BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1973
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Ubiquitin-Like Protein 4a (Gdx)
Length = 81
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+++VK LQG+E L V + + LK ++E L +PV Q+LL G+ L D K++ DY
Sbjct: 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 66
Query: 61 QIKEGTKLNLVVK 73
I +KLNLVVK
Sbjct: 67 SIGPNSKLNLVVK 79
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
LK ++E L +PV Q+LL G+ L D K++ DY I +KLNLVVK
Sbjct: 33 LKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNSKLNLVVK 79
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|G Chain G, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|J Chain J, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
Length = 152
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVN 120
KE T L+LV++ + GG + F +T + K ++V
Sbjct: 61 IQKEST-LHLVLR---------LRGGMQI--------------FVKTLTGKTIT--LEVE 94
Query: 121 SEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 95 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 148
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|G Chain G, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|C Chain C, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|E Chain E, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVO|A Chain A, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|2ZVO|G Chain G, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|3AXC|A Chain A, Crystal Structure Of Linear Diubiquitin
Length = 154
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVN 120
KE T L+LV++ + GG + F +T + K ++V
Sbjct: 63 IQKEST-LHLVLR---------LRGGMQI--------------FVKTLTGKTIT--LEVE 96
Query: 121 SEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 97 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 150
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 172
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVN 120
KE T L+LV++ + GG + F +T + K ++V
Sbjct: 81 IQKEST-LHLVLR---------LRGGMQI--------------FVKTLTGKTIT--LEVE 114
Query: 121 SEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 115 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 168
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|F Chain F, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 152
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 27/175 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVN 120
KE T L+LV++ LR F++ +T + ++V
Sbjct: 61 IQKEST-LHLVLR------------------LRGHMQIFVKTLTGKTIT-------LEVE 94
Query: 121 SEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 95 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 148
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin
Length = 152
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 61
+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 IKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNS 121
KE T L+LV++ + GG + F +T + K ++V
Sbjct: 62 QKEST-LHLVLR---------LRGGMQI--------------FVKTLTGKTIT--LEVEP 95
Query: 122 EMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 96 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 148
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 137 IQKEST-LHLVLR 148
>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 152
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|5 Chain 5, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 129
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I LDV + +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+ V + +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 101
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 1 MKISVKVLQGQEIF-LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M +++ + GQ+ + ++V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86
Query: 60 PQIKEGTKLNLV 71
I++G ++LV
Sbjct: 87 -HIQDGHSVHLV 97
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+ V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y I++G ++LV
Sbjct: 42 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLV 97
>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
Length = 77
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 1 MKISVKVLQGQEIF-LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M +++ + GQ+ + ++V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y
Sbjct: 3 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62
Query: 60 PQIKEGTKLNLV 71
I++G ++LV
Sbjct: 63 -HIQDGHSVHLV 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+ V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y I++G ++LV
Sbjct: 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLV 73
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|MM Chain m, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 128
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
Length = 152
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLV 71
KE T L+LV
Sbjct: 61 IQKEST-LHLV 70
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLV 70
>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure,
Dynamics And Thermodynamic Consequences
Length = 82
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G I L+V S +I +K+KI A IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI A IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site
Within The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 79
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 64 IQKEST-LHLVLR 75
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 18 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 75
>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
Length = 98
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 83 IQKEST-LHLVLR 94
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 37 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 94
>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex
pdb|1Q0W|B Chain B, Solution Structure Of Vps27 Amino-Terminal Uim-Ubiquitin
Complex
pdb|1WR1|A Chain A, The Complex Sturcture Of Dsk2p Uba With Ubiquitin
pdb|2G3Q|B Chain B, Solution Structure Of Ede1 Uba-Ubiquitin Complex
pdb|2JT4|B Chain B, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
pdb|3CMM|B Chain B, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|D Chain D, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|2L00|B Chain B, Solution Structure Of The Non-Covalent Complex Of The
Znf216 A20 Domain With Ubiquitin
Length = 76
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating
Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|D Chain D, Crystal Structure Of S. Pombe Ubiquitin Activating
Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 96
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 81 IQKEST-LHLVLR 92
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 35 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 92
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ +I +K ++ E IP Q+L+ G+ L D K DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY- 59
Query: 61 QIKEGTKLNLVV 72
I+ G+ L+LV+
Sbjct: 60 NIEGGSVLHLVL 71
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
I + +I +K ++ E IP Q+L+ G+ L D K DY I+ G+ L+LV+
Sbjct: 15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGGSVLHLVL 71
>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ GR L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ GR L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 2.15 Angstrom
pdb|4GSW|B Chain B, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 2.15 Angstrom
pdb|4GU2|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 1.35 Angstrom
Length = 80
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V SI +K KI E IP Q+L+ G+ L + K + DY
Sbjct: 4 MQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYN 63
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 64 IQKEST-LHLVLR 75
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V SI +K KI E IP Q+L+ G+ L + K + DY KE T L+LV++
Sbjct: 18 LEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKEST-LHLVLR 75
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 71
Query: 61 QIKEGTKLNLVVK 73
+I G+ L+LV++
Sbjct: 72 KILGGSVLHLVLR 84
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV++
Sbjct: 38 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLR 84
>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ GR L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDY- 59
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 60 NIQRESTLHLVLR 72
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ GR L D + + DY I+ + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDY-NIQRESTLHLVLR 72
>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 83
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I V+ L G+ I L+V S +I ++ +I + IP Q+L+ GR L D + + DY
Sbjct: 8 MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADY- 66
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 67 NIQRESTLHLVLR 79
Score = 30.8 bits (68), Expect = 0.77, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I ++ +I + IP Q+L+ GR L D + + DY I+ + L+LV++
Sbjct: 22 LEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADY-NIQRESTLHLVLR 79
>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin
Differentially Affect Its Recognition By Receptor
Proteins
Length = 76
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGT 66
KE T
Sbjct: 61 IQKEST 66
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGT 168
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 293
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 294 IQKEST-LHLVLR 305
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 248 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 305
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 71
Query: 61 QIKEGTKLNLVVK 73
+I G+ L+LV++
Sbjct: 72 KILGGSVLHLVLQ 84
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV++
Sbjct: 38 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLQ 84
>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 128
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V + +I +K KI + IP Q+L+ G+ L + + + DY
Sbjct: 1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V + +I +K KI + IP Q+L+ G+ L + + + DY KE T L+LV++
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKEST-LHLVLR 72
>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein
Length = 82
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I +DV+ ++ +K KI + IP Q+L+ G+ L D+ + DY
Sbjct: 6 MQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYN 65
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 66 VQKEST-LHLVLR 77
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I V+ ++ +K KI + IP Q+L+ G+ L D+ + DY KE T L+LV++
Sbjct: 20 IDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYNVQKEST-LHLVLR 77
>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 62 IQKEST-LHLVLR 73
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 16 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 73
>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 64 IQKEST-LHLVLR 75
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 75
>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 79
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 64 IQKEST-LHLVLR 75
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 75
>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 78
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 3 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 61
Query: 61 QIKEGTKLNLVV 72
+I G+ L+LV+
Sbjct: 62 KILGGSVLHLVL 73
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 28 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 73
>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 63 IQKEST-LHLVLR 74
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 17 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 74
>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
pdb|3JW0|X Chain X, E2~ubiquitin-Hect
pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 66 IQKEST-LHLVLR 77
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 20 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 77
>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex
Length = 77
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 2 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 60
Query: 61 QIKEGTKLNLVV 72
+I G+ L+LV+
Sbjct: 61 KILGGSVLHLVL 72
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 27 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 72
>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
pdb|2NVU|J Chain J, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
Length = 81
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 64
Query: 61 QIKEGTKLNLVV 72
+I G+ L+LV+
Sbjct: 65 KILGGSVLHLVL 76
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 31 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 76
>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex
With Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 77
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin
Carboxy T Hydrolase L1 Bound To Ubiquitin
Vinylmethylester.
pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy Te Hydrolase L1 Bound To Ubiquitin
Vinylmethylester
pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal
Hydrolase L1 Ubiquitin Vinylmethylester
pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
BOUND Ubiquitin Aldehyde
pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue
Domain And Ubiquitin
pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms
Resolution
pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And
Ubiquitin
pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From
Rdc Derived Ubiquitin Ensemble In Solution
pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Trans Isomer In Complex With Ubiquitin
pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex
With Ubiquitin
pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The
Vhs Domain Of Stam2
pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
Length = 76
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3H7S|A Chain A, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
pdb|3H7S|B Chain B, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
Length = 76
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
K + L+LV++
Sbjct: 61 IQKRESTLHLVLR 73
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY K + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKRESTLHLVLR 73
>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4F8C|D Chain D, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4FBJ|B Chain B, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 88
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 61 QIKEGTKLNLVV 72
+I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 71
>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 64
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 65 IQKEST-LHLVLR 76
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 19 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 76
>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using
Backbone Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 62 IQKEST-LHLVLR 73
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 16 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 73
>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal
Form
Length = 72
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1NDD|B Chain B, Structure Of Nedd8
pdb|1NDD|A Chain A, Structure Of Nedd8
pdb|1NDD|C Chain C, Structure Of Nedd8
pdb|1NDD|D Chain D, Structure Of Nedd8
pdb|1R4M|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1XT9|B Chain B, Crystal Structure Of Den1 In Complex With Nedd8
pdb|2KO3|A Chain A, Nedd8 Solution Structure
Length = 76
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 61 QIKEGTKLNLVV 72
+I G+ L+LV+
Sbjct: 60 KILGGSVLHLVL 71
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 71
>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
pdb|3GZN|J Chain J, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
Length = 82
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 7 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 65
Query: 61 QIKEGTKLNLVV 72
+I G+ L+LV+
Sbjct: 66 KILGGSVLHLVL 77
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 32 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 77
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 96 IQKEST-LHLVLR 107
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 50 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 107
>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 96 IQKEST-LHLVLR 107
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 50 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 107
>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 62
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 63 NIQRESTLHLVLR 75
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I+ + L+LV++
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQRESTLHLVLR 75
>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE-----ALKIPVSDQKLLATGRPLLDTKQ 55
M+I VK L G+ I L+V +I +K KI + AL IP Q+L+ G+ L D +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 56 ILDYPQIKEGTKLNLVVK 73
+ DY KE T L+LV++
Sbjct: 61 LSDYNIQKEST-LHLVLR 77
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 135 ALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
AL IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 38 ALAIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 77
>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN
Length = 114
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+I K L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYN 69
Query: 61 QIKEGTKLNLVVK 73
+E T L+LV++
Sbjct: 70 IQREST-LHLVLR 81
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY +E T L+LV++
Sbjct: 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQREST-LHLVLR 81
>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|B Chain B, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 81
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI 62
I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ D K DY +I
Sbjct: 8 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAADY-KI 66
Query: 63 KEGTKLNLVV 72
G+ L+LV+
Sbjct: 67 XGGSVLHLVL 76
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+K ++ E IP Q+L+ +G+ D K DY +I G+ L+LV+
Sbjct: 31 IKERVEEKEGIPPQQQRLIYSGKQXNDEKTAADY-KIXGGSVLHLVL 76
>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 76
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 59
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 60 NIQRESTLHLVLR 72
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I+ + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQRESTLHLVLR 72
>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I V L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 18 MQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 77
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 78 IQKEST-LHLVLR 89
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 110 NKIADEFIKVNSEMS--ILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEG 167
N ++ + I + E S I +K KI + IP Q+L+ G+ L D + + DY KE
Sbjct: 23 NTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 82
Query: 168 TKLNLVVK 175
T L+LV++
Sbjct: 83 T-LHLVLR 89
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++I VK L G+ I L+V +I +K KI + +IP Q+L+ G+ L D + + DY
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + +IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 85
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually
Exclusive Folding: Insertion Of Ubiquitin Into Position
103 Of Barnase
Length = 189
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 61
+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 107 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 166
Query: 62 IKEGTKLNLVVKRALKESSQS 82
KE T L+LV++ L+ Q+
Sbjct: 167 QKEST-LHLVLR--LRGGGQT 184
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 120 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR- 177
Query: 177 ALKESSQS 184
L+ Q+
Sbjct: 178 -LRGGGQT 184
>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|2FCM|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCM|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCN|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
pdb|2FCN|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
Length = 76
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|2FCQ|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
pdb|2FCQ|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
Length = 76
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|F Chain F, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDY- 59
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 60 NIQRESTLHLVLR 72
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G L D + + DY I+ + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDY-NIQRESTLHLVLR 72
>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I V L G I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 77
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 78 IQKEST-LHLVLR 89
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 32 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 89
>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + I Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|D Chain D, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 85
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|D Chain D, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1G6J|A Chain A, Structure Of Recombinant Human Ubiquitin In Aot Reverse
Micelles
Length = 76
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 61
+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 IKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 62 QKEST-LHLVLR 72
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
Domain In The Human Bat3 Protein
Length = 86
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK L Q V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 8 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY- 66
Query: 61 QIKEGTKLNLVVKRA 75
G K+ +V+RA
Sbjct: 67 --NVGGKVIHLVERA 79
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
FI V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y G K+ +V+
Sbjct: 22 FI-VGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY---NVGGKVIHLVE 77
Query: 176 RA 177
RA
Sbjct: 78 RA 79
>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
Length = 76
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T +LV++
Sbjct: 61 IQKESTX-HLVLR 72
>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant
Length = 77
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ L+V +I +K KI + + P Q+L+ G+ L D + + DY
Sbjct: 2 MQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 61 QIKEGT 66
KE T
Sbjct: 62 IQKEST 67
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGT 168
++V +I +K KI + + P Q+L+ G+ L D + + DY KE T
Sbjct: 16 LEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 67
>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6
pdb|4EEW|B Chain B, Crystal Structure Of The Ubl Domain Of Bag6
Length = 88
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
+++ VK L Q V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 119 VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 161
V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 34 VGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core
Mutant Of Ubiquitin, 1d7
Length = 76
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M++ +K L G+ + ++V ++ K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T ++LV++
Sbjct: 61 IQKEST-IHLVLR 72
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I+V ++ K KI + IP Q+L+ G+ L D + + DY KE T ++LV++
Sbjct: 15 IEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-IHLVLR 72
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M+I VK L G+ I L+V +I +K KI + IP QKLL + L D + + DY
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDY 61
>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural
Specificity
Length = 76
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M++ VK L G+ + +++ ++ LK KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T ++LV++
Sbjct: 61 LQKEST-IHLVLR 72
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 128 LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
LK KI + IP Q+L+ G+ L D + + DY KE T ++LV++
Sbjct: 26 LKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNLQKEST-IHLVLR 72
>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
pdb|4DWF|B Chain B, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
Length = 90
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK L Q V ++ ++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 6 LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY- 64
Query: 61 QIKEGTKLNLVVKRA 75
G K+ +V+RA
Sbjct: 65 --NVGGKVIHLVERA 77
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
FI V ++ ++ E K I ++ IP Q+L+ GR L D K++ +Y G K+ +V+
Sbjct: 20 FI-VGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY---NVGGKVIHLVE 75
Query: 176 RA 177
RA
Sbjct: 76 RA 77
>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|B Chain B, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|C Chain C, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|D Chain D, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBN|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
Length = 84
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE--------ALKIPVSDQKLLATGRPLLD 52
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 53 TKQILDYPQIKEGTKLNLVVK 73
+ + DY KE T L+LV++
Sbjct: 61 GRTLSDYNIQKEST-LHLVLR 80
>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant
Of Ubiquitin
Length = 88
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ +K L G+ +++ +I LK KI + IP Q+L+ G+ L D + + DY
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 70 IQKEST-LHLVLR 81
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 124 SILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I LK KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 31 TIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 81
>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|B Chain B, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|C Chain C, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|D Chain D, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
Length = 83
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 1 MKISVKVLQ-------GQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT 53
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D
Sbjct: 1 MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 54 KQILDYPQIKEGTKLNLVVK 73
+ + DY KE T L+LV++
Sbjct: 61 RTLSDYNIQKEST-LHLVLR 79
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 22 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 79
>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKI-NEALK--IPVSDQKLLATGRPLLDTKQIL 57
M++++K LQ Q +D++ E ++ LK KI +E K PV+ QKL+ G+ L D +
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 58 DY 59
+Y
Sbjct: 64 EY 65
>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKI-NEALK--IPVSDQKLLATGRPLLDTKQIL 57
M++++K LQ Q +D++ E ++ LK KI +E K PV+ QKL+ G+ L D +
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DY 59
+Y
Sbjct: 61 EY 62
>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin.
pdb|2GBJ|B Chain B, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72
I L+V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV+
Sbjct: 21 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVL 79
Query: 73 K 73
+
Sbjct: 80 R 80
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 23 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 80
>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 330
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 166 EGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSN--KIADEFIKEFN 223
EGT N+ + LK S+ G+ I+ +K Y+T+ Q N K +++F EF
Sbjct: 221 EGTLGNIFINVGLKIPSEXTICGTKGQIVIPNFWKTDCAYYTDAQGNTVKWSEQFTSEFT 280
Query: 224 KSI 226
I
Sbjct: 281 YEI 283
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 75 ALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKI 112
AL+ ++ S G N+ +LR + KFL +F + Q +K+
Sbjct: 103 ALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKM 140
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 177 ALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKI 214
AL+ ++ S G N+ +LR + KFL +F + Q +K+
Sbjct: 103 ALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKM 140
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 75 ALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKI 112
AL+ ++ S G N+ +LR + KFL +F + Q +K+
Sbjct: 95 ALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKM 132
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 177 ALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKI 214
AL+ ++ S G N+ +LR + KFL +F + Q +K+
Sbjct: 95 ALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKM 132
>pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALK----IPVSDQKLLATGRPLLDTKQILD 58
I++K LQ Q + + + ++ LK KI EA K PV+ QKL+ G+ L D I D
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKI-EAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 68
Query: 59 Y 59
Y
Sbjct: 69 Y 69
>pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALK----IPVSDQKLLATGRPLLDTKQILD 58
I++K LQ Q + + + ++ LK KI EA K PV+ QKL+ G+ L D I D
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKI-EAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 66
Query: 59 Y 59
Y
Sbjct: 67 Y 67
>pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALK----IPVSDQKLLATGRPLLDTKQILD 58
I++K LQ Q + + + ++ LK KI EA K PV+ QKL+ G+ L D I D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKI-EAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 63
Query: 59 Y 59
Y
Sbjct: 64 Y 64
>pdb|3M62|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
Length = 106
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI 62
++ K + +++ LD+ +ILE K K+ +++ S KL+ +G+ L D+K + + +
Sbjct: 4 LTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC-GL 62
Query: 63 KEGTKLNLVVKR 74
K+G ++ +V +
Sbjct: 63 KDGDQVVFMVSQ 74
>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger
Protein Np95
pdb|2FAZ|B Chain B, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger
Protein Np95
Length = 78
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 MKISVKVLQGQEIF-LDVNSEMS-ILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
M I V+ + G++ +D S ++ + EL+ KI E + Q+L G+ + D + D
Sbjct: 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62
Query: 59 YPQIKEGTKLNLVVKRA 75
Y +++ + L+V+++
Sbjct: 63 Y-EVRLNDTIQLLVRQS 78
>pdb|2KK1|A Chain A, Solution Structure Of C-Terminal Domain Of
Tyrosine-Protein Kinase Abl2 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr5537a
Length = 135
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLD 52
++I D S+ ++LE + ++ AL PV + +L+ TG LLD
Sbjct: 29 AEKISADKISKEALLECADLLSSALTEPVPNSQLVDTGHQLLD 71
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 100 LRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLD 154
LRK T+ + KI+ + I S+ ++LE + ++ AL PV + +L+ TG LLD
Sbjct: 22 LRK--TKQAAEKISADKI---SKEALLECADLLSSALTEPVPNSQLVDTGHQLLD 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,852,915
Number of Sequences: 62578
Number of extensions: 212305
Number of successful extensions: 778
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 214
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)