Query psy1973
Match_columns 252
No_of_seqs 323 out of 2067
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:58:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01807 GDX_N ubiquitin-like d 99.8 6.3E-19 1.4E-23 124.3 9.1 73 1-74 1-73 (74)
2 cd01797 NIRF_N amino-terminal 99.7 5.9E-18 1.3E-22 120.4 8.6 73 1-74 1-75 (78)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 1.1E-17 2.3E-22 118.0 8.7 71 1-74 1-71 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 1.5E-17 3.3E-22 117.7 9.2 73 1-74 1-73 (76)
5 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.4E-17 3E-22 116.8 8.2 71 1-72 2-72 (73)
6 cd01802 AN1_N ubiquitin-like d 99.7 3.1E-18 6.8E-23 128.0 4.8 92 58-176 9-100 (103)
7 cd01805 RAD23_N Ubiquitin-like 99.7 4.4E-17 9.6E-22 115.5 9.6 73 1-74 1-75 (77)
8 cd01802 AN1_N ubiquitin-like d 99.7 3E-17 6.5E-22 122.7 8.9 73 1-74 28-100 (103)
9 cd01794 DC_UbP_C dendritic cel 99.7 4.6E-17 1E-21 113.4 7.6 69 3-72 1-69 (70)
10 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.1E-16 2.3E-21 113.1 9.6 72 1-73 1-72 (76)
11 cd01809 Scythe_N Ubiquitin-lik 99.7 9.9E-17 2.1E-21 112.1 9.1 72 1-73 1-72 (72)
12 cd01803 Ubiquitin Ubiquitin. U 99.7 9.1E-17 2E-21 113.4 9.0 73 1-74 1-73 (76)
13 cd01804 midnolin_N Ubiquitin-l 99.7 7.8E-17 1.7E-21 114.7 8.6 71 1-73 2-72 (78)
14 cd01798 parkin_N amino-termina 99.7 6.3E-17 1.4E-21 112.8 7.9 70 3-73 1-70 (70)
15 cd01810 ISG15_repeat2 ISG15 ub 99.7 8.3E-17 1.8E-21 113.4 8.1 71 3-74 1-71 (74)
16 cd01807 GDX_N ubiquitin-like d 99.7 9.5E-18 2.1E-22 118.2 2.4 72 97-176 2-73 (74)
17 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.4E-16 3.1E-21 113.9 7.9 73 1-74 3-77 (80)
18 cd01793 Fubi Fubi ubiquitin-li 99.7 3.2E-17 6.9E-22 115.5 2.7 61 115-176 11-71 (74)
19 cd01808 hPLIC_N Ubiquitin-like 99.7 5.5E-16 1.2E-20 108.3 8.5 71 1-73 1-71 (71)
20 cd01797 NIRF_N amino-terminal 99.7 4.6E-17 9.9E-22 115.8 2.5 74 96-176 1-75 (78)
21 PF00240 ubiquitin: Ubiquitin 99.6 9.1E-16 2E-20 106.4 8.7 68 6-74 1-68 (69)
22 KOG0005|consensus 99.6 2.6E-16 5.7E-21 102.4 4.5 70 1-71 1-70 (70)
23 cd01796 DDI1_N DNA damage indu 99.6 1.4E-15 3.1E-20 106.2 7.7 68 3-71 1-70 (71)
24 cd01798 parkin_N amino-termina 99.6 2.2E-16 4.8E-21 110.0 3.5 64 109-175 7-70 (70)
25 cd01810 ISG15_repeat2 ISG15 ub 99.6 3.8E-16 8.2E-21 110.0 3.9 65 109-176 7-71 (74)
26 PTZ00044 ubiquitin; Provisiona 99.6 1.9E-16 4.2E-21 112.0 2.3 73 96-176 1-73 (76)
27 cd01813 UBP_N UBP ubiquitin pr 99.6 2.9E-15 6.4E-20 105.4 8.2 70 1-72 1-73 (74)
28 cd01794 DC_UbP_C dendritic cel 99.6 1.3E-15 2.7E-20 106.1 5.5 63 109-174 7-69 (70)
29 cd01812 BAG1_N Ubiquitin-like 99.6 5.5E-15 1.2E-19 103.0 8.0 70 1-72 1-70 (71)
30 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 4.4E-16 9.4E-21 109.2 1.9 63 109-174 10-72 (73)
31 cd01790 Herp_N Homocysteine-re 99.6 5E-15 1.1E-19 104.7 7.2 71 1-72 2-78 (79)
32 cd01805 RAD23_N Ubiquitin-like 99.6 1.3E-15 2.9E-20 107.9 2.8 72 97-176 2-75 (77)
33 KOG0003|consensus 99.6 3.2E-16 6.9E-21 114.1 -0.4 73 1-74 1-73 (128)
34 KOG0003|consensus 99.6 6.5E-17 1.4E-21 117.7 -4.0 72 97-176 2-73 (128)
35 cd01800 SF3a120_C Ubiquitin-li 99.6 1.1E-14 2.5E-19 103.0 7.4 66 8-74 5-70 (76)
36 KOG0005|consensus 99.5 6.2E-16 1.3E-20 100.7 -0.1 62 109-173 9-70 (70)
37 KOG0004|consensus 99.5 3.1E-15 6.8E-20 116.6 3.4 73 96-176 1-73 (156)
38 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.9E-15 4.2E-20 108.0 1.8 73 96-176 3-77 (80)
39 PF00240 ubiquitin: Ubiquitin 99.5 1.2E-14 2.6E-19 100.8 5.7 65 109-176 4-68 (69)
40 cd01809 Scythe_N Ubiquitin-lik 99.5 2.3E-15 5E-20 105.1 2.0 64 109-175 9-72 (72)
41 cd01808 hPLIC_N Ubiquitin-like 99.5 2.5E-15 5.3E-20 105.0 2.0 59 116-175 13-71 (71)
42 cd01806 Nedd8 Nebb8-like ubiq 99.5 3.3E-15 7.2E-20 105.4 2.7 65 109-176 9-73 (76)
43 cd01803 Ubiquitin Ubiquitin. U 99.5 3.1E-15 6.8E-20 105.5 2.5 65 109-176 9-73 (76)
44 KOG0004|consensus 99.5 6.1E-15 1.3E-19 115.0 4.2 73 1-74 1-73 (156)
45 cd01804 midnolin_N Ubiquitin-l 99.5 3.5E-15 7.5E-20 106.2 2.2 64 109-176 10-73 (78)
46 cd01800 SF3a120_C Ubiquitin-li 99.5 2.3E-14 4.9E-19 101.5 5.7 65 109-176 6-70 (76)
47 cd01763 Sumo Small ubiquitin-r 99.5 1.6E-13 3.4E-18 99.7 9.3 72 1-73 12-83 (87)
48 smart00213 UBQ Ubiquitin homol 99.5 1.1E-13 2.4E-18 94.0 7.5 64 1-66 1-64 (64)
49 TIGR00601 rad23 UV excision re 99.5 9.2E-14 2E-18 125.8 9.1 74 1-75 1-77 (378)
50 cd01796 DDI1_N DNA damage indu 99.5 5.7E-14 1.2E-18 98.1 5.3 62 109-173 8-70 (71)
51 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 5.3E-14 1.1E-18 98.2 4.6 54 121-175 19-75 (75)
52 cd01790 Herp_N Homocysteine-re 99.4 2.1E-14 4.6E-19 101.5 1.4 65 109-174 10-78 (79)
53 cd01799 Hoil1_N Ubiquitin-like 99.4 4.5E-13 9.7E-18 94.4 7.1 65 6-72 8-74 (75)
54 TIGR00601 rad23 UV excision re 99.4 5E-13 1.1E-17 121.0 7.2 74 96-177 1-77 (378)
55 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 6.9E-13 1.5E-17 92.6 5.3 53 19-72 19-74 (75)
56 cd01813 UBP_N UBP ubiquitin pr 99.4 6.8E-13 1.5E-17 93.3 5.0 63 109-174 8-73 (74)
57 cd01812 BAG1_N Ubiquitin-like 99.4 1E-12 2.2E-17 91.5 4.9 62 110-174 9-70 (71)
58 cd01799 Hoil1_N Ubiquitin-like 99.3 2.3E-12 4.9E-17 90.8 5.0 62 109-174 11-74 (75)
59 cd01769 UBL Ubiquitin-like dom 99.3 8.3E-12 1.8E-16 85.9 7.8 68 4-72 1-68 (69)
60 KOG0011|consensus 99.3 6.5E-12 1.4E-16 109.2 7.4 74 1-75 1-76 (340)
61 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.8E-11 3.9E-16 85.5 7.7 71 1-72 1-72 (72)
62 KOG0010|consensus 99.3 5.8E-12 1.3E-16 114.8 6.5 73 1-75 16-88 (493)
63 cd01814 NTGP5 Ubiquitin-like N 99.3 4.7E-12 1E-16 94.3 4.7 61 116-177 19-92 (113)
64 cd01763 Sumo Small ubiquitin-r 99.3 3E-12 6.6E-17 92.9 3.0 74 95-176 11-84 (87)
65 cd01814 NTGP5 Ubiquitin-like N 99.2 1E-11 2.3E-16 92.5 5.0 73 2-75 6-92 (113)
66 cd01795 USP48_C USP ubiquitin- 99.2 3.1E-11 6.7E-16 87.5 7.1 60 13-73 17-77 (107)
67 cd01795 USP48_C USP ubiquitin- 99.2 1.9E-11 4.1E-16 88.6 5.5 61 115-176 17-78 (107)
68 KOG0011|consensus 99.2 9.2E-11 2E-15 102.1 7.6 74 96-177 1-76 (340)
69 KOG0010|consensus 99.1 1E-10 2.2E-15 106.8 5.7 62 115-177 27-88 (493)
70 smart00213 UBQ Ubiquitin homol 99.1 9.7E-11 2.1E-15 79.3 4.2 53 115-168 12-64 (64)
71 cd01769 UBL Ubiquitin-like dom 99.1 2.5E-10 5.4E-15 78.4 5.8 63 109-174 6-68 (69)
72 cd01789 Alp11_N Ubiquitin-like 99.0 3.4E-09 7.4E-14 76.3 8.6 71 2-73 3-81 (84)
73 KOG0001|consensus 98.9 2E-08 4.4E-13 69.0 8.9 71 3-74 2-72 (75)
74 cd01788 ElonginB Ubiquitin-lik 98.9 9.3E-09 2E-13 76.5 7.2 73 1-74 1-81 (119)
75 PLN02560 enoyl-CoA reductase 98.8 1.1E-08 2.3E-13 90.8 8.4 70 1-71 1-81 (308)
76 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.8E-08 6E-13 72.0 8.1 71 2-73 3-83 (87)
77 cd01789 Alp11_N Ubiquitin-like 98.8 1.2E-08 2.6E-13 73.5 6.0 60 116-176 16-82 (84)
78 KOG0001|consensus 98.7 5.9E-08 1.3E-12 66.6 6.8 65 109-176 8-72 (75)
79 KOG4248|consensus 98.7 2.8E-08 6.2E-13 97.4 6.4 72 2-75 4-75 (1143)
80 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.6E-07 3.6E-12 70.9 9.0 72 2-74 4-89 (111)
81 PF11976 Rad60-SLD: Ubiquitin- 98.7 2.3E-08 5E-13 69.6 3.7 63 109-174 9-72 (72)
82 cd01788 ElonginB Ubiquitin-lik 98.6 5.1E-08 1.1E-12 72.5 5.0 61 115-176 14-81 (119)
83 cd01801 Tsc13_N Ubiquitin-like 98.6 1.6E-07 3.4E-12 66.4 6.8 68 2-70 2-74 (77)
84 PF13881 Rad60-SLD_2: Ubiquiti 98.5 4.9E-07 1.1E-11 68.3 7.3 66 109-177 11-90 (111)
85 PF14560 Ubiquitin_2: Ubiquiti 98.5 1.9E-07 4.1E-12 67.6 4.0 61 115-176 16-84 (87)
86 PF11543 UN_NPL4: Nuclear pore 98.4 5.4E-07 1.2E-11 64.1 5.5 69 1-71 5-78 (80)
87 cd00196 UBQ Ubiquitin-like pro 98.4 1.9E-06 4.1E-11 56.3 7.9 67 5-72 2-68 (69)
88 KOG4248|consensus 98.4 2.9E-07 6.2E-12 90.6 3.7 71 98-177 5-75 (1143)
89 cd01811 OASL_repeat1 2'-5' oli 98.3 5.3E-06 1.1E-10 57.0 7.6 71 1-73 1-76 (80)
90 PLN02560 enoyl-CoA reductase 98.3 4.3E-07 9.3E-12 80.6 2.5 57 116-173 17-81 (308)
91 cd01801 Tsc13_N Ubiquitin-like 98.2 1.8E-06 3.9E-11 61.0 4.6 52 120-172 20-74 (77)
92 KOG0006|consensus 98.2 3.5E-06 7.6E-11 73.3 6.9 75 1-76 1-79 (446)
93 KOG1872|consensus 98.2 5.2E-06 1.1E-10 75.9 7.1 71 2-74 5-76 (473)
94 KOG3493|consensus 98.0 1.9E-06 4.1E-11 57.4 1.6 69 2-71 3-71 (73)
95 cd00196 UBQ Ubiquitin-like pro 98.0 1.4E-05 3E-10 52.1 5.5 59 115-174 10-68 (69)
96 KOG1769|consensus 98.0 6.7E-05 1.5E-09 54.7 8.5 71 2-73 22-92 (99)
97 KOG0006|consensus 97.8 1.5E-05 3.3E-10 69.4 3.6 66 110-176 11-77 (446)
98 PF11543 UN_NPL4: Nuclear pore 97.8 2E-05 4.3E-10 56.1 3.3 58 115-173 16-78 (80)
99 KOG4495|consensus 97.7 4.9E-05 1.1E-09 54.8 4.4 62 1-63 1-65 (110)
100 KOG4495|consensus 97.4 3.6E-05 7.8E-10 55.5 0.4 49 115-164 14-64 (110)
101 PF11470 TUG-UBL1: GLUT4 regul 97.4 0.00071 1.5E-08 46.1 6.3 63 7-70 3-65 (65)
102 KOG3493|consensus 97.4 4.4E-05 9.5E-10 51.0 0.1 62 109-173 10-71 (73)
103 KOG1872|consensus 97.3 0.00069 1.5E-08 62.3 6.9 61 115-176 15-76 (473)
104 PF08817 YukD: WXG100 protein 97.3 0.00088 1.9E-08 47.4 6.0 68 2-70 4-78 (79)
105 PF10302 DUF2407: DUF2407 ubiq 97.1 0.0018 3.8E-08 47.8 5.8 57 3-59 3-64 (97)
106 PF00789 UBX: UBX domain; Int 97.0 0.0074 1.6E-07 42.7 8.8 69 2-71 8-81 (82)
107 cd01811 OASL_repeat1 2'-5' oli 97.0 0.0018 3.9E-08 44.7 5.0 60 115-176 13-77 (80)
108 COG5227 SMT3 Ubiquitin-like pr 97.0 0.0041 8.9E-08 44.5 6.7 69 2-71 26-94 (103)
109 PF15044 CLU_N: Mitochondrial 96.9 0.0053 1.1E-07 43.2 6.9 58 119-176 1-59 (76)
110 PF11470 TUG-UBL1: GLUT4 regul 96.8 0.0022 4.8E-08 43.7 4.0 57 115-172 9-65 (65)
111 smart00166 UBX Domain present 96.8 0.012 2.6E-07 41.6 7.9 68 2-70 6-78 (80)
112 PF13019 Telomere_Sde2: Telome 96.7 0.014 3E-07 46.8 8.6 59 1-59 1-67 (162)
113 KOG0013|consensus 96.6 0.0036 7.8E-08 51.8 5.1 64 9-73 155-218 (231)
114 cd01767 UBX UBX (ubiquitin reg 96.4 0.033 7.2E-07 38.9 8.4 66 2-70 4-74 (77)
115 cd01772 SAKS1_UBX SAKS1-like U 96.4 0.032 6.9E-07 39.4 8.1 67 2-70 6-77 (79)
116 cd01770 p47_UBX p47-like ubiqu 96.2 0.041 8.8E-07 38.9 7.8 66 2-69 6-75 (79)
117 KOG0013|consensus 96.1 0.0085 1.8E-07 49.7 4.3 64 109-175 155-218 (231)
118 KOG1639|consensus 96.1 0.014 3E-07 49.7 5.6 69 1-70 1-76 (297)
119 PF10302 DUF2407: DUF2407 ubiq 96.0 0.0087 1.9E-07 44.1 3.6 46 116-161 15-64 (97)
120 cd01773 Faf1_like1_UBX Faf1 ik 96.0 0.08 1.7E-06 37.7 8.3 69 2-72 7-80 (82)
121 KOG1769|consensus 95.8 0.034 7.3E-07 40.7 6.1 65 109-176 29-93 (99)
122 PF15044 CLU_N: Mitochondrial 95.8 0.018 3.9E-07 40.4 4.6 58 17-74 1-59 (76)
123 COG5417 Uncharacterized small 95.6 0.088 1.9E-06 36.4 7.1 65 5-70 11-80 (81)
124 cd01774 Faf1_like2_UBX Faf1 ik 95.5 0.16 3.4E-06 36.5 8.4 68 2-71 6-83 (85)
125 cd01771 Faf1_UBX Faf1 UBX doma 95.3 0.18 4E-06 35.7 8.1 68 2-71 6-78 (80)
126 KOG3206|consensus 95.2 0.076 1.6E-06 44.0 6.7 59 14-73 16-81 (234)
127 PF09379 FERM_N: FERM N-termin 94.1 0.47 1E-05 33.0 7.9 67 5-72 1-76 (80)
128 PF08817 YukD: WXG100 protein 94.1 0.039 8.4E-07 38.9 2.2 58 115-173 15-79 (79)
129 PRK06437 hypothetical protein; 93.4 0.82 1.8E-05 31.1 7.9 62 1-72 1-62 (67)
130 PF11620 GABP-alpha: GA-bindin 93.1 0.35 7.6E-06 34.4 5.6 60 13-73 5-64 (88)
131 PF14533 USP7_C2: Ubiquitin-sp 93.0 0.31 6.7E-06 41.1 6.3 135 12-161 35-193 (213)
132 KOG3206|consensus 92.7 1.6 3.4E-05 36.5 9.7 60 116-176 16-82 (234)
133 PF00789 UBX: UBX domain; Int 92.0 0.38 8.3E-06 33.8 4.8 62 109-173 15-81 (82)
134 cd06409 PB1_MUG70 The MUG70 pr 91.9 0.71 1.5E-05 33.2 6.1 38 2-39 2-39 (86)
135 cd06406 PB1_P67 A PB1 domain i 91.7 0.7 1.5E-05 32.7 5.8 37 12-48 12-48 (80)
136 PF11069 DUF2870: Protein of u 91.2 0.76 1.6E-05 33.6 5.7 34 144-179 3-36 (98)
137 PF14453 ThiS-like: ThiS-like 91.0 1.1 2.4E-05 29.5 5.8 55 1-72 1-55 (57)
138 smart00166 UBX Domain present 90.8 0.79 1.7E-05 32.1 5.5 61 109-172 13-78 (80)
139 PRK05659 sulfur carrier protei 89.5 2.4 5.2E-05 28.3 6.8 61 1-72 1-61 (66)
140 cd06407 PB1_NLP A PB1 domain i 89.5 2.2 4.8E-05 30.3 6.8 45 1-46 1-46 (82)
141 PRK08364 sulfur carrier protei 89.3 3.7 8.1E-05 28.0 7.7 51 12-72 15-65 (70)
142 cd01760 RBD Ubiquitin-like dom 89.0 3.1 6.8E-05 28.8 7.1 45 3-47 2-46 (72)
143 smart00666 PB1 PB1 domain. Pho 89.0 2.5 5.5E-05 29.3 6.9 44 2-46 3-46 (81)
144 PF11620 GABP-alpha: GA-bindin 88.9 0.85 1.9E-05 32.5 4.2 60 116-176 6-65 (88)
145 smart00455 RBD Raf-like Ras-bi 88.9 3.6 7.9E-05 28.2 7.4 52 3-54 2-55 (70)
146 PF12436 USP7_ICP0_bdg: ICP0-b 88.5 1.1 2.4E-05 38.6 5.7 136 3-147 71-224 (249)
147 PF13019 Telomere_Sde2: Telome 88.4 0.5 1.1E-05 38.0 3.2 61 115-176 17-85 (162)
148 COG5227 SMT3 Ubiquitin-like pr 88.3 0.89 1.9E-05 32.7 4.0 62 109-173 33-94 (103)
149 COG5417 Uncharacterized small 88.2 1.4 3E-05 30.6 4.8 57 115-172 19-80 (81)
150 PF14836 Ubiquitin_3: Ubiquiti 88.1 4.4 9.5E-05 29.2 7.5 60 12-73 15-80 (88)
151 cd01772 SAKS1_UBX SAKS1-like U 87.7 1.9 4.1E-05 30.3 5.5 60 109-172 13-77 (79)
152 KOG0012|consensus 87.3 1 2.2E-05 40.5 4.8 72 1-73 1-76 (380)
153 PRK06488 sulfur carrier protei 87.0 4.7 0.0001 26.9 7.0 60 1-72 1-60 (65)
154 KOG4583|consensus 86.9 0.29 6.3E-06 43.6 1.1 58 2-59 11-72 (391)
155 PF10790 DUF2604: Protein of U 86.3 3.6 7.8E-05 27.7 5.8 65 8-73 3-71 (76)
156 PLN02799 Molybdopterin synthas 86.3 4.1 9E-05 28.5 6.7 66 1-72 2-77 (82)
157 KOG4583|consensus 85.9 0.23 4.9E-06 44.2 -0.1 47 115-161 24-72 (391)
158 KOG1639|consensus 85.7 0.89 1.9E-05 39.0 3.4 56 116-172 16-76 (297)
159 cd01767 UBX UBX (ubiquitin reg 85.4 3.3 7.1E-05 28.7 5.7 59 109-172 11-74 (77)
160 PF12754 Blt1: Cell-cycle cont 85.3 0.26 5.7E-06 43.5 0.0 57 3-59 81-157 (309)
161 cd00754 MoaD Ubiquitin domain 85.0 6.1 0.00013 27.2 7.0 55 12-72 17-75 (80)
162 cd06408 PB1_NoxR The PB1 domai 84.7 7.3 0.00016 28.0 7.2 44 3-47 3-47 (86)
163 cd01770 p47_UBX p47-like ubiqu 84.5 2.7 5.9E-05 29.5 4.9 59 109-170 13-75 (79)
164 KOG4250|consensus 84.4 4.6 0.0001 39.7 7.9 42 115-156 327-368 (732)
165 smart00295 B41 Band 4.1 homolo 84.1 11 0.00024 30.6 9.4 71 2-73 5-83 (207)
166 PF02196 RBD: Raf-like Ras-bin 84.0 11 0.00025 25.8 9.0 57 3-59 3-61 (71)
167 PRK06944 sulfur carrier protei 83.4 11 0.00023 25.0 7.4 60 1-72 1-60 (65)
168 cd01774 Faf1_like2_UBX Faf1 ik 82.3 5 0.00011 28.6 5.6 61 109-173 13-83 (85)
169 cd05992 PB1 The PB1 domain is 82.0 7.5 0.00016 26.8 6.5 44 2-46 2-46 (81)
170 KOG2982|consensus 81.7 1.9 4.1E-05 38.5 3.8 55 16-71 353-415 (418)
171 PRK08053 sulfur carrier protei 80.4 15 0.00032 24.6 7.3 61 1-72 1-61 (66)
172 cd06406 PB1_P67 A PB1 domain i 80.4 3.6 7.8E-05 29.1 4.2 36 115-150 13-48 (80)
173 PF00564 PB1: PB1 domain; Int 79.5 8.2 0.00018 26.8 6.0 44 2-46 3-47 (84)
174 PF14453 ThiS-like: ThiS-like 79.3 11 0.00023 24.9 5.9 48 116-175 9-56 (57)
175 cd00754 MoaD Ubiquitin domain 78.8 8 0.00017 26.5 5.7 54 115-174 18-75 (80)
176 PF14836 Ubiquitin_3: Ubiquiti 78.4 7.6 0.00016 28.0 5.4 60 115-176 16-81 (88)
177 cd01773 Faf1_like1_UBX Faf1 ik 78.1 8.8 0.00019 27.3 5.7 62 109-174 14-80 (82)
178 PRK06437 hypothetical protein; 77.9 13 0.00028 25.2 6.3 49 116-174 14-62 (67)
179 PRK05863 sulfur carrier protei 77.8 14 0.00031 24.6 6.5 60 1-72 1-60 (65)
180 PRK07696 sulfur carrier protei 77.6 18 0.00038 24.4 6.9 61 1-72 1-62 (67)
181 PF08337 Plexin_cytopl: Plexin 77.0 2.6 5.6E-05 40.4 3.5 61 115-176 204-290 (539)
182 cd00565 ThiS ThiaminS ubiquiti 76.9 14 0.0003 24.6 6.2 56 9-72 5-60 (65)
183 PF12754 Blt1: Cell-cycle cont 76.8 0.79 1.7E-05 40.6 0.0 40 122-161 103-157 (309)
184 PRK07440 hypothetical protein; 76.6 17 0.00038 24.7 6.7 56 9-72 10-65 (70)
185 KOG4250|consensus 76.1 7.2 0.00016 38.4 6.2 44 7-50 321-364 (732)
186 COG2104 ThiS Sulfur transfer p 74.7 24 0.00052 24.0 7.5 63 1-72 1-63 (68)
187 PF02017 CIDE-N: CIDE-N domain 74.5 14 0.0003 26.0 5.8 50 21-74 21-72 (78)
188 smart00455 RBD Raf-like Ras-bi 74.0 10 0.00022 25.9 5.0 39 109-149 8-46 (70)
189 PF11069 DUF2870: Protein of u 73.5 8.1 0.00018 28.3 4.5 33 42-74 3-35 (98)
190 PRK06083 sulfur carrier protei 73.1 21 0.00045 25.4 6.5 56 9-72 24-79 (84)
191 PTZ00380 microtubule-associate 72.7 7 0.00015 29.9 4.2 59 15-73 45-105 (121)
192 cd06411 PB1_p51 The PB1 domain 72.6 9.7 0.00021 26.8 4.6 37 11-47 7-43 (78)
193 cd01760 RBD Ubiquitin-like dom 72.5 8.8 0.00019 26.5 4.4 40 109-150 8-47 (72)
194 cd00565 ThiS ThiaminS ubiquiti 72.3 16 0.00035 24.2 5.7 53 116-174 8-60 (65)
195 PF14261 DUF4351: Domain of un 71.8 5.3 0.00012 26.4 3.0 27 219-245 24-50 (59)
196 TIGR01683 thiS thiamine biosyn 70.9 23 0.00049 23.5 6.1 56 9-72 4-59 (64)
197 cd06396 PB1_NBR1 The PB1 domai 70.3 29 0.00063 24.6 6.6 35 2-37 2-38 (81)
198 TIGR02958 sec_mycoba_snm4 secr 70.0 25 0.00054 33.2 8.2 70 2-73 4-80 (452)
199 KOG2086|consensus 69.7 12 0.00026 34.2 5.7 63 2-65 307-373 (380)
200 KOG2689|consensus 68.5 15 0.00033 32.0 5.8 69 2-71 212-285 (290)
201 TIGR01687 moaD_arch MoaD famil 68.4 37 0.00081 23.8 7.2 56 12-72 17-83 (88)
202 cd01771 Faf1_UBX Faf1 UBX doma 68.4 23 0.00049 24.9 5.9 61 109-173 13-78 (80)
203 cd06398 PB1_Joka2 The PB1 doma 67.6 36 0.00078 24.6 6.9 44 2-46 2-51 (91)
204 PF10790 DUF2604: Protein of U 67.0 20 0.00043 24.2 4.9 60 116-176 9-72 (76)
205 KOG0012|consensus 66.8 4.8 0.0001 36.4 2.6 61 115-176 15-77 (380)
206 PF07499 RuvA_C: RuvA, C-termi 66.6 27 0.0006 21.7 5.4 44 194-242 3-46 (47)
207 TIGR01682 moaD molybdopterin c 66.3 40 0.00087 23.2 7.6 54 13-72 18-75 (80)
208 PF09379 FERM_N: FERM N-termin 66.2 14 0.0003 25.3 4.5 63 109-174 5-76 (80)
209 cd06410 PB1_UP2 Uncharacterize 65.9 30 0.00064 25.4 6.2 40 5-45 17-56 (97)
210 cd06409 PB1_MUG70 The MUG70 pr 65.7 9.7 0.00021 27.3 3.5 37 109-147 9-48 (86)
211 smart00266 CAD Domains present 64.8 18 0.0004 25.1 4.6 56 13-73 12-69 (74)
212 PF10407 Cytokin_check_N: Cdc1 64.6 28 0.0006 24.2 5.5 61 11-73 3-70 (73)
213 PRK08364 sulfur carrier protei 63.3 44 0.00095 22.6 6.6 50 115-174 16-65 (70)
214 TIGR01683 thiS thiamine biosyn 63.1 33 0.00071 22.7 5.6 53 116-174 7-59 (64)
215 PF10209 DUF2340: Uncharacteri 62.9 15 0.00031 28.2 4.2 57 16-73 21-108 (122)
216 PRK11840 bifunctional sulfur c 61.9 35 0.00076 30.7 7.1 62 1-73 1-62 (326)
217 PRK05659 sulfur carrier protei 61.9 32 0.00069 22.7 5.5 53 116-174 9-61 (66)
218 PF08337 Plexin_cytopl: Plexin 61.8 24 0.00052 34.0 6.4 63 11-74 202-290 (539)
219 PF02597 ThiS: ThiS family; I 61.6 31 0.00067 23.3 5.5 58 12-72 13-72 (77)
220 KOG3439|consensus 61.6 29 0.00063 26.1 5.4 38 13-50 47-84 (116)
221 PF14533 USP7_C2: Ubiquitin-sp 61.0 8.5 0.00018 32.4 3.0 29 10-38 132-160 (213)
222 smart00144 PI3K_rbd PI3-kinase 60.5 58 0.0013 24.2 7.1 63 11-73 29-104 (108)
223 PF14451 Ub-Mut7C: Mut7-C ubiq 60.0 51 0.0011 23.3 6.4 54 10-73 22-76 (81)
224 cd01615 CIDE_N CIDE_N domain, 59.8 23 0.00049 24.9 4.4 55 14-73 15-71 (78)
225 cd01817 RGS12_RBD Ubiquitin do 59.4 40 0.00087 23.4 5.5 61 109-175 8-70 (73)
226 cd01818 TIAM1_RBD Ubiquitin do 59.1 43 0.00093 23.4 5.6 40 4-43 3-42 (77)
227 cd01787 GRB7_RA RA (RAS-associ 56.7 44 0.00096 23.9 5.5 38 3-40 5-42 (85)
228 PF02991 Atg8: Autophagy prote 56.5 29 0.00063 25.8 4.8 60 14-73 36-98 (104)
229 cd06397 PB1_UP1 Uncharacterize 55.7 61 0.0013 22.9 6.0 43 2-45 2-44 (82)
230 cd06539 CIDE_N_A CIDE_N domain 55.6 32 0.00068 24.2 4.6 49 21-73 21-71 (78)
231 cd01768 RA RA (Ras-associating 55.5 58 0.0012 22.7 6.2 35 10-44 12-48 (87)
232 KOG0007|consensus 54.1 6 0.00013 35.8 1.0 50 108-158 290-339 (341)
233 cd06536 CIDE_N_ICAD CIDE_N dom 53.9 31 0.00067 24.4 4.3 55 14-73 15-73 (80)
234 cd01611 GABARAP Ubiquitin doma 53.7 26 0.00057 26.4 4.3 58 14-73 44-106 (112)
235 TIGR01682 moaD molybdopterin c 52.0 75 0.0016 21.8 6.3 54 115-174 18-75 (80)
236 PF00788 RA: Ras association ( 52.0 70 0.0015 22.2 6.2 42 3-44 5-52 (93)
237 PF00276 Ribosomal_L23: Riboso 51.7 34 0.00074 24.6 4.5 41 11-51 21-62 (91)
238 PF02017 CIDE-N: CIDE-N domain 51.3 32 0.0007 24.2 4.1 51 122-176 20-72 (78)
239 cd06411 PB1_p51 The PB1 domain 50.8 23 0.00051 24.9 3.3 35 115-149 9-43 (78)
240 PF02196 RBD: Raf-like Ras-bin 50.3 63 0.0014 22.0 5.4 51 109-161 9-61 (71)
241 PF02505 MCR_D: Methyl-coenzym 50.2 37 0.00081 27.0 4.7 47 13-65 77-124 (153)
242 cd01817 RGS12_RBD Ubiquitin do 49.1 88 0.0019 21.7 7.9 44 5-48 4-47 (73)
243 cd06538 CIDE_N_FSP27 CIDE_N do 49.0 43 0.00094 23.6 4.4 57 13-74 14-71 (79)
244 PRK05738 rplW 50S ribosomal pr 48.6 56 0.0012 23.6 5.2 40 10-49 20-60 (92)
245 cd01777 SNX27_RA Ubiquitin dom 48.0 60 0.0013 23.3 5.1 41 2-42 3-43 (87)
246 TIGR01687 moaD_arch MoaD famil 47.7 73 0.0016 22.2 5.7 55 115-174 18-83 (88)
247 KOG4572|consensus 47.3 30 0.00066 34.9 4.6 62 9-71 3-68 (1424)
248 PF14732 UAE_UbL: Ubiquitin/SU 46.4 61 0.0013 23.1 5.0 51 122-173 8-67 (87)
249 cd06537 CIDE_N_B CIDE_N domain 45.7 50 0.0011 23.4 4.3 49 21-73 21-70 (81)
250 KOG2982|consensus 45.6 35 0.00076 30.7 4.3 55 117-172 352-414 (418)
251 COG2104 ThiS Sulfur transfer p 44.3 1E+02 0.0022 21.0 5.6 53 116-174 11-63 (68)
252 PRK06944 sulfur carrier protei 43.2 92 0.002 20.3 6.3 52 116-174 9-60 (65)
253 TIGR03260 met_CoM_red_D methyl 43.2 53 0.0012 26.0 4.6 47 13-65 76-122 (150)
254 TIGR03636 L23_arch archaeal ri 42.7 55 0.0012 22.9 4.2 33 11-43 15-47 (77)
255 TIGR02958 sec_mycoba_snm4 secr 42.5 1.5E+02 0.0033 28.0 8.4 60 116-176 15-81 (452)
256 PF00794 PI3K_rbd: PI3-kinase 41.9 1.3E+02 0.0028 22.0 6.4 72 2-73 18-102 (106)
257 KOG4572|consensus 40.8 28 0.0006 35.2 3.2 65 109-175 3-70 (1424)
258 COG5100 NPL4 Nuclear pore prot 40.4 1.2E+02 0.0026 28.2 6.9 72 1-74 1-80 (571)
259 KOG4598|consensus 40.3 67 0.0015 32.1 5.7 60 12-74 878-943 (1203)
260 KOG2561|consensus 39.9 25 0.00054 33.0 2.6 58 15-73 54-111 (568)
261 smart00266 CAD Domains present 39.4 62 0.0013 22.5 4.0 51 122-176 18-70 (74)
262 PRK14548 50S ribosomal protein 38.7 71 0.0015 22.8 4.3 34 10-43 21-54 (84)
263 PF08783 DWNN: DWNN domain; I 38.6 1.1E+02 0.0023 21.3 5.1 40 4-43 2-44 (74)
264 KOG2507|consensus 38.5 45 0.00098 31.1 4.0 72 2-74 316-392 (506)
265 PTZ00380 microtubule-associate 38.5 27 0.0006 26.7 2.3 58 118-176 46-106 (121)
266 cd06407 PB1_NLP A PB1 domain i 38.2 50 0.0011 23.3 3.5 36 115-150 12-48 (82)
267 PF00627 UBA: UBA/TS-N domain; 38.2 30 0.00065 20.1 2.0 30 196-225 4-33 (37)
268 PRK05910 type III secretion sy 37.9 2.5E+02 0.0053 27.5 9.0 103 122-247 334-442 (584)
269 smart00314 RA Ras association 37.9 1.4E+02 0.003 20.8 6.5 34 10-43 15-50 (90)
270 PF10440 WIYLD: Ubiquitin-bind 37.1 73 0.0016 21.6 3.9 53 194-246 11-63 (65)
271 cd01782 AF6_RA_repeat1 Ubiquit 36.9 1.7E+02 0.0038 21.9 6.2 37 1-37 24-62 (112)
272 PRK06083 sulfur carrier protei 36.4 1.2E+02 0.0026 21.5 5.2 53 116-174 27-79 (84)
273 smart00666 PB1 PB1 domain. Pho 35.9 62 0.0013 22.1 3.7 35 115-149 13-47 (81)
274 COG0089 RplW Ribosomal protein 35.4 85 0.0018 22.9 4.3 39 10-48 21-60 (94)
275 PF02192 PI3K_p85B: PI3-kinase 33.0 62 0.0014 22.7 3.2 22 13-34 2-23 (78)
276 cd01615 CIDE_N CIDE_N domain, 32.8 88 0.0019 22.0 3.9 51 122-176 20-72 (78)
277 PF12436 USP7_ICP0_bdg: ICP0-b 32.4 1.2E+02 0.0025 26.1 5.5 34 11-44 190-223 (249)
278 PF12053 DUF3534: Domain of un 32.3 2.5E+02 0.0055 22.2 8.1 70 1-73 1-80 (145)
279 PF06234 TmoB: Toluene-4-monoo 32.1 1.9E+02 0.0041 20.7 6.0 60 13-73 17-84 (85)
280 cd01612 APG12_C Ubiquitin-like 31.8 1.4E+02 0.003 21.3 4.9 60 14-73 19-81 (87)
281 PF04363 DUF496: Protein of un 30.3 1E+02 0.0022 22.2 3.9 35 193-227 36-70 (95)
282 CHL00030 rpl23 ribosomal prote 30.1 94 0.002 22.6 3.9 39 10-48 19-58 (93)
283 cd01776 Rin1_RA Ubiquitin doma 29.9 82 0.0018 22.5 3.3 42 115-156 16-62 (87)
284 PF14055 NVEALA: NVEALA protei 29.7 22 0.00048 23.9 0.5 15 225-239 31-45 (65)
285 PF14847 Ras_bdg_2: Ras-bindin 29.6 1.2E+02 0.0027 22.4 4.5 36 3-38 3-38 (105)
286 cd01776 Rin1_RA Ubiquitin doma 28.5 1.6E+02 0.0034 21.1 4.5 46 9-54 11-62 (87)
287 KOG2561|consensus 28.4 11 0.00023 35.4 -1.6 59 116-175 53-111 (568)
288 PRK12720 secretion system appa 28.2 3.8E+02 0.0082 26.8 8.7 51 197-247 475-529 (675)
289 PF02824 TGS: TGS domain; Int 27.8 1.1E+02 0.0024 19.9 3.6 58 3-70 1-58 (60)
290 TIGR03252 uncharacterized HhH- 27.8 1.9E+02 0.0041 23.7 5.7 48 192-239 17-68 (177)
291 PF12411 Choline_sulf_C: Choli 27.6 40 0.00086 22.0 1.4 11 229-239 43-53 (54)
292 PRK01777 hypothetical protein; 27.2 2.5E+02 0.0053 20.4 6.6 51 13-73 19-76 (95)
293 TIGR00691 spoT_relA (p)ppGpp s 27.1 6.5E+02 0.014 25.2 10.6 53 116-176 371-423 (683)
294 smart00143 PI3K_p85B PI3-kinas 27.0 82 0.0018 22.1 3.0 22 13-34 2-23 (78)
295 COG1422 Predicted membrane pro 26.7 1.2E+02 0.0026 25.3 4.4 46 195-240 61-106 (201)
296 TIGR02609 doc_partner putative 26.5 31 0.00068 23.7 0.8 54 158-229 19-72 (74)
297 cd00194 UBA Ubiquitin Associat 26.4 67 0.0015 18.5 2.2 30 196-225 3-32 (38)
298 cd01818 TIAM1_RBD Ubiquitin do 25.6 1.2E+02 0.0026 21.3 3.5 44 109-154 8-51 (77)
299 KOG2086|consensus 25.3 62 0.0014 29.7 2.7 56 115-171 318-377 (380)
300 KOG3439|consensus 25.1 94 0.002 23.4 3.1 38 116-153 48-85 (116)
301 cd06398 PB1_Joka2 The PB1 doma 24.9 1.3E+02 0.0027 21.7 3.7 40 110-149 9-52 (91)
302 cd06535 CIDE_N_CAD CIDE_N doma 24.8 1.7E+02 0.0038 20.5 4.3 54 14-73 15-70 (77)
303 PF00564 PB1: PB1 domain; Int 24.7 1.1E+02 0.0024 20.8 3.4 33 117-149 16-48 (84)
304 PF04126 Cyclophil_like: Cyclo 24.6 63 0.0014 24.5 2.2 29 1-30 1-29 (120)
305 PF10545 MADF_DNA_bdg: Alcohol 24.2 1.2E+02 0.0027 20.4 3.6 39 192-230 26-64 (85)
306 TIGR02132 phaR_Bmeg polyhydrox 24.1 2.4E+02 0.0052 23.2 5.5 49 192-243 35-83 (189)
307 COG4495 Uncharacterized protei 23.9 3.1E+02 0.0067 20.4 5.6 31 197-227 64-94 (109)
308 PF06424 PRP1_N: PRP1 splicing 23.4 1.3E+02 0.0028 23.4 3.8 46 192-237 66-124 (133)
309 KOG1364|consensus 23.3 88 0.0019 28.4 3.2 65 2-67 279-349 (356)
310 PF14702 hGDE_central: central 23.1 1.8E+02 0.0039 25.3 5.1 29 218-246 171-199 (260)
311 KOG1722|consensus 23.0 1.3E+02 0.0028 23.6 3.6 43 192-234 48-91 (155)
312 PRK12280 rplW 50S ribosomal pr 22.9 1.8E+02 0.0038 23.4 4.5 40 10-49 22-62 (158)
313 PRK06012 flhA flagellar biosyn 22.9 3.9E+02 0.0084 26.9 7.8 51 197-247 495-550 (697)
314 cd06408 PB1_NoxR The PB1 domai 22.7 2E+02 0.0044 20.6 4.4 38 110-150 11-48 (86)
315 COG4055 McrD Methyl coenzyme M 22.5 2.4E+02 0.0051 22.4 5.0 49 13-67 85-134 (165)
316 PF08825 E2_bind: E2 binding d 22.2 1.1E+02 0.0024 21.7 3.0 56 15-72 1-70 (84)
317 smart00295 B41 Band 4.1 homolo 21.8 4.1E+02 0.009 21.1 9.5 65 109-176 12-84 (207)
318 KOG4261|consensus 21.6 1.4E+02 0.0031 30.2 4.4 112 10-150 12-133 (1003)
319 PF14747 DUF4473: Domain of un 21.5 2.2E+02 0.0048 19.9 4.4 35 207-241 45-79 (82)
320 cd05484 retropepsin_like_LTR_2 21.4 1.8E+02 0.0039 20.3 4.0 48 3-51 3-54 (91)
321 KOG4598|consensus 21.4 5.8E+02 0.012 25.9 8.4 113 115-234 879-1007(1203)
322 cd01766 Ufm1 Urm1-like ubiquit 20.9 2.3E+02 0.0051 19.7 4.1 60 116-176 19-79 (82)
323 cd01778 RASSF1_RA Ubiquitin-li 20.7 3.5E+02 0.0076 19.8 6.6 36 8-43 14-49 (96)
324 PF03931 Skp1_POZ: Skp1 family 20.5 90 0.002 20.4 2.1 32 1-32 1-32 (62)
325 PRK11840 bifunctional sulfur c 20.1 2.9E+02 0.0063 24.9 5.8 54 116-175 9-62 (326)
No 1
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=6.3e-19 Score=124.26 Aligned_cols=73 Identities=42% Similarity=0.643 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| ||+++++|+|++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDY-SIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHC-CCCCCCEEEEEEcC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999874
No 2
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=5.9e-18 Score=120.37 Aligned_cols=73 Identities=26% Similarity=0.479 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQE-IFLD-VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~-~~~~-v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+. +.++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| ||+++++|+|+++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y-~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDY-NVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHc-CCCCCCEEEEEEec
Confidence 999999999997 6895 8999999999999999999999999999999999999999999 99999999999984
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=1.1e-17 Score=117.95 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+ +++++++|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.+|++| +|+++++||++++.
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~-~i~~~~tl~l~~~l 71 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQC-GVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHc-CCCCCCEEEEEEec
Confidence 8999998 37899999999999999999999999999999999999999999999999 99999999999984
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=1.5e-17 Score=117.67 Aligned_cols=73 Identities=22% Similarity=0.468 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| ++.++++||+.++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~-~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDY-KVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHc-CCCCCCEEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999874
No 5
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.73 E-value=1.4e-17 Score=116.82 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+|++..|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++| ||++|++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~y-gi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDY-EIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHc-CCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999 999999999864
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.73 E-value=3.1e-18 Score=127.97 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=84.5
Q ss_pred ccCCCCCCCEEEEEEecccccccccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccC
Q psy1973 58 DYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALK 137 (252)
Q Consensus 58 ~~~~i~~~s~i~l~~~~~~~~~~~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~g 137 (252)
.+ ++.+-+++|+.++ +.+.|+++|+.+ .|++ +.++|++++||.+||++|+++.|
T Consensus 9 ~~-~~~~~~~~~~~~~------------------~~~~M~I~Vk~l-----~G~~--~~leV~~~~TV~~lK~kI~~~~g 62 (103)
T cd01802 9 FF-NEDNMGPFHYKLP------------------FYDTMELFIETL-----TGTC--FELRVSPFETVISVKAKIQRLEG 62 (103)
T ss_pred cc-ccCCcceeEEeec------------------cCCCEEEEEEcC-----CCCE--EEEEeCCCCcHHHHHHHHHHHhC
Confidence 45 7778899999887 567899999988 6776 58999999999999999999999
Q ss_pred CCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 138 IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 138 ip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+++|+|+|+|+.|+|+.+|++| +|++|++||++++.
T Consensus 63 ip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~stL~l~~~l 100 (103)
T cd01802 63 IPVAQQHLIWNNMELEDEYCLNDY-NISEGCTLKLVLAM 100 (103)
T ss_pred CChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEec
Confidence 999999999999999999999999 99999999999986
No 7
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.72 E-value=4.4e-17 Score=115.54 Aligned_cols=73 Identities=33% Similarity=0.510 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKI--PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi--~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+++.+++++++||.+||++|++++|+ |+++|+|+|+|+.|+|+.+|++| ||++|++|++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEY-KIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHc-CCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 99999999999999999999999 99999999999874
No 8
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.72 E-value=3e-17 Score=122.70 Aligned_cols=73 Identities=32% Similarity=0.434 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++.
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~stL~l~~~l 100 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY-NISEGCTLKLVLAM 100 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999873
No 9
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=4.6e-17 Score=113.35 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=66.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+.||..+|+++.+++++++||.+||.+|++..|+|+++|+|+|+|+.|+|+.+|++| +|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~-~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQET-KIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc-CCCCCCEEEEEe
Confidence 368999999999999999999999999999999999999999999999999999999 999999999986
No 10
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=1.1e-16 Score=113.12 Aligned_cols=72 Identities=33% Similarity=0.584 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|+..+|+.+.++++++.||.+||++|++++|+|+++|+|+|+|+.|.|+.+|++| ++.+|++||+.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~-~i~~g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADY-KLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHc-CCCCCCEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999 9999999999987
No 11
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.70 E-value=9.9e-17 Score=112.09 Aligned_cols=72 Identities=36% Similarity=0.669 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+||+.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| |+++|++|+++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEY-KVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHC-CCCCCCEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999 9999999999764
No 12
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.70 E-value=9.1e-17 Score=113.45 Aligned_cols=73 Identities=36% Similarity=0.572 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| ++.+|++|++.++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~~ 73 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999983
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=7.8e-17 Score=114.67 Aligned_cols=71 Identities=27% Similarity=0.434 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|++..|+.+.+++++++||.+||++|+++.|+++++|+|+|+|+.|+|+ +|++| ||++|++|+|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~-gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDL-GLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHc-CCCCCCEEEEEee
Confidence 89999999999999999999999999999999999999999999999999999 99999 9999999999987
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.70 E-value=6.3e-17 Score=112.78 Aligned_cols=70 Identities=19% Similarity=0.373 Sum_probs=67.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+||+..|+++.+++++++||.+||++|+++.|+|+++|+|+|+|++|+|+.+|++| +|+++++|||+.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~-~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQEC-DLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999 9999999999864
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=8.3e-17 Score=113.40 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=68.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+||++.|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++| ||+++++|+|.++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~-~i~~~~tl~l~~~l 71 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEY-GLKPGCTVFMNLRL 71 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEc
Confidence 689999999999999999999999999999999999999999999999999999999 99999999999873
No 16
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.68 E-value=9.5e-18 Score=118.21 Aligned_cols=72 Identities=32% Similarity=0.510 Sum_probs=65.6
Q ss_pred HHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 97 YKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 97 ~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+|+.. .|++ +.++|++++||.+||++|+++.|+|+++|+|+|+|+.|.|+.+|++| ||++|++|++++++
T Consensus 2 ~i~vk~~-----~G~~--~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~l~l~~~~ 73 (74)
T cd01807 2 FLTVKLL-----QGRE--CSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDY-SIGPNAKLNLVVRP 73 (74)
T ss_pred EEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHC-CCCCCCEEEEEEcC
Confidence 3455555 5776 58999999999999999999999999999999999999999999999 99999999999985
No 17
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=1.4e-16 Score=113.90 Aligned_cols=73 Identities=27% Similarity=0.492 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L--~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+| +|+|+.|.|+.+|++| ||++|++|+|++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~-gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQ-GLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHc-CCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 8999999999999999 99999999999985
No 18
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.66 E-value=3.2e-17 Score=115.54 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=59.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
++++|++++||+++|++|+++.|+|+++|+|+|+|+.|.|+++|++| +|+++++||++++.
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~-~i~~~~tl~l~~~l 71 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQC-GVEELCTLEVAGRL 71 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHc-CCCCCCEEEEEEec
Confidence 58999999999999999999999999999999999999999999999 99999999999986
No 19
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.66 E-value=5.5e-16 Score=108.32 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+||+..|+ ..+++++++||.+||++|+++.|+++++|+|+|+|+.|+|+.+|++| |+++|++|||+++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~-~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQH-NIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHc-CCCCCCEEEEEEC
Confidence 68999999997 58999999999999999999999999999999999999999999999 9999999999874
No 20
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.65 E-value=4.6e-17 Score=115.78 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=65.7
Q ss_pred HHHHHHHhhccccccccceeeee-cCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIK-VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
|+|+||++ .|+.. +.++ +.+++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++| ||++|++|++++
T Consensus 1 M~I~vk~~-----~G~~~-~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y-~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTM-----DGKET-RTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDY-NVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcC-----CCCEE-EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHc-CCCCCCEEEEEE
Confidence 34566666 56642 3784 8899999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
|.
T Consensus 74 ~~ 75 (78)
T cd01797 74 RQ 75 (78)
T ss_pred ec
Confidence 87
No 21
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.65 E-value=9.1e-16 Score=106.41 Aligned_cols=68 Identities=38% Similarity=0.657 Sum_probs=65.5
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 6 KVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 6 k~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+++|+.+.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++| ||++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~-~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDY-GIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGG-TTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHc-CCCCCCEEEEEEec
Confidence 578999999999999999999999999999999999999999999999999999 99999999999873
No 22
>KOG0005|consensus
Probab=99.63 E-value=2.6e-16 Score=102.40 Aligned_cols=70 Identities=33% Similarity=0.550 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
|.|.|++++|+.+.++++|+++|..+|++|+++.||||.+|+|+|.|+.+.|+.+-.+| ++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y-~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHY-NLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHh-hhccceeEeeC
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999974
No 23
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.62 E-value=1.4e-15 Score=106.18 Aligned_cols=68 Identities=28% Similarity=0.444 Sum_probs=64.4
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCC-ccccccCCCCCCCEEEEE
Q psy1973 3 ISVKVL-QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 3 i~Vk~~-~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~~i~~~s~i~l~ 71 (252)
|+|++. +|+++.+++++++||.+||.+|++++|+|+++|+|+|+|+.|+|+ .+|++| ||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~-gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALY-GVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHc-CCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999887 689999 99999999974
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.62 E-value=2.2e-16 Score=109.99 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=60.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.|++ +.+++++++||.++|++|+++.|+|+++|+|+|+|++|.|+.+|++| ||++|++||++.|
T Consensus 7 ~g~~--~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~-~i~~~stl~l~~~ 70 (70)
T cd01798 7 TGHT--FPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQEC-DLGQQSILHAVRR 70 (70)
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEeC
Confidence 5776 58999999999999999999999999999999999999999999999 9999999999875
No 25
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.61 E-value=3.8e-16 Score=110.03 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=62.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|++ +.+++++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| ||++|++|+++++.
T Consensus 7 ~g~~--~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~-~i~~~~tl~l~~~l 71 (74)
T cd01810 7 KGRS--SIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEY-GLKPGCTVFMNLRL 71 (74)
T ss_pred CCCE--EEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEc
Confidence 6776 58999999999999999999999999999999999999999999999 99999999999986
No 26
>PTZ00044 ubiquitin; Provisional
Probab=99.61 E-value=1.9e-16 Score=111.98 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=66.8
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+++ .|++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++| +|++|++||++++
T Consensus 1 m~i~vk~~-----~G~~--~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~-~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTL-----TGKK--QSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDY-KVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHc-CCCCCCEEEEEEE
Confidence 34566666 6776 48999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
+
T Consensus 73 ~ 73 (76)
T PTZ00044 73 L 73 (76)
T ss_pred c
Confidence 6
No 27
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.61 E-value=2.9e-15 Score=105.38 Aligned_cols=70 Identities=31% Similarity=0.385 Sum_probs=66.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE---cCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA---TGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~---~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|.|.|++ +|+.+.++|++++||++||++|++.+|+|+++|+|+| .|+.|.|+.+|++| +|++|+.|+|+-
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~-~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL-KLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc-CCCCCCEEEEEe
Confidence 6899988 8999999999999999999999999999999999996 89999999999999 999999999874
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.60 E-value=1.3e-15 Score=106.11 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=60.4
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|++ +.+++++++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++| +|++|++|||++
T Consensus 7 ~G~~--~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~-~i~~~~tv~~~~ 69 (70)
T cd01794 7 TGKD--VKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQET-KIQKDYVVQVIV 69 (70)
T ss_pred CCCE--EEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc-CCCCCCEEEEEe
Confidence 5776 59999999999999999999999999999999999999999999999 999999999986
No 29
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=5.5e-15 Score=103.00 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+||+. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|.|+.+|++| |+++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~-~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMS-GVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHc-CCCCCCEEEEec
Confidence 68999995 99999999999999999999999999999999999999999999999999 999999999864
No 30
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.58 E-value=4.4e-16 Score=109.22 Aligned_cols=63 Identities=24% Similarity=0.193 Sum_probs=58.9
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|+. +.+++++++||.+||++|+++.|+|+++|||+|+|+.|.|+.+|++| ||++|++|||-.
T Consensus 10 ~Gk~--~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~y-gi~~~stv~l~~ 72 (73)
T cd01791 10 LGKK--VRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDY-EIHDGMNLELYY 72 (73)
T ss_pred CCCE--EEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHc-CCCCCCEEEEEe
Confidence 4665 58899999999999999999999999999999999999999999999 999999999863
No 31
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.58 E-value=5e-15 Score=104.67 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=63.8
Q ss_pred CEEEEEeCCCcEEEE--EecCCCCHHHHHHHHHHHhC--CCCCCeEEEEcCeecCCCccccccCC--CCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFL--DVNSEMSILELKNKINEALK--IPVSDQKLLATGRPLLDTKQILDYPQ--IKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~--~v~~~~TV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~~~--i~~~s~i~l~~ 72 (252)
|.|+||+.+|+.+.+ ++++++||.+||++|++..+ .++++|+|+|+|+.|+|+.+|++| . +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~-~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDV-LRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHH-hhcccCCceEEEEe
Confidence 579999999999554 55899999999999999874 557999999999999999999999 8 99999999985
No 32
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.56 E-value=1.3e-15 Score=107.91 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=65.1
Q ss_pred HHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCC--CCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 97 YKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKI--PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 97 ~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
+++|+.. .|+. +.+++++++||.+||++|++..|+ |+++|+|+|+|+.|.|+.+|++| ||++|++|++++
T Consensus 2 ~i~vk~~-----~g~~--~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~i~~~~ 73 (77)
T cd01805 2 KITFKTL-----KQQT--FPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEY-KIDEKDFVVVMV 73 (77)
T ss_pred EEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHc-CCCCCCEEEEEE
Confidence 3455554 5666 589999999999999999999999 99999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
++
T Consensus 74 ~~ 75 (77)
T cd01805 74 SK 75 (77)
T ss_pred ec
Confidence 86
No 33
>KOG0003|consensus
Probab=99.56 E-value=3.2e-16 Score=114.08 Aligned_cols=73 Identities=36% Similarity=0.571 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+++++.+.|++.++++++++||..+|.+|..+.|+|+++|+|+|+|+.|+|+.||++| ||+..+|||++.+.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y-~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 73 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCccccc-CccchhhhhhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999874
No 34
>KOG0003|consensus
Probab=99.56 E-value=6.5e-17 Score=117.66 Aligned_cols=72 Identities=28% Similarity=0.483 Sum_probs=67.2
Q ss_pred HHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 97 YKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 97 ~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
++|++++ +|+++ +++++|++||.++|.+|+.+.|+|+++|+|+|+|+.|+|+.|+++| ||+..++||++.|.
T Consensus 2 ~~~~~~~-----~GKT~--~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y-~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 2 QIFVKTL-----TGKTI--TLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 73 (128)
T ss_pred cEEEEEe-----eCceE--EEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCccccc-CccchhhhhhhHHH
Confidence 3456666 89985 9999999999999999999999999999999999999999999999 99999999999987
No 35
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.56 E-value=1.1e-14 Score=102.98 Aligned_cols=66 Identities=29% Similarity=0.407 Sum_probs=63.5
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
++|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++| +|.++++|+|+++.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~-~i~~g~~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYY-NLANGTIIHLQLKE 70 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHc-CCCCCCEEEEEEec
Confidence 4789999999999999999999999999999999999999999999999999 99999999999984
No 36
>KOG0005|consensus
Probab=99.55 E-value=6.2e-16 Score=100.69 Aligned_cols=62 Identities=26% Similarity=0.428 Sum_probs=59.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+|+- +.++++|+++|..+|++|+++.|||+.+|||+|.|+.+.|+.+-.+| ++..||++|++
T Consensus 9 t~Ke--IeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y-~~~~GSVlHlv 70 (70)
T KOG0005|consen 9 TGKE--IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHY-NLLGGSVLHLV 70 (70)
T ss_pred ccce--EEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHh-hhccceeEeeC
Confidence 6775 59999999999999999999999999999999999999999999999 99999999985
No 37
>KOG0004|consensus
Probab=99.54 E-value=3.1e-15 Score=116.58 Aligned_cols=73 Identities=27% Similarity=0.472 Sum_probs=68.9
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|.|||+.+ +|+++ +.++.+++||..+|.+|++.+|||+++|||+|.|+.|+|+++|+|| +|+..++|||+++
T Consensus 1 m~ifVk~l-----~~kti--~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY-~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTL-----TGKTI--TLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 72 (156)
T ss_pred Cccchhhc-----cccce--eeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccc-cccccceEEEEEE
Confidence 56899988 67774 9999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 73 l 73 (156)
T KOG0004|consen 73 L 73 (156)
T ss_pred e
Confidence 6
No 38
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=1.9e-15 Score=108.04 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=65.6
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEE--EEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
|+++|+.. .|+. +.++++++.||.+||++|++..|+|+++|+| +|+|+.|.|+.+|++| ||++|++|+++
T Consensus 3 ~~i~Vk~~-----~G~~--~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~-gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKML-----GGNE--FLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQ-GLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeC-----CCCE--EEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHc-CCCCCCEEEEE
Confidence 34455555 5776 5889999999999999999999999999999 8999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
+++
T Consensus 75 ~~~ 77 (80)
T cd01792 75 VQN 77 (80)
T ss_pred EEc
Confidence 997
No 39
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=1.2e-14 Score=100.78 Aligned_cols=65 Identities=37% Similarity=0.596 Sum_probs=61.7
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++|++++|+
T Consensus 4 ~g~~--~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~-~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 4 SGKT--FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDY-GIKDGSTIHLVIKP 68 (69)
T ss_dssp TSEE--EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGG-TTSTTEEEEEEESS
T ss_pred CCcE--EEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHc-CCCCCCEEEEEEec
Confidence 5665 69999999999999999999999999999999999999999999999 99999999999875
No 40
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.53 E-value=2.3e-15 Score=105.13 Aligned_cols=64 Identities=33% Similarity=0.658 Sum_probs=60.3
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.|++ +.+++.+++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++||++.|
T Consensus 9 ~g~~--~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~l~l~~~ 72 (72)
T cd01809 9 DSQT--HTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEY-KVEDGHTIHLVKR 72 (72)
T ss_pred CCCE--EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHC-CCCCCCEEEEEeC
Confidence 5666 48999999999999999999999999999999999999999999999 9999999999875
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.53 E-value=2.5e-15 Score=105.00 Aligned_cols=59 Identities=25% Similarity=0.435 Sum_probs=57.1
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.++++++.||.+||++|+++.|+|.++|+|+|+|+.|.|+.+|++| ||++|++||+++|
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~-~i~~~stl~l~~~ 71 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQH-NIKDGLTVHLVIK 71 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHc-CCCCCCEEEEEEC
Confidence 7899999999999999999999999999999999999999999999 9999999999875
No 42
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.53 E-value=3.3e-15 Score=105.40 Aligned_cols=65 Identities=26% Similarity=0.452 Sum_probs=61.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++.++.||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| +|++|++||++++.
T Consensus 9 ~g~~--~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~-~i~~g~~i~l~~~~ 73 (76)
T cd01806 9 TGKE--IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADY-KLEGGSVLHLVLAL 73 (76)
T ss_pred CCCE--EEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHc-CCCCCCEEEEEEEc
Confidence 5776 48899999999999999999999999999999999999999999999 99999999999985
No 43
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.53 E-value=3.1e-15 Score=105.53 Aligned_cols=65 Identities=29% Similarity=0.487 Sum_probs=61.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++| +|++|++|+++++.
T Consensus 9 ~g~~--~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~~ 73 (76)
T cd01803 9 TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (76)
T ss_pred CCCE--EEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEc
Confidence 5676 48999999999999999999999999999999999999999999999 99999999999986
No 44
>KOG0004|consensus
Probab=99.53 E-value=6.1e-15 Score=114.97 Aligned_cols=73 Identities=36% Similarity=0.573 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+.+.|+++++++.+++||..+|.+|+...|||+++|+|+|.|++|+|+.+|+|| +|+..++|+|+++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY-~Iqkestl~l~l~l 73 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccc-cccccceEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999984
No 45
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.52 E-value=3.5e-15 Score=106.17 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=60.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.++++++.||.+||++|+++.|+|+++|+|+|+|+.|.|+ +|++| ||++|++|+++...
T Consensus 10 ~G~~--~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~-gi~~~~~i~l~~~~ 73 (78)
T cd01804 10 TGTR--FDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDL-GLGDGSKLTLVPTV 73 (78)
T ss_pred CCCE--EEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHc-CCCCCCEEEEEeec
Confidence 4665 58999999999999999999999999999999999999999 99999 99999999999875
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.51 E-value=2.3e-14 Score=101.48 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=62.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|++ +.+++++++||.+||++|+...|+|+++|+|+|+|+.|.|+++|++| +|++|++|+++++.
T Consensus 6 ~g~~--~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~-~i~~g~~l~v~~~~ 70 (76)
T cd01800 6 NGQM--LNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYY-NLANGTIIHLQLKE 70 (76)
T ss_pred CCeE--EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHc-CCCCCCEEEEEEec
Confidence 5776 59999999999999999999999999999999999999999999999 99999999999986
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.50 E-value=1.6e-13 Score=99.69 Aligned_cols=72 Identities=15% Similarity=0.390 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|++.+|+.+.+.|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+.+| +|.+|++|+++++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l-~m~d~d~I~v~l~ 83 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDL-GMEDGDEIEVMLE 83 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHc-CCCCCCEEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999 9999999999987
No 48
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.49 E-value=1.1e-13 Score=93.97 Aligned_cols=64 Identities=38% Similarity=0.642 Sum_probs=61.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCC
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGT 66 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s 66 (252)
|+|+||+.+ +.+.++|+++.||.+||.+|+..+|+|+++|+|+|+|+.|.|+.+|++| |+++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~-~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADY-NIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHc-CCcCCC
Confidence 899999988 7899999999999999999999999999999999999999999999999 999875
No 49
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=9.2e-14 Score=125.77 Aligned_cols=74 Identities=34% Similarity=0.539 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEecc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALK---IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 75 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~g---i~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~ 75 (252)
|+|+||++.|+++.++|++++||.+||++|+...| +++++|+|+|+|+.|+|+++|++| +|+++++|++++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy-~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREY-KIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEeccC
Confidence 89999999999999999999999999999999998 999999999999999999999999 999999999998863
No 50
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.47 E-value=5.7e-14 Score=98.08 Aligned_cols=62 Identities=26% Similarity=0.419 Sum_probs=57.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCC-CCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~~i~~gs~l~l~ 173 (252)
.|++ +.+++++++||.+||++|+++.|+|+++|+|+|+|+.|.|+ .+|++| ||++|++|+|.
T Consensus 8 ~g~~--~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~-gi~~~~~l~l~ 70 (71)
T cd01796 8 SETT--FSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALY-GVKDGDLVVLR 70 (71)
T ss_pred CCCE--EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHc-CCCCCCEEEEe
Confidence 4565 59999999999999999999999999999999999999997 689999 99999999984
No 51
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.47 E-value=5.3e-14 Score=98.16 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=49.9
Q ss_pred CcccHHHHHHHhhccc--CCC-CCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 121 SEMSILELKNKINEAL--KIP-VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 121 ~~~tV~~lK~~i~~~~--gip-~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.++||.+||++|+++. |++ +++|||+|+|+.|.|+++|++| ||++|++|||+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dy-gI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFY-GIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHc-CCCCCCEEEEEeC
Confidence 4789999999999995 575 9999999999999999999999 9999999999864
No 52
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.45 E-value=2.1e-14 Score=101.50 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=57.4
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccC--CCCCCeEEEEcCeecCCCCCcccccC--CCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALK--IPVSDQKLLATGRPLLDTKQILDYPQ--IKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~y~~--i~~gs~l~l~~ 174 (252)
.|+...+.+++++++||.+||++|+...+ .|+++|||||+||.|.|+.+|++| + +.+|.+|||+.
T Consensus 10 ~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~-~~~~~~~~tiHLV~ 78 (79)
T cd01790 10 NQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDV-LRKQDEYHMVHLVC 78 (79)
T ss_pred CCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHH-hhcccCCceEEEEe
Confidence 45544468888999999999999999874 458999999999999999999999 8 99999999985
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.43 E-value=4.5e-13 Score=94.42 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=59.5
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecC-CCccccccCCCC-CCCEEEEEE
Q psy1973 6 KVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL-DTKQILDYPQIK-EGTKLNLVV 72 (252)
Q Consensus 6 k~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-d~~tL~~~~~i~-~~s~i~l~~ 72 (252)
+...|.++.++|++++||++||.+|++++|+|+++|+| |+|+.|. |+.+|++| |+. +|++++|.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~y-gi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSH-GIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHc-CCCCCCCEEEEEe
Confidence 45568889999999999999999999999999999999 9999985 77999999 998 889999875
No 54
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=5e-13 Score=121.03 Aligned_cols=74 Identities=27% Similarity=0.396 Sum_probs=66.5
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccC---CCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALK---IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
|.|+||++ .|++ +.|+|++++||.+||++|+...| +|+++|+|+|+|+.|.|+++|++| +|++|++|++
T Consensus 1 MkItVKtl-----~g~~--~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy-~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTL-----QQQK--FKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREY-KIKEKDFVVV 72 (378)
T ss_pred CEEEEEeC-----CCCE--EEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHc-CCCCCCEEEE
Confidence 34566666 5676 69999999999999999999998 999999999999999999999999 9999999999
Q ss_pred EEecC
Q psy1973 173 VVKRA 177 (252)
Q Consensus 173 ~~~~~ 177 (252)
++++.
T Consensus 73 mv~k~ 77 (378)
T TIGR00601 73 MVSKP 77 (378)
T ss_pred EeccC
Confidence 98873
No 55
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.38 E-value=6.9e-13 Score=92.55 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 19 SEMSILELKNKINEAL--KIP-VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 19 ~~~TV~~lK~~I~~~~--gi~-~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.++||.+||++|+++. |++ +++|+|+|+|+.|+|+.+|++| ||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dy-gI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFY-GIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHc-CCCCCCEEEEEe
Confidence 4799999999999996 575 8999999999999999999999 999999999975
No 56
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.37 E-value=6.8e-13 Score=93.34 Aligned_cols=63 Identities=27% Similarity=0.326 Sum_probs=58.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEE---cCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLA---TGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|+. |.+++++++||++||++|++..|+|+++|+|+| +|+.+.|+.+|++| +|++|++|+|+.
T Consensus 8 ~g~~--~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~-~i~~g~~i~lmG 73 (74)
T cd01813 8 GGQE--YSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL-KLKPNTKIMMMG 73 (74)
T ss_pred CCEE--EEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc-CCCCCCEEEEEe
Confidence 4555 689999999999999999999999999999996 99999999999999 999999999985
No 57
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.35 E-value=1e-12 Score=91.45 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=58.2
Q ss_pred cccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 110 NKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 110 g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
|+. +.++++++.||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++|+++.
T Consensus 9 g~~--~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~-~i~~g~~l~v~~ 70 (71)
T cd01812 9 GES--HDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMS-GVKDGSKVMLLE 70 (71)
T ss_pred CEE--EEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHc-CCCCCCEEEEec
Confidence 555 48899999999999999999999999999999999999999999999 999999999874
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.32 E-value=2.3e-12 Score=90.83 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=55.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecC-CCCCcccccCCC-CCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL-DTKQILDYPQIK-EGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~~i~-~gs~l~l~~ 174 (252)
.|.+ +.+++.+++||++||++|+.+.|+|+++|+| |.|+.|. |+.+|++| |++ +|+++||.+
T Consensus 11 ~~~t--~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~y-gi~~~g~~~~l~~ 74 (75)
T cd01799 11 HTVT--IWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSH-GIRTNGDSAFLYI 74 (75)
T ss_pred CCCe--EEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHc-CCCCCCCEEEEEe
Confidence 3454 4899999999999999999999999999999 9999996 66899999 998 889999864
No 59
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.32 E-value=8.3e-12 Score=85.87 Aligned_cols=68 Identities=37% Similarity=0.613 Sum_probs=64.2
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 4 SVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 4 ~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.|+..+|+.+.+.++++.||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|.+| ++.+++.|++..
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~-~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDY-GIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHC-CCCCCCEEEEEE
Confidence 36778899999999999999999999999999999999999999999999999999 999999999864
No 60
>KOG0011|consensus
Probab=99.29 E-value=6.5e-12 Score=109.17 Aligned_cols=74 Identities=30% Similarity=0.513 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEecc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALK--IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 75 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~ 75 (252)
|+|+||++.|.+|++++.|++||.++|++|+...| +|+..|+|+|+|+.|.|+.++.+| +|++++.|.+++++.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Ey-kv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEY-KVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhh-ccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999 999999999999864
No 61
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.27 E-value=1.8e-11 Score=85.48 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=66.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV-SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~-~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+|++.+|+.+.+.|.+++++..|++.++++.|+++ +..+|+|+|+.|+++.|+++| |+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~-~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL-GIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH-T-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC-CCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999 999999999864
No 62
>KOG0010|consensus
Probab=99.27 E-value=5.8e-12 Score=114.79 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEecc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 75 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~ 75 (252)
++|+||+.++ .+.|.|..+.||.+||+.|...+++++++++|+|.||.|+|+.||..| ||++|.||||+++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~-gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQY-GIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHc-CCCCCcEEEEEeccC
Confidence 4689999777 789999999999999999999999999999999999999999999999 999999999999853
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.27 E-value=4.7e-12 Score=94.34 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=54.2
Q ss_pred eeecCCcccHHHHHHHhhcc-----cCCC--CCCeEEEEcCeecCCCCCcccccC------CCCCCEEEEEEecC
Q psy1973 116 FIKVNSEMSILELKNKINEA-----LKIP--VSDQKLLATGRPLLDTKQILDYPQ------IKEGTKLNLVVKRA 177 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~y~~------i~~gs~l~l~~~~~ 177 (252)
+..+.+++||.+||++|++. +++| +++|+|||.|+.|+|++||++| + +....|+||+++.+
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~-~~p~g~~~~~~~TmHvvlr~~ 92 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGEC-RSPVGDIAGGVITMHVVVQPP 92 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHh-CCcccccCCCceEEEEEecCC
Confidence 45667999999999999944 4555 9999999999999999999999 9 78889999999974
No 64
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.26 E-value=3e-12 Score=92.91 Aligned_cols=74 Identities=11% Similarity=0.244 Sum_probs=66.4
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|.|+|+.. .|+. +.+.|.+++|+..||.+++++.|+|+++|+|+|+|+.|.++.|+.+| ++++|++|++++
T Consensus 11 ~i~I~v~~~-----~g~~--~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l-~m~d~d~I~v~l 82 (87)
T cd01763 11 HINLKVKGQ-----DGNE--VFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDL-GMEDGDEIEVML 82 (87)
T ss_pred eEEEEEECC-----CCCE--EEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHc-CCCCCCEEEEEE
Confidence 345555544 5776 48999999999999999999999999999999999999999999999 999999999998
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
+.
T Consensus 83 ~l 84 (87)
T cd01763 83 EQ 84 (87)
T ss_pred ec
Confidence 75
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.23 E-value=1e-11 Score=92.46 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=63.1
Q ss_pred EEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHh-----CCC--CCCeEEEEcCeecCCCccccccCC------CCCCCE
Q psy1973 2 KISVKVLQGQE-IFLDVNSEMSILELKNKINEAL-----KIP--VSDQKLLATGRPLLDTKQILDYPQ------IKEGTK 67 (252)
Q Consensus 2 ~i~Vk~~~g~~-~~~~v~~~~TV~~lK~~I~~~~-----gi~--~~~q~L~~~G~~L~d~~tL~~~~~------i~~~s~ 67 (252)
.|.+|..+|.. =.+.+++++||.+||++|++.. ++| +++|+|+|+|+.|+|+.||++| + +....|
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~-~~p~g~~~~~~~T 84 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGEC-RSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHh-CCcccccCCCceE
Confidence 57788888855 4678889999999999999544 455 9999999999999999999999 9 777899
Q ss_pred EEEEEecc
Q psy1973 68 LNLVVKRA 75 (252)
Q Consensus 68 i~l~~~~~ 75 (252)
+||++++.
T Consensus 85 mHvvlr~~ 92 (113)
T cd01814 85 MHVVVQPP 92 (113)
T ss_pred EEEEecCC
Confidence 99999963
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.23 E-value=3.1e-11 Score=87.47 Aligned_cols=60 Identities=23% Similarity=0.221 Sum_probs=56.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecC-CCccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL-DTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
..+.|++++||.+||.+|.+.++++|.+|+|+|+|+.|. |..||++| ||..+++|+|.++
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssy-Gv~sgSvl~Llid 77 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTL-GVIPESVILLKAD 77 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhc-CCCCCCEEEEEec
Confidence 578899999999999999999999999999999999884 57999999 9999999999986
No 67
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.22 E-value=1.9e-11 Score=88.59 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=57.3
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCC-CCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+.|++++||.+||.+|.+.+++|+.+|+|+|+|+.|.|+ +||++| ||..||+|+|.++.
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssy-Gv~sgSvl~Llide 78 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTL-GVIPESVILLKADE 78 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhc-CCCCCCEEEEEecC
Confidence 38899999999999999999999999999999999999865 599999 99999999999975
No 68
>KOG0011|consensus
Probab=99.15 E-value=9.2e-11 Score=102.07 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=66.8
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccC--CCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALK--IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
|.+++|++ .|.. |++++.|++||.++|++|+...| .|..+|+|||+|+.|.|+.++.+| +|+++..|.++
T Consensus 1 m~lt~KtL-----~q~~--F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Ey-kv~E~~fiVvM 72 (340)
T KOG0011|consen 1 MKLTVKTL-----KQQT--FTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEY-KVKEKKFIVVM 72 (340)
T ss_pred CeeEeeec-----cCce--eEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhh-ccccCceEEEE
Confidence 34567776 4555 79999999999999999999998 899999999999999999999999 99999999999
Q ss_pred EecC
Q psy1973 174 VKRA 177 (252)
Q Consensus 174 ~~~~ 177 (252)
+.+.
T Consensus 73 lsK~ 76 (340)
T KOG0011|consen 73 LSKD 76 (340)
T ss_pred EecC
Confidence 9874
No 69
>KOG0010|consensus
Probab=99.10 E-value=1e-10 Score=106.77 Aligned_cols=62 Identities=31% Similarity=0.485 Sum_probs=60.1
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEecC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 177 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~ 177 (252)
+.+.|..+.||.+||+.|...+++|+++++|||.||+|+|+.||..| ||++|.|||||+|..
T Consensus 27 ~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~-gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 27 YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQY-GIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHc-CCCCCcEEEEEeccC
Confidence 59999999999999999999999999999999999999999999999 999999999999964
No 70
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.09 E-value=9.7e-11 Score=79.32 Aligned_cols=53 Identities=36% Similarity=0.601 Sum_probs=50.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs 168 (252)
+.++++++.||++||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|+
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~-~i~~~~ 64 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADY-NIQDGS 64 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHc-CCcCCC
Confidence 58899999999999999999999999999999999999999999999 999985
No 71
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.08 E-value=2.5e-10 Score=78.39 Aligned_cols=63 Identities=33% Similarity=0.539 Sum_probs=58.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|+. +.+.+.++.||.+||++|+...|+|++.|+|+|+|+.|.|+.+|.+| ++.+|+.|++..
T Consensus 6 ~~~~--~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~-~v~~~~~i~v~~ 68 (69)
T cd01769 6 TGKT--FELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDY-GIQDGSTLHLVL 68 (69)
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHC-CCCCCCEEEEEE
Confidence 3565 48889999999999999999999999999999999999999999999 999999999875
No 72
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.98 E-value=3.4e-09 Score=76.30 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=58.6
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EEcCe-----ec-CCCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQ-GQEIFLDVNSEMSILELKNKINEALKIPVSDQKL-LATGR-----PL-LDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~-g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L-~~~G~-----~L-~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.|+|++.. ....+..++++.||.+||++++..+|++|..|+| +|.|+ .| +|+.+|++| ++.+|.+||+.-.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y-~~~dg~~IhVvD~ 81 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSY-PVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeec-cCCCCCEEEEEeC
Confidence 46666633 2234455999999999999999999999999999 58887 45 678999999 9999999999754
No 73
>KOG0001|consensus
Probab=98.87 E-value=2e-08 Score=68.97 Aligned_cols=71 Identities=41% Similarity=0.641 Sum_probs=67.5
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
++++...|+.+.+.+.+..+|..+|.+|+...|+++++|++.+.|+.|.|+.++.+| +|..++++++..+.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~-~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADY-NIQEGSTLHLVLSL 72 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHh-CCCCCCEEEEEEec
Confidence 577788999999999999999999999999999999999999999999999999999 99999999998873
No 74
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.86 E-value=9.3e-09 Score=76.46 Aligned_cols=73 Identities=25% Similarity=0.374 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCC-------CCCCEEEEEE
Q psy1973 1 MKISVKVLQGQE-IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI-------KEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i-------~~~s~i~l~~ 72 (252)
|.+|++....++ +.++..++.||.+||++|+.....||++|+|+-.+..|+|++||++| |+ +..++|-|.+
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~-g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDC-GFTSQTARPQAPATVGLAF 79 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHc-CccccccccCCCCeEEEEE
Confidence 677887777766 77899999999999999999999999999999777789999999999 99 6788999999
Q ss_pred ec
Q psy1973 73 KR 74 (252)
Q Consensus 73 ~~ 74 (252)
+.
T Consensus 80 r~ 81 (119)
T cd01788 80 RS 81 (119)
T ss_pred ec
Confidence 84
No 75
>PLN02560 enoyl-CoA reductase
Probab=98.84 E-value=1.1e-08 Score=90.79 Aligned_cols=70 Identities=31% Similarity=0.426 Sum_probs=62.8
Q ss_pred CEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEEc---C----eecCCCccccccCCCCCCCEEE
Q psy1973 1 MKISVKVLQGQEI---FLDVNSEMSILELKNKINEALKI-PVSDQKLLAT---G----RPLLDTKQILDYPQIKEGTKLN 69 (252)
Q Consensus 1 M~i~Vk~~~g~~~---~~~v~~~~TV~~lK~~I~~~~gi-~~~~q~L~~~---G----~~L~d~~tL~~~~~i~~~s~i~ 69 (252)
|+|+|+..+|+.+ ++++++++||++||++|+++.++ ++++|+|.+. | ..|+|+++|+++ |+++|++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~-gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY-GLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhc-CCCCCceEE
Confidence 8999999999886 79999999999999999999986 8999999973 3 378999999999 999999977
Q ss_pred EE
Q psy1973 70 LV 71 (252)
Q Consensus 70 l~ 71 (252)
+-
T Consensus 80 ~k 81 (308)
T PLN02560 80 FK 81 (308)
T ss_pred EE
Confidence 63
No 76
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.80 E-value=2.8e-08 Score=72.01 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=57.2
Q ss_pred EEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc----Ce---ec-CCCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQG--QEIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT----GR---PL-LDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g--~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~----G~---~L-~d~~tL~~~~~i~~~s~i~l~ 71 (252)
+|+|.+... ......++.+.||.+||.+|+..+|+|++.|+|.+. +. .+ +|..+|.+| |+.+|.+||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y-~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSY-GIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHH-T-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecC-CCCCCCEEEEE
Confidence 567777555 378889999999999999999999999999999765 22 23 568999999 99999999987
Q ss_pred Ee
Q psy1973 72 VK 73 (252)
Q Consensus 72 ~~ 73 (252)
-.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 54
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.80 E-value=1.2e-08 Score=73.47 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=53.4
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEE-EcCe-----ec-CCCCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLL-ATGR-----PL-LDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~-----~L-~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
...+.++.||.+||++++...|+|++.|+|. |.|+ .| .|..+|++| |+++|.+||++-..
T Consensus 16 ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y-~~~dg~~IhVvD~~ 82 (84)
T cd01789 16 EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSY-PVDDGCRIHVIDVS 82 (84)
T ss_pred eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeec-cCCCCCEEEEEeCC
Confidence 6668899999999999999999999999994 8888 45 677799999 99999999998643
No 78
>KOG0001|consensus
Probab=98.70 E-value=5.9e-08 Score=66.59 Aligned_cols=65 Identities=35% Similarity=0.564 Sum_probs=61.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+.+.+..+|..+|.+|+...|+|.++|++.+.|+.|.|+.++.+| +|..+++++++.+.
T Consensus 8 ~gk~--~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~-~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 8 DGKT--ITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADY-NIQEGSTLHLVLSL 72 (75)
T ss_pred CCCE--EEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHh-CCCCCCEEEEEEec
Confidence 5676 58999999999999999999999999999999999999999999999 99999999999886
No 79
>KOG4248|consensus
Probab=98.68 E-value=2.8e-08 Score=97.43 Aligned_cols=72 Identities=29% Similarity=0.556 Sum_probs=69.4
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEecc
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 75 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~ 75 (252)
.|+||+++.++.+|.|...+||.+||..|.++.+|+.+.|||+|.|+.|.|++++.+| +| +|.+|||+-+++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~-~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEY-NV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhc-cC-CCeEEEeeccCC
Confidence 4889999999999999999999999999999999999999999999999999999999 99 999999999865
No 80
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.67 E-value=1.6e-07 Score=70.92 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=56.3
Q ss_pred EEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEEcCeecCCCccccccCCCCCCC------E
Q psy1973 2 KISVKVLQGQ-EIFLDVNSEMSILELKNKINEALK-------IPVSDQKLLATGRPLLDTKQILDYPQIKEGT------K 67 (252)
Q Consensus 2 ~i~Vk~~~g~-~~~~~v~~~~TV~~lK~~I~~~~g-------i~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s------~ 67 (252)
.|.++..+|. +-.+.+++++||++||+.|..... ..++..||+|.|+.|+|+.+|.++ .+..|. +
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~-~~~~~~~~~~~~v 82 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDC-RLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGG-T--TTSETT--EE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHh-CCCCCCCCCCCEE
Confidence 5778888999 788999999999999999997641 245778999999999999999999 998766 6
Q ss_pred EEEEEec
Q psy1973 68 LNLVVKR 74 (252)
Q Consensus 68 i~l~~~~ 74 (252)
+||++++
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 8888875
No 81
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.66 E-value=2.3e-08 Score=69.61 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=56.2
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCC-CCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPV-SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|+. +.+.|.+++++..|++..+++.|+|. +..+|+|.|+.|.++.|+.+| ++++|++|++++
T Consensus 9 ~~~~--~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~-~ied~d~Idv~I 72 (72)
T PF11976_consen 9 DGKE--IKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL-GIEDGDTIDVII 72 (72)
T ss_dssp TSEE--EEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH-T-STTEEEEEE-
T ss_pred CCCE--EEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC-CCCCCCEEEEEC
Confidence 4554 58999999999999999999999999 999999999999999999999 999999999874
No 82
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.63 E-value=5.1e-08 Score=72.53 Aligned_cols=61 Identities=25% Similarity=0.349 Sum_probs=58.0
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCC-------CCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI-------KEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i-------~~gs~l~l~~~~ 176 (252)
+.+++.++.||.+||++|+.....|+++|+|+..+..|+|++||++| |+ ++.++|-|.+|+
T Consensus 14 iF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~-g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 14 IFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDC-GFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred EEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHc-CccccccccCCCCeEEEEEec
Confidence 69999999999999999999999999999999778889999999999 99 779999999996
No 83
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.60 E-value=1.6e-07 Score=66.43 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=54.1
Q ss_pred EEEEEeCC-CcEEEEEe-cCCCCHHHHHHHHHHHhC-CCCCCeEEE--EcCeecCCCccccccCCCCCCCEEEE
Q psy1973 2 KISVKVLQ-GQEIFLDV-NSEMSILELKNKINEALK-IPVSDQKLL--ATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~~~-g~~~~~~v-~~~~TV~~lK~~I~~~~g-i~~~~q~L~--~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
.|.++..+ .....+++ +++.||.+||+.|+...+ +++++|+|. +.|+.|.|+.+|.+| |+.+|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~-gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDL-GVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhc-CCCCCCEEEE
Confidence 45555544 33333444 488999999999999976 579999985 789999999999999 9999999876
No 84
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.49 E-value=4.9e-07 Score=68.32 Aligned_cols=66 Identities=27% Similarity=0.422 Sum_probs=50.2
Q ss_pred ccc-cceeeeecCCcccHHHHHHHhhcccC-------CCCCCeEEEEcCeecCCCCCcccccCCCCCC------EEEEEE
Q psy1973 109 SNK-IADEFIKVNSEMSILELKNKINEALK-------IPVSDQKLLATGRPLLDTKQILDYPQIKEGT------KLNLVV 174 (252)
Q Consensus 109 ~g~-~~~~~i~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs------~l~l~~ 174 (252)
+|. + ..+.+++++||.+||+.|...+. ..++..||||.||.|+|+.+|+++ ++..|. ++||++
T Consensus 11 ~G~d~--~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~-~~~~~~~~~~~~vmHlvv 87 (111)
T PF13881_consen 11 DGKDI--GPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDC-RLPSGETPGGPTVMHLVV 87 (111)
T ss_dssp TS-EE--EEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGG-T--TTSETT--EEEEEEE
T ss_pred CCCcc--cccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHh-CCCCCCCCCCCEEEEEEe
Confidence 455 4 37888899999999999987652 136789999999999999999999 998776 689999
Q ss_pred ecC
Q psy1973 175 KRA 177 (252)
Q Consensus 175 ~~~ 177 (252)
+..
T Consensus 88 rp~ 90 (111)
T PF13881_consen 88 RPN 90 (111)
T ss_dssp -SS
T ss_pred cCC
Confidence 873
No 85
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.45 E-value=1.9e-07 Score=67.59 Aligned_cols=61 Identities=26% Similarity=0.398 Sum_probs=50.3
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEc-Ce------ec-CCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLAT-GR------PL-LDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-G~------~L-~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
....+.++.||.+||.+|+...|+|++.|+|.+. .. .+ .|..+|.+| |+++|.+||+.-..
T Consensus 16 ~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y-~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 16 VEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSY-GIKDGMRIHVVDTN 84 (87)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHH-T-STTEEEEEEE-T
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecC-CCCCCCEEEEEeCC
Confidence 4788999999999999999999999999999876 11 23 457799999 99999999998664
No 86
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.42 E-value=5.4e-07 Score=64.13 Aligned_cols=69 Identities=32% Similarity=0.432 Sum_probs=43.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC---eec--CCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG---RPL--LDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G---~~L--~d~~tL~~~~~i~~~s~i~l~ 71 (252)
|-|.|++.+|- +.+++++++|+.+|+++|.+.++++...|.|+.+. ..+ .++.+|+++ |++.|+.|+|.
T Consensus 5 milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~l-glkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSL-GLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT----TT-EEE--
T ss_pred EEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHc-CCCCccEEEEe
Confidence 67888887665 67899999999999999999999999999886432 245 568999999 99999999874
No 87
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.41 E-value=1.9e-06 Score=56.34 Aligned_cols=67 Identities=34% Similarity=0.549 Sum_probs=60.3
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 5 VKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 5 Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+..+|....+.+.++.|+.+||.+|..+.|+++..+.|+++|..+.+...+.++ ++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDY-GLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEe
Confidence 3444688889999999999999999999999999999999999999988888899 999999999864
No 88
>KOG4248|consensus
Probab=98.35 E-value=2.9e-07 Score=90.57 Aligned_cols=71 Identities=25% Similarity=0.544 Sum_probs=63.8
Q ss_pred HHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEecC
Q psy1973 98 KFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 177 (252)
Q Consensus 98 i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~ 177 (252)
+.||++ +.++. ++-+...+||.++|.+|.++.+|+.+.|||||.|++|.|++++.+| +| +|-+|||+-|.+
T Consensus 5 v~vktl-----d~r~~--t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~-~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 5 VLVKTL-----DSRTR--TFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEY-NV-DGKVIHLVERPP 75 (1143)
T ss_pred eeeeec-----cccee--EEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhc-cC-CCeEEEeeccCC
Confidence 456776 45553 7778889999999999999999999999999999999999999999 99 999999999964
No 89
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.28 E-value=5.3e-06 Score=57.04 Aligned_cols=71 Identities=25% Similarity=0.288 Sum_probs=62.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc---Ce--ecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT---GR--PLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~---G~--~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++|+|+-.++..+++.|+|..+|..+|++|....|++- .|+|.|. |+ .|.+..+|++| ||-.+..|.|+-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~y-GiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADY-GIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhh-cceeccEEEEEec
Confidence 58999998889999999999999999999999999985 9999885 33 57899999999 9998877777643
No 90
>PLN02560 enoyl-CoA reductase
Probab=98.26 E-value=4.3e-07 Score=80.59 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=50.9
Q ss_pred eeecCCcccHHHHHHHhhcccCC-CCCCeEEEEc---C----eecCCCCCcccccCCCCCCEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKI-PVSDQKLLAT---G----RPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~~~---G----~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+++++++.||++||++|+++.++ ++++|||.+. | +.|.|+++|++| |+++|++|++-
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~-gv~~gstLy~k 81 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY-GLGDGGTVVFK 81 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhc-CCCCCceEEEE
Confidence 78999999999999999999886 8999999983 3 478999999999 99999987663
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.23 E-value=1.8e-06 Score=61.03 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=47.0
Q ss_pred CCcccHHHHHHHhhcccC-CCCCCeEEE--EcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 120 NSEMSILELKNKINEALK-IPVSDQKLL--ATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 120 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
.++.||.+||..|+...+ ++++.|||. +.|+.|.|+.+|.+| |+++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~-gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDL-GVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhc-CCCCCCEEEE
Confidence 578899999999998876 589999985 899999999999999 9999999876
No 92
>KOG0006|consensus
Probab=98.21 E-value=3.5e-06 Score=73.29 Aligned_cols=75 Identities=15% Similarity=0.348 Sum_probs=64.6
Q ss_pred CEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE-Eeccc
Q psy1973 1 MKISVKVLQ---GQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV-VKRAL 76 (252)
Q Consensus 1 M~i~Vk~~~---g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~-~~~~~ 76 (252)
|.+.|+... ...++++|+.+.+|.+||+.++.+.|+|+++.+++|.||.|.|+.++..+ ++..-+.+|++ ++++.
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~c-DL~qqs~~hi~~lRP~~ 79 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNC-DLSQQSATHIMLLRPWR 79 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecc-cccccchhhhhccCccc
Confidence 677777641 23378899999999999999999999999999999999999999999988 88888888887 66543
No 93
>KOG1872|consensus
Probab=98.15 E-value=5.2e-06 Score=75.91 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=65.7
Q ss_pred EEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 2 KISVKVLQGQEIFLD-VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~-v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.|.||+ .|+.+.++ ++.++|+..||.++...+|++|++|++++.|..+.|+-.+... +|++|.+++|+-..
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al-~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGAL-QIKPNETLMMMGTA 76 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccccccccc-ccCCCCEEEeeccc
Confidence 367777 78889887 9999999999999999999999999999999999999889999 99999999999874
No 94
>KOG3493|consensus
Probab=98.05 E-value=1.9e-06 Score=57.42 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=60.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
++.++..-|+...+..++++||+++|+.|++++|-.++...|---+..++|.-+|++| .|.+|-.+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dy-eihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDY-EIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeE-EeccCccEEEe
Confidence 4666777799999999999999999999999999999988876555678999999999 99999877664
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.02 E-value=1.4e-05 Score=52.06 Aligned_cols=59 Identities=32% Similarity=0.519 Sum_probs=54.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..+.+.++.|+.++|++|..+.|++++.+.|+++|..+.+...+.+| ++.+|+.|++..
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 68 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDY-GLQDGDELVLVP 68 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEe
Confidence 47888899999999999999999999999999999999999988899 999999999864
No 96
>KOG1769|consensus
Probab=97.97 E-value=6.7e-05 Score=54.73 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=65.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++.|+..+|....|.|.-..+...|+...+++.|++-...+++|+|+.+....|-.++ ++.+|+.|.++..
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L-~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADL-EMEDGDEIEVVQE 92 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhh-CCcCCcEEEEEee
Confidence 5667776777889999999999999999999999999999999999999999999999 9999999998875
No 97
>KOG0006|consensus
Probab=97.82 E-value=1.5e-05 Score=69.40 Aligned_cols=66 Identities=14% Similarity=0.347 Sum_probs=59.6
Q ss_pred cccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE-Eec
Q psy1973 110 NKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV-VKR 176 (252)
Q Consensus 110 g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~-~~~ 176 (252)
|..+.++++|+.+.+|.+||+.++.+.|+|+++.++||.||+|.++.++..+ .+...+.+|++ +|+
T Consensus 11 ~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~c-DL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 11 GSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNC-DLSQQSATHIMLLRP 77 (446)
T ss_pred cccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecc-cccccchhhhhccCc
Confidence 3344469999999999999999999999999999999999999999999999 89999999998 454
No 98
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.80 E-value=2e-05 Score=56.08 Aligned_cols=58 Identities=34% Similarity=0.448 Sum_probs=36.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEc---Ceec--CCCCCcccccCCCCCCEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLAT---GRPL--LDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G~~L--~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+.|++++++|+.+|+++|++..++|...|.|..+ ...+ .++.+|+++ ||+.|+.|+|.
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~l-glkHGdmlyL~ 78 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSL-GLKHGDMLYLK 78 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT----TT-EEE--
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHc-CCCCccEEEEe
Confidence 4889999999999999999999999998888542 2244 467799999 99999999874
No 99
>KOG4495|consensus
Probab=97.73 E-value=4.9e-05 Score=54.82 Aligned_cols=62 Identities=31% Similarity=0.461 Sum_probs=52.2
Q ss_pred CEEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-cC-eecCCCccccccCCCC
Q psy1973 1 MKISVKVLQGQE-IFLDVNSEMSILELKNKINEALKIPVSDQKLLA-TG-RPLLDTKQILDYPQIK 63 (252)
Q Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~-~G-~~L~d~~tL~~~~~i~ 63 (252)
|.++++....++ +.++..++.||.+||.+++..+.-|++.|+|+. .. ..|+|.++|+++ |+.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~-gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDC-GFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhc-ccc
Confidence 556776665555 778999999999999999999999999999986 33 468999999999 874
No 100
>KOG4495|consensus
Probab=97.44 E-value=3.6e-05 Score=55.49 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=44.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEE-cC-eecCCCCCcccccCC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLA-TG-RPLLDTKQILDYPQI 164 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G-~~L~d~~tL~~y~~i 164 (252)
+.+++.++.||.+||.+++....-|++.|||+. .- ..|.|+++|+++ |.
T Consensus 14 if~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~-gf 64 (110)
T KOG4495|consen 14 IFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDC-GF 64 (110)
T ss_pred EEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhc-cc
Confidence 699999999999999999999999999999987 33 678999999999 76
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.40 E-value=0.00071 Score=46.07 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=46.7
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEE
Q psy1973 7 VLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
..+++.+.+.+.++.++.++-+...+++|+.+++..|.|+++.|+-+.++.-. |+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~s-nL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLS-NLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH----SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeec-CCCCCCEEeC
Confidence 35788899999999999999999999999999999999999999999999999 9999998865
No 102
>KOG3493|consensus
Probab=97.37 E-value=4.4e-05 Score=50.99 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=54.7
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
-|+- ..+.+++++||+++|..|+.+.|-.++...|--.+..+.|.-+|++| .|.+|..+.|-
T Consensus 10 LGKK--VRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dy-eihdg~~lely 71 (73)
T KOG3493|consen 10 LGKK--VRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDY-EIHDGMNLELY 71 (73)
T ss_pred cCce--EEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeE-EeccCccEEEe
Confidence 4554 49999999999999999999999999988888777888999999999 99999888764
No 103
>KOG1872|consensus
Probab=97.29 E-value=0.00069 Score=62.31 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=57.2
Q ss_pred eeee-cCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIK-VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+. ++.++|+..+|+++....|+||+.|++.+.|..+.|+-.+... .|++|.+|+++...
T Consensus 15 y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al-~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 15 YPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGAL-QIKPNETLMMMGTA 76 (473)
T ss_pred ccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccccccccc-ccCCCCEEEeeccc
Confidence 4666 8899999999999999999999999999999999999888889 99999999999876
No 104
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.28 E-value=0.00088 Score=47.42 Aligned_cols=68 Identities=26% Similarity=0.443 Sum_probs=49.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-EcCeecCCCccccccCCCCCCCEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV---S---DQKLL-ATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~---~---~q~L~-~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
+|+|...+|+.+.+.++.+.+|.+|...|.+..+.+. . ...|. -+|..|+++.+|.++ ||.+|+.+.|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~-gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADA-GVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGG-T--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHc-CCCCCCEEEe
Confidence 4666664568899999999999999999999887643 2 24554 578899999999999 9999999987
No 105
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.05 E-value=0.0018 Score=47.80 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=45.0
Q ss_pred EEEEeCCC-cEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEEcCeecCCCcccccc
Q psy1973 3 ISVKVLQG-QEIFLDVN--SEMSILELKNKINEALK--IPVSDQKLLATGRPLLDTKQILDY 59 (252)
Q Consensus 3 i~Vk~~~g-~~~~~~v~--~~~TV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~ 59 (252)
|+|+..++ ..+.++|+ ...||..||..|.++.+ ..-.+++|+|+|+.|.|+..|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 56676553 23677777 78999999999999983 444667899999999998888766
No 106
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.02 E-value=0.0074 Score=42.72 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=58.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--EcCeecCC--CccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLL--ATGRPLLD--TKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~--~~G~~L~d--~~tL~~~~~i~~~s~i~l~ 71 (252)
.|.||..+|+.+.-.+.+++||.+|...|......+... ..|+ |-.+.+.+ +.+|.+. |+.++++|+|.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~-~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA-GLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC-TTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh-cCCCCeEEEEE
Confidence 688999999999999999999999999999988777654 6775 55677744 3799999 99999998873
No 107
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.99 E-value=0.0018 Score=44.70 Aligned_cols=60 Identities=27% Similarity=0.273 Sum_probs=51.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEc---Ce--ecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLAT---GR--PLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G~--~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+.|+|..+|..+|++|....|++- .|||.|. |+ .|.+..+|++| ||=.+..|.|+-.-
T Consensus 13 l~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~y-GiFs~~~i~lleT~ 77 (80)
T cd01811 13 WILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADY-GIFSKTNICLLETF 77 (80)
T ss_pred eEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhh-cceeccEEEEEecC
Confidence 58899999999999999999999986 8999983 32 46788899999 99988888877553
No 108
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0041 Score=44.50 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=61.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
.+.|-..+|..+.|.|....+...|....+.+.|-.-+..|++|+|+.++-++|-.++ ++.+++.|..+
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dl-dmEdnd~iEav 94 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDL-DMEDNDEIEAV 94 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhc-CCccchHHHHH
Confidence 3556566788899999999999999999999999999999999999999999999999 99998876543
No 109
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.89 E-value=0.0053 Score=43.17 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=51.2
Q ss_pred cCCcccHHHHHHHhhcccC-CCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 119 VNSEMSILELKNKINEALK-IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 119 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
|.++++|.++++-+..... .......|.++|+.|.+...|++++|+++|++|.++.++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5678999999999988765 457788999999999999999999889999999999765
No 110
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.77 E-value=0.0022 Score=43.65 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=43.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
+.+.+.|+.++.++-+....++|+.+++..|.|+++.|.-+.++.-. |+.+|+++.|
T Consensus 9 ~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~s-nL~n~akLeL 65 (65)
T PF11470_consen 9 FKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLS-NLPNNAKLEL 65 (65)
T ss_dssp EEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH----SS-EEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeec-CCCCCCEEeC
Confidence 59999999999999999999999999999999999999999999999 9999999875
No 111
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.75 E-value=0.012 Score=41.63 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=55.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeecCC---CccccccCCCCCCCEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLD---TKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~d---~~tL~~~~~i~~~s~i~l 70 (252)
+|.||..+|+.+.-.++.++||.+|.+.|....+.......|+ |-.+.+.+ +.||.+. |+.+++++.|
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~-gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLEL-ALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHC-CCCCceEEEE
Confidence 5889999999999999999999999999977666666667774 55666743 5799999 9988888776
No 112
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.68 E-value=0.014 Score=46.85 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=48.3
Q ss_pred CEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEE-cCeec--CCCcccccc
Q psy1973 1 MKISVKVLQG----QEIFLDVNSEMSILELKNKINEALKIPVSDQ-KLLA-TGRPL--LDTKQILDY 59 (252)
Q Consensus 1 M~i~Vk~~~g----~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q-~L~~-~G~~L--~d~~tL~~~ 59 (252)
|+|+|++++| .++.+.++++.||.+|+..|....+++...| .|++ .|+.| .++..++.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l 67 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSL 67 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhh
Confidence 7899999999 5788999999999999999999999998885 4554 35555 456666766
No 113
>KOG0013|consensus
Probab=96.64 E-value=0.0036 Score=51.80 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=56.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.++.+.+.+...+|+.++|.++++..|+.+..|+++|+|+.|-|...|..+ ++..|....+-+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc-~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEEC-KIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceee-eecCCCEEEEEEE
Confidence 456678888999999999999999999999999999999999999999999 9999966555443
No 114
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.42 E-value=0.033 Score=38.95 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=52.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeecC---CCccccccCCCCCCCEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL---DTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~---d~~tL~~~~~i~~~s~i~l 70 (252)
+|.||..+|+.+.-.++.++||.+|.+.|.....- .....|+ |-.+.+. .+.||.+. |+. .+.+.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~-gL~-~s~~~~ 74 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEA-GLV-NEVVFQ 74 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHc-CCc-cceEEE
Confidence 58899999999999999999999999999877543 4556665 5566774 47899999 999 455544
No 115
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.37 E-value=0.032 Score=39.40 Aligned_cols=67 Identities=9% Similarity=0.162 Sum_probs=54.5
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeecCC---CccccccCCCCCCCEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLD---TKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~d---~~tL~~~~~i~~~s~i~l 70 (252)
+|.||..+|+.+.-.++.++|+.+|...|....+-. ....|+ |-.+.+.+ +.||.+. |+.+.++|.|
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~el-gL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQEL-GLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHC-CCCCceEEEE
Confidence 588999999999889999999999999998765433 445664 56777743 5899999 9999888876
No 116
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.20 E-value=0.041 Score=38.92 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=52.2
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--EcCeecC-CCccccccCCCCCCCEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIP-VSDQKLL--ATGRPLL-DTKQILDYPQIKEGTKLN 69 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~-~~~q~L~--~~G~~L~-d~~tL~~~~~i~~~s~i~ 69 (252)
+|.||..+|+.+...++.++||.+|.+.|....+-+ .....|. |-.+.|. ++.||.+. |+.+ +.|.
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~ea-gL~~-s~v~ 75 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEA-NLLN-AVIV 75 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHC-CCcC-cEEE
Confidence 588999999999999999999999999999876432 2445664 6677774 47899999 9985 4443
No 117
>KOG0013|consensus
Probab=96.08 E-value=0.0085 Score=49.66 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=56.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
+++. +.+.+..-+||.++|..+....|+.+..|+++|+|+.+.|...|..+ +|..|+.-.+-+.
T Consensus 155 T~~d--~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc-~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TRED--FWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEEC-KIEKGQRYVLQVI 218 (231)
T ss_pred hhhh--eeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceee-eecCCCEEEEEEE
Confidence 4454 68899999999999999999999999999999999999999999999 9999976555444
No 118
>KOG1639|consensus
Probab=96.06 E-value=0.014 Score=49.66 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=53.8
Q ss_pred CEEEEEeCCCcE-EE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEEE----EcCeecCCCccccccCCCCCCCEEEE
Q psy1973 1 MKISVKVLQGQE-IF-LDVNSEMSILELKNKINEA-LKIPVSDQKLL----ATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 1 M~i~Vk~~~g~~-~~-~~v~~~~TV~~lK~~I~~~-~gi~~~~q~L~----~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
|.|++.+.++.. .+ .+.+...|+.|+++++.++ ..+.+..+++. -+|++|-|+.+|++| +..+|+++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~-~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEY-GDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHh-ccCCCCEEEE
Confidence 789998877643 33 5677889999999887766 46777555543 469999999999999 9998877765
No 119
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.97 E-value=0.0087 Score=44.10 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=38.0
Q ss_pred eeecC--CcccHHHHHHHhhcccC--CCCCCeEEEEcCeecCCCCCcccc
Q psy1973 116 FIKVN--SEMSILELKNKINEALK--IPVSDQKLLATGRPLLDTKQILDY 161 (252)
Q Consensus 116 ~i~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~y 161 (252)
.+++. .+.||..||++|.+..+ ..-..+||||+|+.|.|...|+.-
T Consensus 15 ~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 15 PLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred eeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 55555 78999999999999873 345688999999999999887766
No 120
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.96 E-value=0.08 Score=37.72 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=58.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeec---CCCccccccCCCCCCCEEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPL---LDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L---~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|.||..+|+...-.+..++++.+|-..|.. .|.+++...|+ |--+.+ +.+.||.+. |+.+..+|.+--
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~-GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHc-CCCCCcEEEEec
Confidence 6899999999999999999999999999998 57788888886 445555 346899999 999999988743
No 121
>KOG1769|consensus
Probab=95.85 E-value=0.034 Score=40.74 Aligned_cols=65 Identities=14% Similarity=0.333 Sum_probs=58.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.+.+ ..+.|..+.+..-|...-+++.|++.++.|++|+|+.+....|-.+. +.++|+.|.++...
T Consensus 29 d~~~--~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L-~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 29 DGSV--VVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADL-EMEDGDEIEVVQEQ 93 (99)
T ss_pred CCCE--EEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhh-CCcCCcEEEEEeec
Confidence 4454 37888899999999999999999999999999999999999999999 99999999988754
No 122
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.84 E-value=0.018 Score=40.43 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=49.9
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 17 VNSEMSILELKNKINEALK-IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 17 v~~~~TV~~lK~~I~~~~g-i~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|++.++|.++++.+..... ..-....|.++|..|++...|++++|+++|.++.|+..+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5788999999999988754 445667889999999999999999889999999998775
No 123
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.63 E-value=0.088 Score=36.42 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=54.0
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEEcCeecCCCccccccCCCCCCCEEEE
Q psy1973 5 VKVLQGQEIFLDVNSEMSILELKNKINEALKIPV-----SDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 5 Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~-----~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
++..+|.++.+.++...++..|-..+.+...+.. ++.+..-+++.|.++..|.+| +|.+|+.+.+
T Consensus 11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~-~IadGD~Lei 80 (81)
T COG5417 11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDY-QIADGDILEI 80 (81)
T ss_pred eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEec-cccCCCEEEe
Confidence 3666799999999999999999888887765432 445778889999999999999 9999998765
No 124
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.46 E-value=0.16 Score=36.47 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=54.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc--CeecC--------CCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT--GRPLL--------DTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~--G~~L~--------d~~tL~~~~~i~~~s~i~l~ 71 (252)
+|.||..+|..+.-.+..++||.+|...|... +..+....|+++ -+.+. .+.||.+. |+.+..+|.+.
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea-GL~~s~~L~V~ 83 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA-GLSNSEVLFVQ 83 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHc-CCCCccEEEEe
Confidence 68899999999888999999999999999754 455677888754 36664 36799999 99988777653
No 125
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.27 E-value=0.18 Score=35.67 Aligned_cols=68 Identities=21% Similarity=0.236 Sum_probs=56.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeecC---CCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL---DTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~---d~~tL~~~~~i~~~s~i~l~ 71 (252)
+|.||..+|....-.+..++++.+|-..|... |.++...+|+ |--+.+. .+.||.+. |+....+|.+-
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~-gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLEL-KLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHc-CCCCCcEEEEE
Confidence 68899999999888999999999999999875 7777788885 5566663 36799999 99988888763
No 126
>KOG3206|consensus
Probab=95.19 E-value=0.076 Score=44.04 Aligned_cols=59 Identities=14% Similarity=0.306 Sum_probs=49.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EEcC-----eec-CCCccccccCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKL-LATG-----RPL-LDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L-~~~G-----~~L-~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.-..+++.||.+||.+++-.+|.+++.+.| +|.| ..| +++..|..| ...+|-.||++-.
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~-~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFY-KVEDGLRIHVIDS 81 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCccccccc-CCCCceEEEEEec
Confidence 345788999999999999999999999988 5665 145 457899999 9999999998765
No 127
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.09 E-value=0.47 Score=32.99 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=50.4
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEE----cCe--ecCCCccccccCCCC--CCCEEEEEE
Q psy1973 5 VKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLA----TGR--PLLDTKQILDYPQIK--EGTKLNLVV 72 (252)
Q Consensus 5 Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~----~G~--~L~d~~tL~~~~~i~--~~s~i~l~~ 72 (252)
|+.++|...++.++++.|+.++-+.|.++.|+...+ .-|.| +|. -|+.+++|.++ ... ...++++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q-~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQ-LKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGS-TBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHH-cCCCCCCEEEEEEE
Confidence 678899999999999999999999999999987543 46777 232 36888999999 666 333444443
No 128
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.06 E-value=0.039 Score=38.89 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=42.2
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCC---C---CeEEE-EcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPV---S---DQKLL-ATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~---~---~q~L~-~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+.+.+..+.+|.+|...|.+..+.+. . ..+|. -+|..|.++.+|+++ ||.+|+.|+|.
T Consensus 15 ~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~-gV~dGd~L~L~ 79 (79)
T PF08817_consen 15 VDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADA-GVRDGDVLVLR 79 (79)
T ss_dssp EEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGG-T--TT-EEEE-
T ss_pred EEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHc-CCCCCCEEEeC
Confidence 47888889999999999988877642 2 24555 579999999999999 99999999873
No 129
>PRK06437 hypothetical protein; Provisional
Probab=93.43 E-value=0.82 Score=31.11 Aligned_cols=62 Identities=15% Similarity=0.321 Sum_probs=47.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|.-+++..+++...++++...||.+|-+. .|+++....+..+|..+. .++ -+++|+.|.++.
T Consensus 1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~-~L~dgD~Veiv~ 62 (67)
T PRK06437 1 MIAMIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDH-NVKKEDDVLILE 62 (67)
T ss_pred CcceEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----Cce-EcCCCCEEEEEe
Confidence 33345554566688889889999988766 589888888889999886 566 688899988764
No 130
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.12 E-value=0.35 Score=34.45 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=44.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+...++-..++..||..++.+.++.-+...++.....|+++++|.+. +++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQ-cVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQ-CVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTS-S----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHh-hccccCEEEEEEE
Confidence 44556778899999999999999999999999999889999999999 9999999998876
No 131
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.00 E-value=0.31 Score=41.09 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=61.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EEcCe---ecCCCccccccCCCCCCCEEEEEEecccccccccc
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVS---DQKL--LATGR---PLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSV 83 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~---~q~L--~~~G~---~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~~~~~~ 83 (252)
.+.+-|+.+.||.||.+.+..+.+++.+ ..+| +++++ .+..+..+... .+...+.+-.-+ ..+ ...
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l---~~~~~~r~E~ip--~ee-~~~ 108 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL---NDYITLRIEEIP--EEE-LNL 108 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS-----TTEEEEEE----GGG-SS-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc---cCcceeeeecCC--hHH-hhc
Confidence 3677899999999999999999999765 3444 36676 35667777755 333344433222 111 011
Q ss_pred c-CCCCcchhhhhHHHHHHHhhcc---ccccccceeeeecCCcccHHHHHHHhhcccCCC---CCCeEEE--EcC-----
Q psy1973 84 A-GGSNVTILRDASYKFLRKYFTE---TQSNKIADEFIKVNSEMSILELKNKINEALKIP---VSDQKLL--ATG----- 149 (252)
Q Consensus 84 ~-~~~~~~~l~~~m~i~vk~~~~~---~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip---~~~q~L~--~~G----- 149 (252)
. ...... .|. ..++.. ...|-. |.+.|.+++|..++|++|+.+.|++ .+..++. ..+
T Consensus 109 ~~~~~~~~------li~-V~hf~k~~~~~hGiP--F~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~ 179 (213)
T PF14533_consen 109 DDESEGEK------LIP-VFHFHKDPSRTHGIP--FLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKP 179 (213)
T ss_dssp -TT--TEE------EEE-EEEESSSTT-EEEEE--EEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---
T ss_pred ccccccce------EEE-EEEEecCccccCCCC--EEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccc
Confidence 1 000000 000 000100 113444 7899999999999999999999997 3444543 344
Q ss_pred eecCCCC--Ccccc
Q psy1973 150 RPLLDTK--QILDY 161 (252)
Q Consensus 150 ~~L~d~~--tL~~y 161 (252)
..+.|+. .|.+.
T Consensus 180 ~yl~d~~~~il~~~ 193 (213)
T PF14533_consen 180 RYLEDDDDLILFDE 193 (213)
T ss_dssp EE--TT-T----GG
T ss_pred eeccccchhhhhhh
Confidence 3455553 44444
No 132
>KOG3206|consensus
Probab=92.73 E-value=1.6 Score=36.47 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=50.4
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEE-EcC-----eecCC-CCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLL-ATG-----RPLLD-TKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~d-~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+..++.||.++|.+++-..|.+++.++|. |.| -.|.| +..|..| +..+|-.||++-..
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~-~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFY-KVEDGLRIHVIDSN 82 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCccccccc-CCCCceEEEEEecC
Confidence 4556689999999999999999999999985 665 24554 5589999 99999999999765
No 133
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=91.97 E-value=0.38 Score=33.77 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=49.7
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCC-eEEE--EcCeecCCC--CCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSD-QKLL--ATGRPLLDT--KQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~G~~L~d~--~tL~~y~~i~~gs~l~l~ 173 (252)
.|+. +.-....++||.+|..-|......+... ..|+ |-.+.+.+. .+|.+. |+.++++|+|.
T Consensus 15 dG~~--l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~-~l~p~~~l~v~ 81 (82)
T PF00789_consen 15 DGSR--LQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA-GLLPSATLIVE 81 (82)
T ss_dssp TSTE--EEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC-TTSSCEEEEEE
T ss_pred CCCE--EEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh-cCCCCeEEEEE
Confidence 4554 3777889999999999999887776654 7776 667777655 599999 99999999874
No 134
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.91 E-value=0.71 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=34.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVS 39 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~ 39 (252)
.+.++...|+.+.|.+.++..+.+|++.|.++.|+...
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 46788899999999999999999999999999999874
No 135
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.75 E-value=0.7 Score=32.68 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=34.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCe
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR 48 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~ 48 (252)
++.+.|.++.+..+|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8889999999999999999999999999889988753
No 136
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=91.23 E-value=0.76 Score=33.64 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=28.5
Q ss_pred EEEEcCeecCCCCCcccccCCCCCCEEEEEEecCcc
Q psy1973 144 KLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALK 179 (252)
Q Consensus 144 ~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~~~ 179 (252)
.|-|.|++|..+.+|++| |..+....++++....
T Consensus 3 ~LW~aGK~l~~~k~l~dy--~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY--IGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCcHHHh--cCCCcceeEEEEeccC
Confidence 578999999999999999 8788888888887433
No 137
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=91.05 E-value=1.1 Score=29.55 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+|.. + .+++..+.|+.+||.++.. +.-.++|+|-+..++. -+++|+.|.+.-
T Consensus 1 M~I~vN~---k--~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~------~L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVNE---K--EIETEENTTLFELRKESKP------DADIVILNGFPTKEDI------ELKEGDEVFLIK 55 (57)
T ss_pred CEEEECC---E--EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCcc------ccCCCCEEEEEe
Confidence 7777743 3 6778889999999988543 2237799998776555 455667777654
No 138
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.80 E-value=0.79 Score=32.14 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=48.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecCC---CCCcccccCCCCCCEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLD---TKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~y~~i~~gs~l~l 172 (252)
.|+. +......++||.+|.+-|....+.......|+ |-.+.+.+ +.||.+. |+.++++|.+
T Consensus 13 dG~r--i~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~-gL~p~~~l~v 78 (80)
T smart00166 13 DGSR--LVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLEL-ALLPSSTLVL 78 (80)
T ss_pred CCCE--EEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHC-CCCCceEEEE
Confidence 4554 37788899999999999976666666677776 66777764 4699999 9999998876
No 139
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.50 E-value=2.4 Score=28.33 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=43.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+. +++..+.||.++-.. .++++..-.+.++|..+....- .+. -+++|+.|-+.-
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~-~~~-~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQH-AST-ALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHc-Ccc-cCCCCCEEEEEE
Confidence 66666 5564 466678898877765 6888888888899987765443 333 488999988764
No 140
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=89.49 E-value=2.2 Score=30.29 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=35.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEEc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV-SDQKLLAT 46 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~-~~q~L~~~ 46 (252)
|+|.+.. +|..+.+.+.++.+..+|++.|.+++++.. ....|-|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 5666654 778899999999999999999999999864 44555553
No 141
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.33 E-value=3.7 Score=28.00 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=39.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...++++.+.||.+|-+.+ ++++..-.+..+|..+. .+. -+++|+.|.+..
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~-~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDD-PVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCc-CcCCCCEEEEEc
Confidence 4677888889999888764 77776667788998874 355 678889888754
No 142
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=88.97 E-value=3.1 Score=28.77 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=39.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG 47 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G 47 (252)
+.|-..+|+.-.+.+.++.||.++-.++.++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778899999999999999999999999999999888776654
No 143
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=88.95 E-value=2.5 Score=29.35 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=36.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT 46 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~ 46 (252)
.|.++. +|....+.++++.|..+|+.+|..+++++.....|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 456655 67788999999999999999999999987666666665
No 144
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=88.91 E-value=0.85 Score=32.50 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=43.4
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
...++-..++..||..++.+.++..+...+...+..|+.+++|.+- +|+-...+.+.+.-
T Consensus 6 ~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQ-cVqgeGlVQlnvQi 65 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQ-CVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTS-S----SEEEEEEEE
T ss_pred EEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHh-hccccCEEEEEEEE
Confidence 4455557788999999999999999999999999889999999999 99999999888764
No 145
>smart00455 RBD Raf-like Ras-binding domain.
Probab=88.90 E-value=3.6 Score=28.21 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=42.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC--eecCCCc
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG--RPLLDTK 54 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G--~~L~d~~ 54 (252)
+.|-..+|+...+.+.|+.|+.++-..+.++.|+.++.-.++..| +.|+-+.
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 356677899999999999999999999999999999888888755 3454333
No 146
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=88.49 E-value=1.1 Score=38.64 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=76.9
Q ss_pred EEEEeCCC--cEE----EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc----Ce--ecCCCccccccCCCCCCCEEEE
Q psy1973 3 ISVKVLQG--QEI----FLDVNSEMSILELKNKINEALKIPVSDQKLLAT----GR--PLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 3 i~Vk~~~g--~~~----~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~----G~--~L~d~~tL~~~~~i~~~s~i~l 70 (252)
||+|..+- +++ .+-|+.+++|.++-..|.++.|+|++..-++|. ++ .++...++... .+.+|+.|.+
T Consensus 71 lFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~-el~~GdIi~f 149 (249)
T PF12436_consen 71 LFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKA-ELQDGDIICF 149 (249)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHT-T--TTEEEEE
T ss_pred EEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhc-ccCCCCEEEE
Confidence 56665542 222 246889999999999999999999987776664 33 57889999999 9999999988
Q ss_pred EEecccccccccccCCCCcchhhhhHHHHHHHh----hcc--ccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeE
Q psy1973 71 VVKRALKESSQSVAGGSNVTILRDASYKFLRKY----FTE--TQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQK 144 (252)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~m~i~vk~~----~~~--~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~ 144 (252)
-..... ........+. ..+ ..-++... +.. .+.+. .|.+.++...|-.+|-++|++..|+.+...|
T Consensus 150 Q~~~~~--~~~~~~~~~~---v~~-Yy~~l~nrv~V~f~~~~~~~~~--~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr 221 (249)
T PF12436_consen 150 QRAPSE--DLDKSSRYPD---VKE-YYDFLYNRVEVEFKPKDNPNDP--EFTLWLSKKMTYDQLAEKVAEHLNVDPEHLR 221 (249)
T ss_dssp EE--GG----GGGSSS-S---HHH-HHHHHHHEEEEEEEETTSTT-----EEEEEETT--HHHHHHHHHHHHTS-GGGEE
T ss_pred Eecccc--ccccccCCCC---HHH-HHHHHhCeEEEEEEECCCCCCC--CEEEEECCCCCHHHHHHHHHHHHCCChHHEE
Confidence 775311 0000011110 111 11111111 111 11222 3789999999999999999999999999888
Q ss_pred EEE
Q psy1973 145 LLA 147 (252)
Q Consensus 145 L~~ 147 (252)
|.-
T Consensus 222 ~~~ 224 (249)
T PF12436_consen 222 FFT 224 (249)
T ss_dssp EE-
T ss_pred EEE
Confidence 763
No 147
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=88.42 E-value=0.5 Score=37.96 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=43.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCe-EEEE-cCeec--CCCCCcccccCCCCC----CEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQ-KLLA-TGRPL--LDTKQILDYPQIKEG----TKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~-~G~~L--~d~~tL~~y~~i~~g----s~l~l~~~~ 176 (252)
+.+.+..+.||.+|+..|....+++...| .|.+ .|+.| .++..++.+ .-.+. .+++|.++.
T Consensus 17 l~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l-~~~~~~~~~~~l~l~~rl 85 (162)
T PF13019_consen 17 LSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSL-LSSSQDSDFITLRLSLRL 85 (162)
T ss_pred EEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhh-ccCcCCCCceEEEEEEec
Confidence 58888899999999999999999998874 4554 34455 445566766 33333 356777765
No 148
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=0.89 Score=32.73 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=54.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
.|.. +.+.+..+.+...|-...+.+.|-..+..|++|+|+.+.-++|-.++ +..++..|..+
T Consensus 33 d~te--lfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dl-dmEdnd~iEav 94 (103)
T COG5227 33 DGTE--LFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDL-DMEDNDEIEAV 94 (103)
T ss_pred CCCE--EEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhc-CCccchHHHHH
Confidence 4444 48888999999999999999999999999999999999999999999 99988876443
No 149
>COG5417 Uncharacterized small protein [Function unknown]
Probab=88.24 E-value=1.4 Score=30.59 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=47.9
Q ss_pred eeeecCCcccHHHHHHHhhcccCCC-----CCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIP-----VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip-----~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
+-+.++.-.+|..+-..+.+...+. -++.|..-+++.|.++..|.+| +|.+|+.+.+
T Consensus 19 yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~-~IadGD~Lei 80 (81)
T COG5417 19 YDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDY-QIADGDILEI 80 (81)
T ss_pred EEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEec-cccCCCEEEe
Confidence 5888888889998888887776552 3567788899999999999999 9999999865
No 150
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=88.10 E-value=4.4 Score=29.22 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=42.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE--c--Ce-ecC-CCccccccCCCCCCCEEEEEEe
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVSDQKLLA--T--GR-PLL-DTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~--~--G~-~L~-d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.++..++..+||..+...+.+.+.| ...-||.- . +. .|. .+.|+.+. ++.+|.+|.+-.+
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da-~L~~gQ~vliE~r 80 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDA-GLYDGQVVLIEER 80 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTT-T--TTEEEEEEE-
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHc-cCcCCCEEEEEee
Confidence 4677889999999999999999999 56677742 2 22 464 46899999 9999998888766
No 151
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.74 E-value=1.9 Score=30.26 Aligned_cols=60 Identities=5% Similarity=0.007 Sum_probs=46.4
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecCC---CCCcccccCCCCCCEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLD---TKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~y~~i~~gs~l~l 172 (252)
.|+. +.-....++|+.+|.+-|....+.+ ....|+ |-.+.+.+ +.||.+. |+.+.++|.|
T Consensus 13 ~G~~--~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~el-gL~Psa~L~v 77 (79)
T cd01772 13 DGTT--LKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQEL-GLVPSAVLIV 77 (79)
T ss_pred CCCE--EEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHC-CCCCceEEEE
Confidence 4554 3667788999999999998765443 556676 67888864 4699999 9999999876
No 152
>KOG0012|consensus
Probab=87.34 E-value=1 Score=40.55 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=59.9
Q ss_pred CEEEEEeC--CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCC--CccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVL--QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLD--TKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~--~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d--~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|.++|.+. .-+.+.+.+..+-....++..++..+|+..+..-|+|+++++.. ...+..+ |+..++++.+-.+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~-g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQI-GLKDGDSLALRCK 76 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhc-ccccceeEeccCC
Confidence 56666544 44558889999999999999999999999999999999999855 5789999 9999999877544
No 153
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=87.05 E-value=4.7 Score=26.89 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=41.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+.+.+ + ..|+.+|...+ ++++....+-.+|..+. .....+. -+++|+.|-+.-
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~-~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQF-VLHEGDRIEILS 60 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCcc-ccCCCCEEEEEE
Confidence 66666 6676665 3 46899888764 67765566778888775 2334556 688999988764
No 154
>KOG4583|consensus
Probab=86.89 E-value=0.29 Score=43.55 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=44.3
Q ss_pred EEEEEeCCCcE--EEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEEcCeecCCCcccccc
Q psy1973 2 KISVKVLQGQE--IFLDVNSEMSILELKNKINEALKI--PVSDQKLLATGRPLLDTKQILDY 59 (252)
Q Consensus 2 ~i~Vk~~~g~~--~~~~v~~~~TV~~lK~~I~~~~gi--~~~~q~L~~~G~~L~d~~tL~~~ 59 (252)
.+.+|+.+.+- ..|..+..-||++||..+...+-- -..+|||+|.|+.|.|...|.+.
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 45677766654 445556678999999999887632 23679999999999999888876
No 155
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=86.31 E-value=3.6 Score=27.73 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=52.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHh---CCCCCCeEEE-EcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 8 LQGQEIFLDVNSEMSILELKNKINEAL---KIPVSDQKLL-ATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~---gi~~~~q~L~-~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.+|+...++.+.+..+--+..+--+.+ |-|++...|- -+|..|+-++.+.+| |+.++-++.|.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~-GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDF-GFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhc-cccccceEEEEee
Confidence 367888888888888777776665554 4677777664 468888999999999 9999999999887
No 156
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=86.28 E-value=4.1 Score=28.47 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=44.3
Q ss_pred CEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHh-CCCC--CCeEEEEcCeecCCCccccccCCCCCCCEEEE
Q psy1973 1 MKISVKVLQ------G-QEIFLDVNSEMSILELKNKINEAL-KIPV--SDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 1 M~i~Vk~~~------g-~~~~~~v~~~~TV~~lK~~I~~~~-gi~~--~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
|+|+|+.+. | ....++++.+.||.+|.+.+..+. ++.. ..-.+..+|+... .++ -+++|+.|.+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~-~l~dgDeVai 75 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESA-ALKDGDELAI 75 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCc-CcCCCCEEEE
Confidence 677887764 4 446778888999999999997765 1111 1123567777653 345 5788999887
Q ss_pred EE
Q psy1973 71 VV 72 (252)
Q Consensus 71 ~~ 72 (252)
..
T Consensus 76 ~P 77 (82)
T PLN02799 76 IP 77 (82)
T ss_pred eC
Confidence 54
No 157
>KOG4583|consensus
Probab=85.93 E-value=0.23 Score=44.23 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=40.0
Q ss_pred eeeecCCcccHHHHHHHhhcccC-CC-CCCeEEEEcCeecCCCCCcccc
Q psy1973 115 EFIKVNSEMSILELKNKINEALK-IP-VSDQKLLATGRPLLDTKQILDY 161 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~g-ip-~~~q~L~~~G~~L~d~~tL~~y 161 (252)
..|..+..-||++||..++...- -| ..+|||+|.||.|.|...|.+.
T Consensus 24 l~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 24 LSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred eeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 37778889999999999988753 34 5689999999999999998887
No 158
>KOG1639|consensus
Probab=85.74 E-value=0.89 Score=38.98 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=42.7
Q ss_pred eeecCCcccHHHHHHHhhcc-cCCCCCCeEEE----EcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEA-LKIPVSDQKLL----ATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~-~gip~~~q~L~----~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
....+...|+.+++..+..+ ..+-+..+|+. -+|+.|.|+.+|++| +..+|++|.+
T Consensus 16 ~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~-~~~s~~~i~v 76 (297)
T KOG1639|consen 16 EKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEY-GDGSGATIYV 76 (297)
T ss_pred eecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHh-ccCCCCEEEE
Confidence 36677889999999666554 56655444433 479999999999999 9999977755
No 159
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.40 E-value=3.3 Score=28.67 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=43.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecCC---CCCcccccCCCCCCEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLD---TKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~y~~i~~gs~l~l 172 (252)
.|+. +.-....++||.+|.+-|.....- .....|+ |-.+.+.+ +.||.+. |+.+ +.+.+
T Consensus 11 dG~~--~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~-gL~~-s~~~~ 74 (77)
T cd01767 11 DGKR--LEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEA-GLVN-EVVFQ 74 (77)
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHc-CCcc-ceEEE
Confidence 4554 377788999999999999876543 4556676 56777765 6799999 9994 44444
No 160
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=85.29 E-value=0.26 Score=43.51 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEEcCeecCCCcccccc
Q psy1973 3 ISVKVLQGQEIFLDVN---S--EMSILELKNKINE----------ALKIPVSDQK-----LLATGRPLLDTKQILDY 59 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~---~--~~TV~~lK~~I~~----------~~gi~~~~q~-----L~~~G~~L~d~~tL~~~ 59 (252)
|.+|......+.+.+. + +.||.++|..+++ .+++|.+..+ |+|+-+++.|.++|.+.
T Consensus 81 V~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 81 VHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 4555555554444332 2 6899999999999 8999999999 99999999999999988
No 161
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=85.03 E-value=6.1 Score=27.16 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=41.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKI----PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi----~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...++++.+.||.+|.+.+..+++- ......+..+|+... .+. -+++|+.|.+..
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~-~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDT-PLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCc-ccCCCCEEEEeC
Confidence 3567787789999999999988642 233456678888776 456 688999998764
No 162
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=84.74 E-value=7.3 Score=27.97 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=33.9
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC
Q psy1973 3 ISVKVL-QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG 47 (252)
Q Consensus 3 i~Vk~~-~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G 47 (252)
|.||.. +|....+.|+++.+..+|..+|..++++. ....+-|..
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD 47 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD 47 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 344443 78889999999999999999999999985 344554544
No 163
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.48 E-value=2.7 Score=29.52 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=44.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCC-CCCCeEEE--EcCeecCC-CCCcccccCCCCCCEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKI-PVSDQKLL--ATGRPLLD-TKQILDYPQIKEGTKL 170 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~--~~G~~L~d-~~tL~~y~~i~~gs~l 170 (252)
.|+. +.-.++.++||.+|.+-|....+- ......|. |-.+.|.| +.||.+. |+.+.+.+
T Consensus 13 dG~r--~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~ea-gL~~s~v~ 75 (79)
T cd01770 13 DGKR--LVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEA-NLLNAVIV 75 (79)
T ss_pred CCCE--EEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHC-CCcCcEEE
Confidence 4654 377888999999999999876543 23566776 67888876 5599999 99875544
No 164
>KOG4250|consensus
Probab=84.40 E-value=4.6 Score=39.71 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=36.6
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTK 156 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~ 156 (252)
+.+-++++.|+..++..|....|+|...|-|+|.|.......
T Consensus 327 ~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~ 368 (732)
T KOG4250|consen 327 HEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLED 368 (732)
T ss_pred EEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCc
Confidence 488899999999999999999999999999999977544333
No 165
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.11 E-value=11 Score=30.58 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=51.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEc---C---eecCCCccccccCCCC-CCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLAT---G---RPLLDTKQILDYPQIK-EGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~~---G---~~L~d~~tL~~~~~i~-~~s~i~l~~~ 73 (252)
.+.|...+|....+.+++..|+.++-..+..+.|++... .-|++- + ..|+...++.+. ... ....+++..+
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~l~fr~r 83 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQ-DVKSEPLTLYFRVK 83 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHh-cCCCCCcEEEEEEE
Confidence 578889999999999999999999999999999995422 234332 1 246667777777 544 2345555544
No 166
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=83.99 E-value=11 Score=25.77 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=42.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC--eecCCCcccccc
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG--RPLLDTKQILDY 59 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G--~~L~d~~tL~~~ 59 (252)
+.|-..+|+...+.+.++.||.++-.++.++.|+.+..-.++..| +.|+-+...+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeee
Confidence 466778899999999999999999999999999999877665443 456666666555
No 167
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=83.38 E-value=11 Score=24.99 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=39.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+. +++....|+.++.+.+ +++ ....+.++|..+.... -.+. -+++|+.|.+..
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~-~L~~gD~vei~~ 60 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAAR-ALAAGDRLDLVQ 60 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccc-cCCCCCEEEEEe
Confidence 56666 5554 4566788999888764 444 3356678888765433 2334 478999998764
No 168
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.27 E-value=5 Score=28.64 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=46.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC--eecC--------CCCCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATG--RPLL--------DTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G--~~L~--------d~~tL~~y~~i~~gs~l~l~ 173 (252)
.|+. ..-....++||++|..-|... +..+....|+.+= +.+. .+.||.+. |+.+.++|.+-
T Consensus 13 ~G~R--l~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea-GL~~s~~L~V~ 83 (85)
T cd01774 13 NGTR--VERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA-GLSNSEVLFVQ 83 (85)
T ss_pred CCCE--EEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHc-CCCCccEEEEe
Confidence 4554 366777899999999999754 4455788998654 7775 35699999 99999988763
No 169
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=82.02 E-value=7.5 Score=26.75 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=34.0
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEEc
Q psy1973 2 KISVKVLQGQEIFLDVN-SEMSILELKNKINEALKIPVSDQKLLAT 46 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~-~~~TV~~lK~~I~~~~gi~~~~q~L~~~ 46 (252)
.|.++. +|....+.+. .+.|..+|+.+|.++++++.....+.|.
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 456655 4677888888 8999999999999999988644555554
No 170
>KOG2982|consensus
Probab=81.65 E-value=1.9 Score=38.48 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=44.6
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCeEEEE---cCee-----cCCCccccccCCCCCCCEEEEE
Q psy1973 16 DVNSEMSILELKNKINEALKIPVSDQKLLA---TGRP-----LLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 16 ~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~---~G~~-----L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
-|.-.-||.|||..+..+.|+.+.+++|+| +|+. .+.++.|..| +|++|+.+.+-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~f-kIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYF-KIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEE-eccCCCEeeee
Confidence 345567999999999999999999999987 3442 3457889999 99999988764
No 171
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=80.45 E-value=15 Score=24.62 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=41.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+.+ ++....||.+|.+. .++....-.+-.++..+..+ .-..+ -+++|+.|.+.-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~-~w~~~-~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILF---NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPRE-QWAQH-IVQDGDQILLFQ 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeChH-HcCcc-ccCCCCEEEEEE
Confidence 66766 55654 45677899988865 46665566777899877432 23444 478899988764
No 172
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=80.37 E-value=3.6 Score=29.11 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=33.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCe
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGR 150 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~ 150 (252)
+.|.+.++.+..+|.++|.++.++|++...|.|+..
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 589999999999999999999999999999999764
No 173
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=79.50 E-value=8.2 Score=26.76 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=35.0
Q ss_pred EEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc
Q psy1973 2 KISVKVLQGQEIF-LDVNSEMSILELKNKINEALKIPVSDQKLLAT 46 (252)
Q Consensus 2 ~i~Vk~~~g~~~~-~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~ 46 (252)
.|.+.. +|.... +.+..+.|..+|+.+|..+++.+.....|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 3 RVKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 345544 445555 89999999999999999999999777788775
No 174
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=79.26 E-value=11 Score=24.88 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=37.7
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.+++..+.|..+||.++... .--++|+|-+..+ ++ -+++|+.|.++-|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~-----d~-~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKE-----DI-ELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCC-----cc-ccCCCCEEEEEeC
Confidence 77888899999999987653 2378999988776 56 6788888887754
No 175
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=78.78 E-value=8 Score=26.55 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=40.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCC----CCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKI----PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gi----p~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..+++....||.+|.+.+....+- ......+..+|+... .++ -+++|+.|.++-
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~-~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDT-PLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCc-ccCCCCEEEEeC
Confidence 477777889999999999887542 234556667888776 467 699999998874
No 176
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=78.44 E-value=7.6 Score=27.99 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=41.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEE----cCe-ecCC-CCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLA----TGR-PLLD-TKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~G~-~L~d-~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
++..++..|||..++..+.+.+.| ...-||-- ++. .|.+ +.|+.+. +|.+|-.|-+-.|.
T Consensus 16 ~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da-~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 16 LTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDA-GLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTT-T--TTEEEEEEE--
T ss_pred hHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHc-cCcCCCEEEEEeec
Confidence 477889999999999999999999 66678753 222 2544 4599999 99999999888876
No 177
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=78.06 E-value=8.8 Score=27.27 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=49.4
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecCC---CCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLD---TKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~y~~i~~gs~l~l~~ 174 (252)
+|+.+ .-....++++.+|-.-|.. .|.+++...|+ |--+.+.. +.||.+. |+.+.++|.|--
T Consensus 14 ~G~r~--~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~-GL~P~~~LfVq~ 80 (82)
T cd01773 14 DGKRE--QIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFVQE 80 (82)
T ss_pred CCCEE--EEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHc-CCCCCcEEEEec
Confidence 56653 6677788999999999998 57788889987 66777643 4699999 999999998743
No 178
>PRK06437 hypothetical protein; Provisional
Probab=77.91 E-value=13 Score=25.16 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=39.8
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....||.+|-+. .|+++....+..+|..+. .++ -+++|+.|.++-
T Consensus 14 ~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~-~L~dgD~Veiv~ 62 (67)
T PRK06437 14 TIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDH-NVKKEDDVLILE 62 (67)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----Cce-EcCCCCEEEEEe
Confidence 6777788899888765 478888888889999987 567 699999998874
No 179
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=77.83 E-value=14 Score=24.62 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=41.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+.+ ++..+.|+.+|-+. .++++..-.+.++|..+..+.- ..+ +++|+.|-+.-
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~--L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV---NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK--LRDGARLEVVT 60 (65)
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh--cCCCCEEEEEe
Confidence 66666 55644 45567888877665 6888888888999987743321 224 68999988764
No 180
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=77.59 E-value=18 Score=24.42 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=41.9
Q ss_pred CEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSE-MSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~-~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+.+ ++... .||.+|-+. .++++..--+-++|..+..+. ...+ -+++|+.|.++-
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~~-w~~~-~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKDD-HTDT-SVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHHH-cCce-ecCCCCEEEEEE
Confidence 66666 56654 44454 578877654 688888777889998875433 4455 588999988764
No 181
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.01 E-value=2.6 Score=40.43 Aligned_cols=61 Identities=31% Similarity=0.413 Sum_probs=41.5
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCC------CCCeEEEEc----Ce-ecCCC-------------CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIP------VSDQKLLAT----GR-PLLDT-------------KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~~----G~-~L~d~-------------~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .+.| +++.-|-+. |+ .|.|. +||..| +|.+|+
T Consensus 204 i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~dga 282 (539)
T PF08337_consen 204 IPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHY-KVPDGA 282 (539)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHH-T--TTE
T ss_pred EEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhc-CCCCCc
Confidence 488999999999999999554 2443 344555431 23 45543 589999 999999
Q ss_pred EEEEEEec
Q psy1973 169 KLNLVVKR 176 (252)
Q Consensus 169 ~l~l~~~~ 176 (252)
++.|+.+.
T Consensus 283 ~vaLv~k~ 290 (539)
T PF08337_consen 283 TVALVPKQ 290 (539)
T ss_dssp EEEEEES-
T ss_pred eEEEeecc
Confidence 99999986
No 182
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=76.88 E-value=14 Score=24.60 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|+. ++++...||.+|.+. .++++....+..+|+.+..+. ..++ -+++|+.|.+..
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~~-~~~~-~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEP--REVEEGATLAELLEE----LGLDPRGVAVALNGEIVPRSE-WAST-PLQDGDRIEIVT 60 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHHH-cCce-ecCCCCEEEEEE
Confidence 4554 455678899988877 467777778889998775432 3344 588999988764
No 183
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=76.85 E-value=0.79 Score=40.56 Aligned_cols=40 Identities=25% Similarity=0.513 Sum_probs=0.0
Q ss_pred cccHHHHHHHhhc----------ccCCCCCCeE-----EEEcCeecCCCCCcccc
Q psy1973 122 EMSILELKNKINE----------ALKIPVSDQK-----LLATGRPLLDTKQILDY 161 (252)
Q Consensus 122 ~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~G~~L~d~~tL~~y 161 (252)
+.+|.++|..+++ ..++|.+..+ |+|+.+.+.|+++|.+.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp -------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 6899999999999 8899999888 99999999999999988
No 184
>PRK07440 hypothetical protein; Provisional
Probab=76.65 E-value=17 Score=24.73 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|+. +++....||.+|-+. .++++..-.+-++|..+..+ ...++ -+++|+.|.++-
T Consensus 10 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~-~w~~~-~L~~gD~IEIv~ 65 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQ-FWEQT-QVQPGDRLEIVT 65 (70)
T ss_pred CCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCce-ecCCCCEEEEEE
Confidence 5664 556678899887754 67888777888999877533 24455 578899988764
No 185
>KOG4250|consensus
Probab=76.13 E-value=7.2 Score=38.43 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=38.2
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeec
Q psy1973 7 VLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPL 50 (252)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L 50 (252)
+.++..+.+-++++.|+..++..|+..+|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 33556688889999999999999999999999999999987643
No 186
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=74.66 E-value=24 Score=24.05 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=43.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|.+++.. +|+ .++++...|+.+|-.. .|+++..--+.++|..+..+. -.+. -+++|+.|.++-
T Consensus 1 ~~m~i~~-ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~-~~~~-~l~~gD~ievv~ 63 (68)
T COG2104 1 MPMTIQL-NGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQ-WADT-ILKEGDRIEVVR 63 (68)
T ss_pred CcEEEEE-CCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchh-hhhc-cccCCCEEEEEE
Confidence 3444444 455 4566666899988766 789988888899998886543 3344 478888887653
No 187
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=74.51 E-value=14 Score=26.02 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCeEEEE--cCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 21 MSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 21 ~TV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.++.+|+.+..++++++...-+|+. +|..++|+.-+..+ +..|+.|.+.+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL----p~nT~lm~L~~ 72 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL----PDNTVLMLLEK 72 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS----SSSEEEEEEES
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC----CCCCEEEEECC
Confidence 5899999999999999976666655 78889888777766 45566666653
No 188
>smart00455 RBD Raf-like Ras-binding domain.
Probab=73.97 E-value=10 Score=25.93 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=34.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATG 149 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 149 (252)
.|+. ..+.+.|+.|+.++-+.+.++.|+.++.-.+.+.|
T Consensus 8 ~~~~--~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 8 DNQR--TVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCE--EEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4555 48999999999999999999999999988888855
No 189
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=73.53 E-value=8.1 Score=28.32 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=24.4
Q ss_pred EEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 42 KLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 42 ~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.|.|.|+.|..+.+|++|-|-.+-+.|.+-+.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~ 35 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQK 35 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEecc
Confidence 478999999999999999444445555555553
No 190
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=73.06 E-value=21 Score=25.45 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|+. .+++.+.||.+|-+. .++++..-.+-++|..+.. .....+ -+++|+.|.++-
T Consensus 24 NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t-~L~egD~IEIv~ 79 (84)
T PRK06083 24 NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQST-VLSSGDAISLFQ 79 (84)
T ss_pred CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcc-cCCCCCEEEEEE
Confidence 5564 345667888877765 5788877777899988843 345566 689999998764
No 191
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=72.71 E-value=7 Score=29.92 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccC--CCCCCCEEEEEEe
Q psy1973 15 LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
+-|+.+.||++|...|..+.++++++.-|+.++..+..+.++++.= .-.++..|++...
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 4699999999999999999999998854455665556666664320 1234667777765
No 192
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=72.55 E-value=9.7 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=32.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG 47 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G 47 (252)
.++.+.+.++.+..+|..+|.++...+++.-+|.|.-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4566788999999999999999999999998998863
No 193
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=72.51 E-value=8.8 Score=26.53 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.9
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGR 150 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~ 150 (252)
.|+. ..+.+.+++||.++-.++.++.|+.++...+.+.|.
T Consensus 8 ng~~--t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 8 NGQR--TVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred CCCe--EEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 3454 389999999999999999999999998888877653
No 194
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=72.35 E-value=16 Score=24.23 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=39.4
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....||.+|.+.+ +++.....+..+|+.+..+. -.++ -+++|+.|.++-
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~-~~~~-~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSE-WAST-PLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHH-cCce-ecCCCCEEEEEE
Confidence 56667788999998776 46677778889998776543 2335 589999998874
No 195
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=71.82 E-value=5.3 Score=26.45 Aligned_cols=27 Identities=41% Similarity=0.447 Sum_probs=22.8
Q ss_pred HHHHHHhcccCChHHHHHHHHhhhccc
Q psy1973 219 IKEFNKSISTLSLDDLEALASSYLMEE 245 (252)
Q Consensus 219 ~k~~~~~~~~lsldd~er~a~~~~~~~ 245 (252)
-.++..++..+|++.+|++|.+++.=+
T Consensus 24 p~~~~~~I~~l~~eqLE~l~e~ildf~ 50 (59)
T PF14261_consen 24 PPEIQERIQQLSLEQLEALAEAILDFN 50 (59)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHhCCC
Confidence 356788999999999999999988644
No 196
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=70.95 E-value=23 Score=23.46 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|+.+ ++..+.||.+|.+. .++++....+..+|..+..+. ..++ -+++|+.|.+..
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~~-~~~~-~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRSE-WDDT-ILKEGDRIEIVT 59 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHHH-cCce-ecCCCCEEEEEE
Confidence 56644 45677899988876 567777777788998774332 3445 588999988764
No 197
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=70.28 E-value=29 Score=24.59 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=29.7
Q ss_pred EEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q psy1973 2 KISVKVLQGQEIFLDVNS--EMSILELKNKINEALKIP 37 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~--~~TV~~lK~~I~~~~gi~ 37 (252)
+|.+.. +|.+..|.+++ +.+..+|++.|..+++++
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 455544 78888999988 679999999999999999
No 198
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=69.96 E-value=25 Score=33.18 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=54.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC------CCCeEE-EEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIP------VSDQKL-LATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~------~~~q~L-~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+|+|... .+...+-++.+..|.++--.|-+..+-. +....| ..+|.+|+.+.+|.+. +|.||+.++|...
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~-gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEA-GVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHc-CCCCCCeEEEeeC
Confidence 4666653 3447788899999999999998887531 223344 3578899999999999 9999999999875
No 199
>KOG2086|consensus
Probab=69.74 E-value=12 Score=34.21 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=49.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEE--EcCeecC-CCccccccCCCCCC
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALK-IPVSDQKLL--ATGRPLL-DTKQILDYPQIKEG 65 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~g-i~~~~q~L~--~~G~~L~-d~~tL~~~~~i~~~ 65 (252)
.|.||.-+|......++..-||.+|+..|..... -+...+.|+ |--++|. ++.||++- |+.+-
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~A-gL~Ns 373 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEA-GLLNS 373 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhc-cchhh
Confidence 4788999999988899999999999999998764 444456664 5577884 57899999 88754
No 200
>KOG2689|consensus
Probab=68.50 E-value=15 Score=32.03 Aligned_cols=69 Identities=9% Similarity=0.121 Sum_probs=53.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeec-C--CCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPL-L--DTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L-~--d~~tL~~~~~i~~~s~i~l~ 71 (252)
.|.||..+|+++...+++..|+..++..|.-..|...+-..|. |-...+ + -.++|..+ ++.+.+++.+.
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L-~L~Psa~lil~ 285 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQEL-DLVPSAVLILE 285 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHh-ccccchheecc
Confidence 5789999999999999999999999999999988765433332 223334 2 25889999 99888887653
No 201
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=68.41 E-value=37 Score=23.78 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=39.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC-----C------CCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKI-----P------VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi-----~------~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...++++ ..||.+|.+.+.+++.- - .....+..+|+....+.. . -+++|+.|.+..
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~-~l~dgdev~i~P 83 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---T-ELKDGDVVAIFP 83 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---C-CCCCCCEEEEeC
Confidence 4667776 89999999999888631 0 122456778887654432 5 688999988764
No 202
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=68.40 E-value=23 Score=24.90 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=48.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecC--C-CCCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL--D-TKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~--d-~~tL~~y~~i~~gs~l~l~ 173 (252)
.|.. +.-....++++.+|-.-|... |.+....+|+ |--+.+. | +.||.+. |+.+.++|.+-
T Consensus 13 ~G~r--~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~-gL~p~~~L~Ve 78 (80)
T cd01771 13 SGDF--LERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLEL-KLYPQETLILE 78 (80)
T ss_pred CCCE--EEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHc-CCCCCcEEEEE
Confidence 4554 366788899999999999875 7777888887 6677774 2 4599999 99999998874
No 203
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=67.63 E-value=36 Score=24.59 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=33.2
Q ss_pred EEEEEeCCCcEEEEEecC-----CCCHHHHHHHHHHHhCCCC-CCeEEEEc
Q psy1973 2 KISVKVLQGQEIFLDVNS-----EMSILELKNKINEALKIPV-SDQKLLAT 46 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~-----~~TV~~lK~~I~~~~gi~~-~~q~L~~~ 46 (252)
.|.|+. +|....|.++. +.+..+|+++|.+.+++++ ....|.|.
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 355544 66777777764 6899999999999999987 44566664
No 204
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=67.00 E-value=20 Score=24.24 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=43.0
Q ss_pred eeecCCcccHHHHHHHhhccc---CCCCCCeEEE-EcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEAL---KIPVSDQKLL-ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~---gip~~~q~L~-~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.++.+.....--+.++.-+.. |-|++.-.|- -+|..|.-++.+.|| |+.+|-++.|.++-
T Consensus 9 ~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~-GftngvkLFLsLKA 72 (76)
T PF10790_consen 9 QVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDF-GFTNGVKLFLSLKA 72 (76)
T ss_pred eeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhc-cccccceEEEEeec
Confidence 566666655555555544443 3466655554 478889999999999 99999999998874
No 205
>KOG0012|consensus
Probab=66.84 E-value=4.8 Score=36.42 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=54.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCC--CCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT--KQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~--~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+++++..+....+++..++...|++.+..-|+|+++++... .++..| |++.|.++.+.-+-
T Consensus 15 ~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~-g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 15 FPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQI-GLKDGDSLALRCKS 77 (380)
T ss_pred eccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhc-ccccceeEeccCCC
Confidence 68888899999999999999999999999999999999876 489999 99999999876553
No 206
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=66.62 E-value=27 Score=21.67 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHhhh
Q psy1973 194 LRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDLEALASSYL 242 (252)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~~~ 242 (252)
..+.+.....-+|+..++.++++++.. -..++.+++=|.|-..|
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~-----~~~~~~e~~ik~aLk~L 46 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLE-----KPGMDVEELIKQALKLL 46 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHH-----STTS-HHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhc
Confidence 456777788899999999999999776 56677888777665443
No 207
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=66.28 E-value=40 Score=23.22 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred EEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 13 IFLDVNSE-MSILELKNKINEALK-IP--VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 13 ~~~~v~~~-~TV~~lK~~I~~~~g-i~--~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
..++++.+ .||.+|...+.++++ +- .....+..+|+...+ +. -+++|+.|.+..
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~-~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DA-LLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----Cc-CcCCCCEEEEeC
Confidence 56788766 899999999998874 11 123356678877664 45 688999988764
No 208
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=66.20 E-value=14 Score=25.34 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=44.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCC-CCCeEEEE----cC--eecCCCCCcccccCCC--CCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIP-VSDQKLLA----TG--RPLLDTKQILDYPQIK--EGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~----~G--~~L~d~~tL~~y~~i~--~gs~l~l~~ 174 (252)
+|.. ..+.++++.|+.++=+.|+...|+. .+-.-|.| +| .-|..+++|.++ ... ...++++.+
T Consensus 5 D~~~--~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q-~~~~~~~~~l~frv 76 (80)
T PF09379_consen 5 DGTT--KTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQ-LKKNNPPFTLYFRV 76 (80)
T ss_dssp SEEE--EEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGS-TBTSSSSEEEEEEE
T ss_pred CCCc--EEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHH-cCCCCCCEEEEEEE
Confidence 4454 4888999999999999999999996 44556777 22 347788889988 666 334444444
No 209
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=65.87 E-value=30 Score=25.36 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=33.7
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q psy1973 5 VKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA 45 (252)
Q Consensus 5 Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~ 45 (252)
++-.+|.+..+.|+.+.|..+|+.++.+..++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678888899999999999999999999998876 55544
No 210
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=65.69 E-value=9.7 Score=27.33 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=30.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCC---CeEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVS---DQKLLA 147 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~---~q~L~~ 147 (252)
.|+++ .+.+.++..+.+|++.|.++.|+... ...|.|
T Consensus 9 ~Grvh--Rf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 9 KGRVH--RFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCEE--EEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 68885 88888999999999999999999864 444444
No 211
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=64.77 E-value=18 Score=25.13 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=39.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L--~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
....|- -.|..+|+.+..++++++...-+| .-+|..++|+.-+..+ +..++.|++.
T Consensus 12 ~k~GV~-A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL----p~nt~l~~L~ 69 (74)
T smart00266 12 VRKGVA-ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL----PDNTELMALE 69 (74)
T ss_pred eeEEEE-cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC----CCCcEEEEEc
Confidence 344443 347999999999999998655555 4479999988877766 3445555554
No 212
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=64.56 E-value=28 Score=24.16 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=43.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEE---E---cCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALK-IPVSDQKLL---A---TGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~g-i~~~~q~L~---~---~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+.|-.-..++.|+.+|+..|.+++. +-|....+. . .|--|+.+-.+.+. +..+++|.+.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV--f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV--FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee--eccCCEEEEEec
Confidence 3455567899999999999999974 444443332 1 24456677777777 678888888876
No 213
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=63.32 E-value=44 Score=22.60 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=38.2
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..+++....||.+|-+.+ +++.....+..+|.... .++ -+++|+.|.++-
T Consensus 16 ~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~-~l~~gD~Veii~ 65 (70)
T PRK08364 16 KEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDD-PVKDGDYVEVIP 65 (70)
T ss_pred eEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCc-CcCCCCEEEEEc
Confidence 367778888999998776 66666667778998874 366 689999998763
No 214
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=63.13 E-value=33 Score=22.67 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=38.2
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++..+.||.+|.+.+ ++++....+..+|+.+..+. -.++ -+++|+.|.++-
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~-~~~~-~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSE-WDDT-ILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHH-cCce-ecCCCCEEEEEE
Confidence 56666788999998865 46666677778998775433 3345 599999998874
No 215
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=62.93 E-value=15 Score=28.18 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=40.7
Q ss_pred EecC-CCCHHHHHHHHHHH----hCCCCCC------eEEEEc-----------------Ceec---CCCccccccCCCCC
Q psy1973 16 DVNS-EMSILELKNKINEA----LKIPVSD------QKLLAT-----------------GRPL---LDTKQILDYPQIKE 64 (252)
Q Consensus 16 ~v~~-~~TV~~lK~~I~~~----~gi~~~~------q~L~~~-----------------G~~L---~d~~tL~~~~~i~~ 64 (252)
.|+. +.||.+|++.+.+. .|++|-+ .++++. .+.| +++.+|.++ ||.+
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~-gv~n 99 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL-GVEN 99 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc-CCCc
Confidence 4787 89999999988776 4566543 334321 2456 678899999 9999
Q ss_pred CCEEEEEEe
Q psy1973 65 GTKLNLVVK 73 (252)
Q Consensus 65 ~s~i~l~~~ 73 (252)
+..|-+...
T Consensus 100 ETEiSfF~~ 108 (122)
T PF10209_consen 100 ETEISFFNM 108 (122)
T ss_pred cceeeeeCH
Confidence 988877544
No 216
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.87 E-value=35 Score=30.70 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=45.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+| +|+. +++..+.||.+|-+. .++++....+.+||..+..+. ..++ -+++|+.|.+.--
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~-w~~t-~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRSE-YGQV-ALEEGDELEIVHF 62 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHHH-cCcc-ccCCCCEEEEEEE
Confidence 66666 5564 556677888877765 688988888899998885333 4555 5889999988754
No 217
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=61.85 E-value=32 Score=22.71 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=39.9
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....||.++-.. .+++.....+..+|..+....-.... +++|+.|.++-
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~~--l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHASTA--LREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCccc--CCCCCEEEEEE
Confidence 5566678888887754 57888877888999887766544444 99999998874
No 218
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=61.78 E-value=24 Score=33.98 Aligned_cols=63 Identities=32% Similarity=0.473 Sum_probs=41.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEE-EcC---e-ecCCC-------------ccccccCCCCC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEAL--KIPV------SDQKLL-ATG---R-PLLDT-------------KQILDYPQIKE 64 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~--gi~~------~~q~L~-~~G---~-~L~d~-------------~tL~~~~~i~~ 64 (252)
..+.+.|-.-|||.++|++|-... +.|. ++.-|- ..| + .|.|. .||..| +|.+
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~d 280 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHY-KVPD 280 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHH-T--T
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhc-CCCC
Confidence 347889999999999999997762 4433 333342 222 2 45442 489999 9999
Q ss_pred CCEEEEEEec
Q psy1973 65 GTKLNLVVKR 74 (252)
Q Consensus 65 ~s~i~l~~~~ 74 (252)
|+++-|+.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999998874
No 219
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=61.65 E-value=31 Score=23.26 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKI--PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi--~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...+.+....||.+|.+.+..++.- ....-.+..+|+...+ . -.+. -+++|+.|.+..
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~~~~-~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-GLDT-PLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-TTTS-BEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-cCCc-CcCCCCEEEEEC
Confidence 5677889999999999999887631 2255678899998877 3 5555 588999998864
No 220
>KOG3439|consensus
Probab=61.64 E-value=29 Score=26.06 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeec
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPL 50 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L 50 (252)
-.+.|++++|++.+-..|....++++.++-++|=..-.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 45789999999999999999999999999887755433
No 221
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=60.99 E-value=8.5 Score=32.36 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPV 38 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~ 38 (252)
|-.|.|.|.++.|..++|++|++++|++.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 55588899999999999999999999985
No 222
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=60.47 E-value=58 Score=24.16 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=42.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHH----hC--CCCC-CeEEEEcCee--cCCCccccccC----CCCCCCEEEEEEe
Q psy1973 11 QEIFLDVNSEMSILELKNKINEA----LK--IPVS-DQKLLATGRP--LLDTKQILDYP----QIKEGTKLNLVVK 73 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~----~g--i~~~-~q~L~~~G~~--L~d~~tL~~~~----~i~~~s~i~l~~~ 73 (252)
..+++.+++++|+.++.+.+-.+ .+ -+++ +..|--.|+. |..+..|.+|. .++.|..++|++.
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 44889999999999999988776 11 2233 4566566662 55566666552 2566778888765
No 223
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=60.02 E-value=51 Score=23.26 Aligned_cols=54 Identities=22% Similarity=0.452 Sum_probs=40.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQKL-LATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L-~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+..+.+.+....||.++-+. .|+|...-.+ +.||+...- +| -+++|+.|.+...
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~-~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DY-RLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cc-cCCCCCEEEEEec
Confidence 44577888999999987765 8999988855 568886542 36 6888999887643
No 224
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=59.82 E-value=23 Score=24.95 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=38.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L--~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
...|- -.|..+|+.+..++++++...-+| .-+|..++|+.-+..+ +..++.|++.
T Consensus 15 k~GV~-A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL----p~nT~l~~l~ 71 (78)
T cd01615 15 KKGVA-ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL----PDNTVLMLLE 71 (78)
T ss_pred eEEEE-cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC----CCCcEEEEEC
Confidence 34443 347999999999999996544444 4579999888877766 3445555554
No 225
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=59.38 E-value=40 Score=23.39 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=41.9
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCe--ecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGR--PLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~--~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.|+. ..+.+.++.||.++-.++.++-|+.++..-++..|. .+.-+...+.. .|..|.+..|
T Consensus 8 dg~~--T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~~~L----~~~El~vE~r 70 (73)
T cd01817 8 DGST--TVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDSSVL----AGQEVRLEKR 70 (73)
T ss_pred CCCe--EEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCcccee----eccEEEEEEe
Confidence 3444 389999999999999999999999988877776664 34433333222 4444544433
No 226
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=59.05 E-value=43 Score=23.43 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=35.2
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE
Q psy1973 4 SVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKL 43 (252)
Q Consensus 4 ~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L 43 (252)
.|-..+|+...+.|.++.|+.++-+...++.++.|...-|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 3556788989999999999999999999999999987655
No 227
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=56.71 E-value=44 Score=23.90 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=32.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD 40 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~ 40 (252)
|.|-..+|....+.|+...|+.++-+.+..+.++..+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 55666789999999999999999999999999876543
No 228
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=56.51 E-value=29 Score=25.79 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=38.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEcCeecCCCccccccC--CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSD-QKLLATGRPLLDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~~G~~L~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+..+++++ .-|+.++.....+.++++.= .-.++..+++...
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEec
Confidence 345889999999999999999998865 34456675556677775430 0134556666554
No 229
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=55.72 E-value=61 Score=22.93 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=35.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA 45 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~ 45 (252)
+..|+. +|.+..|.++..-|-..|+++|...+.+|+...-+.|
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 456644 7777778888888999999999999999987766655
No 230
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=55.61 E-value=32 Score=24.22 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCe--EEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 21 MSILELKNKINEALKIPVSDQ--KLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 21 ~TV~~lK~~I~~~~gi~~~~q--~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.+..+|+.+..+.++++...- .|.-+|..++++.-+..+ .++ +..|++.
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L---pdn-T~lm~L~ 71 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL---GDN-THFMVLE 71 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC---CCC-CEEEEEC
Confidence 479999999999999975444 445679999888877766 344 4444454
No 231
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=55.52 E-value=58 Score=22.65 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIP--VSDQKLL 44 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~--~~~q~L~ 44 (252)
+...++.|+.++|..++-..+.+++++. +....|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5557899999999999999999999987 4444453
No 232
>KOG0007|consensus
Probab=54.12 E-value=6 Score=35.81 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=41.2
Q ss_pred cccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCc
Q psy1973 108 QSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQI 158 (252)
Q Consensus 108 ~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL 158 (252)
..|.++++++.- .+..|..+|.++....+|++..|.+.+.|..|.|+.++
T Consensus 290 ~dg~~~~~~~~~-~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQS-LSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeecccc-ccccccccccccccccccchhheeeccCCcccCccccc
Confidence 366765334433 78899999999999999999999999999999998554
No 233
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=53.94 E-value=31 Score=24.40 Aligned_cols=55 Identities=22% Similarity=0.138 Sum_probs=38.2
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCC----CeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVS----DQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~----~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
...|- -.|..+|+.+..+++.++.. ...|.-+|..++|+.-+..+ +..+..|++.
T Consensus 15 k~GV~-A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL----p~nT~l~~L~ 73 (80)
T cd06536 15 QHGVA-ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL----PPNTKFVLLA 73 (80)
T ss_pred eEeEE-cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC----CCCcEEEEEC
Confidence 33443 24799999999999999832 33445679999988878776 3445555554
No 234
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=53.71 E-value=26 Score=26.36 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=40.1
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EEcCeecCCCccccc----cCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKL-LATGRPLLDTKQILD----YPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L-~~~G~~L~d~~tL~~----~~~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+.++.+++--+ +.++.....+.++.+ | +- ++..|++...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~-kd-~DGfLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEH-KD-EDGFLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHh-CC-CCCEEEEEEe
Confidence 456999999999999999999998876444 445543455555543 3 32 3567777765
No 235
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=52.02 E-value=75 Score=21.80 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=38.3
Q ss_pred eeeecCCc-ccHHHHHHHhhcccC-C-C-CCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSE-MSILELKNKINEALK-I-P-VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~-~tV~~lK~~i~~~~g-i-p-~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..+++..+ .||.+|.+.+..+.+ + . .....+..+|+...+ +. -+++|+.|.++-
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~-~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DA-LLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----Cc-CcCCCCEEEEeC
Confidence 36777766 899999999988864 1 1 133456677777663 56 699999998863
No 236
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=51.97 E-value=70 Score=22.18 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=31.8
Q ss_pred EEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE
Q psy1973 3 ISVKVLQGQ----EIFLDVNSEMSILELKNKINEALKI--PVSDQKLL 44 (252)
Q Consensus 3 i~Vk~~~g~----~~~~~v~~~~TV~~lK~~I~~~~gi--~~~~q~L~ 44 (252)
|.|-..++. ..++.|++++|+.++-..+.+++++ .+....|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 344444555 7789999999999999999999999 33445563
No 237
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=51.68 E-value=34 Score=24.62 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=34.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcCeecC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALKIPVSDQK-LLATGRPLL 51 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G~~L~ 51 (252)
..++|.|+++.|=.++|+.|+..+|+.+..-+ +.+.|+.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 56899999999999999999999999987654 567777443
No 238
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=51.32 E-value=32 Score=24.18 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=37.8
Q ss_pred cccHHHHHHHhhcccCCCCCCeEEEE--cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 122 EMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+..+|+.+..+.++++....+|+. .|.++.|+.-+... +..+..+++.+
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL----p~nT~lm~L~~ 72 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL----PDNTVLMLLEK 72 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS----SSSEEEEEEES
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC----CCCCEEEEECC
Confidence 46899999999999999988888876 78888877655555 45555555554
No 239
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=50.84 E-value=23 Score=24.87 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=32.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATG 149 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 149 (252)
+.+.+.+..+..+|..+|++++..+++.-+|-|.-
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 57899999999999999999999999999999865
No 240
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=50.35 E-value=63 Score=22.00 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=34.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEE--cCeecCCCCCcccc
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDY 161 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~y 161 (252)
.|+. ..+.+.++.||.+.-.++.++.|+.++.-.+.. ..+.|..+...+..
T Consensus 9 ~~q~--t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 9 NGQR--TVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp TTEE--EEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred CCCE--EEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeee
Confidence 3454 389999999999999999999999888655543 44556665555555
No 241
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=50.22 E-value=37 Score=26.97 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=32.7
Q ss_pred EEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCC
Q psy1973 13 IFLDVNS-EMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEG 65 (252)
Q Consensus 13 ~~~~v~~-~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~ 65 (252)
+.+++.. .+.+..+++...+.+.++.+ +.-|+-+....|++|| ++.|
T Consensus 77 i~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY--~KyG 124 (153)
T PF02505_consen 77 IILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY--AKYG 124 (153)
T ss_pred EEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh--hhcC
Confidence 4567777 66777777666655533322 3469999999999999 6666
No 242
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=49.11 E-value=88 Score=21.71 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=37.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCe
Q psy1973 5 VKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR 48 (252)
Q Consensus 5 Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~ 48 (252)
|-..+|..-.+.+.++.||.+.-.++.++.|+.+..-.++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44568888889999999999999999999999988777765553
No 243
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=49.03 E-value=43 Score=23.59 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=39.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPV-SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~-~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
....|- -.+..+|+.+..+.++++. ....|.-+|..++|+.-+..+ +..++.|++.+
T Consensus 14 ~k~GV~-A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL----p~nt~l~vL~~ 71 (79)
T cd06538 14 LRKGIM-ADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL----ADNTVFMVLGK 71 (79)
T ss_pred eeEeEE-cCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC----CCCcEEEEECC
Confidence 334443 3479999999999999953 224455679999888877766 34555555553
No 244
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=48.56 E-value=56 Score=23.60 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=33.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcCee
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQK-LLATGRP 49 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G~~ 49 (252)
...+.|.|++..|=.++|+.|+..+|+++..-+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 467999999999999999999999999997764 4566654
No 245
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=48.04 E-value=60 Score=23.32 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=36.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQK 42 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~ 42 (252)
++.|-..+|....+.+.-+++..++-+.+..+.|+|.+-..
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 46677788999999999999999999999999999987654
No 246
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=47.66 E-value=73 Score=22.25 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=38.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCC------C-----CCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKI------P-----VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gi------p-----~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..+++. ..||.+|.+.+..+..- . -....+..+|+...++.. . -+++|+.|.++-
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~-~l~dgdev~i~P 83 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---T-ELKDGDVVAIFP 83 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---C-CCCCCCEEEEeC
Confidence 467776 89999999999877531 0 123556678877655432 6 699999998874
No 247
>KOG4572|consensus
Probab=47.27 E-value=30 Score=34.89 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=48.4
Q ss_pred CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEEc-CeecCCCccccccCC--CCCCCEEEEE
Q psy1973 9 QGQEIFLDVNS-EMSILELKNKINEALKIPVSDQKLLAT-GRPLLDTKQILDYPQ--IKEGTKLNLV 71 (252)
Q Consensus 9 ~g~~~~~~v~~-~~TV~~lK~~I~~~~gi~~~~q~L~~~-G~~L~d~~tL~~~~~--i~~~s~i~l~ 71 (252)
.|...+|+.+. ..|+.+||..|+.+.|+....|.|+-+ |..+..++.|..| . -.+-+.|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~-StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEI-STAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhh-ccccCCCCceEEe
Confidence 57888888875 689999999999999999999988654 5678888888888 4 2334455554
No 248
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=46.41 E-value=61 Score=23.09 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=29.8
Q ss_pred cccHHHHHHHhhc-ccCCCC----CCeEEEEcCee----cCCCCCcccccCCCCCCEEEEE
Q psy1973 122 EMSILELKNKINE-ALKIPV----SDQKLLATGRP----LLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 122 ~~tV~~lK~~i~~-~~gip~----~~q~L~~~G~~----L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|+.+|-.+|-. +.|... -..+++|..-. -...++|+++ ||++|+.|.+.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~el-gi~~gs~L~v~ 67 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSEL-GIVNGSILTVD 67 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGG-T--TT-EEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHc-CCCCCCEEEEE
Confidence 6789999988754 556532 14566665443 2345699999 99999998765
No 249
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.75 E-value=50 Score=23.39 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhCCCC-CCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 21 MSILELKNKINEALKIPV-SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 21 ~TV~~lK~~I~~~~gi~~-~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.+..+|+.+..+..+++. ....|.-+|..++++.-+..+ .++ +..|++.
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tL---pdn-T~lm~L~ 70 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELL---EDD-TCLMVLE 70 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhC---CCC-CEEEEEC
Confidence 479999999999999873 334455679999888877766 344 4445554
No 250
>KOG2982|consensus
Probab=45.61 E-value=35 Score=30.73 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=42.6
Q ss_pred eecCCcccHHHHHHHhhcccCCCCCCeEEEE---cCee-----cCCCCCcccccCCCCCCEEEE
Q psy1973 117 IKVNSEMSILELKNKINEALKIPVSDQKLLA---TGRP-----LLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 117 i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~-----L~d~~tL~~y~~i~~gs~l~l 172 (252)
.-+.-.-||.+++.++..+-|+.+..++|+| .|+. +.-+..|..| +|++|+.+-+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~f-kIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYF-KIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEE-eccCCCEeee
Confidence 3344567999999999999999999999997 3443 2223478888 9999998755
No 251
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=44.32 E-value=1e+02 Score=20.99 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=40.7
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....|+.+|-.. .|++....-..++|..+..+.-. +. -+++|+.|.++-
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~~-~~-~l~~gD~ievv~ 63 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQWA-DT-ILKEGDRIEVVR 63 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchhhh-hc-cccCCCEEEEEE
Confidence 6777777899988765 57888888888999988765543 44 488999988764
No 252
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=43.23 E-value=92 Score=20.29 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=35.5
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++.+..||.++-+.+.. + ....+..+|.....+.-. +. -+++|+.|.++-
T Consensus 9 ~~~~~~~~tl~~ll~~l~~----~-~~~~v~vN~~~v~~~~~~-~~-~L~~gD~vei~~ 60 (65)
T PRK06944 9 TLSLPDGATVADALAAYGA----R-PPFAVAVNGDFVARTQHA-AR-ALAAGDRLDLVQ 60 (65)
T ss_pred EEECCCCCcHHHHHHhhCC----C-CCeEEEECCEEcCchhcc-cc-cCCCCCEEEEEe
Confidence 5666778899998876633 3 235667888876544333 34 489999998874
No 253
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=43.21 E-value=53 Score=26.02 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=32.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCC
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEG 65 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~ 65 (252)
+.+++...+.+.++++...+.+-++.+ +.-|+-+....|++|| ++.|
T Consensus 76 I~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY--~KyG 122 (150)
T TIGR03260 76 IILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY--IKYG 122 (150)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh--hhhC
Confidence 455666777777777766666544433 4568888999999999 6664
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.73 E-value=55 Score=22.88 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=29.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALKIPVSDQKL 43 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L 43 (252)
+.+.|.|+++.|=.++|+.|+..+|+.+..-+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999998876543
No 255
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=42.53 E-value=1.5e+02 Score=27.96 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=43.1
Q ss_pred eeecCCcccHHHHHHHhhcccCC----C--CCCeEEE-EcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEALKI----P--VSDQKLL-ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gi----p--~~~q~L~-~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.+-+..+..|.++--.|.+..+- + ...-.|. -+|.+|+.++||.+. +|.||+.++|.-+.
T Consensus 15 DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~-gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 15 DVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEA-GVRDGELLVLVPAS 81 (452)
T ss_pred eeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHc-CCCCCCeEEEeeCC
Confidence 56666667777777666555432 2 2333444 478899999999999 99999999998754
No 256
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=41.88 E-value=1.3e+02 Score=21.95 Aligned_cols=72 Identities=25% Similarity=0.293 Sum_probs=42.6
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEEcCe--ecCCCccccccC----CCCCCCEE
Q psy1973 2 KISVKVLQ-GQEIFLDVNSEMSILELKNKINEA--LKIPVS----DQKLLATGR--PLLDTKQILDYP----QIKEGTKL 68 (252)
Q Consensus 2 ~i~Vk~~~-g~~~~~~v~~~~TV~~lK~~I~~~--~gi~~~----~q~L~~~G~--~L~d~~tL~~~~----~i~~~s~i 68 (252)
.|.|...+ +..++|.++.+.|+.+|-..+-.+ .+..+. +..|--.|+ -|..+..|.+|. .+..+-.+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 45666653 445899999999999999988776 222221 456656666 255677777772 13455566
Q ss_pred EEEEe
Q psy1973 69 NLVVK 73 (252)
Q Consensus 69 ~l~~~ 73 (252)
+|++.
T Consensus 98 ~L~Lv 102 (106)
T PF00794_consen 98 HLVLV 102 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 257
>KOG4572|consensus
Probab=40.77 E-value=28 Score=35.17 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=48.2
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEE-cCeecCCCCCcccccCC--CCCCEEEEEEe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDYPQI--KEGTKLNLVVK 175 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~~L~d~~tL~~y~~i--~~gs~l~l~~~ 175 (252)
.|+.+.|.++.. ..|+.+||..|+.+.|+.+..|.++- +|..+.-++.|..| +- .+-+-|++.-+
T Consensus 3 rGqaltFDleae-tqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~-StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 3 RGQALTFDLEAE-TQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEI-STAGTDTNPIFFFNK 70 (1424)
T ss_pred CCceeEEeecce-eehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhh-ccccCCCCceEEeeh
Confidence 566642333333 77999999999999999999998774 67788888899999 52 44556666644
No 258
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=40.40 E-value=1.2e+02 Score=28.24 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=55.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEEc----Cee--cCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEAL--KIPVSDQKLLAT----GRP--LLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~--gi~~~~q~L~~~----G~~--L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|.+.+|+..|. ..+++.++++.+-|-.+|-.-. +..|++..+.-+ |.. +..++|+.+. |++.|..+.|..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dl-GL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDL-GLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhh-ccccCcEEEEEe
Confidence 77889998777 5789999999999888887765 455666555432 332 4568999999 999999999988
Q ss_pred ec
Q psy1973 73 KR 74 (252)
Q Consensus 73 ~~ 74 (252)
+.
T Consensus 79 sd 80 (571)
T COG5100 79 SD 80 (571)
T ss_pred cc
Confidence 63
No 259
>KOG4598|consensus
Probab=40.34 E-value=67 Score=32.09 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=46.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--E--cCeec--CCCccccccCCCCCCCEEEEEEec
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVSDQKLL--A--TGRPL--LDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~--~G~~L--~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.+.+.|+...+++.||+.|+...+++.+..+++ | +|..+ .++.+|+.+ -++.+|.+.+-+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~---~~~~~iTI~LG~ 943 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA---FQSCFITIKLGA 943 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh---cccceEEEEecC
Confidence 467889999999999999999999999999885 2 23333 567788865 467787776653
No 260
>KOG2561|consensus
Probab=39.91 E-value=25 Score=33.00 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=49.1
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 15 LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++-+...|-.++...|.+++||+....+.+.+||.|.-.+||.+. |++.+..+.+.+.
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQ-glk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQ-GLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhh-hhhhhhHHHHHhc
Confidence 345567788899999999999999988899999999999999999 9988766655443
No 261
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=39.36 E-value=62 Score=22.52 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=37.3
Q ss_pred cccHHHHHHHhhcccCCCCCCeEEEE--cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 122 EMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
-.+..+|+.+..++++++...-+|+. .|..++|+.-+... +..+..+++.+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL----p~nt~l~~L~~ 70 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL----PDNTELMALEK 70 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC----CCCcEEEEEcC
Confidence 56899999999999999976667654 79999888766665 34444444443
No 262
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.71 E-value=71 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQKL 43 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L 43 (252)
.+.+.|.|++..+=.++|+.|+..+|+.+..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3679999999999999999999999999876643
No 263
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=38.62 E-value=1.1e+02 Score=21.30 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=24.1
Q ss_pred EEEeCCCcE-EEEEec-CCCCHHHHHHHHHHHhCC-CCCCeEE
Q psy1973 4 SVKVLQGQE-IFLDVN-SEMSILELKNKINEALKI-PVSDQKL 43 (252)
Q Consensus 4 ~Vk~~~g~~-~~~~v~-~~~TV~~lK~~I~~~~gi-~~~~q~L 43 (252)
+-|..+.+. ..+.++ ...+|.+||..|..+.++ .....-|
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL 44 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDL 44 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEE
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCE
Confidence 344444443 456665 478999999999887766 3334333
No 264
>KOG2507|consensus
Probab=38.52 E-value=45 Score=31.08 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=60.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EEcCeecCC---CccccccCCCCCCCEEEEEEec
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLD---TKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L--~~~G~~L~d---~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
+|.||..+|..|+=.++.++-+..++..+...-++.....-| .|-.+...+ +++|.++ .+.+...|.|+-+.
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl-~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLEL-RLFPSAALVVLPKK 392 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHh-ccCCcceEEEEecC
Confidence 578999999999989999999999999999888887777766 477777633 5899999 99998888887764
No 265
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=38.51 E-value=27 Score=26.69 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=42.2
Q ss_pred ecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccC---CCCCCEEEEEEec
Q psy1973 118 KVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ---IKEGTKLNLVVKR 176 (252)
Q Consensus 118 ~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~---i~~gs~l~l~~~~ 176 (252)
-|..+.||+++...|..+.++++++.-|..++..+..+.++++. . =.++..|++...-
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l-Ye~~KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI-ADACKRDDGFLYVSVRT 106 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH-HHHhcCCCCeEEEEEcc
Confidence 57889999999999999999998884444455555555566543 2 2457788888764
No 266
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=38.18 E-value=50 Score=23.31 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=28.9
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCC-CCeEEEEcCe
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPV-SDQKLLATGR 150 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~G~ 150 (252)
+.+.+.++.+..+|++.|+.++++.. ....|-|..-
T Consensus 12 ~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 12 IRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 48888899999999999999999864 5566666543
No 267
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=38.16 E-value=30 Score=20.14 Aligned_cols=30 Identities=7% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q psy1973 196 DASYKFLRKYFTETQSNKIADEFIKEFNKS 225 (252)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~ 225 (252)
+.+..+..++|+..++.++++....+.++.
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL~~~~~nve~A 33 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREALRACNGNVERA 33 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 567888888999999999988765555544
No 268
>PRK05910 type III secretion system protein; Validated
Probab=37.95 E-value=2.5e+02 Score=27.55 Aligned_cols=103 Identities=11% Similarity=0.054 Sum_probs=72.2
Q ss_pred cccHHHHHHHhhcccCCCCCC-eEEEEcCeecCCCCCcccccCCCCCCEEEEEEecCccccccccCCCCCcchhHHHHHH
Q psy1973 122 EMSILELKNKINEALKIPVSD-QKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYK 200 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip~~~-q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (252)
.+-|..++++++...|++.-. .++-.+- |. | .|.-...-.-...- ...-+.+.+.+
T Consensus 334 ~~ri~~iR~~ia~elG~v~P~~irirdn~--L~-------Y-~i~i~g~~v~~~~V-------------~~tHl~evi~~ 390 (584)
T PRK05910 334 ANLYRAAREEIFQELGVVFPEEIVVRHVE--SS-------P-RLIFSGQEVYLREL-------------SCPAILPSLRN 390 (584)
T ss_pred HHHHHHHHHHHHHHcCCCCCCeeEEEEcC--CC-------c-eEEECcEEEeeeee-------------hHHHHHHHHHH
Confidence 567889999999999998777 5655443 33 6 55333222111000 01235666667
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHhc-----ccCChHHHHHHHHhhhccccC
Q psy1973 201 FLRKYFTETQSNKIADEFIKEFNKSI-----STLSLDDLEALASSYLMEEEC 247 (252)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~k~~~~~~-----~~lsldd~er~a~~~~~~~~~ 247 (252)
.....++.++.+..++.+.++|-+-+ ..+|+..+-+.-+.+|+|..+
T Consensus 391 ~a~ellgrqevq~Lld~l~~~~p~lVeelvp~~l~l~~i~~VLq~LL~E~Vs 442 (584)
T PRK05910 391 LAPEAISERFVKRLVEEFQEVAGISIEEIIPKKISENSLVFLLRALVRERVS 442 (584)
T ss_pred hHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHHHHHHHHHHHhcCCc
Confidence 77778999999999999999987644 557899999999999988754
No 269
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=37.85 E-value=1.4e+02 Score=20.81 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEE
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPV--SDQKL 43 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~--~~q~L 43 (252)
+...++.|++++|+.++-..+.+++++.. ....|
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L 50 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVL 50 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEE
Confidence 55688999999999999999999999975 34445
No 270
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=37.13 E-value=73 Score=21.58 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHhhhcccc
Q psy1973 194 LRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDLEALASSYLMEEE 246 (252)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~~~~~~~ 246 (252)
+.-++..+-..+|+...+..+++++-+-|...-.-+--|...-|+..++..++
T Consensus 11 ~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 11 IDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhh
Confidence 44466666677999999999999999999766444444555568888877654
No 271
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=36.89 E-value=1.7e+02 Score=21.92 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=30.2
Q ss_pred CEEEEEeCCCcE--EEEEecCCCCHHHHHHHHHHHhCCC
Q psy1973 1 MKISVKVLQGQE--IFLDVNSEMSILELKNKINEALKIP 37 (252)
Q Consensus 1 M~i~Vk~~~g~~--~~~~v~~~~TV~~lK~~I~~~~gi~ 37 (252)
|+.++..-+++. -.+.|++.+|+.++.+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 677887766654 4588999999999999999999854
No 272
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=36.39 E-value=1.2e+02 Score=21.52 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=39.4
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..++....||.+|-.. .+++....-+-.+|..+.-+. ..++ -+++|+.|.++-
T Consensus 27 ~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~~-w~~t-~L~egD~IEIv~ 79 (84)
T PRK06083 27 SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPRSE-WQST-VLSSGDAISLFQ 79 (84)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCHHH-cCcc-cCCCCCEEEEEE
Confidence 5566677888877765 477777777889999885443 4555 699999998874
No 273
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=35.91 E-value=62 Score=22.09 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=29.7
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATG 149 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 149 (252)
..+.+.++.|-.+|+.+|..+++++....+|-|..
T Consensus 13 ~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 13 RRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 37778889999999999999999887777777764
No 274
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=35.39 E-value=85 Score=22.90 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcCe
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQK-LLATGR 48 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G~ 48 (252)
.+.+.|.|++++|=.++|..+++.+|+-+..-+ |...|+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 467899999999999999999999999887664 445553
No 275
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=33.04 E-value=62 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=18.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHh
Q psy1973 13 IFLDVNSEMSILELKNKINEAL 34 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~ 34 (252)
+.+.++.++|+.++|+.+.++-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 5788999999999999987763
No 276
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=32.82 E-value=88 Score=21.98 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=36.8
Q ss_pred cccHHHHHHHhhcccCCCCCCeEEEE--cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 122 EMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+..+|+.+..++++++...-+|+. .|.+++|+.-+... +..++.+++.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL----p~nT~l~~l~~ 72 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL----PDNTVLMLLEP 72 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC----CCCcEEEEECC
Confidence 56899999999999999766666654 79999887666655 34444455443
No 277
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=32.45 E-value=1.2e+02 Score=26.14 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALKIPVSDQKLL 44 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~ 44 (252)
..|.++++...|-.+|-++|+++.|+.|...+|+
T Consensus 190 ~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 190 PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp --EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 4689999999999999999999999999988885
No 278
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=32.32 E-value=2.5e+02 Score=22.16 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=41.4
Q ss_pred CEEEEEeCCCcEEEEEecC-CCCHHHHHHHHHHHh----CCCCCCe----EEE-EcCeecCCCccccccCCCCCCCEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNS-EMSILELKNKINEAL----KIPVSDQ----KLL-ATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~-~~TV~~lK~~I~~~~----gi~~~~q----~L~-~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
|+|+|.. +...+.+.... +.||.+|-++-..++ +..++.+ .|. -.|-.|+.+..|.+. +.+.+.|..
T Consensus 1 mkvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV--~dd~d~liA 77 (145)
T PF12053_consen 1 MKVTVCF-GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV--VDDRDQLIA 77 (145)
T ss_dssp -EEEEEE-TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH--S-TTEEEEE
T ss_pred CeEEEEe-CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe--ccChhhhhe
Confidence 8999977 55557777764 589999977765553 4444433 233 246688888889988 678888877
Q ss_pred EEe
Q psy1973 71 VVK 73 (252)
Q Consensus 71 ~~~ 73 (252)
+..
T Consensus 78 vyd 80 (145)
T PF12053_consen 78 VYD 80 (145)
T ss_dssp EEE
T ss_pred eec
Confidence 776
No 279
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=32.11 E-value=1.9e+02 Score=20.67 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=42.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--CCC--C-CeEEEEcC--eecCCCccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEAL-K--IPV--S-DQKLLATG--RPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~-g--i~~--~-~q~L~~~G--~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.-+.|+..+|+.++-.+++... | +++ . ..++.++| ..+..+.++.+- ||.+-..|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaea-gl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEA-GLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGH-T--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhc-CCCcceEEEEEEc
Confidence 4568999999999999998873 4 333 2 34667888 789999999999 9999998887654
No 280
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=31.78 E-value=1.4e+02 Score=21.32 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=38.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCee-c-CCCccccccC-CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLLATGRP-L-LDTKQILDYP-QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~-L-~d~~tL~~~~-~i~~~s~i~l~~~ 73 (252)
.+-|+.+.|++++...|.++.++.+++-..+|=+.. + ..+.++.+.= .-..+..+.+...
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys 81 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYC 81 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 457999999999999999999998776444443333 2 3334443220 0145667776654
No 281
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=30.30 E-value=1e+02 Score=22.17 Aligned_cols=35 Identities=9% Similarity=0.294 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Q psy1973 193 ILRDASYKFLRKYFTETQSNKIADEFIKEFNKSIS 227 (252)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~ 227 (252)
.+.+++..++...++.++..+++..++.+|+..+.
T Consensus 36 ~LLdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVD 70 (95)
T PF04363_consen 36 LLLDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVD 70 (95)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHH
Confidence 35677788889999999999999999999998764
No 282
>CHL00030 rpl23 ribosomal protein L23
Probab=30.07 E-value=94 Score=22.57 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=32.2
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcCe
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQK-LLATGR 48 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G~ 48 (252)
.+.+.|.|+.+.|=.++|+.|+..+|+.+..-+ +...|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 467999999999999999999999999886654 344554
No 283
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=29.89 E-value=82 Score=22.45 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=32.6
Q ss_pred eeeecCCcccHHHHHHHhhcccCCC-CCCeEEEE--cCe--ecCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIP-VSDQKLLA--TGR--PLLDTK 156 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~--~G~--~L~d~~ 156 (252)
-++.|.|..|+.+|-..++.++.+. ++...|++ +|. .|.|+.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 3889999999999999999999984 77777753 443 355553
No 284
>PF14055 NVEALA: NVEALA protein
Probab=29.74 E-value=22 Score=23.85 Aligned_cols=15 Identities=53% Similarity=0.740 Sum_probs=13.5
Q ss_pred hcccCChHHHHHHHH
Q psy1973 225 SISTLSLDDLEALAS 239 (252)
Q Consensus 225 ~~~~lsldd~er~a~ 239 (252)
.+..|.|+++|.||+
T Consensus 31 ~lsdL~L~NVEALA~ 45 (65)
T PF14055_consen 31 NLSDLALANVEALAS 45 (65)
T ss_pred ccchHHHHhHHHHhc
Confidence 588999999999994
No 285
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=29.60 E-value=1.2e+02 Score=22.44 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=28.5
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV 38 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~ 38 (252)
|+|-..+|.+..+.|..-.+-.++|.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 567778999999999999999999999999999987
No 286
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=28.45 E-value=1.6e+02 Score=21.06 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred CCcE-EEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--EcCe--ecCCCc
Q psy1973 9 QGQE-IFLDVNSEMSILELKNKINEALKIP-VSDQKLL--ATGR--PLLDTK 54 (252)
Q Consensus 9 ~g~~-~~~~v~~~~TV~~lK~~I~~~~gi~-~~~q~L~--~~G~--~L~d~~ 54 (252)
+|.+ .++.|.|..|+.+|=..++.++++. |+...|+ -+|. .|.|+.
T Consensus 11 sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 11 SGCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred CCceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 4555 6789999999999999999999984 5666664 3444 566653
No 287
>KOG2561|consensus
Probab=28.36 E-value=11 Score=35.36 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=51.3
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.++.+..-|=.++...|+.++||+-...+.+-+||+|.-.+||.+- |++....+.+++.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQ-glk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQ-GLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhh-hhhhhhHHHHHhc
Confidence 4445556677889999999999999999999999999999999999 9999888877766
No 288
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=28.19 E-value=3.8e+02 Score=26.82 Aligned_cols=51 Identities=8% Similarity=0.288 Sum_probs=40.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhc----ccCChHHHHHHHHhhhccccC
Q psy1973 197 ASYKFLRKYFTETQSNKIADEFIKEFNKSI----STLSLDDLEALASSYLMEEEC 247 (252)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~----~~lsldd~er~a~~~~~~~~~ 247 (252)
.+.+.....+.-+|++..++.+.++|-+-+ ..++|-.+.+.-+.+|+|..+
T Consensus 475 vir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~~i~~VLq~LL~E~Vs 529 (675)
T PRK12720 475 VLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVGKIAEILQRLVSERVS 529 (675)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCc
Confidence 444445668899999999999999987654 448899999999999988754
No 289
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=27.84 E-value=1.1e+02 Score=19.91 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=35.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEE
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
|+|.+.+|+... ++.+.|+.++=..|....+-..- .-..+|+..+-+.. +.++++|.+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl~~~------L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDLDHP------LEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEETTSB------B-SSEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCCCCC------cCCCCEEEE
Confidence 456668888655 77889999999999877642211 12357765543333 445555544
No 290
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=27.82 E-value=1.9e+02 Score=23.67 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHHH----HHhcccCChHHHHHHHH
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADEFIKEF----NKSISTLSLDDLEALAS 239 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~----~~~~~~lsldd~er~a~ 239 (252)
++++-.+..+|...-+++.+.+++.++.+.+ -..|..++.++|+++-.
T Consensus 17 ~pFelLVa~ILSQqTtd~nv~kA~~~L~~~~g~~tp~~La~a~~eeL~~lI~ 68 (177)
T TIGR03252 17 DPFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFS 68 (177)
T ss_pred ChHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCHHHHHcCCHHHHHHHHh
Confidence 5688889999999999999999999997766 45788999999988763
No 291
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=27.57 E-value=40 Score=21.96 Aligned_cols=11 Identities=55% Similarity=0.718 Sum_probs=8.6
Q ss_pred CChHHHHHHHH
Q psy1973 229 LSLDDLEALAS 239 (252)
Q Consensus 229 lsldd~er~a~ 239 (252)
+.|||+|+.|.
T Consensus 43 ~~Ld~lE~~aR 53 (54)
T PF12411_consen 43 MDLDDLERRAR 53 (54)
T ss_pred CCHHHHHHHhc
Confidence 55899998874
No 292
>PRK01777 hypothetical protein; Validated
Probab=27.24 E-value=2.5e+02 Score=20.40 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=34.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVS--D-----QKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~--~-----q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
..+++..+.||.++-.. .|++.. . -.+.-+|+...- +. -+++|+.|-+...
T Consensus 19 ~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~-~L~dGDRVeIyrP 76 (95)
T PRK01777 19 QRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TD-VLRDGDRVEIYRP 76 (95)
T ss_pred EEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CC-cCCCCCEEEEecC
Confidence 66789999999987766 466554 2 245566765532 34 4788899887643
No 293
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=27.09 E-value=6.5e+02 Score=25.19 Aligned_cols=53 Identities=9% Similarity=0.265 Sum_probs=37.7
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.+.+..+.|+.++--.|....|.-.. .-.-+|+... .++ -+++|++|.++..+
T Consensus 371 ~~~lp~gst~~DfAy~ih~~~g~~~~--~a~vng~~v~-----l~~-~l~~gd~vei~t~~ 423 (683)
T TIGR00691 371 VVELPSGSTPVDFAYAVHTDVGNKCT--GAKVNGKIVP-----LDK-ELENGDVVEIITGK 423 (683)
T ss_pred EEEcCCCCCHHHHHHHHhHHhHhcee--EEEECCEECC-----CCc-cCCCCCEEEEEeCC
Confidence 56778899999999888877654322 1125666332 467 79999999999776
No 294
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=27.02 E-value=82 Score=22.14 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHh
Q psy1973 13 IFLDVNSEMSILELKNKINEAL 34 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~ 34 (252)
+.+.++.++|+.++|..+.+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4678999999999999997763
No 295
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.66 E-value=1.2e+02 Score=25.30 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHh
Q psy1973 195 RDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDLEALASS 240 (252)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~ 240 (252)
...+++.+-.+..-+..++..++|+++++++-.+=...++|||=+.
T Consensus 61 ~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~ 106 (201)
T COG1422 61 ITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEK 106 (201)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455555555666667778889999999998888899999998654
No 296
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=26.46 E-value=31 Score=23.74 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=30.0
Q ss_pred cccccCCCCCCEEEEEEecCccccccccCCCCCcchhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccC
Q psy1973 158 ILDYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTL 229 (252)
Q Consensus 158 L~~y~~i~~gs~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~l 229 (252)
+..+ |+..|+.|.+......--- .+..+ ... -+.+-.+++++++++|...|+.|
T Consensus 19 ~~~l-gl~~Gd~v~v~~~~~~iii---~~~~~-~~~-------------~~~~~~~~~~~~~~~y~~~l~~L 72 (74)
T TIGR02609 19 LESL-GLKEGDTLYVDEEEGGLKL---KRFDE-GKE-------------LEKKMQMAVERAMSKYDEALKEL 72 (74)
T ss_pred HHHc-CcCCCCEEEEEEECCEEEE---EECCC-Ccc-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567 8999999988765410000 00000 011 01222347888999998888765
No 297
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=26.42 E-value=67 Score=18.45 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q psy1973 196 DASYKFLRKYFTETQSNKIADEFIKEFNKS 225 (252)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~ 225 (252)
+.+..+...+|+.+.+..++.....+.+..
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A 32 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNNNVERA 32 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHH
Confidence 467888899999988888888765444443
No 298
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=25.63 E-value=1.2e+02 Score=21.27 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=32.9
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCC
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLD 154 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d 154 (252)
.|+. ..+.+.+++|+.++-+.+..+.++.+..--|-.+-..++|
T Consensus 8 n~~~--~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 8 DNQP--VLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred CCce--EEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 3454 3889999999999999999999998876665543333443
No 299
>KOG2086|consensus
Probab=25.27 E-value=62 Score=29.68 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=42.7
Q ss_pred eeeecCCcccHHHHHHHhhccc-CCCCCCeEEE--EcCeecCCCC-CcccccCCCCCCEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEAL-KIPVSDQKLL--ATGRPLLDTK-QILDYPQIKEGTKLN 171 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~G~~L~d~~-tL~~y~~i~~gs~l~ 171 (252)
....++.+.||.+++..|...- +-+...+.|+ |--+.|.|.. ||.+. |+.+-..+.
T Consensus 318 lV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~A-gL~Nsvlvq 377 (380)
T KOG2086|consen 318 LVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEA-GLLNSVLVQ 377 (380)
T ss_pred eeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhc-cchhhhhhh
Confidence 3888999999999999998764 3445556665 5678888765 99999 998765543
No 300
>KOG3439|consensus
Probab=25.08 E-value=94 Score=23.40 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecC
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL 153 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~ 153 (252)
...|++++|++.+-..+....+++..++-.+|-.....
T Consensus 48 k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFA 85 (116)
T KOG3439|consen 48 KFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFA 85 (116)
T ss_pred eEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccC
Confidence 67888999999999999999999999999998776554
No 301
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=24.87 E-value=1.3e+02 Score=21.74 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=28.7
Q ss_pred cccceeeeecC---CcccHHHHHHHhhcccCCCC-CCeEEEEcC
Q psy1973 110 NKIADEFIKVN---SEMSILELKNKINEALKIPV-SDQKLLATG 149 (252)
Q Consensus 110 g~~~~~~i~v~---~~~tV~~lK~~i~~~~gip~-~~q~L~~~G 149 (252)
|.+++|.+... ++.+...|+++|++.++++. ....|.|..
T Consensus 9 ~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 9 GTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 33433455543 57899999999999999987 556666654
No 302
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=24.81 E-value=1.7e+02 Score=20.46 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=34.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVS--DQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~--~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
...|- -.+..+|+.+..+++.++.. ...|.-+|..+. +.-+..+ +..++.|++.
T Consensus 15 k~GV~-A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVt-EeyF~tL----p~nT~lmvL~ 70 (77)
T cd06535 15 KYGVA-AKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVT-EEYFPTL----PDNTELVLLT 70 (77)
T ss_pred eEeEE-cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEeh-HHHHhcC----CCCcEEEEEc
Confidence 34443 34799999999999999854 444556788883 4444444 3445555555
No 303
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=24.65 E-value=1.1e+02 Score=20.84 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=29.3
Q ss_pred eecCCcccHHHHHHHhhcccCCCCCCeEEEEcC
Q psy1973 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATG 149 (252)
Q Consensus 117 i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 149 (252)
+.+..+.+..+|..+|+..++.+.....|.|..
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 788888899999999999999997888888864
No 304
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=24.58 E-value=63 Score=24.49 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHH
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKI 30 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I 30 (252)
|+|.+.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7889977 6888999999888888777664
No 305
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=24.20 E-value=1.2e+02 Score=20.36 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCC
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLS 230 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~ls 230 (252)
...|..|...+...++..++.+....++..|.+.+....
T Consensus 26 ~~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~~~~~ 64 (85)
T PF10545_consen 26 EEAWQEIARELGKEFSVDDCKKRWKNLRDRYRRELKKIK 64 (85)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999998889999999999999999988766543
No 306
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=24.11 E-value=2.4e+02 Score=23.15 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHhhhc
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDLEALASSYLM 243 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~~~~ 243 (252)
+.+-..+..++..+. .+.+++++.+..|-+.++-=|=+|+.|+|....+
T Consensus 35 EEFSa~IG~vLd~yL---~yQKafnE~MekYLe~lNlPSr~DiarvA~lvin 83 (189)
T TIGR02132 35 EEFSALMGNVLDLNL---FYQKALNDTTGNYLEQVNVPTKEDIANVASLVIN 83 (189)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 344455555655544 4778999999999999999999999999987653
No 307
>COG4495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=3.1e+02 Score=20.42 Aligned_cols=31 Identities=0% Similarity=0.007 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Q psy1973 197 ASYKFLRKYFTETQSNKIADEFIKEFNKSIS 227 (252)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~ 227 (252)
.|..+.-++|.+.+-.-..+++.+.|++.+.
T Consensus 64 ~I~eVv~~Gy~D~~e~~~~eqL~qa~~~~~a 94 (109)
T COG4495 64 NIDEVVFEGYEDDDEALRFEQLKQAKKEYLA 94 (109)
T ss_pred chHHHHhhhcccchHHHHHHHHHHHHhhhch
Confidence 5667777777777766888888888876553
No 308
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=23.43 E-value=1.3e+02 Score=23.41 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=30.2
Q ss_pred chhHHHHHHHHH---hcCChHHHHHHHHHHH----------HHHHHhcccCChHHHHHH
Q psy1973 192 TILRDASYKFLR---KYFTETQSNKIADEFI----------KEFNKSISTLSLDDLEAL 237 (252)
Q Consensus 192 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~~----------k~~~~~~~~lsldd~er~ 237 (252)
+.+|+.|...|. +...+.-...-++++. .++.+.|..+|.|+|+.|
T Consensus 66 D~Iy~~ID~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~eeW~~I 124 (133)
T PF06424_consen 66 DRIYESIDRRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEEEWENI 124 (133)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHHHHhcC
Confidence 678999999882 2333333333333222 468889999999999865
No 309
>KOG1364|consensus
Probab=23.31 E-value=88 Score=28.37 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=51.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEEEcC---eec--CCCccccccCCCCCCCE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEAL-KIPVSDQKLLATG---RPL--LDTKQILDYPQIKEGTK 67 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~-gi~~~~q~L~~~G---~~L--~d~~tL~~~~~i~~~s~ 67 (252)
.|.||..+|+.....+-..++|.-|-..++.+. |.+-...+|+++- +.| ..+.|+.++ ||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~ea-GL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEA-GLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHh-ccCcccc
Confidence 478999999886666678899999988887775 6666777888765 555 457899999 9988765
No 310
>PF14702 hGDE_central: central domain of human glycogen debranching enzyme
Probab=23.05 E-value=1.8e+02 Score=25.26 Aligned_cols=29 Identities=31% Similarity=0.244 Sum_probs=24.8
Q ss_pred HHHHHHHhcccCChHHHHHHHHhhhcccc
Q psy1973 218 FIKEFNKSISTLSLDDLEALASSYLMEEE 246 (252)
Q Consensus 218 ~~k~~~~~~~~lsldd~er~a~~~~~~~~ 246 (252)
+..+....+..|+|-|+..+-.++-.||.
T Consensus 171 ~~~~~~~~~~~L~L~dlN~lLyrc~~EEr 199 (260)
T PF14702_consen 171 IKSGADEAFSNLSLVDLNFLLYRCDSEER 199 (260)
T ss_pred chHHHHHHHHhCCHHHHHHHHhcCcHHHh
Confidence 45678888999999999999999888774
No 311
>KOG1722|consensus
Probab=23.03 E-value=1.3e+02 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=32.9
Q ss_pred chhHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhcccCChHHH
Q psy1973 192 TILRDASYKFL-RKYFTETQSNKIADEFIKEFNKSISTLSLDDL 234 (252)
Q Consensus 192 ~~~~~~~~~~l-~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~ 234 (252)
...|..+.+.- +.+-.++.+.+-.+.-.+.|++.+.+.|||.|
T Consensus 48 ~l~WTvLyR~khkKg~~ee~~kkrtrrt~k~~qRaI~GasL~~I 91 (155)
T KOG1722|consen 48 RLAWTVLYRKKHKKGIQEEAAKKRTRRTVKKFQRAIVGASLDVI 91 (155)
T ss_pred hhhHHHHHHHHhhcchhHHHHHHHhhhhhhhhhhhhccccHHHH
Confidence 45677777664 44566666667777777889999999999999
No 312
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=22.93 E-value=1.8e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcCee
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQK-LLATGRP 49 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G~~ 49 (252)
...+.|.|+++.|=.++|..|+..+|+.+..-+ +...|+.
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~ 62 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKP 62 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcc
Confidence 467999999999999999999999999987664 4455643
No 313
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=22.86 E-value=3.9e+02 Score=26.89 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhccc-----CChHHHHHHHHhhhccccC
Q psy1973 197 ASYKFLRKYFTETQSNKIADEFIKEFNKSIST-----LSLDDLEALASSYLMEEEC 247 (252)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~-----lsldd~er~a~~~~~~~~~ 247 (252)
.+.+.....++-++++..++.+.++|-.-+.. ++|..+-+.-+.+|+|...
T Consensus 495 vir~~a~ellgrQEvq~LLD~L~~~~p~LVeElvp~~l~l~~Iq~VLq~LL~E~VS 550 (697)
T PRK06012 495 VIKNHAAELLGRQEVQQLLDRLAKEYPKLVEELVPKVLSLGTLQKVLQNLLKERVS 550 (697)
T ss_pred HHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHhccccCCHHHHHHHHHHHHhCCCc
Confidence 44444566788999999999999998775555 8999999999999988754
No 314
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=22.73 E-value=2e+02 Score=20.57 Aligned_cols=38 Identities=11% Similarity=0.323 Sum_probs=30.0
Q ss_pred cccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCe
Q psy1973 110 NKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGR 150 (252)
Q Consensus 110 g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~ 150 (252)
|.+ ..+.+.++.+-.+|..+|.+++++. ...++-|...
T Consensus 11 ~Dv--~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 11 DDT--RYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 455 4889999999999999999999995 4555556554
No 315
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=22.47 E-value=2.4e+02 Score=22.42 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=32.0
Q ss_pred EEEEecCCC-CHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCE
Q psy1973 13 IFLDVNSEM-SILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTK 67 (252)
Q Consensus 13 ~~~~v~~~~-TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~ 67 (252)
+.+++.+.+ ++..+++-..+.+-+. .. ++-|+-+....|+.+| ++-|.-
T Consensus 85 i~~eie~e~~~~e~ie~ic~e~lPf~---y~-v~vG~F~r~kpTVTDy--~KyG~~ 134 (165)
T COG4055 85 IILEIEDEDETMEKIEEICDEMLPFG---YE-VRVGKFTRRKPTVTDY--IKYGED 134 (165)
T ss_pred EEEEecCcHhHHHHHHHHHHHhCCCc---ee-eeeeeeeccCCcchhh--hhhCcc
Confidence 455666654 6776665444443222 22 4678899999999999 777765
No 316
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=22.20 E-value=1.1e+02 Score=21.70 Aligned_cols=56 Identities=13% Similarity=0.312 Sum_probs=36.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCC-------eEEEEcCe-ec------CCCccccccCCCCCCCEEEEEE
Q psy1973 15 LDVNSEMSILELKNKINEALKIPVSD-------QKLLATGR-PL------LDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 15 ~~v~~~~TV~~lK~~I~~~~gi~~~~-------q~L~~~G~-~L------~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
++++++.|+.+|-+.+.++..+.-.. -.|++.+- .| .=+++|.++ +.+|..|.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL--~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL--LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT--HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH--hcCCCEEEEEC
Confidence 57899999999999999985443333 34444432 12 125778877 77788877754
No 317
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=21.82 E-value=4.1e+02 Score=21.10 Aligned_cols=65 Identities=25% Similarity=0.148 Sum_probs=43.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCC-CCeEEEEc---C---eecCCCCCcccccCCC-CCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPV-SDQKLLAT---G---RPLLDTKQILDYPQIK-EGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~---G---~~L~d~~tL~~y~~i~-~gs~l~l~~~~ 176 (252)
.|.. ..+.++++.||.++-..++.+.|++. ....|.+. + ..+....++.+. ..+ ....+++..|-
T Consensus 12 dg~~--~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~l~fr~r~ 84 (207)
T smart00295 12 DGTT--LEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQ-DVKSEPLTLYFRVKF 84 (207)
T ss_pred CCCE--EEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHh-cCCCCCcEEEEEEEE
Confidence 3454 48889999999999999999999964 23334432 1 245566677777 554 34566666553
No 318
>KOG4261|consensus
Probab=21.62 E-value=1.4e+02 Score=30.20 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=77.8
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEE------cCeecCCCccccccCCCCCCCEEEEEEeccccccc
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALK---IPVSDQKLLA------TGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESS 80 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~g---i~~~~q~L~~------~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~~~ 80 (252)
+-..++.+.|+.+|.|-=+.|.+++. .-+.+..|+. +|--|+.+.+|.+| -+.+++++-..-+
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y-~~~n~d~~ey~~k------- 83 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYY-MLRNGDTLEYKRK------- 83 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHH-HHhcccccchhhh-------
Confidence 44578899999999998888888753 2255565553 35568899999999 8888888765332
Q ss_pred ccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCC-CCCeEEEEcCe
Q psy1973 81 QSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIP-VSDQKLLATGR 150 (252)
Q Consensus 81 ~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~~G~ 150 (252)
.-...++++ .|.. -++.|+.+.+|.+|---|..+.||. .+...|+-.-.
T Consensus 84 --------------~r~lkvrml-----dg~v--kti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~ 133 (1003)
T KOG4261|consen 84 --------------QRPLKVRML-----DGAV--KTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDI 133 (1003)
T ss_pred --------------cccceeeec-----cccc--ceeeecccccHHHHHHHHHhccCccchhhhhhhHHHH
Confidence 011245555 3444 3888889999999999999998884 44444444333
No 319
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=21.52 E-value=2.2e+02 Score=19.88 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHhh
Q psy1973 207 TETQSNKIADEFIKEFNKSISTLSLDDLEALASSY 241 (252)
Q Consensus 207 ~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~~ 241 (252)
+.+.+.+++..|+.+++..+..+|-+|-+.+...+
T Consensus 45 ~~e~~~~~~~~~~~e~~~fikt~s~~DQ~~y~~~~ 79 (82)
T PF14747_consen 45 NKEAAKKFFEKYKAEVDAFIKTQSEEDQTAYNAFV 79 (82)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 34456689999999999999999999987766543
No 320
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=21.39 E-value=1.8e+02 Score=20.26 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=35.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC---CCCeEE-EEcCeecC
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIP---VSDQKL-LATGRPLL 51 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~---~~~q~L-~~~G~~L~ 51 (252)
+.++. +|+.+.+.|+.++++.-+-++...+.|.+ +..+++ .++|..+.
T Consensus 3 ~~~~I-ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 3 VTLLV-NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred EEEEE-CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 44544 88899999999999988888888888855 334455 57776553
No 321
>KOG4598|consensus
Probab=21.39 E-value=5.8e+02 Score=25.92 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEE----cCeec--CCCCCcccccCCCCCCEEEEEEecCccccccccCC-
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLA----TGRPL--LDTKQILDYPQIKEGTKLNLVVKRALKESSQSVAG- 187 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~G~~L--~d~~tL~~y~~i~~gs~l~l~~~~~~~~~~~~~~~- 187 (252)
+.+.|....++..+|++|++..+++.+..++.- +|..+ .++.+|+.. -+|.+|.+-+-++-++.. --.+
T Consensus 879 ~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~---~~~~~iTI~LG~~Lk~dE-~~~KI 954 (1203)
T KOG4598|consen 879 HKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA---FQSCFITIKLGAPLKSDE-KMMKI 954 (1203)
T ss_pred eeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh---cccceEEEEecCcCCCCc-eeeEE
Confidence 578999999999999999999999999888863 23333 355677766 367777776654322211 0000
Q ss_pred ---------CCCcchhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHH
Q psy1973 188 ---------GSNVTILRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDL 234 (252)
Q Consensus 188 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~ 234 (252)
..+++.+.+ -++....+..+++.-+-...++.+.....||.+..
T Consensus 955 ~~L~~l~NE~e~~k~l~e---~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~ 1007 (1203)
T KOG4598|consen 955 ILLDILENERENWKPLFE---LVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRL 1007 (1203)
T ss_pred EeehhhhccccCCcchhh---hhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 122344333 33456677777775444444555555566666654
No 322
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=20.87 E-value=2.3e+02 Score=19.69 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=48.1
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEE-EcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLL-ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.+.|.+......+-.-.++++++|+..--++ -.|--+...++-..+ -++.|+.+.|+-|.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnv-flkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNV-FLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccce-eeecCCEeeecccc
Confidence 5577777777777788889999987666655 567778888899999 89999999998764
No 323
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=20.70 E-value=3.5e+02 Score=19.81 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE
Q psy1973 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKL 43 (252)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L 43 (252)
..+..-.+.|++.+|+.++-+.+-.++.+.-+-+++
T Consensus 14 p~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kF 49 (96)
T cd01778 14 PKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKF 49 (96)
T ss_pred cCCceeEEEEecCCcHHHHHHHHHHhheeccCCcce
Confidence 356667789999999999999999999986655554
No 324
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=20.52 E-value=90 Score=20.41 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=21.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE 32 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~ 32 (252)
|.|++.+.+|..|.++...-.--.-|+..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 78999999999999885543334445566654
No 325
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.14 E-value=2.9e+02 Score=24.93 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=39.2
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.+++..+.||.+|-+. .+++.+...+.++|+.+..+. -.++ -+++|+.|.++--
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~-w~~t-~LkeGD~IEII~~ 62 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRSE-YGQV-ALEEGDELEIVHF 62 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHHH-cCcc-ccCCCCEEEEEEE
Confidence 4566677888877754 478888888889999886443 3455 5888888887754
Done!