
Confidence 455666554 56778999998774 445778899999999999999843
No 6
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=42.19 E-value=7.3 Score=37.48 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=25.4
Q ss_pred cccCCCceeeeecCCCCCCc---chhhhhhcccccccccceeeecCccccc
Q psy1970 417 ERNCPNGVLIGKIGPESNKP---IDSAVMASQTDRQTHKLNVIRHPTDFAT 464 (479)
Q Consensus 417 erncpngvligkigpesnkp---idsavmasqtdrqthklnvirhptdfat 464 (479)
-.+||||.+.|.||-..+.. ||-. +..-..|.+||-.-.|+.+.+
T Consensus 152 ~~~Cp~Gy~sG~ig~~~~~~~~~iDCs---s~~v~isn~~NdW~~P~s~~~ 199 (249)
T PF11766_consen 152 GGNCPNGYTSGTIGFSISNGGFTIDCS---SIHVGISNSFNDWNFPESAES 199 (249)
T ss_dssp ----TT-EEEEEEEEEEESS-EEEEEE---EEEEEEESSB-TTS-BS--B-
T ss_pred cCCCCCCcEeeeEEEEecCCceeEecc---ceeehhhcccccccCcccccc
Confidence 36899999999999776554 7743 223346788999999987765
No 7
>KOG4466|consensus
Probab=42.05 E-value=14 Score=37.01 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=46.8
Q ss_pred CCCccCCCC------cccccCCCCCCCCCCCcccccCCCceeeeecCCCC---CCcchhhhhhcccccccccceeeec
Q psy1970 390 NSSDYREGP------LTRRHGIEGKDNSVDGKEERNCPNGVLIGKIGPES---NKPIDSAVMASQTDRQTHKLNVIRH 458 (479)
Q Consensus 390 nssdyregp------ltrrhgiegkdnsvdgkeerncpngvligkigpes---nkpidsavmasqtdrqthklnvirh 458 (479)
|+|+|-.+| +..+.++-|..+.++||+ +||.+..|..||.+. .+|-+|.+|--+...+..+.-+|.|
T Consensus 215 ~~~~f~~rieeg~l~y~~~w~~k~q~~~~ngke--~~~~aa~its~~~~~vw~k~~~~s~~edI~l~~l~~gk~~ik~ 290 (291)
T KOG4466|consen 215 NDSDFSARIEEGKLLYDFRWYEKGQAIYANGKE--KKPRAAVITSIGTEEVWVKRTSDSTTEDIYLSQLLKGKPSIKR 290 (291)
T ss_pred ccchhhcccccchhhhhhHHhhhcccccccccc--cCcccceeeecCCccceeecCCCcchhhhhHHHHHcCCCCcCC
Confidence 455555443 346788889999999998 589999999998653 4566777775555555555556654
No 8
>KOG0096|consensus
Probab=38.00 E-value=28 Score=33.79 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=36.4
Q ss_pred ceeeeecCCCCCCcchhhhhhcccccccccceeeecCccccccccee---eeecCCcc
Q psy1970 423 GVLIGKIGPESNKPIDSAVMASQTDRQTHKLNVIRHPTDFATNWTGM---LVDTGGVS 477 (479)
Q Consensus 423 gvligkigpesnkpidsavmasqtdrqthklnvirhptdfatnwtgm---lvdtggvs 477 (479)
-||||+-||-.-.-+-+-..++-.-.-.-.|.|-.||+.|-||-.-+ ..||-|.+
T Consensus 13 lvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqE 70 (216)
T KOG0096|consen 13 LVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQE 70 (216)
T ss_pred EEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccce
Confidence 37889988876665555555544333344577889999999997533 34666553
No 9
>KOG0568|consensus
Probab=37.71 E-value=12 Score=37.57 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=29.7
Q ss_pred CCCcchhh-hhhcccccccccceeeecCcccccccce
Q psy1970 433 SNKPIDSA-VMASQTDRQTHKLNVIRHPTDFATNWTG 468 (479)
Q Consensus 433 snkpidsa-vmasqtdrqthklnvirhptdfatnwtg 468 (479)
+.||+.+| .-.+-.|-.|||||-|---.-|...|.-
T Consensus 224 kgkplkk~qsd~~yid~~th~lnkilidngfqpewi~ 260 (342)
T KOG0568|consen 224 KGKPLKKAQSDCPYIDFMTHKLNKILIDNGFQPEWIL 260 (342)
T ss_pred CCCcchhhccCCCccchhhhhhhhhhhcCCCChHHHh
Confidence 56888887 4566778899999999998899999964
No 10
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=35.93 E-value=16 Score=20.57 Aligned_cols=7 Identities=71% Similarity=1.365 Sum_probs=5.1
Q ss_pred cccCCCc
Q psy1970 417 ERNCPNG 423 (479)
Q Consensus 417 erncpng 423 (479)
-+|||.|
T Consensus 3 i~nCP~G 9 (9)
T PF00220_consen 3 IRNCPIG 9 (9)
T ss_pred cccCCCC
Confidence 3689976
No 11
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=34.98 E-value=17 Score=36.42 Aligned_cols=15 Identities=60% Similarity=0.928 Sum_probs=11.5
Q ss_pred cceeeecCcccccccceeeeecCCccC
Q psy1970 452 KLNVIRHPTDFATNWTGMLVDTGGVSA 478 (479)
Q Consensus 452 klnvirhptdfatnwtgmlvdtggvsa 478 (479)
-+.|+.||| ||||||
T Consensus 198 yIsVLt~PT------------tGGVsA 212 (294)
T COG0777 198 YISVLTDPT------------TGGVSA 212 (294)
T ss_pred eEEEecCCC------------ccchhH
Confidence 456788887 788887
No 12
>PF08816 Ivy: Inhibitor of vertebrate lysozyme (Ivy); InterPro: IPR014453 C-type lysozyme enzymes, such as hen egg white lysozyme (HEWL), provide anti-bacterial activity by cleaving peptidoglycan in Gram-positive bacterial cell walls. In humans, C-type lysozyme is found in all secretions, including tears and saliva. Certain Gram-positive bacteria can produce proteins with anti-lysozyme activity known as Inhibitor of Vertebrate Lysozyme (IVY), which act as virulence factors [, ]. IVY proteins have a 3-layer alpha(2)/beta(5)/alpha(2) topology, and contain a protruding 5-residue loop that is essential for their inhibitory effect [].; GO: 0043086 negative regulation of catalytic activity, 0042597 periplasmic space; PDB: 1GPQ_A 1XS0_A 1UUZ_B.
Probab=34.66 E-value=21 Score=31.04 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=30.5
Q ss_pred ccccCCCceeeeecCCCCCCcchhhhhhcccccccccceeeecCcccccc-ccee
Q psy1970 416 EERNCPNGVLIGKIGPESNKPIDSAVMASQTDRQTHKLNVIRHPTDFATN-WTGM 469 (479)
Q Consensus 416 eerncpngvligkigpesnkpidsavmasqtdrqthklnvirhptdfatn-wtgm 469 (479)
+..+|+|.-||.-+.|.+..- ..-----.-++.++.||+.|||- |.|+
T Consensus 52 kpHdC~~~~l~vlfs~d~~~a------~gl~v~v~d~~~a~~~ps~~a~~~wlG~ 100 (118)
T PF08816_consen 52 KPHDCANNRLYVLFSPDKKQA------YGLLVEVPDTPSADDSPSKYATYRWLGK 100 (118)
T ss_dssp -TT-TTTEEEEEEEETTTTEE------EEEEEE--S-TCCCCTCCCCEEEEEESS
T ss_pred cccCCCcCeEEEEECCCCCce------EEEEEecCCCcccccCcchhheeeecCC
Confidence 356899999999998876642 11111112345778899999986 8775
No 13
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=28.87 E-value=45 Score=27.44 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=11.0
Q ss_pred cccccceeeeecCCc
Q psy1970 462 FATNWTGMLVDTGGV 476 (479)
Q Consensus 462 fatnwtgmlvdtggv 476 (479)
+...+..+||||-|+
T Consensus 141 ~~~~~~~~liDtPG~ 155 (155)
T cd01849 141 VKLDNKIKLLDTPGI 155 (155)
T ss_pred EEecCCEEEEECCCC
Confidence 333467899999985
No 14
>PF08956 DUF1869: Domain of unknown function (DUF1869); InterPro: IPR015051 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 1NEI_A.
Probab=28.43 E-value=32 Score=27.95 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=17.9
Q ss_pred ccCCCceeeeecCCCCCCcchhhhhhcc
Q psy1970 418 RNCPNGVLIGKIGPESNKPIDSAVMASQ 445 (479)
Q Consensus 418 rncpngvligkigpesnkpidsavmasq 445 (479)
.||+|||-+-|+-|.+..-.+.++.|+.
T Consensus 11 TNn~NGVSVDk~~~~~~el~~P~~aA~~ 38 (60)
T PF08956_consen 11 TNNNNGVSVDKEFAAPMELQDPDVAADA 38 (60)
T ss_dssp EETTT--EEEEEE--SCGGC-HHHHHHH
T ss_pred EeCCCceEeecccCChhhhcCcHHHHHH
Confidence 5999999999998877766666666653
No 15
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=28.26 E-value=33 Score=26.49 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=23.1
Q ss_pred CceeeeecCCCCCCcchhhhhhcccccccccceeeecCcccccccceeeeecCCc
Q psy1970 422 NGVLIGKIGPESNKPIDSAVMASQTDRQTHKLNVIRHPTDFATNWTGMLVDTGGV 476 (479)
Q Consensus 422 ngvligkigpesnkpidsavmasqtdrqthklnvirhptdfatnwtgmlvdtggv 476 (479)
.|+||||=| +.++|.- +-+|.+-|.. ...|+-+.||++|.
T Consensus 35 ~g~LIGk~G----~tL~AlQ---------~L~~~~~~~~--~~~~~~v~lDv~~Y 74 (77)
T cd02414 35 IGLLIGKRG----KTLDALQ---------YLANLVLNRN--TGEYVRITLDVEGY 74 (77)
T ss_pred CCeEECCCC----ccHHHHH---------HHHHHHHhhc--cCCceEEEEECccc
Confidence 399999966 3444431 1122222221 25578889999885
No 16
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=24.53 E-value=31 Score=35.26 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=33.2
Q ss_pred ccCCCceeeeecCCCCCCcchhhhhhcccccccccceeeecCcccccccceeeee
Q psy1970 418 RNCPNGVLIGKIGPESNKPIDSAVMASQTDRQTHKLNVIRHPTDFATNWTGMLVD 472 (479)
Q Consensus 418 rncpngvligkigpesnkpidsavmasqtdrqthklnvirhptdfatnwtgmlvd 472 (479)
..-|+|.||+-.-...|.+++.|++.+ ..+.+|++...|.-| ..|..+.|.
T Consensus 333 ~LapDG~V~sV~~sSGd~aldrAA~~A---ar~a~lP~pP~~~vy-e~~k~i~lt 383 (387)
T PRK09510 333 KLAPDGTLLDIKKEGGDPALCQAALAA---AKTAKIPKPPSQEVY-EKFKNAPLD 383 (387)
T ss_pred EEcCCCcEEeeeeCCCCHHHHHHHHHH---HHcCCCCCCCchHHH-Hhhccceee
Confidence 445888888655444466799998887 456677666555434 558776664
No 17
>PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure.; InterPro: IPR001086 Prephenate dehydratase (4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate to phenylpyruvate. In microorganisms it is part of the terminal pathway of phenylalanine biosynthesis. In some bacteria such as Escherichia coli PDT is part of a bifunctional enzyme (P-protein) that also catalyses the transformation of chorismate into prephenate (chorismate mutase, IPR002701 from INTERPRO, 5.4.99.5 from EC) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional PDT aligns well with the C-terminal part of P-proteins [].; GO: 0004664 prephenate dehydratase activity, 0009094 L-phenylalanine biosynthetic process; PDB: 3MWB_B 2QMX_A 2QMW_A 3LUY_A.
Probab=23.44 E-value=36 Score=29.81 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.2
Q ss_pred hhhhhcccccccccceeeecC-cccccccceeee
Q psy1970 439 SAVMASQTDRQTHKLNVIRHP-TDFATNWTGMLV 471 (479)
Q Consensus 439 savmasqtdrqthklnvirhp-tdfatnwtgmlv 471 (479)
+|+++|..--+.|+|.||.+- .|+..|+|=+||
T Consensus 143 ~aAI~s~~aa~~y~L~il~~~I~d~~~N~TRF~v 176 (181)
T PF00800_consen 143 DAAIASEEAAELYGLEILARNIQDNPNNYTRFLV 176 (181)
T ss_dssp EEEEEECCHHHHTTEEEEECS-SSSTT-EEEEEE
T ss_pred eEEECCHHHHHHcCccChhhcCCCCCCCeEeEEE
Confidence 677788888899999999755 899999999886
No 18
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=23.20 E-value=44 Score=27.07 Aligned_cols=13 Identities=31% Similarity=0.739 Sum_probs=11.0
Q ss_pred Ccccccccceeee
Q psy1970 459 PTDFATNWTGMLV 471 (479)
Q Consensus 459 ptdfatnwtgmlv 471 (479)
-++|..||.||++
T Consensus 25 s~~~S~~w~G~v~ 37 (64)
T PRK06393 25 DEKTTTEWFGFLI 37 (64)
T ss_pred CCcCCcCcceEEE
Confidence 3688999999986
No 19
>cd02424 Peptidase_C39E A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family, which contains Colicin V perocessing peptidase.
Probab=23.17 E-value=23 Score=28.23 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=11.8
Q ss_pred ecCcccccccceeee
Q psy1970 457 RHPTDFATNWTGMLV 471 (479)
Q Consensus 457 rhptdfatnwtgmlv 471 (479)
-....|+.+|||.++
T Consensus 113 ~s~~~f~~~wsG~vl 127 (129)
T cd02424 113 ITYKEFEKIFNNIII 127 (129)
T ss_pred eCHHHHHHHhcCeEE
Confidence 355789999999765
No 20
>KOG1098|consensus
Probab=20.53 E-value=51 Score=36.69 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=33.7
Q ss_pred cccCCCceeeeecCCCCCCcchhhhhhc------------ccccccccceeeecCc--ccccccc
Q psy1970 417 ERNCPNGVLIGKIGPESNKPIDSAVMAS------------QTDRQTHKLNVIRHPT--DFATNWT 467 (479)
Q Consensus 417 erncpngvligkigpesnkpidsavmas------------qtdrqthklnvirhpt--dfatnwt 467 (479)
..+||.|-||--|--..-|||-..+... |.-.+|||.+||-|-. ...+||+
T Consensus 63 ~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~ 127 (780)
T KOG1098|consen 63 SQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWV 127 (780)
T ss_pred HHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHH
Confidence 4579988887666666667775544332 3346899999999942 3445564
Done!