RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1970
         (479 letters)



>d2h85a1 c.66.1.48 (A:1-190) Nsp15 {SARS coronavirus [TaxId:
           227859]}
          Length = 190

 Score = 26.7 bits (59), Expect = 4.2
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 409 DNSVDGKEER--NCPNGVLIGKIGPESNKPI 437
           D  V+G+ +   N  NGVLI +   +   P 
Sbjct: 124 DGRVEGQVDLFRNARNGVLITEGSVKGLTPS 154


>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli
           [TaxId: 562]}
          Length = 138

 Score = 26.4 bits (58), Expect = 4.5
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 76  VLERDGERVLERDGERVLERDGERVLERDGERVLEK-DGERVLERDGERV 124
           ++       L R  E VL+     +L+   +    K DGE+V++  G+R+
Sbjct: 94  IVVTPLGTRLCRPSEVVLD-----ILQDAQKGAFTKEDGEKVVDEAGKRL 138



 Score = 26.4 bits (58), Expect = 4.5
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 204 VLERDGERVLERDGERVLERDGERVLERDGERVLEK-DGERVLERDGERV 252
           ++       L R  E VL+     +L+   +    K DGE+V++  G+R+
Sbjct: 94  IVVTPLGTRLCRPSEVVLD-----ILQDAQKGAFTKEDGEKVVDEAGKRL 138


>d2gtia1 c.66.1.48 (A:1-194) Nsp15 {Murine hepatitis virus, MHV
           [TaxId: 11138]}
          Length = 194

 Score = 26.7 bits (59), Expect = 4.6
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 409 DNSVDGKEER--NCPNGVLIGKIGPESNKPI 437
           D   +G  E    C NGV I     +S   I
Sbjct: 118 DGRDNGALEAFKKCRNGVYINTTKIKSLSMI 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.141    0.385 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,964,432
Number of extensions: 112281
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 64
Length of query: 479
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,185,626
Effective search space: 462394140
Effective search space used: 462394140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)