Query psy1970
Match_columns 479
No_of_seqs 7 out of 9
Neff 1.3
Searched_HMMs 13730
Date Fri Aug 16 20:55:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtia1 c.66.1.48 (A:1-194) Ns 37.0 5 0.00036 34.8 1.1 30 409-438 118-149 (194)
2 d1v10a2 b.6.1.3 (A:137-304) La 34.3 26 0.0019 27.8 5.1 65 377-458 6-72 (168)
3 d1ryqa_ g.41.9.3 (A:) putative 34.0 6 0.00043 29.0 1.0 12 460-471 30-41 (67)
4 d1u0la2 c.37.1.8 (A:69-293) Pr 33.0 7.3 0.00053 32.9 1.5 19 461-479 142-160 (225)
5 d1uuza_ d.233.1.1 (A:) Inhibit 30.5 6.7 0.00049 32.0 0.8 47 417-468 61-108 (130)
6 d1nhpa3 d.87.1.1 (A:322-447) N 28.4 11 0.00077 28.0 1.6 50 417-467 57-112 (126)
7 d2h85a1 c.66.1.48 (A:1-190) Ns 28.2 5.9 0.00043 34.2 0.0 30 409-438 124-155 (190)
8 d1h6va3 d.87.1.1 (A:367-499) M 25.1 7.6 0.00056 29.5 0.2 52 421-473 65-120 (133)
9 d3grsa3 d.87.1.1 (A:364-478) G 21.6 8.1 0.00059 28.5 -0.3 47 421-468 63-113 (115)
10 d1t9ha2 c.37.1.8 (A:68-298) Pr 17.9 16 0.0012 30.8 0.7 14 466-479 148-161 (231)
No 1
>d2gtia1 c.66.1.48 (A:1-194) Nsp15 {Murine hepatitis virus, MHV [TaxId: 11138]}
Probab=37.03 E-value=5 Score=34.78 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCCCCCcccc--cCCCceeeeecCCCCCCcch
Q psy1970 409 DNSVDGKEER--NCPNGVLIGKIGPESNKPID 438 (479)
Q Consensus 409 dnsvdgkeer--ncpngvligkigpesnkpid 438 (479)
|+++.|.-++ .|||||||.++-+.+-.||-
T Consensus 118 D~r~~gs~e~F~~~~NaVliS~~kvK~l~~ik 149 (194)
T d2gtia1 118 DGRDNGALEAFKKCRNGVYINTTKIKSLSMIK 149 (194)
T ss_dssp ETTSTTHHHHHHHCSSEEEEESSCCTTSCCEE
T ss_pred cCCcccHHHHHhcCCCEEEEEccceeeeccee
Confidence 6677777664 79999999998876555554
No 2
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId: 219653]}
Probab=34.31 E-value=26 Score=27.75 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=32.3
Q ss_pred cccceeeeeeeecCCCccCCCCcccccCCCCCCCCCCCcccccCCCceeeeecCCCCCCcc--hhhhhhcccccccccce
Q psy1970 377 GERTTQLTACYRDNSSDYREGPLTRRHGIEGKDNSVDGKEERNCPNGVLIGKIGPESNKPI--DSAVMASQTDRQTHKLN 454 (479)
Q Consensus 377 ~erttqltacyrdnssdyregpltrrhgiegkdnsvdgkeerncpngvligkigpesnkpi--dsavmasqtdrqthkln 454 (479)
.+.+-.|.-||-.++...-. +++..-+||+++||.-.|...+.+. ...++ .-.-.++++|.
T Consensus 6 ~e~vi~lsDW~h~~~~~l~~----------------~~~~~~~~pd~~liNGkg~~~~~~~~~~~~~~-~v~~g~~~rlR 68 (168)
T d1v10a2 6 ASTVITIADWYHSLSTVLFP----------------NPNKAPPAPDTTLINGLGRNSANPSAGQLAVV-SVQSGKRYRFR 68 (168)
T ss_dssp GGGEEEEEEECSSCCC-----------------------CCCSCCSEEEETTBCCCSSCGGGSCCCEE-EECTTCEEEEE
T ss_pred CccEEEEEECCCCCHHHHHh----------------ccCCCCCCCceeeecCCCCcCCCCcCCCceEE-EECCCCEEEEE
Confidence 46677788888766543211 1222356888888864444333221 11111 12234666777
Q ss_pred eeec
Q psy1970 455 VIRH 458 (479)
Q Consensus 455 virh 458 (479)
+|..
T Consensus 69 lina 72 (168)
T d1v10a2 69 IVST 72 (168)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6653
No 3
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=34.00 E-value=6 Score=28.97 Aligned_cols=12 Identities=17% Similarity=0.783 Sum_probs=10.5
Q ss_pred cccccccceeee
Q psy1970 460 TDFATNWTGMLV 471 (479)
Q Consensus 460 tdfatnwtgmlv 471 (479)
+.|.+||.||++
T Consensus 30 ~~~S~~~~G~v~ 41 (67)
T d1ryqa_ 30 RDLSEEWFDLVI 41 (67)
T ss_dssp CCEESCEEEEEE
T ss_pred CcCCCCcccEEE
Confidence 678999999986
No 4
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=32.99 E-value=7.3 Score=32.87 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=14.0
Q ss_pred ccccccceeeeecCCccCC
Q psy1970 461 DFATNWTGMLVDTGGVSAM 479 (479)
Q Consensus 461 dfatnwtgmlvdtggvsam 479 (479)
-|.-+..|+||||-|++.+
T Consensus 142 l~~l~~gg~iiDTPG~r~~ 160 (225)
T d1u0la2 142 LLKFDFGGYVVDTPGFANL 160 (225)
T ss_dssp EEECTTSCEEESSCSSTTC
T ss_pred EEEECCCcEEEeCCccccc
Confidence 3444567999999999753
No 5
>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.53 E-value=6.7 Score=31.95 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=31.0
Q ss_pred cccCCCceeeeecCCCCCCcchhhhhhcccccccccceeeecCcccccc-cce
Q psy1970 417 ERNCPNGVLIGKIGPESNKPIDSAVMASQTDRQTHKLNVIRHPTDFATN-WTG 468 (479)
Q Consensus 417 erncpngvligkigpesnkpidsavmasqtdrqthklnvirhptdfatn-wtg 468 (479)
..+|+|..||.-+.+.+++-.- |.+... -.-+.++.|||-|||- |.|
T Consensus 61 pHDC~~~~l~Vafs~dk~~a~G---mlV~v~--d~~~~a~~~Ps~~a~y~wLG 108 (130)
T d1uuza_ 61 PHDCGNNRLLVAFRGDKSAAYG---LQVSLP--DEPAEVMQTPSKYATYRWYG 108 (130)
T ss_dssp TTCTTTEEEEEEEETTSSCEEE---EEEECC--SCTTTTTTCGGGTCEEEEES
T ss_pred CcCCCcCeEEEEECCCCCceEE---EEEecC--CCCchhhcCcccceeEEecC
Confidence 4589999999999998875332 222211 1123577899999985 554
No 6
>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}
Probab=28.38 E-value=11 Score=28.00 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=31.5
Q ss_pred cccCCCceeeee--cCCC-CCCcchhhhhhcccccccccc---eeeecCcccccccc
Q psy1970 417 ERNCPNGVLIGK--IGPE-SNKPIDSAVMASQTDRQTHKL---NVIRHPTDFATNWT 467 (479)
Q Consensus 417 erncpngvligk--igpe-snkpidsavmasqtdrqthkl---nvirhptdfatnwt 467 (479)
--+.-+|.|||- |||. ...-|..+.+|-|..-....| -+..||| |+..|.
T Consensus 57 i~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt-~se~~~ 112 (126)
T d1nhpa3 57 VYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPA-FDKPWN 112 (126)
T ss_dssp EECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTT-TCCSSC
T ss_pred EEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCC-CchhHH
Confidence 334456888774 6887 455678777766655544444 3446898 777774
No 7
>d2h85a1 c.66.1.48 (A:1-190) Nsp15 {SARS coronavirus [TaxId: 227859]}
Probab=28.15 E-value=5.9 Score=34.22 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCCCCCcccc--cCCCceeeeecCCCCCCcch
Q psy1970 409 DNSVDGKEER--NCPNGVLIGKIGPESNKPID 438 (479)
Q Consensus 409 dnsvdgkeer--ncpngvligkigpesnkpid 438 (479)
|+++.|.-++ .|||||||.++-+.+-.||-
T Consensus 124 D~r~~gs~e~F~~~~NaVliS~~kvK~l~~ik 155 (190)
T d2h85a1 124 DGRVEGQVDLFRNARNGVLITEGSVKGLTPSK 155 (190)
T ss_dssp ETTSTTHHHHHHHCSSEEEEESSCBTTBCCEE
T ss_pred cCCcccHHHHHhcCCCEEEEeccccceeccee
Confidence 6677776664 79999999988776555554
No 8
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.14 E-value=7.6 Score=29.46 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCceeeee--cCCCCCCcchhhhhhcccccccccc--eeeecCcccccccceeeeec
Q psy1970 421 PNGVLIGK--IGPESNKPIDSAVMASQTDRQTHKL--NVIRHPTDFATNWTGMLVDT 473 (479)
Q Consensus 421 pngvligk--igpesnkpidsavmasqtdrqthkl--nvirhptdfatnwtgmlvdt 473 (479)
.+|.|+|- |||...--|..+++|-+..-..+.| .+.-||| |+--|+.|.+..
T Consensus 65 ~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT-~sE~~~~l~~~~ 120 (133)
T d1h6va3 65 DNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPV-CAEIFTTLSVTK 120 (133)
T ss_dssp GTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTC-GGGGGGGCCCBG
T ss_pred CcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCC-HHHHHHHhhhhh
Confidence 37888885 8999888888777766554444433 5778998 466677776654
No 9
>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=8.1 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=33.0
Q ss_pred CCceeee--ecCCCCCCcchhhhhhcccccccccc--eeeecCcccccccce
Q psy1970 421 PNGVLIG--KIGPESNKPIDSAVMASQTDRQTHKL--NVIRHPTDFATNWTG 468 (479)
Q Consensus 421 pngvlig--kigpesnkpidsavmasqtdrqthkl--nvirhptdfatnwtg 468 (479)
.+|.||| -+||....-|..+.+|-+..-..+.| .+.-||| |+-.|..
T Consensus 63 ~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT-~sE~l~~ 113 (115)
T d3grsa3 63 KEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPT-SSEELVT 113 (115)
T ss_dssp TTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSC-SGGGGGS
T ss_pred CCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCC-HHHHHHh
Confidence 4789999 79999998888887776655444443 4667888 3444443
No 10
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=17.88 E-value=16 Score=30.84 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.4
Q ss_pred cceeeeecCCccCC
Q psy1970 466 WTGMLVDTGGVSAM 479 (479)
Q Consensus 466 wtgmlvdtggvsam 479 (479)
+.|+||||-|++.+
T Consensus 148 ~gg~iiDTPG~r~~ 161 (231)
T d1t9ha2 148 SGGLVADTPGFSSL 161 (231)
T ss_dssp TTEEEESSCSCSSC
T ss_pred CCCEEEECCccccc
Confidence 36999999999753
Done!