RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1970
(479 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.10
Identities = 53/451 (11%), Positives = 128/451 (28%), Gaps = 109/451 (24%)
Query: 3 ILVERDGER-------VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLER 55
I++ +D L E ++++ E VL + + ++ + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 56 DGERVLERDGERVLERDGERVLERDGERVLE-RDGERVLERD-----------GERVLE- 102
+ L D + + + R+ + L+ R L G+ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRL-----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 103 ---RDGERVLEKDGERVL------ERDGERVLERDGERVLERDGERVLERDGERVLERDG 153
+V K ++ E VLE + + + D D ++
Sbjct: 169 DVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 154 ERVLERDGERVLERDGER---VLERD--GERVLER-DGE-RVLERDGERVLERDGERVLE 206
+ + + E VL + + + ++L + R +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKIL------LTTRFKQVTDF 280
Query: 207 RDGERVLERDGERVLERDGERVLERDGERVLEKDGERVLERDGERVLERD---------- 256
L+ + + + +L K L+ + L R+
Sbjct: 281 LSAATT----THISLDHHSMTLTPDEVKSLLLK----YLDCRPQD-LPREVLTTNPRRLS 331
Query: 257 --GERVLERDG----ERVLERDGERVLERDGERVLERDGERVLERDGER-------VLER 303
E + RDG + + +++ ++E VLE R V
Sbjct: 332 IIAESI--RDGLATWDNWKHVNCDKL-----TTIIESSLN-VLEPAEYRKMFDRLSVFPP 383
Query: 304 DG---ERVLERDGERVLERDGERVLERDGER-VLERDGER------------VLERDGER 347
+L V++ D V+ + + ++E+ + ++ + E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 348 VLERDGERVLER-DGERVLEKDGERVLERDG 377
L R +++ + + + D D
Sbjct: 444 ALHR---SIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 31.4 bits (70), Expect = 0.75
Identities = 46/390 (11%), Positives = 110/390 (28%), Gaps = 93/390 (23%)
Query: 68 VLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLEKDGERVLERDGERVLER 127
L E ++++ E VL + + ++ + + + L D + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 128 DGERVLERDGERVLE-RDGERVLERD-----------GERVLE----RDGERVLERDGER 171
+ R+ + L+ R L G+ + +V + +
Sbjct: 130 NVSRL-----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFK 183
Query: 172 VL------ERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDG 225
+ E VLE + + + D D ++ + + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 226 ER---VLERD--GERVLEK-DGE-RVLERDGERVLERDGE----RVLERDGERVLERDGE 274
E VL + + + ++L + R + L+
Sbjct: 244 ENCLLVL-LNVQNAKAWNAFNLSCKIL------LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 275 RVLERDGERVLERDGERVLERD-------------------GERVLERDG----ERVLER 311
+ + + +L + L+ E + RDG +
Sbjct: 297 TLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHV 350
Query: 312 DGERVLERDGERVLERDGERVLERDGER-------VLERDG---ERVLERDGERVLERDG 361
+ +++ ++E VLE R V +L V++ D
Sbjct: 351 NCDKL-----TTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 362 ERVLEKDGER-VLERDG-ERTTQLTACYRD 389
V+ K + ++E+ E T + + Y +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.12
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 80 DGERVLERDGERVLERDGERVLERDGERVLEKDGERVLERDGERVLERDGERVLERDGER 139
E V ++D V + +LE G R++E + + + +++ E ++E D E
Sbjct: 881 TKEPVDDKD---VKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEP 934
Query: 140 VL--ERDGERVLERDGERVLERDGERVLER 167
+ E+ + G++V + E
Sbjct: 935 FEASKETAEQFKHQHGDKVDIFEIPETGEY 964
Score = 34.1 bits (78), Expect = 0.12
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 208 DGERVLERDGERVLERDGERVLERDGERVLEKDGERVLERDGERVLERDGERVLERDGER 267
E V ++D V + +LE G R++E + + + +++ E ++E D E
Sbjct: 881 TKEPVDDKD---VKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEP 934
Query: 268 VL--ERDGERVLERDGERVLERDGERVLER 295
+ E+ + G++V + E
Sbjct: 935 FEASKETAEQFKHQHGDKVDIFEIPETGEY 964
Score = 32.2 bits (73), Expect = 0.43
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 64 DGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLEKDGERVLERDGER 123
E V ++D V + +LE G R++E + + + +++ E ++E D E
Sbjct: 881 TKEPVDDKD---VKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEP 934
Query: 124 VL--ERDGERVLERDGERVLERDGERVLER 151
+ E+ + G++V + E
Sbjct: 935 FEASKETAEQFKHQHGDKVDIFEIPETGEY 964
Score = 32.2 bits (73), Expect = 0.43
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 144 DGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGER 203
E V ++D V + +LE G R++E + + + +++ E ++E D E
Sbjct: 881 TKEPVDDKD---VKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEP 934
Query: 204 VL--ERDGERVLERDGERVLERDGERVLER 231
+ E+ + G++V + E
Sbjct: 935 FEASKETAEQFKHQHGDKVDIFEIPETGEY 964
Score = 32.2 bits (73), Expect = 0.43
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 272 DGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGER 331
E V ++D V + +LE G R++E + + + +++ E ++E D E
Sbjct: 881 TKEPVDDKD---VKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEP 934
Query: 332 VL--ERDGERVLERDGERVLERDGERVLER 359
+ E+ + G++V + E
Sbjct: 935 FEASKETAEQFKHQHGDKVDIFEIPETGEY 964
Score = 29.1 bits (65), Expect = 4.1
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 8 DGERVLERD-----GERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVL- 61
E V ++D +LE G R++E + + + +++ E ++E D E
Sbjct: 881 TKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEPFEA 937
Query: 62 -ERDGERVLERDGERVLERDGERVLER 87
+ E+ + G++V + E
Sbjct: 938 SKETAEQFKHQHGDKVDIFEIPETGEY 964
Score = 28.7 bits (64), Expect = 5.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 336 DGERVLERDGERVLERDGERVLERDGERVLEKD 368
E V ++D V + +LE G R++E +
Sbjct: 881 TKEPVDDKD---VKAKYETSILEHSGIRLIEPE 910
Score = 28.7 bits (64), Expect = 5.5
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 4 LVERDGERVLERDGERVLERDGERVLERDGERVLERDGERVLERDGERVL--ERDGERVL 61
+ + +LE G R++E + + + +++ E ++E D E + E+
Sbjct: 890 VKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQ---EVIVEEDLEPFEASKETAEQFK 946
Query: 62 ERDGERVLERDGERVLER 79
+ G++V + E
Sbjct: 947 HQHGDKVDIFEIPETGEY 964
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.17
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 155 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 208
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 209 GERVLERDGERVLERDGERVLERDGE--------------------RVLEKDGERVLERD 248
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 249 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 287
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 288 DGERVLERDGERVLERDGERVLERDGERVLE 318
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 33.5 bits (76), Expect = 0.22
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 179 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 232
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 233 GERVLEKDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 272
G+ EK + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 273 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 311
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 312 DGERVLERDGERVLERDGERVLERDGERVLE 342
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 33.1 bits (75), Expect = 0.23
Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 57/210 (27%)
Query: 131 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 184
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 185 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 224
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 225 --------GE--------RVLE-RDGERVLEKDGE---RVLERDGERVLERDGERVLERD 264
GE V+ V+ G + RD L R ++ +
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE---LGRSNYGMIAIN 1813
Query: 265 GERVLERDGERVLERDGERVLERDGERVLE 294
RV + L+ ERV +R G ++E
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 33.1 bits (75), Expect = 0.24
Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 59/211 (27%)
Query: 139 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 192
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 193 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 232
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 233 --------GE--------RVLE-KDGERVL-ERDGE---RVLERDGERVLERDGERVLER 271
GE V+ + V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 272 DGERVLERDGERVLERDGERVLERDGERVLE 302
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 33.1 bits (75), Expect = 0.25
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 99 RVLERDGERVLEKDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 152
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 153 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 192
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 193 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 231
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 232 DGERVLEKDGERVLERDGERVLERDGERVLE 262
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 32.7 bits (74), Expect = 0.37
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 147 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 200
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 201 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLEKD 240
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 241 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 279
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 280 DGERVLERDGERVLERDGERVLERDGERVLE 310
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 32.7 bits (74), Expect = 0.38
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 171 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLER--D 224
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 225 GERVLERDGERVLEKDGERVLERDGE--------------------RVLERDGERVLERD 264
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 265 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 303
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 304 DGERVLERDGERVLERDGERVLERDGERVLE 334
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 31.9 bits (72), Expect = 0.50
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 203 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLEKDGERVLERDGERVLER--D 256
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 257 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 296
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 297 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 335
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 336 DGERVLERDGERVLERDGERVLERDGERVLE 366
+ RV + L+ ERV +R G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 31.9 bits (72), Expect = 0.63
Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 65/218 (29%)
Query: 187 RVLERDGERVLERDGERVLE--RDG--ERVLERDGERVLERDGERVLERDGERVLE--KD 240
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 241 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 280
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 281 --------GE--------RVLERDGERVLERDGERVL-ERDGE---RVLERDGERVLERD 320
GE V+ +E V+ R G + RD L R
Sbjct: 1757 ATFAGHSLGEYAALASLADVMS------IE-SLVEVVFYR-GMTMQVAVPRDE---LGRS 1805
Query: 321 GERVLERDGERVLERDGERVLERDGERVLERDGERVLE 358
++ + RV + L+ ERV +R G ++E
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Score = 31.6 bits (71), Expect = 0.68
Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 59/211 (27%)
Query: 211 RVLERDGERVLERDGERVLE--RDG--ERVLEKDGERVLERDGERVLERDGERVLER--D 264
V R + G +L+ + + GE+ G+R+ E + E D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFETIVD 1698
Query: 265 GERVLERDGERVLERDGERVLERDGE--------------------RVLERDGERVLERD 304
G+ E+ + + E + L+ G ++ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPAD 1756
Query: 305 --------GE--------RVLE-RDGERVL-ERDGE---RVLERDGERVLERDGERVLER 343
GE V+ V+ R G + RD L R ++
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRSNYGMIAI 1812
Query: 344 DGERVLERDGERVLERDGERVLEKDGERVLE 374
+ RV + L+ ERV ++ G ++E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGW-LVE 1842
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.141 0.385
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,579,880
Number of extensions: 646610
Number of successful extensions: 1647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 69
Length of query: 479
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 382
Effective length of database: 3,993,456
Effective search space: 1525500192
Effective search space used: 1525500192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)