Query psy1970
Match_columns 479
No_of_seqs 7 out of 9
Neff 1.3
Searched_HMMs 29240
Date Fri Aug 16 20:55:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuz_A IVY, inhibitor of verte 24.0 20 0.00068 31.1 0.5 48 416-469 60-109 (137)
2 1ryq_A DNA-directed RNA polyme 23.1 26 0.00088 27.5 1.0 12 461-472 33-44 (69)
3 3oc4_A Oxidoreductase, pyridin 22.2 17 0.00057 33.0 -0.3 48 421-469 378-431 (452)
4 2y7l_A NT_ALS9-2, agglutinin-l 20.1 23 0.00078 34.1 0.1 44 417-463 186-231 (312)
5 2vp4_A Deoxynucleoside kinase; 20.0 49 0.0017 27.3 2.1 49 408-460 5-54 (230)
6 2www_A Methylmalonic aciduria 19.6 66 0.0023 29.0 3.0 10 468-477 169-178 (349)
7 3lxx_A GTPase IMAP family memb 18.9 27 0.00091 28.6 0.3 8 469-476 81-88 (239)
8 2cmz_A Spike glycoprotein; mem 17.2 18 0.00062 35.3 -1.3 39 418-460 367-409 (423)
9 2gti_A Replicase polyprotein 1 16.0 45 0.0015 33.1 1.1 30 409-438 119-150 (370)
10 3rg8_A Phosphoribosylaminoimid 15.6 45 0.0015 29.3 0.9 26 418-447 103-128 (159)
No 1
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=23.97 E-value=20 Score=31.05 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=31.8
Q ss_pred ccccCCCceeeeecCCCCCCcchhhhhhcccccccccc-eeeecCccccc-cccee
Q psy1970 416 EERNCPNGVLIGKIGPESNKPIDSAVMASQTDRQTHKL-NVIRHPTDFAT-NWTGM 469 (479)
Q Consensus 416 eerncpngvligkigpesnkpidsavmasqtdrqthkl-nvirhptdfat-nwtgm 469 (479)
+..||+|.-||.-+.|.+++- +-|-+..+ -|+ ..+.||+.||+ .|.|.
T Consensus 60 kpHDC~~~~l~Vlfs~dk~~a---~Gl~v~v~---d~~~~a~~~Ps~~a~~~WLG~ 109 (137)
T 1uuz_A 60 KPHDCGNNRLLVAFRGDKSAA---YGLQVSLP---DEPAEVMQTPSKYATYRWYGE 109 (137)
T ss_dssp CTTCTTTEEEEEEEETTSSCE---EEEEEECC---SCTTTTTTCGGGTCEEEEESC
T ss_pred CCCCCccCeEEEEECCCcCeE---EEEEEecC---CCccccccCcchhheeEeeCC
Confidence 356899999999999887654 22222221 234 55668999986 47775
No 2
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=23.11 E-value=26 Score=27.52 Aligned_cols=12 Identities=17% Similarity=0.684 Sum_probs=10.1
Q ss_pred ccccccceeeee
Q psy1970 461 DFATNWTGMLVD 472 (479)
Q Consensus 461 dfatnwtgmlvd 472 (479)
.|.+||.||++=
T Consensus 33 ~tS~~w~G~ViI 44 (69)
T 1ryq_A 33 DLSEEWFDLVII 44 (69)
T ss_dssp CEESCEEEEEEE
T ss_pred ccCCccceEEEE
Confidence 489999999874
No 3
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=22.18 E-value=17 Score=32.96 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCceeeee--cCC-CCCCcchhhhhhccccccc---ccceeeecCccccccccee
Q psy1970 421 PNGVLIGK--IGP-ESNKPIDSAVMASQTDRQT---HKLNVIRHPTDFATNWTGM 469 (479)
Q Consensus 421 pngvligk--igp-esnkpidsavmasqtdrqt---hklnvirhptdfatnwtgm 469 (479)
.+|.|+|- ||| ....-|..+.+|-|..-.. ..+.+.-||| |+.-|..+
T Consensus 378 ~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~-~~~~~~~~ 431 (452)
T 3oc4_A 378 VTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPS-LTNIYDIT 431 (452)
T ss_dssp TTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTT-TSCSSCHH
T ss_pred CCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCC-CCCchhHH
Confidence 35778874 889 6777787766665544333 3344678998 88877654
No 4
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=20.10 E-value=23 Score=34.09 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=30.4
Q ss_pred cccCCCceeeeecCCCCC--CcchhhhhhcccccccccceeeecCcccc
Q psy1970 417 ERNCPNGVLIGKIGPESN--KPIDSAVMASQTDRQTHKLNVIRHPTDFA 463 (479)
Q Consensus 417 erncpngvligkigpesn--kpidsavmasqtdrqthklnvirhptdfa 463 (479)
-.+||||...|+||--++ -+||-.- -.--.|.+||-...|+..-
T Consensus 186 ~~~CpnGy~SG~ig~~~~~~~~iDCS~---v~v~itn~~NdW~~P~~~~ 231 (312)
T 2y7l_A 186 VPQCENGYTSGIMGFVASNGATIDCSN---VNIGISKGLNDWNFPVSSE 231 (312)
T ss_dssp CCCCTTCEEEEEEEEEECTTEEEEEEE---EEEEEEESBCTTSCBSCCB
T ss_pred cCCCCCCcEeeeEeEEcCCCccccccc---hhhhhhcccccccCccccc
Confidence 368999999999997754 4666321 1223466788888888763
No 5
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.00 E-value=49 Score=27.33 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=23.8
Q ss_pred CCCCCCCcccccCCCceeeeecCCC-CCCcchhhhhhcccccccccceeeecCc
Q psy1970 408 KDNSVDGKEERNCPNGVLIGKIGPE-SNKPIDSAVMASQTDRQTHKLNVIRHPT 460 (479)
Q Consensus 408 kdnsvdgkeerncpngvligkigpe-snkpidsavmasqtdrqthklnvirhpt 460 (479)
|.+..-|+..-+.+.|.+|+-+||. |.|.-=...++.. .+++.+..+|.
T Consensus 5 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 5 ASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp -------CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccchhhCCccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3344445545566778888888875 3454333333333 34555566664
No 6
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=19.55 E-value=66 Score=29.04 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=7.5
Q ss_pred eeeeecCCcc
Q psy1970 468 GMLVDTGGVS 477 (479)
Q Consensus 468 gmlvdtggvs 477 (479)
-+||||.|+.
T Consensus 169 ~iliDT~Gi~ 178 (349)
T 2www_A 169 IILIETVGVG 178 (349)
T ss_dssp EEEEECCCC-
T ss_pred EEEEECCCcc
Confidence 3699999973
No 7
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=18.90 E-value=27 Score=28.59 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.6
Q ss_pred eeeecCCc
Q psy1970 469 MLVDTGGV 476 (479)
Q Consensus 469 mlvdtggv 476 (479)
.||||.|+
T Consensus 81 ~liDTpG~ 88 (239)
T 3lxx_A 81 VVVDTPGI 88 (239)
T ss_dssp EEEECCSC
T ss_pred EEEECCCc
Confidence 78899885
No 8
>2cmz_A Spike glycoprotein; membrane, lipoprotein, transmembrane, envelope protein, membrane protein; HET: PE4; 2.40A {Vesicular stomatitis indiana virus} SCOP: e.76.1.2 PDB: 2j6j_A*
Probab=17.24 E-value=18 Score=35.32 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=24.6
Q ss_pred ccCCCceeeeecCCCCCCcchhhhhh----cccccccccceeeecCc
Q psy1970 418 RNCPNGVLIGKIGPESNKPIDSAVMA----SQTDRQTHKLNVIRHPT 460 (479)
Q Consensus 418 rncpngvligkigpesnkpidsavma----sqtdrqthklnvirhpt 460 (479)
.++|||++.+.=| ---| ++++. -+.-.+.|++++|-||.
T Consensus 367 ~~g~NGi~~~~~~--i~~P--~~~~~~~~~d~~l~~~~~~~~v~HP~ 409 (423)
T 2cmz_A 367 EIGPNGVLRTSSG--YKFP--LYMIGHGMLDSDLHLSSKAQVFEHPH 409 (423)
T ss_dssp EECGGGCEEETTE--EECC--HHHHHHHHHHHHHHHHCCCEECCCCC
T ss_pred eeccCeEEECCCe--EEec--HHHhccccchhhhhccccCccccCCc
Confidence 3799999987322 1112 23322 23345788999999996
No 9
>2gti_A Replicase polyprotein 1AB; MHV, NSP15, F307L, viral protein; 2.15A {Murine hepatitis virus} SCOP: c.66.1.48 d.294.1.2 PDB: 2gth_A
Probab=16.02 E-value=45 Score=33.10 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=22.5
Q ss_pred CCCCCCcccc--cCCCceeeeecCCCCCCcch
Q psy1970 409 DNSVDGKEER--NCPNGVLIGKIGPESNKPID 438 (479)
Q Consensus 409 dnsvdgkeer--ncpngvligkigpesnkpid 438 (479)
||++.|.-++ .|||||||..+-+.+-.+|-
T Consensus 119 D~r~~g~~e~F~~~~NaVliS~~~vK~l~~ik 150 (370)
T 2gti_A 119 DGRDNGALEAFKKCRNGVYINTTKIKSLSMIK 150 (370)
T ss_dssp ETTSTTHHHHHHHCSSEEEEESSCCTTSCCEE
T ss_pred cCCCcchHHHhhcCCCeEEEEccccccccccc
Confidence 6777777664 79999999988776655554
No 10
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=15.55 E-value=45 Score=29.29 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.2
Q ss_pred ccCCCceeeeecCCCCCCcchhhhhhcccc
Q psy1970 418 RNCPNGVLIGKIGPESNKPIDSAVMASQTD 447 (479)
Q Consensus 418 rncpngvligkigpesnkpidsavmasqtd 447 (479)
-+||.||-+..| +.+...|++|.|.-
T Consensus 103 vqmp~GvpVatv----~~~~nAa~lA~~Il 128 (159)
T 3rg8_A 103 LRMPSGISPALV----LEPKNAALLAARIF 128 (159)
T ss_dssp HCCCTTCCCEEC----CSHHHHHHHHHHHH
T ss_pred HhCCCCCceEEe----cCchHHHHHHHHHH
Confidence 369999999988 67888888887753
Done!