Query psy1973
Match_columns 252
No_of_seqs 323 out of 2067
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:58:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 2.8E-35 9.7E-40 236.3 12.9 150 1-176 3-154 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 7.3E-35 2.5E-39 236.9 10.8 149 1-176 21-169 (172)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 4.3E-33 1.5E-37 221.3 13.2 149 1-176 1-149 (152)
4 3plu_A Ubiquitin-like modifier 99.8 5.1E-19 1.7E-23 127.6 9.6 71 1-72 22-92 (93)
5 3phx_B Ubiquitin-like protein 99.8 9.5E-19 3.3E-23 123.6 10.0 73 1-74 5-77 (79)
6 2kk8_A Uncharacterized protein 99.8 1E-18 3.5E-23 125.2 8.7 72 1-73 11-83 (84)
7 4fbj_B NEDD8; effector-HOST ta 99.8 3.1E-18 1E-22 123.7 10.0 73 1-74 1-73 (88)
8 2kdi_A Ubiquitin, vacuolar pro 99.8 1.9E-19 6.5E-24 136.3 3.5 104 1-127 10-113 (114)
9 4dwf_A HLA-B-associated transc 99.8 3.9E-18 1.3E-22 123.5 9.9 72 1-74 6-77 (90)
10 2lxa_A Ubiquitin-like protein 99.8 1.5E-18 5E-23 125.0 6.9 73 1-74 2-78 (87)
11 3v6c_B Ubiquitin; structural g 99.7 5.8E-18 2E-22 122.9 9.4 72 1-73 18-89 (91)
12 1yx5_B Ubiquitin; proteasome, 99.7 7.6E-18 2.6E-22 124.0 10.0 73 1-74 1-73 (98)
13 1uh6_A Ubiquitin-like 5; beta- 99.7 2.9E-18 9.8E-23 125.9 7.3 71 1-72 29-99 (100)
14 2faz_A Ubiquitin-like containi 99.7 1E-17 3.4E-22 118.0 9.8 73 1-74 3-77 (78)
15 1ndd_A NEDD8, protein (ubiquit 99.7 1.3E-17 4.6E-22 116.3 10.3 73 1-74 1-73 (76)
16 3m62_B UV excision repair prot 99.7 4.1E-18 1.4E-22 127.3 8.1 73 1-74 2-74 (106)
17 4eew_A Large proline-rich prot 99.7 9.4E-18 3.2E-22 120.9 9.6 71 1-73 18-88 (88)
18 1uel_A HHR23B, UV excision rep 99.7 3.2E-17 1.1E-21 120.0 11.8 73 1-74 1-76 (95)
19 3a9j_A Ubiquitin; protein comp 99.7 2.8E-17 9.6E-22 114.7 10.6 73 1-74 1-73 (76)
20 4a20_A Ubiquitin-like protein 99.7 1.1E-17 3.9E-22 122.9 8.8 73 1-74 20-96 (98)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.9E-17 9.9E-22 120.2 10.6 73 1-74 2-74 (96)
22 3n3k_B Ubiquitin; hydrolase, p 99.7 1.8E-17 6.2E-22 118.4 9.3 73 1-74 4-76 (85)
23 4hcn_B Polyubiquitin, ubiquiti 99.7 2E-17 6.7E-22 121.8 9.7 73 1-74 23-95 (98)
24 3dbh_I NEDD8; cell cycle, acti 99.7 1.2E-17 4E-22 120.2 8.3 73 1-74 13-85 (88)
25 2wyq_A HHR23A, UV excision rep 99.7 3.1E-17 1.1E-21 117.3 10.3 73 1-74 6-81 (85)
26 1sif_A Ubiquitin; hydrophobic 99.7 2.8E-17 9.5E-22 118.6 9.9 73 1-74 10-82 (88)
27 2uyz_B Small ubiquitin-related 99.7 1.6E-17 5.4E-22 117.3 8.0 73 1-74 4-76 (79)
28 2hj8_A Interferon-induced 17 k 99.7 1.5E-17 5.1E-22 120.1 7.8 73 1-74 5-77 (88)
29 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.2E-17 1.1E-21 117.0 9.4 73 1-74 4-76 (85)
30 2dzi_A Ubiquitin-like protein 99.7 3.2E-17 1.1E-21 116.0 9.0 73 1-74 8-80 (81)
31 2bwf_A Ubiquitin-like protein 99.7 5.5E-17 1.9E-21 113.7 10.1 71 1-73 5-75 (77)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4E-17 1.4E-21 117.3 9.2 73 1-74 8-80 (87)
33 2fnj_B Transcription elongatio 99.7 4.9E-17 1.7E-21 122.7 9.6 73 1-74 1-81 (118)
34 4ajy_B Transcription elongatio 99.7 7.2E-17 2.5E-21 121.3 10.2 73 1-74 1-81 (118)
35 1wy8_A NP95-like ring finger p 99.7 7.1E-17 2.4E-21 116.5 9.8 73 1-74 8-82 (89)
36 3plu_A Ubiquitin-like modifier 99.7 2.2E-18 7.5E-23 124.3 1.7 73 94-174 20-92 (93)
37 1wyw_B Ubiquitin-like protein 99.7 4E-17 1.4E-21 120.0 8.3 73 1-74 22-94 (97)
38 2kan_A Uncharacterized protein 99.7 7.2E-17 2.5E-21 117.9 9.0 72 1-74 16-88 (94)
39 3vdz_A Ubiquitin-40S ribosomal 99.7 1.1E-16 3.6E-21 120.6 10.0 73 1-74 36-108 (111)
40 1ttn_A DC-UBP, dendritic cell- 99.7 6.5E-17 2.2E-21 120.8 8.6 73 1-74 24-96 (106)
41 3l0w_B Monoubiquitinated proli 99.7 5.4E-17 1.8E-21 131.0 8.5 73 1-74 1-73 (169)
42 4eew_A Large proline-rich prot 99.7 4.2E-18 1.4E-22 122.8 1.1 73 94-175 16-88 (88)
43 3m62_B UV excision repair prot 99.7 1.4E-17 4.9E-22 124.3 3.7 74 96-177 2-75 (106)
44 3b1l_X E3 ubiquitin-protein li 99.5 3.2E-18 1.1E-22 119.9 0.0 73 1-74 1-73 (76)
45 2l7r_A Ubiquitin-like protein 99.7 1.3E-16 4.6E-21 116.2 8.2 71 1-74 20-90 (93)
46 3phx_B Ubiquitin-like protein 99.7 1.6E-17 5.3E-22 117.3 3.0 73 96-176 5-77 (79)
47 2lxa_A Ubiquitin-like protein 99.7 1.2E-17 4.1E-22 120.2 1.4 72 97-176 3-78 (87)
48 2klc_A Ubiquilin-1; ubiquitin- 99.7 4.7E-16 1.6E-20 115.0 10.0 72 1-74 26-97 (101)
49 1wx7_A Ubiquilin 3; ubiquitin- 99.7 4.8E-16 1.6E-20 116.0 10.1 73 1-75 18-90 (106)
50 3q3f_A Ribonuclease/ubiquitin 99.7 3.7E-17 1.3E-21 133.7 4.3 73 1-74 106-178 (189)
51 1v2y_A 3300001G02RIK protein; 99.7 9.2E-17 3.1E-21 119.2 5.4 73 1-74 8-96 (105)
52 1yqb_A Ubiquilin 3; structural 99.6 3.4E-16 1.2E-20 115.6 8.4 72 1-74 23-94 (100)
53 4a20_A Ubiquitin-like protein 99.6 3.7E-17 1.3E-21 120.2 3.1 77 94-176 18-96 (98)
54 2ojr_A Ubiquitin; lanthide-bin 99.6 8.1E-16 2.8E-20 115.7 10.5 73 1-74 36-108 (111)
55 4dwf_A HLA-B-associated transc 99.6 2.4E-17 8.1E-22 119.3 2.0 73 96-177 6-78 (90)
56 4fbj_B NEDD8; effector-HOST ta 99.6 3.7E-17 1.3E-21 118.0 2.9 65 109-176 9-73 (88)
57 2kk8_A Uncharacterized protein 99.6 1.8E-17 6.1E-22 118.6 1.1 74 95-176 10-84 (84)
58 1wju_A NEDD8 ultimate buster-1 99.6 3.3E-16 1.1E-20 114.9 7.8 71 2-73 17-91 (100)
59 1v5o_A 1700011N24RIK protein; 99.6 3.8E-16 1.3E-20 115.7 8.2 73 1-74 8-85 (102)
60 3rt3_B Ubiquitin-like protein 99.6 5.8E-16 2E-20 123.5 9.8 73 1-74 82-154 (159)
61 2faz_A Ubiquitin-like containi 99.6 4.5E-17 1.6E-21 114.6 2.9 74 96-176 3-77 (78)
62 1wgh_A Ubiquitin-like 3, HCG-1 99.6 7E-16 2.4E-20 116.5 9.6 73 1-74 17-99 (116)
63 3v6c_B Ubiquitin; structural g 99.6 3.2E-17 1.1E-21 119.0 2.0 76 93-176 15-90 (91)
64 4dbg_A Ranbp-type and C3HC4-ty 99.6 9.8E-16 3.4E-20 113.3 10.0 72 1-73 25-99 (105)
65 1wx8_A Riken cDNA 4931431F19; 99.6 2.2E-16 7.5E-21 115.6 6.3 72 1-74 18-89 (96)
66 1j8c_A Ubiquitin-like protein 99.6 1E-15 3.5E-20 117.5 10.1 72 1-74 33-104 (125)
67 1v5t_A 8430435I17RIK protein; 99.6 5.9E-16 2E-20 112.1 7.4 72 1-74 8-83 (90)
68 1uh6_A Ubiquitin-like 5; beta- 99.6 3E-17 1E-21 120.5 0.1 72 95-174 28-99 (100)
69 3m63_B Ubiquitin domain-contai 99.6 2.7E-16 9.2E-21 116.4 5.1 71 1-73 29-99 (101)
70 1we6_A Splicing factor, putati 99.6 8.3E-16 2.8E-20 115.6 7.7 73 1-74 28-104 (111)
71 2kd0_A LRR repeats and ubiquit 99.6 2.2E-15 7.6E-20 107.9 9.5 70 3-73 14-83 (85)
72 1wgg_A Ubiquitin carboxyl-term 99.6 7.8E-16 2.7E-20 112.8 7.2 71 1-74 8-79 (96)
73 1uel_A HHR23B, UV excision rep 99.6 3E-16 1E-20 114.8 4.4 65 109-176 9-76 (95)
74 1se9_A Ubiquitin family; ubiqu 99.6 1.9E-15 6.4E-20 115.3 8.8 73 1-74 17-103 (126)
75 2gow_A HCG-1 protein, ubiquiti 99.6 1.2E-15 4.2E-20 116.7 7.8 73 1-74 18-100 (125)
76 1wia_A Hypothetical ubiquitin- 99.6 2.3E-15 7.8E-20 110.0 8.9 70 1-74 8-78 (95)
77 1wju_A NEDD8 ultimate buster-1 99.6 7E-16 2.4E-20 113.2 6.0 59 115-174 32-90 (100)
78 3u5e_m 60S ribosomal protein L 99.6 5.6E-17 1.9E-21 125.1 0.0 73 1-74 1-73 (128)
79 4hcn_B Polyubiquitin, ubiquiti 99.6 1.4E-16 4.8E-21 117.2 2.0 77 92-176 19-95 (98)
80 2fnj_B Transcription elongatio 99.6 6.7E-17 2.3E-21 121.9 0.3 61 115-176 14-81 (118)
81 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 2.6E-16 9E-21 115.1 3.4 73 96-176 2-74 (96)
82 1wgd_A Homocysteine-responsive 99.6 2.4E-15 8.4E-20 109.4 8.2 74 1-74 8-86 (93)
83 4ajy_B Transcription elongatio 99.6 1.1E-15 3.7E-20 114.9 6.0 61 115-176 14-81 (118)
84 1sif_A Ubiquitin; hydrophobic 99.6 2.7E-16 9.2E-21 113.4 2.6 75 94-176 8-82 (88)
85 1x1m_A Ubiquitin-like protein 99.6 3.1E-15 1.1E-19 111.8 8.4 73 1-74 13-100 (107)
86 3b1l_X E3 ubiquitin-protein li 99.4 9E-17 3.1E-21 112.4 0.0 73 96-176 1-73 (76)
87 1ndd_A NEDD8, protein (ubiquit 99.6 4.1E-16 1.4E-20 108.7 3.3 65 109-176 9-73 (76)
88 3n3k_B Ubiquitin; hydrolase, p 99.6 4.4E-16 1.5E-20 111.1 3.1 73 96-176 4-76 (85)
89 2wyq_A HHR23A, UV excision rep 99.6 3.6E-16 1.2E-20 111.7 2.5 73 96-176 6-81 (85)
90 3dbh_I NEDD8; cell cycle, acti 99.6 2.3E-16 7.9E-21 113.3 1.4 74 95-176 12-85 (88)
91 1wxv_A BAG-family molecular ch 99.6 5E-15 1.7E-19 107.5 8.4 72 1-74 8-85 (92)
92 3u5c_f 40S ribosomal protein S 99.6 1.5E-16 5.1E-21 126.0 0.0 73 1-74 1-73 (152)
93 3u30_A Ubiquitin, linear DI-ub 99.6 4.5E-15 1.6E-19 119.9 8.6 72 1-73 97-168 (172)
94 2uyz_B Small ubiquitin-related 99.6 2.2E-16 7.6E-21 111.3 0.3 65 109-176 12-76 (79)
95 3m63_B Ubiquitin domain-contai 99.6 5.7E-16 2E-20 114.6 2.4 94 53-176 7-100 (101)
96 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.5E-15 5.3E-20 114.6 4.7 76 94-177 15-100 (116)
97 3a9j_A Ubiquitin; protein comp 99.6 9.7E-16 3.3E-20 106.7 3.2 65 109-176 9-73 (76)
98 2daf_A FLJ35834 protein; hypot 99.6 1E-14 3.4E-19 109.1 8.6 72 2-74 17-89 (118)
99 2hj8_A Interferon-induced 17 k 99.6 2.6E-16 8.9E-21 113.5 -0.0 73 96-176 5-77 (88)
100 1wyw_B Ubiquitin-like protein 99.6 4.2E-16 1.4E-20 114.5 0.9 75 94-176 20-94 (97)
101 3mtn_B UBA80, ubcep1, ubiquiti 99.6 8.6E-16 2.9E-20 109.5 2.5 65 109-176 12-76 (85)
102 3b08_A Polyubiquitin-C, ubiqui 99.6 1.8E-14 6.1E-19 113.5 10.3 73 1-74 77-149 (152)
103 1we7_A SF3A1 protein; structur 99.6 1.2E-14 4.2E-19 109.9 8.9 73 1-74 26-108 (115)
104 1v86_A DNA segment, CHR 7, way 99.6 2.5E-15 8.7E-20 109.9 4.8 71 1-74 18-88 (95)
105 2dzm_A FAS-associated factor 1 99.6 4.4E-15 1.5E-19 109.3 6.1 72 1-74 9-82 (100)
106 1yx5_B Ubiquitin; proteasome, 99.5 1.8E-15 6E-20 111.2 3.7 65 109-176 9-73 (98)
107 2dzi_A Ubiquitin-like protein 99.5 7.1E-16 2.4E-20 109.0 1.5 73 96-176 8-80 (81)
108 2kan_A Uncharacterized protein 99.5 7.1E-16 2.4E-20 112.6 1.4 73 95-176 15-88 (94)
109 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 8.4E-16 2.9E-20 110.3 1.5 74 95-176 7-80 (87)
110 1wy8_A NP95-like ring finger p 99.5 1.6E-15 5.3E-20 109.4 2.9 73 96-176 8-82 (89)
111 2dzj_A Synaptic glycoprotein S 99.5 5.9E-15 2E-19 106.3 5.9 69 1-70 11-85 (88)
112 3vdz_A Ubiquitin-40S ribosomal 99.5 2.6E-15 8.9E-20 112.9 3.7 75 94-176 34-108 (111)
113 1ttn_A DC-UBP, dendritic cell- 99.5 1.2E-15 3.9E-20 113.9 1.7 75 94-176 22-96 (106)
114 2kdb_A Homocysteine-responsive 99.5 8.7E-15 3E-19 107.7 6.3 71 1-71 24-99 (99)
115 1wx7_A Ubiquilin 3; ubiquitin- 99.5 2.6E-15 8.8E-20 112.0 2.8 75 95-178 17-91 (106)
116 2bwf_A Ubiquitin-like protein 99.5 2.2E-14 7.7E-19 100.2 7.3 64 110-176 13-76 (77)
117 1yqb_A Ubiquilin 3; structural 99.5 1.8E-15 6.1E-20 111.7 1.6 74 94-176 21-94 (100)
118 3l0w_B Monoubiquitinated proli 99.5 4.4E-15 1.5E-19 119.8 3.6 66 109-177 9-74 (169)
119 3u5e_m 60S ribosomal protein L 99.5 1.1E-15 3.8E-20 117.8 0.0 73 96-176 1-73 (128)
120 2kdi_A Ubiquitin, vacuolar pro 99.5 3.3E-15 1.1E-19 112.8 2.6 74 95-176 9-82 (114)
121 2kjr_A CG11242; UBL, ubiquitin 99.5 7.4E-14 2.5E-18 101.9 9.3 70 1-71 16-93 (95)
122 1v2y_A 3300001G02RIK protein; 99.5 9.4E-16 3.2E-20 113.8 -1.0 74 96-177 8-97 (105)
123 4dbg_A Ranbp-type and C3HC4-ty 99.5 3E-14 1E-18 105.3 6.9 61 115-176 39-100 (105)
124 1se9_A Ubiquitin family; ubiqu 99.5 5.3E-15 1.8E-19 112.8 3.0 76 95-177 16-104 (126)
125 2kd0_A LRR repeats and ubiquit 99.5 3.2E-14 1.1E-18 101.8 6.5 65 109-176 20-84 (85)
126 3u5c_f 40S ribosomal protein S 99.5 2.1E-15 7.1E-20 119.4 0.0 73 96-176 1-73 (152)
127 1wia_A Hypothetical ubiquitin- 99.5 1.2E-14 4E-19 106.2 3.8 71 96-177 8-79 (95)
128 2gow_A HCG-1 protein, ubiquiti 99.5 1.1E-14 3.7E-19 111.4 3.5 74 96-177 18-101 (125)
129 3ai5_A Yeast enhanced green fl 99.5 7.8E-14 2.7E-18 121.8 9.4 72 1-73 234-305 (307)
130 2l7r_A Ubiquitin-like protein 99.5 3.3E-14 1.1E-18 103.5 5.7 74 93-176 17-90 (93)
131 4b6w_A Tubulin-specific chaper 99.5 5.3E-14 1.8E-18 100.9 6.7 71 2-73 4-83 (86)
132 4b6w_A Tubulin-specific chaper 99.5 4.3E-14 1.5E-18 101.3 6.2 61 115-176 17-84 (86)
133 2klc_A Ubiquilin-1; ubiquitin- 99.5 9.1E-14 3.1E-18 102.7 7.8 61 115-176 37-97 (101)
134 1wgd_A Homocysteine-responsive 99.5 1.1E-14 3.7E-19 105.9 2.4 76 96-176 8-86 (93)
135 2ojr_A Ubiquitin; lanthide-bin 99.5 1.7E-14 5.8E-19 108.4 3.3 74 95-176 35-108 (111)
136 3q3f_A Ribonuclease/ubiquitin 99.5 8.5E-15 2.9E-19 119.7 1.4 75 94-176 104-178 (189)
137 1x1m_A Ubiquitin-like protein 99.5 2.3E-14 8E-19 107.0 3.4 73 96-176 13-100 (107)
138 1v5o_A 1700011N24RIK protein; 99.5 6.8E-14 2.3E-18 103.5 5.8 64 110-176 21-85 (102)
139 2kj6_A Tubulin folding cofacto 99.4 2.2E-13 7.4E-18 99.8 8.1 71 2-73 16-95 (97)
140 1oqy_A HHR23A, UV excision rep 99.4 1.1E-13 3.9E-18 123.9 7.7 73 1-74 8-84 (368)
141 1wf9_A NPL4 family protein; be 99.4 1.1E-13 3.7E-18 103.3 6.3 71 1-73 8-94 (107)
142 1we7_A SF3A1 protein; structur 99.4 8.7E-14 3E-18 105.2 5.8 65 109-176 44-108 (115)
143 2daf_A FLJ35834 protein; hypot 99.4 9.4E-14 3.2E-18 103.8 5.7 62 115-177 29-90 (118)
144 1we6_A Splicing factor, putati 99.4 1.4E-13 4.8E-18 103.4 6.5 65 109-176 39-104 (111)
145 1wx8_A Riken cDNA 4931431F19; 99.4 5.1E-14 1.8E-18 102.9 4.0 73 95-176 17-89 (96)
146 1j8c_A Ubiquitin-like protein 99.4 1.7E-13 5.8E-18 105.1 7.0 74 94-176 31-104 (125)
147 1wgg_A Ubiquitin carboxyl-term 99.4 1.7E-13 5.8E-18 100.3 5.8 64 110-177 16-80 (96)
148 1oqy_A HHR23A, UV excision rep 99.4 1.8E-13 6.2E-18 122.6 6.7 74 95-176 7-84 (368)
149 1v6e_A Cytoskeleton-associated 99.4 5.1E-13 1.8E-17 97.5 7.9 72 1-73 8-87 (95)
150 2xzm_9 RPS31E; ribosome, trans 99.4 1.8E-14 6.1E-19 117.2 0.0 68 1-74 1-68 (189)
151 2io1_B Small ubiquitin-related 99.4 1.1E-12 3.8E-17 95.5 9.3 73 1-74 8-80 (94)
152 1v5t_A 8430435I17RIK protein; 99.4 2.5E-13 8.6E-18 98.2 5.5 65 109-176 15-83 (90)
153 1v86_A DNA segment, CHR 7, way 99.4 1.4E-14 4.8E-19 105.9 -1.3 64 109-176 25-88 (95)
154 2dzj_A Synaptic glycoprotein S 99.4 3.6E-14 1.2E-18 102.2 0.7 71 96-172 11-85 (88)
155 2kdb_A Homocysteine-responsive 99.4 2.5E-14 8.4E-19 105.2 -0.2 75 94-173 22-99 (99)
156 2dzm_A FAS-associated factor 1 99.4 2.9E-14 9.9E-19 104.9 -0.4 64 109-176 17-82 (100)
157 1wxv_A BAG-family molecular ch 99.4 5.2E-13 1.8E-17 96.8 6.0 61 115-176 19-85 (92)
158 2kzr_A Ubiquitin thioesterase 99.4 6.3E-13 2.2E-17 95.2 6.2 71 1-73 1-77 (86)
159 2kj6_A Tubulin folding cofacto 99.4 3.6E-13 1.2E-17 98.6 5.0 60 115-175 29-95 (97)
160 1wm3_A Ubiquitin-like protein 99.4 2.8E-12 9.5E-17 88.8 9.0 70 1-71 2-71 (72)
161 2kjr_A CG11242; UBL, ubiquitin 99.4 4.9E-13 1.7E-17 97.6 5.2 59 115-174 30-94 (95)
162 1t0y_A Tubulin folding cofacto 99.4 2.3E-12 7.8E-17 98.4 9.1 72 1-73 7-86 (122)
163 2xzm_9 RPS31E; ribosome, trans 99.3 9.3E-14 3.2E-18 113.0 0.0 68 96-176 1-68 (189)
164 2io0_B Small ubiquitin-related 99.3 7.1E-12 2.4E-16 90.6 9.5 73 1-74 6-78 (91)
165 3shq_A UBLCP1; phosphatase, hy 99.3 1.9E-12 6.4E-17 114.3 7.2 72 1-74 6-80 (320)
166 1v6e_A Cytoskeleton-associated 99.3 2.6E-12 9E-17 93.7 5.4 61 115-176 21-88 (95)
167 3a4r_A Nfatc2-interacting prot 99.3 1.5E-11 5.2E-16 86.5 9.1 70 1-71 8-78 (79)
168 3ai5_A Yeast enhanced green fl 99.3 5.1E-13 1.7E-17 116.7 1.8 76 93-176 231-306 (307)
169 2d07_B Ubiquitin-like protein 99.3 1.9E-11 6.4E-16 88.8 9.4 72 1-73 18-89 (93)
170 1wz0_A Ubiquitin-like protein 99.2 2.3E-11 7.8E-16 90.0 7.4 73 1-74 25-97 (104)
171 1wf9_A NPL4 family protein; be 99.2 1.1E-12 3.8E-17 97.8 -0.3 72 96-176 8-95 (107)
172 1t0y_A Tubulin folding cofacto 99.2 1.6E-11 5.5E-16 93.6 5.9 61 115-176 20-87 (122)
173 2eke_C Ubiquitin-like protein 99.2 6.8E-11 2.3E-15 87.6 8.8 71 1-73 32-102 (106)
174 2k8h_A Small ubiquitin protein 99.2 3.1E-11 1.1E-15 90.1 5.8 72 1-73 27-98 (110)
175 2kzr_A Ubiquitin thioesterase 99.1 8.5E-12 2.9E-16 89.2 0.9 64 109-176 9-78 (86)
176 1wjn_A Tubulin-folding protein 99.1 4.2E-10 1.4E-14 82.1 8.4 71 2-73 11-92 (97)
177 3shq_A UBLCP1; phosphatase, hy 99.0 8.3E-11 2.8E-15 103.7 4.1 65 109-176 13-80 (320)
178 2io1_B Small ubiquitin-related 99.0 6.6E-10 2.3E-14 80.7 6.4 65 109-176 16-80 (94)
179 3kyd_D Small ubiquitin-related 99.0 4.1E-09 1.4E-13 78.9 9.9 72 1-73 41-112 (115)
180 1wm3_A Ubiquitin-like protein 98.9 2.3E-09 7.8E-14 73.9 6.2 62 109-173 10-71 (72)
181 2io0_B Small ubiquitin-related 98.9 4.4E-09 1.5E-13 75.8 6.5 65 109-176 14-78 (91)
182 1wjn_A Tubulin-folding protein 98.8 8.5E-09 2.9E-13 75.1 6.5 61 115-176 25-93 (97)
183 2d07_B Ubiquitin-like protein 98.8 8.7E-09 3E-13 74.6 6.4 65 109-176 26-90 (93)
184 3a4r_A Nfatc2-interacting prot 98.8 1.1E-08 3.7E-13 71.8 6.2 62 109-173 16-78 (79)
185 1wz0_A Ubiquitin-like protein 98.7 1.1E-08 3.6E-13 75.6 5.0 65 109-176 33-97 (104)
186 3pge_A SUMO-modified prolifera 98.7 5.1E-08 1.7E-12 79.9 8.9 72 1-74 30-101 (200)
187 2eke_C Ubiquitin-like protein 98.7 2.1E-08 7.3E-13 74.1 5.9 65 109-176 39-103 (106)
188 3goe_A DNA repair protein RAD6 98.6 2.6E-07 9E-12 63.4 9.5 70 2-72 11-81 (82)
189 3tix_A Ubiquitin-like protein 98.6 6.3E-08 2.2E-12 78.1 6.8 72 1-74 58-129 (207)
190 2k8h_A Small ubiquitin protein 98.6 1.6E-08 5.5E-13 75.3 2.9 65 109-176 35-99 (110)
191 2pjh_A Protein NPL4, nuclear p 98.5 4.5E-08 1.5E-12 68.8 3.6 69 1-71 5-78 (80)
192 4efo_A Serine/threonine-protei 98.4 1.1E-06 3.7E-11 63.2 8.5 67 7-73 20-88 (94)
193 3v7o_A Minor nucleoprotein VP3 98.4 3.5E-08 1.2E-12 80.7 0.0 72 1-74 22-93 (227)
194 2jxx_A Nfatc2-interacting prot 98.4 1.9E-06 6.3E-11 62.6 8.8 70 1-71 26-96 (97)
195 3kyd_D Small ubiquitin-related 98.3 2.1E-06 7.2E-11 64.1 6.8 65 109-176 49-113 (115)
196 4efo_A Serine/threonine-protei 98.2 2.3E-06 7.7E-11 61.5 5.5 61 115-175 26-88 (94)
197 3pge_A SUMO-modified prolifera 98.1 3E-06 1E-10 69.3 6.3 65 109-176 37-101 (200)
198 3tix_A Ubiquitin-like protein 98.1 4.5E-06 1.5E-10 67.4 6.2 65 109-176 65-129 (207)
199 2l76_A Nfatc2-interacting prot 98.1 1.6E-05 5.4E-10 56.9 8.3 71 1-73 22-92 (95)
200 3ix6_A TS, tsase, thymidylate 98.1 5.3E-07 1.8E-11 80.0 0.5 71 1-73 22-92 (360)
201 3uf8_A Ubiquitin-like protein 98.0 2E-05 7E-10 65.1 8.1 71 2-74 23-93 (209)
202 2al3_A TUG long isoform; TUG U 98.0 2.8E-05 9.4E-10 55.2 7.5 72 1-73 10-81 (90)
203 3v7o_A Minor nucleoprotein VP3 98.0 1.1E-06 3.6E-11 71.9 0.0 75 93-176 19-93 (227)
204 2pjh_A Protein NPL4, nuclear p 97.9 6.8E-06 2.3E-10 57.5 3.7 58 115-173 16-78 (80)
205 3goe_A DNA repair protein RAD6 97.9 3E-05 1E-09 53.2 6.4 59 115-174 22-81 (82)
206 2kc2_A Talin-1, F1; FERM, adhe 97.8 3.4E-05 1.2E-09 58.5 5.9 71 2-73 13-122 (128)
207 3ivf_A Talin-1; FERM domain, c 97.5 0.00053 1.8E-08 61.2 10.9 144 2-176 5-168 (371)
208 4da1_A Protein phosphatase 1K, 97.5 1.2E-05 4.1E-10 72.5 0.0 71 2-74 32-102 (389)
209 2bps_A YUKD protein; ubiquitin 97.5 0.00028 9.6E-09 49.2 6.6 68 2-70 6-80 (81)
210 3qx1_A FAS-associated factor 1 97.2 0.0022 7.7E-08 44.8 8.9 69 2-72 9-82 (84)
211 2jxx_A Nfatc2-interacting prot 97.2 0.00061 2.1E-08 49.2 5.3 58 115-173 39-96 (97)
212 3uf8_A Ubiquitin-like protein 97.1 0.0012 4.2E-08 54.3 7.4 61 115-176 33-93 (209)
213 3ix6_A TS, tsase, thymidylate 96.9 0.00028 9.4E-09 62.6 1.8 74 94-176 20-93 (360)
214 2al3_A TUG long isoform; TUG U 96.9 0.0017 5.7E-08 46.0 5.4 61 115-176 22-82 (90)
215 2dzk_A UBX domain-containing p 96.7 0.01 3.5E-07 43.6 8.7 71 2-73 15-90 (109)
216 2l76_A Nfatc2-interacting prot 96.6 0.0037 1.2E-07 44.6 5.7 61 115-176 33-93 (95)
217 1wj4_A KIAA0794 protein; UBX d 96.5 0.0098 3.4E-07 44.8 7.7 70 2-73 45-119 (124)
218 2kc2_A Talin-1, F1; FERM, adhe 96.4 0.0018 6.2E-08 49.0 2.8 64 109-175 20-122 (128)
219 4da1_A Protein phosphatase 1K, 96.1 0.00089 3E-08 60.2 0.0 61 115-176 42-102 (389)
220 2bps_A YUKD protein; ubiquitin 96.1 0.0041 1.4E-07 43.2 3.2 61 109-172 15-80 (81)
221 2cr5_A Reproduction 8; UBX dom 95.5 0.048 1.7E-06 39.9 7.4 70 2-73 25-98 (109)
222 4e71_A Plexin-B2, MM1; transme 95.5 0.024 8.2E-07 41.6 5.3 60 115-175 26-110 (111)
223 1s3s_G P47 protein; AAA ATPase 95.0 0.065 2.2E-06 40.3 6.6 65 2-67 54-122 (127)
224 3h6n_A Plexin-D1; structural g 95.0 0.065 2.2E-06 40.1 6.4 61 115-176 19-105 (127)
225 2l32_A Small archaeal modifier 94.4 0.1 3.5E-06 35.3 5.9 60 1-71 1-60 (74)
226 4e74_A Plexin-A4; RBD, structu 94.3 0.06 2E-06 39.9 4.8 61 115-176 29-115 (117)
227 2r2o_A Plexin-B1; effector dom 94.2 0.062 2.1E-06 40.8 4.8 61 115-176 43-129 (138)
228 3vej_A Ubiquitin-like protein 94.2 0.061 2.1E-06 31.9 3.8 32 192-223 5-38 (41)
229 2daj_A KIAA0977 protein, COBL- 94.0 0.092 3.1E-06 36.4 5.0 62 2-64 12-76 (91)
230 2juo_A GA-binding protein alph 93.9 0.24 8.1E-06 34.2 6.8 59 14-73 6-64 (89)
231 4e71_A Plexin-B2, MM1; transme 93.9 0.4 1.4E-05 35.1 8.5 63 10-73 23-110 (111)
232 3qx1_A FAS-associated factor 1 93.7 0.13 4.5E-06 35.5 5.5 62 109-174 16-82 (84)
233 2lnz_A Ubiquitin-like protein 93.5 0.1 3.5E-06 33.6 4.1 35 190-224 26-62 (64)
234 4a3p_A Ubiquitin carboxyl-term 93.3 0.27 9.3E-06 40.3 7.7 60 13-73 142-208 (217)
235 3kuz_A Plexin-C1; structural g 93.3 0.17 5.8E-06 37.8 5.7 59 115-174 41-125 (126)
236 1oey_A P67-PHOX, neutrophil cy 93.1 0.2 6.9E-06 34.7 5.5 44 2-47 7-50 (83)
237 3jyu_A Ubiquitin carboxyl-term 92.8 0.54 1.8E-05 38.9 8.8 60 13-73 154-220 (231)
238 1ryj_A Unknown; beta/alpha pro 92.8 1.2 4E-05 29.5 8.9 61 1-72 5-65 (70)
239 2ylm_A Ubiquitin carboxyl-term 92.4 0.48 1.6E-05 44.2 8.9 134 12-156 353-501 (530)
240 2r2o_A Plexin-B1; effector dom 92.2 0.64 2.2E-05 35.2 7.7 62 11-73 41-128 (138)
241 2juo_A GA-binding protein alph 91.4 0.44 1.5E-05 32.9 5.5 59 117-176 7-65 (89)
242 3h6n_A Plexin-D1; structural g 91.3 1.8 6.1E-05 32.3 9.1 63 10-73 16-104 (127)
243 2dzk_A UBX domain-containing p 90.8 0.75 2.5E-05 33.4 6.7 65 109-176 22-91 (109)
244 3jyu_A Ubiquitin carboxyl-term 89.5 0.98 3.4E-05 37.3 7.2 61 115-176 154-221 (231)
245 1ip9_A BEM1 protein; ubiquitin 89.2 0.54 1.9E-05 32.5 4.4 43 1-46 13-56 (85)
246 3rpf_C Molybdopterin convertin 88.9 2 7E-05 28.5 7.3 66 1-72 1-69 (74)
247 1vjk_A Molybdopterin convertin 88.7 4.7 0.00016 28.2 9.5 65 1-71 10-92 (98)
248 4e74_A Plexin-A4; RBD, structu 88.6 1.8 6.1E-05 31.9 7.2 61 12-73 28-114 (117)
249 3ivf_A Talin-1; FERM domain, c 88.2 1.1 3.8E-05 39.4 7.1 60 115-175 15-84 (371)
250 4a3p_A Ubiquitin carboxyl-term 87.4 0.95 3.2E-05 37.0 5.7 61 115-176 142-209 (217)
251 2kvr_A Ubiquitin carboxyl-term 86.6 0.81 2.8E-05 34.4 4.4 33 13-45 58-90 (130)
252 3ig3_A Plxna3 protein; plexin 86.3 1.3 4.4E-05 41.6 6.5 61 115-176 249-335 (627)
253 1wj4_A KIAA0794 protein; UBX d 86.0 0.81 2.8E-05 34.1 4.1 63 109-175 52-119 (124)
254 1tyg_B YJBS; alpha beta barrel 85.6 1.6 5.4E-05 30.4 5.3 56 9-72 26-82 (87)
255 3hm6_X Plexin-B1; structural g 85.1 1.6 5.3E-05 41.2 6.4 61 115-176 276-362 (644)
256 1ef1_A Moesin; membrane, FERM 84.6 4.6 0.00016 34.0 8.9 72 1-74 2-79 (294)
257 2kl0_A Putative thiamin biosyn 84.6 1.6 5.5E-05 29.2 4.8 61 1-73 1-61 (73)
258 3dwg_C 9.5 kDa culture filtrat 84.3 4.5 0.00015 27.9 7.3 69 1-72 1-88 (93)
259 1f0z_A THis protein; ubiquitin 83.9 1.1 3.9E-05 29.1 3.7 61 1-72 1-61 (66)
260 1vd2_A Protein kinase C, IOTA 83.7 5.5 0.00019 27.8 7.3 45 2-47 8-53 (89)
261 2kvr_A Ubiquitin carboxyl-term 83.5 0.7 2.4E-05 34.8 2.8 32 116-147 59-90 (130)
262 1h4r_A Merlin; FERM, neurofibr 83.3 6.1 0.00021 33.6 9.2 71 1-73 23-98 (314)
263 2cr5_A Reproduction 8; UBX dom 82.3 2.3 7.9E-05 30.7 5.2 64 109-176 32-99 (109)
264 3kuz_A Plexin-C1; structural g 81.4 8.3 0.00028 28.6 7.9 60 11-71 39-124 (126)
265 2daj_A KIAA0977 protein, COBL- 80.4 2.3 7.8E-05 29.4 4.2 58 115-176 23-83 (91)
266 4eut_A Serine/threonine-protei 79.9 6.9 0.00023 34.1 8.5 63 10-72 321-385 (396)
267 2kmc_A Fermitin family homolog 79.9 14 0.00047 26.2 8.5 71 2-73 21-99 (102)
268 3po0_A Small archaeal modifier 77.3 14 0.00048 25.0 8.7 56 11-72 18-84 (89)
269 3ig3_A Plxna3 protein; plexin 77.3 14 0.00048 34.7 9.8 62 11-73 247-334 (627)
270 3qij_A Protein 4.1; cytoskelet 76.4 11 0.00038 31.8 8.5 72 1-73 18-95 (296)
271 2i1j_A Moesin; FERM, coiled-co 76.2 10 0.00036 35.4 8.9 72 1-74 5-82 (575)
272 1s3s_G P47 protein; AAA ATPase 75.2 3 0.0001 31.0 4.0 59 109-170 61-123 (127)
273 2k5p_A THis protein, thiamine- 74.3 2.9 9.9E-05 28.3 3.4 61 1-72 1-64 (78)
274 3hm6_X Plexin-B1; structural g 73.9 15 0.00053 34.5 9.1 61 12-73 275-361 (644)
275 2cu3_A Unknown function protei 71.8 8.5 0.00029 24.5 5.1 55 9-72 5-59 (64)
276 3qa8_A MGC80376 protein; kinas 71.7 8.3 0.00028 36.9 7.1 46 116-161 325-371 (676)
277 2kmm_A Guanosine-3',5'-BIS(dip 70.1 7.9 0.00027 25.1 4.8 63 1-73 1-63 (73)
278 1oey_A P67-PHOX, neutrophil cy 69.0 3.9 0.00013 28.1 3.0 36 115-150 16-51 (83)
279 1tyg_B YJBS; alpha beta barrel 68.8 16 0.00055 25.1 6.2 53 116-174 29-82 (87)
280 2l52_A Methanosarcina acetivor 68.1 27 0.00094 24.2 8.1 68 1-72 4-94 (99)
281 1ryj_A Unknown; beta/alpha pro 68.0 22 0.00075 23.0 7.4 49 116-174 17-65 (70)
282 4eut_A Serine/threonine-protei 66.6 9.4 0.00032 33.2 5.9 59 116-174 325-385 (396)
283 3onh_A Ubiquitin-activating en 66.5 18 0.00062 26.8 6.4 52 20-73 19-79 (127)
284 2qjl_A URM1, ubiquitin-related 66.0 30 0.001 24.0 8.3 70 1-72 2-94 (99)
285 3onh_A Ubiquitin-activating en 64.7 15 0.0005 27.3 5.6 53 122-175 19-79 (127)
286 1wgk_A Riken cDNA 2900073H19 p 64.0 23 0.00079 25.6 6.6 34 1-34 12-56 (114)
287 1wgy_A RAP guanine nucleotide 63.6 37 0.0013 24.2 7.7 65 9-74 18-87 (104)
288 2ylm_A Ubiquitin carboxyl-term 62.9 7.4 0.00025 36.1 4.6 158 13-176 38-218 (530)
289 1y8x_B Ubiquitin-activating en 62.7 9.9 0.00034 26.9 4.2 60 12-72 6-83 (98)
290 3qa8_A MGC80376 protein; kinas 62.2 6.8 0.00023 37.5 4.4 50 9-58 320-370 (676)
291 2cu3_A Unknown function protei 61.5 18 0.00062 22.9 5.1 52 116-174 8-59 (64)
292 1q1o_A Cell division control p 60.3 12 0.00041 26.5 4.3 28 10-37 22-49 (98)
293 1fm0_D Molybdopterin convertin 58.1 27 0.00091 22.9 5.7 54 12-72 18-76 (81)
294 2eel_A Cell death activator CI 57.4 26 0.00089 24.4 5.6 50 21-74 28-79 (91)
295 1wgr_A Growth factor receptor- 57.3 21 0.00072 25.3 5.2 37 3-39 12-48 (100)
296 1f2r_I Inhibitor of caspase-ac 55.9 20 0.00068 25.4 4.8 50 21-74 37-90 (100)
297 2q5w_D Molybdopterin convertin 55.3 20 0.00069 23.4 4.7 54 12-72 17-72 (77)
298 1vg5_A RSGI RUH-014, rhomboid 55.0 11 0.00037 25.2 3.1 28 191-218 26-53 (73)
299 1fm0_D Molybdopterin convertin 54.8 32 0.0011 22.6 5.7 53 115-174 19-76 (81)
300 3r8s_T 50S ribosomal protein L 53.7 37 0.0013 23.7 5.9 40 10-49 27-67 (93)
301 3rpf_C Molybdopterin convertin 53.6 40 0.0014 21.9 5.9 53 116-174 15-69 (74)
302 1f0z_A THis protein; ubiquitin 53.2 14 0.00048 23.6 3.5 53 116-174 9-61 (66)
303 3po0_A Small archaeal modifier 52.8 49 0.0017 22.1 6.7 54 115-174 20-84 (89)
304 3h9d_A ATG8, microtubule-assoc 49.8 33 0.0011 25.1 5.3 60 14-73 51-113 (119)
305 2ns5_A Partitioning-defective 48.8 62 0.0021 22.1 8.8 70 1-73 3-82 (85)
306 2zjd_A Microtubule-associated 48.0 29 0.001 25.8 4.9 60 14-73 56-119 (130)
307 2g1e_A Hypothetical protein TA 47.7 59 0.002 21.6 7.4 57 14-72 18-85 (90)
308 1vjk_A Molybdopterin convertin 47.2 66 0.0023 22.0 6.7 53 115-173 29-92 (98)
309 2q5w_D Molybdopterin convertin 46.1 36 0.0012 22.0 4.8 52 115-173 18-71 (77)
310 2c7h_A RBBP6, retinoblastoma-b 45.6 52 0.0018 22.6 5.5 41 3-43 9-51 (86)
311 3ge3_C Toluene-4-monooxygenase 44.6 72 0.0025 21.7 6.8 59 13-72 17-82 (84)
312 2k9x_A Tburm1, uncharacterized 44.0 7 0.00024 28.3 0.9 69 1-72 5-97 (110)
313 3au4_A Myosin-X; protein-prote 43.9 33 0.0011 31.6 5.7 46 1-46 217-264 (555)
314 1rws_A Hypothetical protein PF 43.1 14 0.00049 24.4 2.4 48 116-173 24-71 (77)
315 1z96_A DNA-damage, UBA-domain 43.1 12 0.0004 21.2 1.7 31 194-224 4-34 (40)
316 3m95_A Autophagy related prote 42.3 37 0.0013 25.0 4.7 60 14-73 56-118 (125)
317 3tve_T 50S ribosomal protein L 42.0 52 0.0018 22.8 5.2 40 10-49 21-61 (92)
318 2g1e_A Hypothetical protein TA 41.7 72 0.0024 21.2 5.9 57 116-174 18-85 (90)
319 1wgn_A UBAP1, ubiquitin associ 41.7 18 0.0006 23.3 2.4 30 191-220 16-45 (63)
320 3bpj_A Eukaryotic translation 39.9 73 0.0025 21.4 5.5 46 193-241 18-63 (80)
321 3rui_B Autophagy-related prote 39.7 50 0.0017 24.0 5.0 60 14-73 50-112 (118)
322 2g3q_A Protein YBL047C; endocy 38.7 25 0.00087 20.3 2.7 29 195-223 5-33 (43)
323 1vq8_S 50S ribosomal protein L 38.6 42 0.0014 22.9 4.2 33 10-42 22-54 (85)
324 2r2q_A Gamma-aminobutyric acid 38.6 42 0.0014 24.0 4.4 45 14-58 47-92 (110)
325 3pvl_A Myosin VIIA isoform 1; 38.6 42 0.0014 31.8 5.6 45 1-45 264-309 (655)
326 1pqs_A Cell division control p 37.6 30 0.001 23.2 3.2 26 12-37 3-28 (77)
327 1y8x_B Ubiquitin-activating en 36.5 91 0.0031 21.8 5.8 58 116-174 8-83 (98)
328 1ip9_A BEM1 protein; ubiquitin 36.1 13 0.00045 25.5 1.2 31 115-147 24-54 (85)
329 3ge3_C Toluene-4-monooxygenase 36.0 89 0.003 21.3 5.3 58 116-174 18-82 (84)
330 2inc_C TOUB protein; DIIRON, 4 35.9 1E+02 0.0035 20.9 7.0 60 115-175 15-82 (83)
331 1wgy_A RAP guanine nucleotide 35.3 84 0.0029 22.3 5.4 60 115-176 22-87 (104)
332 1eo6_A GATE-16, golgi-associat 35.1 49 0.0017 23.9 4.3 60 14-73 48-110 (117)
333 4gdk_A Ubiquitin-like protein 34.3 56 0.0019 22.5 4.3 57 14-73 23-85 (91)
334 2inc_C TOUB protein; DIIRON, 4 34.2 1.1E+02 0.0037 20.8 8.5 60 13-73 15-82 (83)
335 2v1y_A Phosphatidylinositol-4, 33.9 81 0.0028 22.6 5.2 67 3-71 22-102 (108)
336 2eel_A Cell death activator CI 33.6 96 0.0033 21.5 5.4 51 122-176 27-79 (91)
337 2lgx_A Fermitin family homolog 33.5 14 0.00046 26.7 1.0 61 11-72 36-101 (112)
338 1u84_A Hypothetical protein; s 32.9 1.1E+02 0.0037 21.1 5.5 52 192-243 28-80 (90)
339 3j21_T 50S ribosomal protein L 32.2 65 0.0022 22.0 4.3 33 10-42 23-55 (86)
340 2zjr_Q 50S ribosomal protein L 31.8 66 0.0022 22.4 4.3 36 13-48 25-61 (95)
341 2lo0_A Uncharacterized protein 31.7 1.1E+02 0.0039 20.3 5.3 36 190-225 38-74 (75)
342 1ixs_A Holliday junction DNA h 31.0 1E+02 0.0035 19.5 6.4 46 192-241 15-60 (62)
343 4dra_E Centromere protein X; D 30.5 84 0.0029 21.4 4.6 51 193-243 13-82 (84)
344 1vd2_A Protein kinase C, IOTA 30.4 73 0.0025 21.9 4.3 40 109-150 14-54 (89)
345 2hj1_A Hypothetical protein; s 30.4 1.2E+02 0.0041 21.1 5.6 55 12-72 27-84 (97)
346 2dhz_A RAP guanine nucleotide 29.2 96 0.0033 22.6 5.0 65 9-74 18-93 (120)
347 2juj_A E3 ubiquitin-protein li 28.9 78 0.0027 19.7 3.8 27 191-217 4-30 (56)
348 1ibx_B Chimera of IGG binding 27.7 29 0.00099 26.3 2.0 49 21-73 82-134 (145)
349 2jy5_A Ubiquilin-1; UBA, alter 27.6 59 0.002 19.8 3.1 31 192-222 10-41 (52)
350 3b0b_C CENP-X, centromere prot 27.5 1.4E+02 0.0049 20.0 5.3 50 194-243 10-78 (81)
351 3tca_A Amyloid beta A4 precurs 27.3 1.3E+02 0.0045 24.4 6.4 38 3-40 37-74 (291)
352 1ify_A HHR23A, UV excision rep 25.6 89 0.003 18.6 3.7 26 192-217 6-31 (49)
353 4gmv_A RAS-associated and plec 25.3 1.4E+02 0.0049 25.0 6.1 56 3-58 34-96 (281)
354 3u52_E Phenol hydroxylase comp 24.5 2E+02 0.007 20.8 7.4 58 13-71 40-107 (119)
355 2knz_A Ubiquilin-4; cytoplasm, 24.3 49 0.0017 20.2 2.3 28 192-219 9-37 (53)
356 3lxf_A Ferredoxin; iron, iron- 24.3 84 0.0029 21.8 3.9 32 2-37 2-33 (104)
357 1n62_A Carbon monoxide dehydro 24.0 66 0.0023 24.8 3.5 27 2-29 5-31 (166)
358 1t3q_A Quinoline 2-oxidoreduct 23.6 73 0.0025 24.4 3.8 28 1-29 10-37 (168)
359 2ooa_A E3 ubiquitin-protein li 23.2 85 0.0029 19.3 3.1 26 194-219 11-36 (52)
360 1wfy_A Regulator of G-protein 23.0 90 0.0031 22.2 3.7 62 8-73 25-88 (104)
361 3hrd_D Nicotinate dehydrogenas 22.9 77 0.0026 24.3 3.7 27 1-28 4-30 (160)
362 3eoq_A Putative zinc protease; 22.8 1.2E+02 0.0041 25.9 5.4 26 222-247 372-397 (406)
363 2i1j_A Moesin; FERM, coiled-co 22.7 4.2E+02 0.014 24.5 9.4 61 115-176 16-82 (575)
364 1f2r_I Inhibitor of caspase-ac 22.3 97 0.0033 21.8 3.8 51 122-176 36-90 (100)
365 2cu1_A Mitogen-activated prote 22.0 2E+02 0.0069 20.2 5.3 42 3-48 11-52 (103)
366 1ffv_A CUTS, iron-sulfur prote 21.4 80 0.0027 24.2 3.5 27 2-29 5-31 (163)
367 2oo9_A E3 ubiquitin-protein li 21.4 1.2E+02 0.004 18.2 3.4 26 193-218 3-28 (46)
368 3hvz_A Uncharacterized protein 21.3 1.3E+02 0.0043 20.0 4.1 62 2-73 7-68 (78)
369 1h4r_A Merlin; FERM, neurofibr 20.5 3.6E+02 0.012 22.2 9.0 61 115-176 34-99 (314)
370 4e9f_A Methyl-CPG-binding doma 20.4 1.2E+02 0.0039 23.2 4.3 47 192-238 30-78 (161)
371 1wji_A Tudor domain containing 20.4 35 0.0012 21.8 1.0 25 194-218 9-33 (63)
372 2zkr_s 60S ribosomal protein L 20.4 1.1E+02 0.0039 23.3 4.1 37 11-47 94-131 (156)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.8e-35 Score=236.30 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=141.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-E-cCeecCCCccccccCCCCCCCEEEEEEeccccc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL-A-TGRPLLDTKQILDYPQIKEGTKLNLVVKRALKE 78 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~-~-~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~ 78 (252)
|+|+||+++|+++.++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y-~i~~~~~l~l~~~~---- 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ-GLGPGSTVLLVVDK---- 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG-TCCTTCEEEEEECC----
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc-CCCCCCEEEEEccC----
Confidence 89999999999999999999999999999999999999999999 9 79999999999999 99999999999982
Q ss_pred ccccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCc
Q psy1973 79 SSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQI 158 (252)
Q Consensus 79 ~~~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL 158 (252)
+.+.|+++|+.. +|+. +.++|++++||.+||++|+.+.|+|+++|+|+|+|+.|.|+.+|
T Consensus 78 -------------~~~~m~i~vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL 137 (159)
T 3rt3_B 78 -------------SDEPLSILVRNN-----KGRS--STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 137 (159)
T ss_dssp -------------CCCCEEEEEECT-----TSCE--EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG
T ss_pred -------------CCCcEEEEEECC-----CCCE--EEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCH
Confidence 234577888876 6776 58999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEec
Q psy1973 159 LDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 159 ~~y~~i~~gs~l~l~~~~ 176 (252)
++| +|++|++|||++|.
T Consensus 138 ~~y-~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 138 GEY-GLKPLSTVFMNLRL 154 (159)
T ss_dssp GGG-TCCTTCEEEEEECC
T ss_pred HHc-CCCCCCEEEEEEec
Confidence 999 99999999999987
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=236.93 Aligned_cols=149 Identities=32% Similarity=0.533 Sum_probs=139.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEeccccccc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESS 80 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~~~ 80 (252)
|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.++++|+|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~~------- 92 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR------- 92 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGG-TCCTTCEEEEEEC-------
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHc-CCcccceeeeeec-------
Confidence 79999999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCccc
Q psy1973 81 QSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 160 (252)
Q Consensus 81 ~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~ 160 (252)
+.+.|.++|+.. .|++ +.+++.+++||.+||++|+.+.|+|+++|+|+|+|+.|.|+++|++
T Consensus 93 -----------~~gg~~i~Vk~~-----~g~~--~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~ 154 (172)
T 3u30_A 93 -----------LRGGMQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 154 (172)
T ss_dssp -----------CCCCEEEEEEES-----SCCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGG
T ss_pred -----------ccccccceeecc-----cCcc--eeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHH
Confidence 345666777765 6777 5899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEec
Q psy1973 161 YPQIKEGTKLNLVVKR 176 (252)
Q Consensus 161 y~~i~~gs~l~l~~~~ 176 (252)
| +|++|++|||++|.
T Consensus 155 y-~i~~g~tl~l~~rl 169 (172)
T 3u30_A 155 Y-NIQKESTLHLVLRL 169 (172)
T ss_dssp G-TCCTTCEEEECC--
T ss_pred h-CCCCCCEEEEEEec
Confidence 9 99999999999986
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=4.3e-33 Score=221.31 Aligned_cols=149 Identities=32% Similarity=0.519 Sum_probs=139.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEeccccccc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESS 80 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~~~ 80 (252)
|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~-~i~~~~~l~l~~~~------ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL------ 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHh-ccCCCCeeEEEeec------
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999873
Q ss_pred ccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCccc
Q psy1973 81 QSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 160 (252)
Q Consensus 81 ~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~ 160 (252)
.+.|.++|+.. .|+. +.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|.|+.+|++
T Consensus 74 ------------~~~~~i~Vk~~-----~g~~--~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~ 134 (152)
T 3b08_A 74 ------------RGGMQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134 (152)
T ss_dssp ------------TTCEEEEEEES-----SSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGG
T ss_pred ------------ccccceeeeec-----CCCE--EEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHH
Confidence 24466677765 5766 5899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEec
Q psy1973 161 YPQIKEGTKLNLVVKR 176 (252)
Q Consensus 161 y~~i~~gs~l~l~~~~ 176 (252)
| +|++|++||+++|.
T Consensus 135 ~-~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 135 Y-NIQKESTLHLVLRL 149 (152)
T ss_dssp G-TCCTTCEEEEEECC
T ss_pred c-CCCCCCEEEEEEec
Confidence 9 99999999999986
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=5.1e-19 Score=127.59 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+||.+.|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++| +|++|++|+|..
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY-~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY-EVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHc-CCCCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999 999999999863
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.78 E-value=9.5e-19 Score=123.60 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~l~l~~rl 77 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRL 77 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999999973
No 6
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1e-18 Score=125.16 Aligned_cols=72 Identities=32% Similarity=0.434 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCee-cCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRP-LLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~-L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|++++|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+. |+|+.+|++| +|++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y-~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC-QIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHH-TCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHc-CCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 9999999999 9999999999986
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=3.1e-18 Score=123.71 Aligned_cols=73 Identities=34% Similarity=0.556 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLAL 73 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECBC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999985
No 8
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-19 Score=136.32 Aligned_cols=104 Identities=28% Similarity=0.355 Sum_probs=86.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEeccccccc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESS 80 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~~~ 80 (252)
++|+|+.++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~~~------ 82 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY-NIQRESTLHLVLRL------ 82 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT-TCCSSCEEEEEECC------
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEc------
Confidence 48999999999999999999999999999999999999999999999999999999999 99999999999984
Q ss_pred ccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHH
Q psy1973 81 QSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILE 127 (252)
Q Consensus 81 ~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~ 127 (252)
++++.++++.. ...+|++ +++++.+++||..
T Consensus 83 ------------~GG~~~~~~~~--~~~~g~~--~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 83 ------------RGGSMGGAADE--EELIRKA--IELSLKESRNSGG 113 (114)
T ss_dssp ------------CSSCCCSSCSS--SHHHHHH--HHSSSHHHHHGGG
T ss_pred ------------CCCceeecccc--ccccCce--EEEEeccccccCC
Confidence 22223343310 0114666 3888888888753
No 9
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=3.9e-18 Score=123.50 Aligned_cols=72 Identities=31% Similarity=0.541 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +| +|++|||+++.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~-~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TC-TTEEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHc-CC-CCcEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999 99 89999999985
No 10
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.5e-18 Score=124.96 Aligned_cols=73 Identities=21% Similarity=0.405 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEEcCeecCCCccccccCCC-CCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVN--SEMSILELKNKI-NEALKIPVSDQKLLATGRPLLDTKQILDYPQI-KEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~--~~~TV~~lK~~I-~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i-~~~s~i~l~~~~ 74 (252)
|+|+||+++|++++++|+ +++||.+||++| +++.|+|+++|+|+|+|+.|+|+.+|++| +| ++|++|+|.+++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHH-CCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHc-CCCCCCCEEEEEcCC
Confidence 899999999999888755 999999999999 99999999999999999999999999999 99 699999999985
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=5.8e-18 Score=122.92 Aligned_cols=72 Identities=35% Similarity=0.575 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| ||++|++|+|+++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGG-TCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHC-CCCCCCEEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999 9999999999987
No 12
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.74 E-value=7.6e-18 Score=123.99 Aligned_cols=73 Identities=36% Similarity=0.572 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999983
No 13
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=2.9e-18 Score=125.93 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+||++.|+++.++|++++||.+||++|+++.|+|+++|+|+|.|++|+|+.+|++| +|.++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dy-gI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY-EIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHH-TCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999 999999999864
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1e-17 Score=117.96 Aligned_cols=73 Identities=25% Similarity=0.504 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEI-FLD-VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~-~~~-v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+ .++ |++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~-~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY-EVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT-TCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeC
Confidence 8999999999985 899 9999999999999999999999999999999999999999999 99999999999874
No 15
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=1.3e-17 Score=116.30 Aligned_cols=73 Identities=34% Similarity=0.556 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|++.++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999873
No 16
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.1e-18 Score=127.30 Aligned_cols=73 Identities=25% Similarity=0.466 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| ||++|++|+|++++
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC-GLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHc-CCCCCCEEEEEEcC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999985
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=9.4e-18 Score=120.94 Aligned_cols=71 Identities=31% Similarity=0.552 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+||+.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHc-CC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999999999999999999999999999 99 8999999875
No 18
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=3.2e-17 Score=120.02 Aligned_cols=73 Identities=32% Similarity=0.519 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~---~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+.+.++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++| ||.+|++|+|++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGG-TCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 89999999999999999999999999 99999999999975
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=2.8e-17 Score=114.67 Aligned_cols=73 Identities=36% Similarity=0.569 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+++++.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGG-TCCTTCEEEEEECC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999884
No 20
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.73 E-value=1.1e-17 Score=122.88 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEEcCeecCCCccccccCCC-CCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFL--DVNSEMSILELKNKI-NEALKIPVSDQKLLATGRPLLDTKQILDYPQI-KEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~--~v~~~~TV~~lK~~I-~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i-~~~s~i~l~~~~ 74 (252)
|+|+||+++|+.|++ +|++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++| +| ++|++|+|++++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGS-CCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHc-CcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 88889999999999999999999999999 99 999999999985
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2.9e-17 Score=120.22 Aligned_cols=73 Identities=36% Similarity=0.572 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.++++|+|+++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999985
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=118.36 Aligned_cols=73 Identities=36% Similarity=0.569 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIHNHSALYLLLKL 76 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTT-TCCTTCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999984
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-17 Score=121.83 Aligned_cols=73 Identities=37% Similarity=0.580 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||..+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 95 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGG-TCCTTEEEEEECBC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999884
No 24
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.72 E-value=1.2e-17 Score=120.18 Aligned_cols=73 Identities=34% Similarity=0.570 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLRL 85 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGG-TCCTTCEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999999873
No 25
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.72 E-value=3.1e-17 Score=117.28 Aligned_cols=73 Identities=32% Similarity=0.465 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~---~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|+++ +|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+.++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGG-CCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHc-CCCCCCEEEEEEcC
Confidence 789999999999999999999999999999998 89999999999999999999999999 99999999999984
No 26
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.8e-17 Score=118.65 Aligned_cols=73 Identities=29% Similarity=0.537 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++++|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGG-TCCTTCEEEEEC--
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999884
No 27
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=1.6e-17 Score=117.29 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++| +|.+|++|+++++.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~-~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH-TCCTTEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHc-CCCCCCEEEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999873
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=120.06 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHH-HCSTTCEEEEEEC-
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEc
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999985
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.2e-17 Score=116.97 Aligned_cols=73 Identities=34% Similarity=0.531 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+.+.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKWSTLFLLLRL 76 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEC
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999999984
No 30
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=115.98 Aligned_cols=73 Identities=44% Similarity=0.661 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| ||++|++|++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGG-TCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999873
No 31
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.71 E-value=5.5e-17 Score=113.66 Aligned_cols=71 Identities=31% Similarity=0.554 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|++ +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| ||++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999999999999999999999999999 9999999999876
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4e-17 Score=117.27 Aligned_cols=73 Identities=27% Similarity=0.336 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.++++|+|+++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~-~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSKKK 80 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHH-TCCTTEEEEEEECS
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHC-CCCCCCEEEEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999999984
No 33
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.70 E-value=4.9e-17 Score=122.65 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCC-------CCCEEEEEE
Q psy1973 1 MKISVKVLQGQE-IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIK-------EGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~-------~~s~i~l~~ 72 (252)
|+++|+...|++ +.++|.+++||.+||++|+.+.|+|+++|+|+|+|+.|+|+++|++| ||. ++++|||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy-~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHH-TCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc-CcccccccCCCCCEEEEEe
Confidence 889999988874 89999999999999999999999999999999999999999999999 999 799999999
Q ss_pred ec
Q psy1973 73 KR 74 (252)
Q Consensus 73 ~~ 74 (252)
+.
T Consensus 80 r~ 81 (118)
T 2fnj_B 80 RA 81 (118)
T ss_dssp BS
T ss_pred cC
Confidence 83
No 34
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.70 E-value=7.2e-17 Score=121.32 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=70.2
Q ss_pred CEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCC-------CCEEEEEE
Q psy1973 1 MKISVKVLQGQ-EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKE-------GTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~-~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~-------~s~i~l~~ 72 (252)
|.+|++...++ ++.+++.+++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++| ||.+ +++|||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy-~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT-TCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHc-CCCcCcccCCCCCEEEEEE
Confidence 88999999888 588999999999999999999999999999999999999999999999 9999 99999999
Q ss_pred ec
Q psy1973 73 KR 74 (252)
Q Consensus 73 ~~ 74 (252)
+.
T Consensus 80 r~ 81 (118)
T 4ajy_B 80 RA 81 (118)
T ss_dssp CC
T ss_pred ec
Confidence 85
No 35
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=7.1e-17 Score=116.47 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=70.3
Q ss_pred CEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQG-QEIFL-DVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g-~~~~~-~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+| +++.+ +|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.++++|+|+++.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLVRP 82 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHH-TCCTTCEEEEEECC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeC
Confidence 7999999999 69999 59999999999999999999999999999999999999999999 99999999999985
No 36
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.70 E-value=2.2e-18 Score=124.27 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=67.0
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|+|||+.. +|+. +.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++| +|++|++|+|.
T Consensus 20 ~mIqI~Vk~~-----~Gkk--~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY-~I~dgstLhL~ 91 (93)
T 3plu_A 20 HMIEVVVNDR-----LGKK--VRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY-EVHDQTNLELY 91 (93)
T ss_dssp CEEEEEEECT-----TSCE--EEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEE
T ss_pred ceEEEEEECC-----CCCE--EEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHc-CCCCCCEEEEE
Confidence 3567788876 6776 49999999999999999999999999999999999999999999999 99999999986
Q ss_pred E
Q psy1973 174 V 174 (252)
Q Consensus 174 ~ 174 (252)
.
T Consensus 92 ~ 92 (93)
T 3plu_A 92 Y 92 (93)
T ss_dssp E
T ss_pred e
Confidence 3
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=4e-17 Score=119.96 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++++|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|.|+.||++| +|.++++|+|+++.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy-~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQ 94 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH-TCCTTCEEEEEESS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHC-CCCCCCEEEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999874
No 38
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.2e-17 Score=117.90 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCC-ccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+| ++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++| +|++|++|+|+++.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~y-gI~~gstl~lv~r~ 88 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY-GITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHH-TCCTTEEEEEEECC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHC-CCCCCCEEEEEEeC
Confidence 7899999888 899999999999999999999999999999999999999999 999999 99999999999985
No 39
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=1.1e-16 Score=120.59 Aligned_cols=73 Identities=36% Similarity=0.572 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 108 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT-TCCTTCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999999984
No 40
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.5e-17 Score=120.75 Aligned_cols=73 Identities=19% Similarity=0.413 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+.+.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+|+.+|++| ||.+|++|||+++.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL-KIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHC-CCSSSCEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999985
No 41
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.69 E-value=5.4e-17 Score=131.00 Aligned_cols=73 Identities=37% Similarity=0.580 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|++|++|||+++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHc-CCCCCCEEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999985
No 42
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.68 E-value=4.2e-18 Score=122.79 Aligned_cols=73 Identities=26% Similarity=0.501 Sum_probs=66.1
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|.++|+.. .|+. +.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|.|+.+|++| +| +|++|||+
T Consensus 16 ~~m~i~Vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i-~g~~i~lv 86 (88)
T 4eew_A 16 DSLEVLVKTL-----DSQT--RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NV-GGKVIHLV 86 (88)
T ss_dssp CEEEEEEEET-----TSCE--EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TC-TTEEEEEE
T ss_pred CeEEEEEEcC-----CCCE--EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHc-CC-CCcEEEEE
Confidence 3467778766 5676 58899999999999999999999999999999999999999999999 99 89999999
Q ss_pred Ee
Q psy1973 174 VK 175 (252)
Q Consensus 174 ~~ 175 (252)
+|
T Consensus 87 ~R 88 (88)
T 4eew_A 87 ER 88 (88)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 43
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-17 Score=124.34 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=66.1
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+.+ .|+. +.++|.+++||.+||++|+...|+|+++|||+|+|+.|.|+.+|++| ||++|++|+|+++
T Consensus 2 m~I~Vk~~-----~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~i~~g~~i~lv~~ 73 (106)
T 3m62_B 2 VSLTFKNF-----KKEK--VPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC-GLKDGDQVVFMVS 73 (106)
T ss_dssp -CEEEECT-----TCCE--EEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECC
T ss_pred EEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHc-CCCCCCEEEEEEc
Confidence 34556654 5676 59999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cC
Q psy1973 176 RA 177 (252)
Q Consensus 176 ~~ 177 (252)
++
T Consensus 74 ~~ 75 (106)
T 3m62_B 74 QK 75 (106)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 44
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.50 E-value=3.2e-18 Score=119.86 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+++++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQSIVHIVQRP 73 (76)
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999873
No 45
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=116.25 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++ |+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.++++|+|+++.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-~I~~gstI~lv~rl 90 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEVAGRM 90 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHH-TCCSSCEEEEECCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEec
Confidence 7999998 89999999999999999999999999999999999999999999999999 99999999999873
No 46
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=117.30 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+++|+.. .|++ +.++|++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++||+++|
T Consensus 5 m~i~Vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~l~l~~r 76 (79)
T 3phx_B 5 LSILVRNN-----KGRS--STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLR 76 (79)
T ss_dssp EEEEEECT-----TSCE--EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEEC
T ss_pred EEEEEEeC-----CCCE--EEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEe
Confidence 45566655 6776 58999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 77 l 77 (79)
T 3phx_B 77 L 77 (79)
T ss_dssp C
T ss_pred c
Confidence 6
No 47
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-17 Score=120.15 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=63.1
Q ss_pred HHHHHHhhccccccccceeeee--cCCcccHHHHHHHh-hcccCCCCCCeEEEEcCeecCCCCCcccccCC-CCCCEEEE
Q psy1973 97 YKFLRKYFTETQSNKIADEFIK--VNSEMSILELKNKI-NEALKIPVSDQKLLATGRPLLDTKQILDYPQI-KEGTKLNL 172 (252)
Q Consensus 97 ~i~vk~~~~~~~~g~~~~~~i~--v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i-~~gs~l~l 172 (252)
+|+||++ .|+.+ +++ +.+++||.+||++| +...|+|+++|||+|+|+.|.|+.+|++| +| ++|++|+|
T Consensus 3 qI~VKtl-----~g~~~--~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~~~stl~v 74 (87)
T 2lxa_A 3 HLTLKKI-----QAPKF--SIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITV 74 (87)
T ss_dssp EEEEEEC-----SSSCE--ECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHH-CCCGGGCEEEE
T ss_pred EEEEEcC-----CCCEE--EEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHc-CCCCCCCEEEE
Confidence 3455555 56653 555 55999999999999 99999999999999999999999999999 99 69999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
++++
T Consensus 75 ~~~~ 78 (87)
T 2lxa_A 75 MIKP 78 (87)
T ss_dssp EECC
T ss_pred EcCC
Confidence 9987
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=115.04 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| ||.+|++|+|+.++
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH-GIHDGLTVHLVIKT 97 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGG-TCCTTCEEEEEECC
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcC
Confidence 78999998 88999999999999999999999999999999999999999999999999 99999999999884
No 49
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.8e-16 Score=115.97 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEecc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 75 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~~ 75 (252)
|+|+|+..+|+ +.++|++++||.+||++|++++|+++++|+|+|+|+.|+|+.+|.+| +|+++++|+|+++..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHH-TCCTTEEEEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcCC
Confidence 78999998886 79999999999999999999999999999999999999999999999 999999999999863
No 50
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=3.7e-17 Score=133.73 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~Lvlrl 178 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 178 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGG-TCCTTCEEEECCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHC-CCCCCCEEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999984
No 51
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=9.2e-17 Score=119.22 Aligned_cols=73 Identities=23% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEEcCeecC-CCccccccCCCCC
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV---------------SDQKLLATGRPLL-DTKQILDYPQIKE 64 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~---------------~~q~L~~~G~~L~-d~~tL~~~~~i~~ 64 (252)
|+|+|+.++|++++++|.+++||.+||++|+++.++|+ .+|+|+|+|+.|. |+.+|++| ||++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy-gI~~ 86 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY-GIRN 86 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH-TCCS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc-CCCC
Confidence 89999999999999999999999999999999999987 3579999999995 67999999 9999
Q ss_pred CCEEEEEEec
Q psy1973 65 GTKLNLVVKR 74 (252)
Q Consensus 65 ~s~i~l~~~~ 74 (252)
|++|||+.+.
T Consensus 87 g~~l~lv~~l 96 (105)
T 1v2y_A 87 RDEVSFIKKL 96 (105)
T ss_dssp SEEEEEEECS
T ss_pred CCEEEEEehh
Confidence 9999999985
No 52
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.4e-16 Score=115.60 Aligned_cols=72 Identities=25% Similarity=0.429 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~r~ 94 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHH-TCCTTCEEEEEECC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEcC
Confidence 78999999886 79999999999999999999999999999999999999999999999 99999999999985
No 53
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=3.7e-17 Score=120.17 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=67.5
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHh-hcccCCCCCCeEEEEcCeecCCCCCcccccCC-CCCCEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKI-NEALKIPVSDQKLLATGRPLLDTKQILDYPQI-KEGTKLN 171 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i-~~gs~l~ 171 (252)
..|.|+||++ .|+.+.+.++|.+++||.+||++| +...|+|+++|||+|+|+.|.|+.+|++| +| ++|++|+
T Consensus 18 ~~m~I~VKtl-----~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~g~ti~ 91 (98)
T 4a20_A 18 AAVHLTLKKI-----QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTIT 91 (98)
T ss_dssp CCEEEEEEEC-----SSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGS-CCBTTBCEEE
T ss_pred CCEEEEEEcC-----CCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHc-CcCCCCCEEE
Confidence 3466777766 566533455778999999999999 88899999999999999999999999999 99 9999999
Q ss_pred EEEec
Q psy1973 172 LVVKR 176 (252)
Q Consensus 172 l~~~~ 176 (252)
|++++
T Consensus 92 lmvsk 96 (98)
T 4a20_A 92 VMIKP 96 (98)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99987
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.65 E-value=8.1e-16 Score=115.70 Aligned_cols=73 Identities=36% Similarity=0.572 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 108 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTT-TCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999884
No 55
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.65 E-value=2.4e-17 Score=119.31 Aligned_cols=73 Identities=25% Similarity=0.474 Sum_probs=66.1
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+.. .|+. +.++|.+++||.+||++|+.+.|+|+++|||+|+|+.|.|+.+|++| +| +|++|||+++
T Consensus 6 m~i~Vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~-~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 6 LEVLVKTL-----DSQT--RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NV-GGKVIHLVER 76 (90)
T ss_dssp EEEEEEET-----TCCE--EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TC-TTEEEEEEEC
T ss_pred EEEEEEcC-----CCCE--EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHc-CC-CCcEEEEEec
Confidence 55566655 5676 58999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred cC
Q psy1973 176 RA 177 (252)
Q Consensus 176 ~~ 177 (252)
.+
T Consensus 77 ~~ 78 (90)
T 4dwf_A 77 AP 78 (90)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 56
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.65 E-value=3.7e-17 Score=118.01 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=62.2
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|+++.
T Consensus 9 ~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 9 TGKE--IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLAL 73 (88)
T ss_dssp TCCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECBC
T ss_pred CCCE--EEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEEC
Confidence 5676 58999999999999999999999999999999999999999999999 99999999999997
No 57
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=1.8e-17 Score=118.64 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=67.1
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCee-cCCCCCcccccCCCCCCEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRP-LLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~-L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
-|.|+++.+ .|+. +.++|++++||.+||++|+...|+|+++|+|+|+|+. |+|+++|++| +|++|++|+|+
T Consensus 10 ~~~i~vk~l-----~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y-~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENL-----NGSS--FELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC-QIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEET-----TSCE--EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHH-TCCTTSCEEEE
T ss_pred ceEEEEEec-----CCcE--EEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHc-CCCCCCEEEEE
Confidence 355677766 6776 5899999999999999999999999999999999999 9999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
+++
T Consensus 82 ~~p 84 (84)
T 2kk8_A 82 VSS 84 (84)
T ss_dssp ECC
T ss_pred EcC
Confidence 864
No 58
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=3.3e-16 Score=114.91 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=64.5
Q ss_pred EEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQ----GQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~----g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.|.|+..+ |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++| +|++|++|+++.-
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y-~I~~gsti~vl~l 91 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ-GVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHH-TCCSSEEEEEECC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHc-CCCCCCEEEEEEE
Confidence 36667766 67899999999999999999999999999999999999999999999999 9999999955543
No 59
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.8e-16 Score=115.73 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=68.5
Q ss_pred CEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCC-ccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQG----QEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g----~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+| +.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++| +|++|++|+|+.+.
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~y-gI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY-GLKDGDMVVLLQKD 85 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHH-TCCTTEEEEECBCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHC-CCCCCCEEEEEECC
Confidence 7899999765 6899999999999999999999999999999999999999887 799999 99999999999874
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.64 E-value=5.8e-16 Score=123.52 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|++|++|||+++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y-~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRL 154 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999999984
No 61
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.5e-17 Score=114.56 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=65.4
Q ss_pred HHHHHHHhhccccccccceeeee-cCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIK-VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
|+++|+.. .|+.+ +.++ +++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++||+++
T Consensus 3 m~i~Vk~~-----~g~~~-~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~-~i~~g~~i~l~~ 75 (78)
T 2faz_A 3 MWIQVRTM-----DGRQT-HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY-EVRLNDTIQLLV 75 (78)
T ss_dssp EEEEEEET-----TSSCE-EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT-TCCTTCEEEEEE
T ss_pred EEEEEEEC-----CCCEE-EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEE
Confidence 44455554 56652 3788 9999999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
|+
T Consensus 76 r~ 77 (78)
T 2faz_A 76 RQ 77 (78)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 62
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=7e-16 Score=116.47 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=67.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEEcCeecCCCccccccCCCCCC--CEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE------ALKI--PVSDQKLLATGRPLLDTKQILDYPQIKEG--TKLNL 70 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~------~~gi--~~~~q~L~~~G~~L~d~~tL~~~~~i~~~--s~i~l 70 (252)
|+|+||+++|++++++|++++||.+||++|++ +.|+ |+++|+|+|.|+.|+|+.+|++| +|..+ ++|||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y-~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTT-TCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHc-CCCCCCceEEEE
Confidence 78999999999999999999999999999999 5675 69999999999999999999999 99766 67899
Q ss_pred EEec
Q psy1973 71 VVKR 74 (252)
Q Consensus 71 ~~~~ 74 (252)
+++.
T Consensus 96 vlr~ 99 (116)
T 1wgh_A 96 VARE 99 (116)
T ss_dssp EECS
T ss_pred EccC
Confidence 8885
No 63
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.64 E-value=3.2e-17 Score=119.00 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 93 RDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 93 ~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
...|+|+|+.. .|+. +.+++.+++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| ||++|++|+|
T Consensus 15 ~~~m~i~Vk~~-----~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l 86 (91)
T 3v6c_B 15 RGSMQIFVNTL-----TGTH--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHL 86 (91)
T ss_dssp CCSEEEEEECT-----TSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGG-TCCTTCEEEE
T ss_pred CCeEEEEEEeC-----CCCE--EEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHC-CCCCCCEEEE
Confidence 45688888876 6776 58999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
++|.
T Consensus 87 ~~rl 90 (91)
T 3v6c_B 87 VLRL 90 (91)
T ss_dssp ECCC
T ss_pred EEec
Confidence 9885
No 64
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=9.8e-16 Score=113.29 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=68.0
Q ss_pred CEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCC-CCCCEEEEEEe
Q psy1973 1 MKISVKVLQG--QEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI-KEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g--~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i-~~~s~i~l~~~ 73 (252)
|+|+|+...+ ..++++|++++||.+||++|++++|+|+++|||+|+|+.++|+.||.+| || ++|+++||++.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~y-gI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSH-GVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGG-TCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHc-CCCCCCCEEEEEEE
Confidence 6899999875 6799999999999999999999999999999999999999999999999 99 59999999986
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.2e-16 Score=115.62 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|+++++|||+++.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVVRS 89 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHH-TCCTTEEEECCBCC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHC-CCCCCCEEEEEEeC
Confidence 78999998 99999999999999999999999999999999999999999999999999 99999999999884
No 66
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1e-15 Score=117.52 Aligned_cols=72 Identities=25% Similarity=0.408 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++. |+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|.+| +|++|++|+|+++.
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~lv~~~ 104 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGT-TCSSSEEEEEEEC-
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEecc
Confidence 78999998 99999999999999999999999999999999999999999999999999 99999999999985
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=5.9e-16 Score=112.11 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---EcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFL-DVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~-~v~~~~TV~~lK~~I~~~~gi~~~~q~L~---~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+. +|+.+.+ +|++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++| +|++|++|+|+..+
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~-~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL-KLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH-TCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc-CCCCCCEEEEEecC
Confidence 7899997 8899999 99999999999999999999999999999 999999999999999 99999999998874
No 68
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=3e-17 Score=120.50 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=66.3
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
-|.|+|++. .|+. +.++|.+++||.+||++|+++.|+|+++|||+|+|++|.|+.+|++| +|++|++|+|+.
T Consensus 28 mm~I~VKtl-----~Gk~--i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dy-gI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDR-----LGKK--VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY-EIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECS-----SSSC--EEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHH-TCCTTEEEEEEC
T ss_pred eEEEEEECC-----CCCE--EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEe
Confidence 377888876 5776 58999999999999999999999999999999999999999999999 999999999974
No 69
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.7e-16 Score=116.37 Aligned_cols=71 Identities=31% Similarity=0.554 Sum_probs=67.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|++ +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| ||++|++|+|+.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTT-TCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHC-CCCCCCEEEEEeC
Confidence 4678887 899999999999999999999999999999999999999999999999999 9999999999876
No 70
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=8.3e-16 Score=115.63 Aligned_cols=73 Identities=29% Similarity=0.392 Sum_probs=70.1
Q ss_pred CEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVL---QGQEIFLDVNS-EMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~---~g~~~~~~v~~-~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++. +|+.+.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTT-TCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999999999999999999999999999 99999999999984
No 71
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=2.2e-15 Score=107.90 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=66.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++++.++|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS-DVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTT-TCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHC-CCCCCCEEEEEEe
Confidence 456777999999999999999999999999999999999999999999999999999 9999999999876
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=7.8e-16 Score=112.82 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=67.3
Q ss_pred CEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEI-FLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~-~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||. .|+.+ .++|++++||.+||++|++++|+|+++|+|+|+|+.|.|+ +|++| +|++|++|+|+..+
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~-~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI-KMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSC-CCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHC-CCCCCCEEEEEecc
Confidence 6899996 78999 6999999999999999999999999999999999999999 99999 99999999998875
No 73
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3e-16 Score=114.77 Aligned_cols=65 Identities=28% Similarity=0.430 Sum_probs=61.3
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcc---cCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.++|++++||.+||++|+.. .|+|+++|+|+|+|+.|.|+.+|++| ||++|++|++++++
T Consensus 9 ~g~~--~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~~i~l~~~~ 76 (95)
T 1uel_A 9 QQQT--FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVMVTK 76 (95)
T ss_dssp TCCE--EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGG-TCCSSSEEEEEESS
T ss_pred CCCE--EEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEeC
Confidence 4665 589999999999999999999 78999999999999999999999999 99999999999987
No 74
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.9e-15 Score=115.27 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCCC--CCeEEEEcCeecCCCccccccCCCCCC------C
Q psy1973 1 MKISVKVLQGQEI-FLDVNSEMSILELKNKIN-----EALKIPV--SDQKLLATGRPLLDTKQILDYPQIKEG------T 66 (252)
Q Consensus 1 M~i~Vk~~~g~~~-~~~v~~~~TV~~lK~~I~-----~~~gi~~--~~q~L~~~G~~L~d~~tL~~~~~i~~~------s 66 (252)
|+|+||+++|+.+ .+++++++||.+||++|+ .+.|+|+ ++|+|+|+|+.|+|+.||++| +|+.+ +
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy-~I~~~~~~~~v~ 95 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDY-RSPVSNLAGAVT 95 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGG-SCCTTSCTTCCE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHc-CCCcCCccCCcE
Confidence 6899999999988 799999999999999994 5668887 799999999999999999999 99998 6
Q ss_pred EEEEEEec
Q psy1973 67 KLNLVVKR 74 (252)
Q Consensus 67 ~i~l~~~~ 74 (252)
++||+++.
T Consensus 96 tmhlVlrl 103 (126)
T 1se9_A 96 TMHVIIQA 103 (126)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 89999985
No 75
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=116.67 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEEcCeecCCCccccccCCCCCCC--EEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE------ALKIP--VSDQKLLATGRPLLDTKQILDYPQIKEGT--KLNL 70 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~------~~gi~--~~~q~L~~~G~~L~d~~tL~~~~~i~~~s--~i~l 70 (252)
|+|+||+++|++++++|++++||.+||++|++ +.|+| +++|+|+|+|+.|+|+.+|++| +|+.++ +|||
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y-~I~~~~~~tlhl 96 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLPFGKTTVMHL 96 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGG-CCCTTSEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHc-CCCCCCceEEEE
Confidence 68999999999999999999999999999999 77884 8999999999999999999999 999776 7888
Q ss_pred EEec
Q psy1973 71 VVKR 74 (252)
Q Consensus 71 ~~~~ 74 (252)
+++.
T Consensus 97 v~r~ 100 (125)
T 2gow_A 97 VARE 100 (125)
T ss_dssp EECS
T ss_pred EecC
Confidence 8885
No 76
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=2.3e-15 Score=109.98 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=67.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCC-ccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+.+.++|++++||.+||++|+.+. +++|+|+|+|+.|+|+ .+|++| +|++|++|||++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y-~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL-NITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTT-TCCTTEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHc-CCCCCCEEEEEECC
Confidence 7899999999999999999999999999999988 8999999999999999 999999 99999999999985
No 77
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=7e-16 Score=113.16 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=56.0
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
+.++|++++||.+||++|++++|+|+++|+|+|+|+.|.|++||++| +|++|++|+++.
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y-~I~~gsti~vl~ 90 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ-GVAHNVKAMVLE 90 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHH-TCCSSEEEEEEC
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHc-CCCCCCEEEEEE
Confidence 69999999999999999999999999999999999999999999999 999999994443
No 78
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=5.6e-17 Score=125.13 Aligned_cols=73 Identities=37% Similarity=0.580 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~I~~gsti~l~~rl 73 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhh-ccCCCCEEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999985
No 79
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.4e-16 Score=117.24 Aligned_cols=77 Identities=27% Similarity=0.435 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEE
Q psy1973 92 LRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLN 171 (252)
Q Consensus 92 l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~ 171 (252)
....|.|+|+.. .|+. +.++|.+++||.+||++|+.+.|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+
T Consensus 19 ~~~~m~I~Vk~~-----~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~ 90 (98)
T 4hcn_B 19 QGRPMQIFVKTL-----TGKT--ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLH 90 (98)
T ss_dssp ---CCEEEEEET-----TCCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGG-TCCTTEEEE
T ss_pred CCCeEEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHC-CCCCCCEEE
Confidence 345688888876 5676 58999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEec
Q psy1973 172 LVVKR 176 (252)
Q Consensus 172 l~~~~ 176 (252)
|++|.
T Consensus 91 l~~rl 95 (98)
T 4hcn_B 91 LVLRL 95 (98)
T ss_dssp EECBC
T ss_pred EEEec
Confidence 99986
No 80
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.60 E-value=6.7e-17 Score=121.91 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=59.0
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCC-------CCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIK-------EGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~-------~gs~l~l~~~~ 176 (252)
+.++|.+++||.+||++|+.++|||+++|||+|+|+.|+|+++|++| ||+ ++++|||++|.
T Consensus 14 i~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy-~I~~~~a~~q~~stL~L~lr~ 81 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHH-TCCTTTSBTTBCEEEEEEEBS
T ss_pred EEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc-CcccccccCCCCCEEEEEecC
Confidence 58999999999999999999999999999999999999999999999 999 79999999993
No 81
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.60 E-value=2.6e-16 Score=115.07 Aligned_cols=73 Identities=27% Similarity=0.463 Sum_probs=65.8
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|.|+|+.. .|+. +.++|++++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| +|++|++|+|+++
T Consensus 2 m~i~vk~~-----~g~~--~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEET-----TCCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEEC
T ss_pred cEEEEEeC-----CCCE--EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEE
Confidence 34455544 5666 58999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 74 ~ 74 (96)
T 3k9o_B 74 L 74 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 82
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.4e-15 Score=109.42 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=68.0
Q ss_pred CEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEEcCeecCCCccccccC-CCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQ--EIFLDVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQILDYP-QIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~--~~~~~v~~~~TV~~lK~~I~~~~--gi~~~~q~L~~~G~~L~d~~tL~~~~-~i~~~s~i~l~~~~ 74 (252)
|+|+||+.+|+ .+.+++++++||.+||++|++++ |+|+++|+|+|+|+.|+|+.+|++|- +|+++++|||+++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCC
Confidence 79999999998 57777889999999999999998 99999999999999999999999993 46899999999874
No 83
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.59 E-value=1.1e-15 Score=114.93 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=59.6
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCC-------CCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKE-------GTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~-------gs~l~l~~~~ 176 (252)
+.+++.+++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++| ||++ +++|||++|.
T Consensus 14 I~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy-~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 14 IFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT-TCCGGGSBTTBCEEEEEEECC
T ss_pred EEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHc-CCCcCcccCCCCCEEEEEEec
Confidence 68899999999999999999999999999999999999999999999 9999 9999999997
No 84
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.7e-16 Score=113.43 Aligned_cols=75 Identities=27% Similarity=0.456 Sum_probs=66.4
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
.+|+|+++.+ .|+. +.+++++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++| +|++|++|+|+
T Consensus 8 ~~~~i~v~~~-----~G~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~ 79 (88)
T 1sif_A 8 QGLQLFIKTL-----TGKT--FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLV 79 (88)
T ss_dssp --CEEEEEET-----TSCE--EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGG-TCCTTCEEEEE
T ss_pred cceEEEEEeC-----CCCE--EEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHc-CCCCCCEEEEE
Confidence 3567777776 6776 58999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 80 ~r~ 82 (88)
T 1sif_A 80 LRL 82 (88)
T ss_dssp C--
T ss_pred EeC
Confidence 986
No 85
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.1e-15 Score=111.78 Aligned_cols=73 Identities=26% Similarity=0.379 Sum_probs=68.1
Q ss_pred CEEEEEeCCC---cEEEEEecC---------CCCHHHHHHHHHHHh--CCCCCC-eEEEEcCeecCCCccccccCCCCCC
Q psy1973 1 MKISVKVLQG---QEIFLDVNS---------EMSILELKNKINEAL--KIPVSD-QKLLATGRPLLDTKQILDYPQIKEG 65 (252)
Q Consensus 1 M~i~Vk~~~g---~~~~~~v~~---------~~TV~~lK~~I~~~~--gi~~~~-q~L~~~G~~L~d~~tL~~~~~i~~~ 65 (252)
|+|+||+.+| +.+.++|++ ++||.+||++|+.++ |+|+++ |+|+|+|+.|+|+.+|++| +|++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y-~i~~g 91 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY-GIQPG 91 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH-TCCTT
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc-CCCCC
Confidence 7899999999 789999554 599999999999999 999999 9999999999999999999 99999
Q ss_pred CEEEEEEec
Q psy1973 66 TKLNLVVKR 74 (252)
Q Consensus 66 s~i~l~~~~ 74 (252)
++|||+.+.
T Consensus 92 ~~i~lv~~~ 100 (107)
T 1x1m_A 92 STVHVLRKS 100 (107)
T ss_dssp CEEEEEESS
T ss_pred CEEEEEeCC
Confidence 999999984
No 86
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.38 E-value=9e-17 Score=112.40 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=68.0
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+.. .|+. +.+++++++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++||++++
T Consensus 1 M~i~Vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFN-----SSYG--FPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQSIVHIVQR 72 (76)
Confidence 67888876 5666 48999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 73 l 73 (76)
T 3b1l_X 73 P 73 (76)
Confidence 6
No 87
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.59 E-value=4.1e-16 Score=108.68 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=61.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++| +|++|++|+++++.
T Consensus 9 ~g~~--~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 9 TGKE--IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLAL 73 (76)
T ss_dssp TSCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECC
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 5665 48999999999999999999999999999999999999999999999 99999999999986
No 88
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.4e-16 Score=111.10 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=65.6
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+++|+.. .|+. +.+++++++||.+||++|++..++|+++|+|+|+|+.|.|+.+|++| +|++|++|++++|
T Consensus 4 m~i~vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTL-----MGRT--IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECG-----GGCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTT-TCCTTCEEEEEEC
T ss_pred EEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEe
Confidence 34455544 4665 58999999999999999999999999999999999999999999999 9999999999999
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 76 l 76 (85)
T 3n3k_B 76 L 76 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 89
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.58 E-value=3.6e-16 Score=111.65 Aligned_cols=73 Identities=27% Similarity=0.375 Sum_probs=64.7
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcc---cCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
|.++|+.. .|+. +.+++++++||.+||++|+.. .|+|+++|+|+|+|+.|.|+.+|++| +|++|++|++
T Consensus 6 m~i~vk~~-----~g~~--~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l 77 (85)
T 2wyq_A 6 VTITLKTL-----QQQT--FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVV 77 (85)
T ss_dssp EEEEEEET-----TSCE--EEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGG-CCCTTSEEEE
T ss_pred EEEEEEEC-----CCCE--EEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHc-CCCCCCEEEE
Confidence 44555554 4665 589999999999999999997 89999999999999999999999999 9999999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
+.++
T Consensus 78 ~~~~ 81 (85)
T 2wyq_A 78 MVTK 81 (85)
T ss_dssp EEC-
T ss_pred EEcC
Confidence 9987
No 90
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.58 E-value=2.3e-16 Score=113.35 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=67.7
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|.|+|+.. .|+. +.++|++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|++++
T Consensus 12 ~m~i~vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~ 83 (88)
T 3dbh_I 12 SMLIKVKTL-----TGKE--IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVL 83 (88)
T ss_dssp CEEEEEECT-----TSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGG-TCCTTCEEEECC
T ss_pred cEEEEEEcC-----CCCE--EEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEE
Confidence 466677765 5666 58999999999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
+.
T Consensus 84 rl 85 (88)
T 3dbh_I 84 RL 85 (88)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 91
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=5e-15 Score=107.53 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEEcCeecCC-CccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSE-----MSILELKNKINEALKIPVSDQKLLATGRPLLD-TKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~-----~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d-~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++ .|+.+.++|+++ .||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++| +|++|++|+|+.++
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~-~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSAL-GIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHH-TCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHC-CCCCCCEEEEEecC
Confidence 6899998 688899999995 99999999999999999999999999999988 6689999 99999999998874
No 92
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.5e-16 Score=125.95 Aligned_cols=73 Identities=37% Similarity=0.580 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstL~Lvlrl 73 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHc-CCCCCCEEEEEeec
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999985
No 93
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=119.93 Aligned_cols=72 Identities=36% Similarity=0.590 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|+..+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|.+| +|++|++|||+++
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y-~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGG-TCCTTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHh-CCCCCCEEEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999 9999999999987
No 94
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.57 E-value=2.2e-16 Score=111.33 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=61.7
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|.|+.||++| +|++|++|+++++.
T Consensus 12 ~g~~--~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~-~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 12 DSSE--IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQ 76 (79)
T ss_dssp TCCE--EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH-TCCTTEEEEEEECC
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHc-CCCCCCEEEEEEec
Confidence 5666 58999999999999999999999999999999999999999999999 99999999999986
No 95
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.7e-16 Score=114.59 Aligned_cols=94 Identities=29% Similarity=0.424 Sum_probs=63.3
Q ss_pred CccccccCCCCCCCEEEEEEecccccccccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHh
Q psy1973 53 TKQILDYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKI 132 (252)
Q Consensus 53 ~~tL~~~~~i~~~s~i~l~~~~~~~~~~~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i 132 (252)
...+++| .|. +|.++.+. +.|.+.|.... .|+. +.++|++++||.+||++|
T Consensus 7 ~~~~~~~-~~~--~t~~l~l~--------------------~~m~i~I~Vk~----~g~~--~~l~v~~~~TV~~LK~~I 57 (101)
T 3m63_B 7 HHPMSDY-DIP--TTENLYFQ--------------------GAMSLNIHIKS----GQDK--WEVNVAPESTVLQFKEAI 57 (101)
T ss_dssp ---------------------------------------------CCEEEEC----SSCC--CCBCCCTTSBHHHHHHHH
T ss_pred cCCcccc-CCC--cceeeccc--------------------CCcEEEEEEEE----CCEE--EEEEeCCCCCHHHHHHHH
Confidence 3567788 664 56665554 34444433221 4666 589999999999999999
Q ss_pred hcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 133 NEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 133 ~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
++..|+|+++|+|+|+|+.|.|+.+|++| ||++|++|+|+.+.
T Consensus 58 ~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 58 NKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKSQ 100 (101)
T ss_dssp HHHHSCCSTTCCEEETTEECCTTSBTTTT-TCCTTEEEEECCCC
T ss_pred HHHHCcChHHEEEEECCEECCCcCcHHHC-CCCCCCEEEEEeCC
Confidence 99999999999999999999999999999 99999999999764
No 96
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1.5e-15 Score=114.58 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=65.7
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhc------ccCC--CCCCeEEEEcCeecCCCCCcccccCCC
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINE------ALKI--PVSDQKLLATGRPLLDTKQILDYPQIK 165 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~------~~gi--p~~~q~L~~~G~~L~d~~tL~~y~~i~ 165 (252)
+.|.|+|+++ .|++ ++++|++++||.+||++|+. ++++ |+++|||+|.|+.|+|+++|++| +|+
T Consensus 15 ~~m~I~vKtl-----~G~t--~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y-~I~ 86 (116)
T 1wgh_A 15 DMINLRLILV-----SGKT--KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLP 86 (116)
T ss_dssp SSEEEEEECS-----SSCE--EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTT-TCC
T ss_pred CeEEEEEEeC-----CCCE--EEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHc-CCC
Confidence 3467777776 6776 59999999999999999998 5575 69999999999999999999999 998
Q ss_pred CC--CEEEEEEecC
Q psy1973 166 EG--TKLNLVVKRA 177 (252)
Q Consensus 166 ~g--s~l~l~~~~~ 177 (252)
.+ ++|||++|..
T Consensus 87 ~~~~~tlhLvlr~~ 100 (116)
T 1wgh_A 87 FGKTTVMHLVARET 100 (116)
T ss_dssp SSCEEEEEEEECSS
T ss_pred CCCceEEEEEccCC
Confidence 66 6799999873
No 97
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.56 E-value=9.7e-16 Score=106.74 Aligned_cols=65 Identities=29% Similarity=0.482 Sum_probs=61.4
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++| +|++|++|+++++.
T Consensus 9 ~g~~--~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 9 TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQRESTLHLVLRL 73 (76)
T ss_dssp TSCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGG-TCCTTCEEEEEECC
T ss_pred CCCE--EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 4665 58999999999999999999999999999999999999999999999 99999999999986
No 98
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=109.09 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=66.4
Q ss_pred EEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 2 KISVK-VLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 2 ~i~Vk-~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.|+|+ ..+|+.+.++++++.||.+||+.++...++|+++|+|+|+|+.|.|+.||.+| ||++|.+|||+++.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~-gIk~g~TIhLvi~s 89 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQH-GVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHH-SCCSSCEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHc-CCCCCCEEEEEEec
Confidence 45555 44678899999999999999999999999999999999999999999999999 99999999999984
No 99
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-16 Score=113.48 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=64.7
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+.. .|+. +.++|++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|+++
T Consensus 5 m~I~Vk~~-----~g~~--~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 5 LSILVRNN-----KGRS--STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEET-----TSCE--EEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHH-HCSTTCEEEEEEC
T ss_pred EEEEEECC-----CCCE--EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEE
Confidence 34455544 4665 58999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 77 ~ 77 (88)
T 2hj8_A 77 L 77 (88)
T ss_dssp -
T ss_pred c
Confidence 7
No 100
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.56 E-value=4.2e-16 Score=114.49 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=68.8
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|.|+|+.. .|+. +.++|.+++||.+||++|+.+.|+|+++|||+|+|+.|.|++||++| +|++|++|+|+
T Consensus 20 ~~m~I~Vk~~-----~g~~--~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy-~i~~g~~I~l~ 91 (97)
T 1wyw_B 20 EYIKLKVIGQ-----DSSE--IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVY 91 (97)
T ss_dssp CEEEEEEECT-----TCCE--EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH-TCCTTCEEEEE
T ss_pred CcEEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHC-CCCCCCEEEEE
Confidence 3477778766 6776 58999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 92 ~~~ 94 (97)
T 1wyw_B 92 QEQ 94 (97)
T ss_dssp ESS
T ss_pred Eec
Confidence 986
No 101
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=8.6e-16 Score=109.49 Aligned_cols=65 Identities=28% Similarity=0.440 Sum_probs=61.7
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|++..++|++.|+|+|+|+.|.|+.+|++| +|++|++|+++++.
T Consensus 12 ~g~~--~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 12 TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKWSTLFLLLRL 76 (85)
T ss_dssp TSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEECCC
T ss_pred CCCE--EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEC
Confidence 4665 58999999999999999999999999999999999999999999999 99999999999987
No 102
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.8e-14 Score=113.53 Aligned_cols=73 Identities=36% Similarity=0.572 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|+|+++.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 149 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999984
No 103
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.2e-14 Score=109.86 Aligned_cols=73 Identities=27% Similarity=0.415 Sum_probs=67.7
Q ss_pred CEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEE
Q psy1973 1 MKISVKVL----------QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 1 M~i~Vk~~----------~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
++|.|+.. +|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++| +|.+|++|||
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~i~~g~~i~l 104 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMASGAVIHL 104 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHH-TCCSSCEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHC-CCCCCCEEEE
Confidence 35777775 478899999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEec
Q psy1973 71 VVKR 74 (252)
Q Consensus 71 ~~~~ 74 (252)
+++.
T Consensus 105 v~rl 108 (115)
T 1we7_A 105 ALKE 108 (115)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9984
No 104
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2.5e-15 Score=109.85 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+ +.+|++| +|+++++|+|+.++
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~-~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREI-KVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHH-CCCTTEEEEECCSS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHC-CCCCCCEEEEEecc
Confidence 6789985 7889999999999999999999999999999999999999994 5599999 99999999998764
No 105
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=109.26 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=66.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE--cCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|.++++.++|+++.++|++++||.+||++|++++||||++|+|+| .|+ |+|+.+|++| +|++|++|||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~-~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL-HLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH-CCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc-CCCCCCEEEEEecC
Confidence 667787889999999999999999999999999999999999986 555 9999999999 99999999998874
No 106
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.55 E-value=1.8e-15 Score=111.23 Aligned_cols=65 Identities=29% Similarity=0.487 Sum_probs=61.7
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++|+++.+.
T Consensus 9 ~g~~--~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 9 TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (98)
T ss_dssp TSCE--EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred CCCE--EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeC
Confidence 4665 58999999999999999999999999999999999999999999999 99999999999987
No 107
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.1e-16 Score=108.98 Aligned_cols=73 Identities=33% Similarity=0.477 Sum_probs=65.1
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|.++|+.. .|+. +.+++.+++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++|+++++
T Consensus 8 m~i~vk~~-----~g~~--~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 8 MQLTVKAL-----QGRE--CSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNSKLNLVVK 79 (81)
T ss_dssp EEEEEEET-----TSCE--EEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGG-TCCSSBCCEEECC
T ss_pred EEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEe
Confidence 44455543 4665 58999999999999999999999999999999999999999999999 9999999999987
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
+
T Consensus 80 ~ 80 (81)
T 2dzi_A 80 P 80 (81)
T ss_dssp C
T ss_pred C
Confidence 6
No 108
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.55 E-value=7.1e-16 Score=112.59 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=65.9
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCC-CCcccccCCCCCCEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~~i~~gs~l~l~ 173 (252)
.|+|+|+.. .| + +.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+ .+|++| +|++|++|+|+
T Consensus 15 ~~~I~Vk~~-----~~-~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~y-gI~~gstl~lv 85 (94)
T 2kan_A 15 KIHVTVKFP-----SK-Q--FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY-GITEFSEIVVF 85 (94)
T ss_dssp CEEEEEECS-----SC-E--EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHH-TCCTTEEEEEE
T ss_pred CEEEEEEcC-----Cc-E--EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHC-CCCCCCEEEEE
Confidence 355666654 34 3 58999999999999999999999999999999999999999 999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 86 ~r~ 88 (94)
T 2kan_A 86 LKS 88 (94)
T ss_dssp ECC
T ss_pred EeC
Confidence 997
No 109
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=8.4e-16 Score=110.28 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=66.7
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|+|+|+.. .|+. +.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++| +|++|++|++++
T Consensus 7 ~m~i~Vk~~-----~g~~--~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~-~i~~g~~i~l~~ 78 (87)
T 1wh3_A 7 GIQVFVKNP-----DGGS--YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSK 78 (87)
T ss_dssp SEEEEEEET-----TTEE--EEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHH-TCCTTEEEEEEE
T ss_pred CEEEEEEcC-----CCCE--EEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHC-CCCCCCEEEEEE
Confidence 355566654 4665 58999999999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
+.
T Consensus 79 ~~ 80 (87)
T 1wh3_A 79 KK 80 (87)
T ss_dssp CS
T ss_pred ec
Confidence 87
No 110
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.6e-15 Score=109.38 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=65.8
Q ss_pred HHHHHHHhhcccccc-ccceeee-ecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 96 SYKFLRKYFTETQSN-KIADEFI-KVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 96 m~i~vk~~~~~~~~g-~~~~~~i-~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
|+|+|+.. .| ++ +.+ ++++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|||+
T Consensus 8 m~i~Vk~~-----~g~~~--~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~ 79 (89)
T 1wy8_A 8 MWIQVRTI-----DGSKT--CTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLL 79 (89)
T ss_dssp EEEEEEET-----TCSCE--EEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHH-TCCTTCEEEEE
T ss_pred EEEEEEEC-----CCCce--EEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHC-CCCCCCEEEEE
Confidence 55566655 46 45 589 59999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 80 ~~~ 82 (89)
T 1wy8_A 80 VRP 82 (89)
T ss_dssp ECC
T ss_pred EeC
Confidence 987
No 111
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=106.34 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=63.7
Q ss_pred CEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEEc--CeecCCCccccccCCCCCCCEEEE
Q psy1973 1 MKISVKVLQGQEI--FL-DVNSEMSILELKNKINEA-LKIPVSDQKLLAT--GRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 1 M~i~Vk~~~g~~~--~~-~v~~~~TV~~lK~~I~~~-~gi~~~~q~L~~~--G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
|+|+|+++.|+.+ .+ +|++++||.+||++|++. .|+||++|+|+|. |+.|+|+.+|++| +|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y-~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKL-PVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTS-SCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHc-CCCCCCEEEE
Confidence 7999999998774 58 999999999999999995 8999999999976 9999999999999 9999999876
No 112
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.54 E-value=2.6e-15 Score=112.93 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=68.9
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|+|+|+.. .|+. +.++|.+++||.+||++|+.+.|+|+++|||+|+|+.|.|+.+|++| +|++|++|||+
T Consensus 34 ~~m~I~Vk~~-----~G~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECS-----SSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT-TCCTTCEEEEE
T ss_pred ccEEEEEEeC-----CCCE--EEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEE
Confidence 3577778766 5676 58999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
+|.
T Consensus 106 ~rl 108 (111)
T 3vdz_A 106 LRL 108 (111)
T ss_dssp ECC
T ss_pred Eec
Confidence 986
No 113
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.2e-15 Score=113.93 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=68.9
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|+|+|+.. .|+. +.++|.+++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| ||++|++|||+
T Consensus 22 ~~m~I~Vk~~-----~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~ti~lv 93 (106)
T 1ttn_A 22 YECQLRLRLS-----TGKD--LKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL-KIPKDYVVQVI 93 (106)
T ss_dssp CSEEEEEEET-----TTEE--EEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHC-CCSSSCEEEEE
T ss_pred CeEEEEEEcC-----CCCE--EEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEE
Confidence 3577788866 5666 58999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 94 ~~~ 96 (106)
T 1ttn_A 94 VSQ 96 (106)
T ss_dssp CCC
T ss_pred EeC
Confidence 987
No 114
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.53 E-value=8.7e-15 Score=107.66 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEEcCeecCCCccccccC-CCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQ--EIFLDVNSEMSILELKNKINEA-LKIP-VSDQKLLATGRPLLDTKQILDYP-QIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~--~~~~~v~~~~TV~~lK~~I~~~-~gi~-~~~q~L~~~G~~L~d~~tL~~~~-~i~~~s~i~l~ 71 (252)
|+|+||+.+|+ .++++|++++||.+||++|+++ .|+| +++|+|+|+|+.|+|+.+|++|- +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 6789999999999999999996 5666 59999999999999999999993 58899999974
No 115
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.6e-15 Score=111.98 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=66.7
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|.|+|+.. .|+ +.++|.+++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|||++
T Consensus 17 ~m~I~Vk~~-----~g~---~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gi~~g~~i~l~~ 87 (106)
T 1wx7_A 17 LIKVTVKTP-----KDK---EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVI 87 (106)
T ss_dssp EEEEEEECS-----SCE---EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHH-TCCTTEEEEEEE
T ss_pred eEEEEEEeC-----CCc---EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEE
Confidence 466677654 344 48899999999999999999999999999999999999999999999 999999999999
Q ss_pred ecCc
Q psy1973 175 KRAL 178 (252)
Q Consensus 175 ~~~~ 178 (252)
++..
T Consensus 88 ~~~~ 91 (106)
T 1wx7_A 88 KRQH 91 (106)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9743
No 116
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.52 E-value=2.2e-14 Score=100.19 Aligned_cols=64 Identities=31% Similarity=0.538 Sum_probs=60.1
Q ss_pred cccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 110 NKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 110 g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
|+. +.+++++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| ||++|++|+++.+.
T Consensus 13 g~~--~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 13 QDK--WEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKSQ 76 (77)
T ss_dssp TEE--EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred CEE--EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEEcC
Confidence 454 58899999999999999999999999999999999999999999999 99999999998864
No 117
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=1.8e-15 Score=111.71 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=66.5
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|.|+|+.. .|+ +.++|.+++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|+
T Consensus 21 ~~m~I~Vk~~-----~g~---~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~ 91 (100)
T 1yqb_A 21 HLIKVTVKTP-----KDK---EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLV 91 (100)
T ss_dssp TEEEEEEECS-----SCE---EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHH-TCCTTCEEEEE
T ss_pred CeEEEEEEcC-----CCc---EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEE
Confidence 4466677655 444 38899999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 92 ~r~ 94 (100)
T 1yqb_A 92 IKR 94 (100)
T ss_dssp ECC
T ss_pred EcC
Confidence 997
No 118
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.51 E-value=4.4e-15 Score=119.78 Aligned_cols=66 Identities=30% Similarity=0.485 Sum_probs=62.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEecC
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 177 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~ 177 (252)
.|+. +.++|++++||.+||++|+.+.|+|+++|||+|+|+.|+|+.+|++| +|++|++|||++|..
T Consensus 9 ~Gk~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 9 TGKT--ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLR 74 (169)
T ss_dssp TSCE--EEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHc-CCCCCCEEEEEEEec
Confidence 5776 58999999999999999999999999999999999999999999999 999999999999963
No 119
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.51 E-value=1.1e-15 Score=117.84 Aligned_cols=73 Identities=29% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+.. +|++ +.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++
T Consensus 1 M~I~Vk~~-----~G~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTL-----TGKT--ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 72 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeC-----CCCE--EEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhh-ccCCCCEEEEEEE
Confidence 67888877 5776 48999999999999999999999999999999999999999999999 9999999999999
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 73 l 73 (128)
T 3u5e_m 73 L 73 (128)
T ss_dssp -
T ss_pred c
Confidence 7
No 120
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.3e-15 Score=112.84 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=67.4
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.++|+++.+ .|++ +.+++++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|++
T Consensus 9 ~~~i~vk~l-----~G~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~ 80 (114)
T 2kdi_A 9 EFQIFAKTL-----TGKT--ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY-NIQRESTLHLVL 80 (114)
T ss_dssp CCEEEEEET-----TCCE--EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT-TCCSSCEEEEEE
T ss_pred cEEEEEEeC-----CCcE--EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEE
Confidence 345566666 6776 58999999999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
+.
T Consensus 81 ~~ 82 (114)
T 2kdi_A 81 RL 82 (114)
T ss_dssp CC
T ss_pred Ec
Confidence 97
No 121
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.51 E-value=7.4e-14 Score=101.95 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=62.3
Q ss_pred CEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc--Ce---ec-CCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQ--EIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT--GR---PL-LDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~--~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~--G~---~L-~d~~tL~~~~~i~~~s~i~l~ 71 (252)
++|+|+...+. .++++|++++||.+||++|+.++|+|+++|+|+|. |+ .| +|+.+|++| +|.+|++|+|+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y-~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYY-ANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHH-CCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHC-CcCCCCEEEEE
Confidence 36788876664 78899999999999999999999999999999998 55 44 899999999 99999999986
No 122
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=9.4e-16 Score=113.76 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=65.5
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCC---------------CCeEEEEcCeecC-CCCCcc
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPV---------------SDQKLLATGRPLL-DTKQIL 159 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~---------------~~q~L~~~G~~L~-d~~tL~ 159 (252)
|.|+|+++ +|+. +.++|.+++||.+||++|+++.++|+ ++|+|+|+|+.|. |+++|+
T Consensus 8 M~I~Vk~l-----~g~~--~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~ 80 (105)
T 1v2y_A 8 MTVRVCKM-----DGEV--MPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLR 80 (105)
T ss_dssp EEEEEECS-----SSCE--EEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHH
T ss_pred EEEEEEec-----CCCE--EEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHH
Confidence 66677766 6776 59999999999999999999999987 4679999999997 568999
Q ss_pred cccCCCCCCEEEEEEecC
Q psy1973 160 DYPQIKEGTKLNLVVKRA 177 (252)
Q Consensus 160 ~y~~i~~gs~l~l~~~~~ 177 (252)
+| ||++|++||++.+..
T Consensus 81 dy-gI~~g~~l~lv~~lr 97 (105)
T 1v2y_A 81 DY-GIRNRDEVSFIKKLG 97 (105)
T ss_dssp HH-TCCSSEEEEEEECSC
T ss_pred Hc-CCCCCCEEEEEehhc
Confidence 99 999999999999973
No 123
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.50 E-value=3e-14 Score=105.34 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=58.6
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCC-CCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI-KEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i-~~gs~l~l~~~~ 176 (252)
++++|++++||.+||++|++++|+|+++|||+|+|+.+.|++||.+| || ++|+++||++--
T Consensus 39 i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~y-gI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 39 IWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSH-GVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGG-TCCSTTCEEEEEECC
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHc-CCCCCCCEEEEEEEe
Confidence 69999999999999999999999999999999999999999999999 99 599999999865
No 124
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.50 E-value=5.3e-15 Score=112.76 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=64.3
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHh-----hcccCCCC--CCeEEEEcCeecCCCCCcccccCCCCC
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKI-----NEALKIPV--SDQKLLATGRPLLDTKQILDYPQIKEG 167 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i-----~~~~gip~--~~q~L~~~G~~L~d~~tL~~y~~i~~g 167 (252)
.|.|+++++ +|+.+ ..+++++++||.+||++| ++++|+|+ ++|||||+|+.|+|++||++| +|+.|
T Consensus 16 ~~~i~~kt~-----~G~~i-~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy-~I~~~ 88 (126)
T 1se9_A 16 QLEIKFRLT-----DGSDI-GPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDY-RSPVS 88 (126)
T ss_dssp CEEEEEEET-----TSCEE-EEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGG-SCCTT
T ss_pred cEEEEEEEC-----CCCEE-EeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHc-CCCcC
Confidence 344556665 67652 269999999999999999 66778986 899999999999999999999 99999
Q ss_pred ------CEEEEEEecC
Q psy1973 168 ------TKLNLVVKRA 177 (252)
Q Consensus 168 ------s~l~l~~~~~ 177 (252)
+++||+++..
T Consensus 89 ~~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 89 NLAGAVTTMHVIIQAP 104 (126)
T ss_dssp SCTTCCEEEEEEECCC
T ss_pred CccCCcEEEEEEeccC
Confidence 7899999973
No 125
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=3.2e-14 Score=101.80 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=60.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|+.++
T Consensus 20 ~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 20 GGKS--IPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS-DVGSGAKLMLMASQ 84 (85)
T ss_dssp TTEE--EEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTT-TCCTTEEEEEECCC
T ss_pred CCEE--EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHC-CCCCCCEEEEEEeC
Confidence 4565 58999999999999999999999999999999999999999999999 99999999998754
No 126
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.49 E-value=2.1e-15 Score=119.38 Aligned_cols=73 Identities=29% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|+|+.. +|++ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++
T Consensus 1 MqI~VK~l-----~G~~--~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTL-----TGKT--ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeC-----CCCE--EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHc-CCCCCCEEEEEee
Confidence 67888877 5776 58999999999999999999999999999999999999999999999 9999999999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 73 l 73 (152)
T 3u5c_f 73 L 73 (152)
T ss_dssp -
T ss_pred c
Confidence 6
No 127
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=1.2e-14 Score=106.15 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=62.6
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCC-CCcccccCCCCCCEEEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~~i~~gs~l~l~~ 174 (252)
|.|+|+.. .|+. +.++|.+++||.+||++|+... +++|||+|+|+.|.|+ .+|++| +|++|++|||++
T Consensus 8 m~i~Vk~~-----~g~~--~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y-~i~~g~~i~l~~ 76 (95)
T 1wia_A 8 INVRLKFL-----NDTE--ELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL-NITNNCVIHCHR 76 (95)
T ss_dssp EEEEEEET-----TTEE--EEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTT-TCCTTEEEEEEC
T ss_pred EEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHc-CCCCCCEEEEEE
Confidence 45556544 4565 5899999999999999999997 8999999999999999 999999 999999999999
Q ss_pred ecC
Q psy1973 175 KRA 177 (252)
Q Consensus 175 ~~~ 177 (252)
+++
T Consensus 77 ~~~ 79 (95)
T 1wia_A 77 SPP 79 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
No 128
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=111.43 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=63.7
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhc------ccCCC--CCCeEEEEcCeecCCCCCcccccCCCCC
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINE------ALKIP--VSDQKLLATGRPLLDTKQILDYPQIKEG 167 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~------~~gip--~~~q~L~~~G~~L~d~~tL~~y~~i~~g 167 (252)
|.|+++++ +|++ ++++|++++||.+||++|+. ++|+| +++|||+|+|+.|+|+++|++| +|+.|
T Consensus 18 m~I~vktl-----~G~~--~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y-~I~~~ 89 (125)
T 2gow_A 18 INLRLILV-----SGKT--KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLPFG 89 (125)
T ss_dssp EEEEEECT-----TSCE--EEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGG-CCCTT
T ss_pred EEEEEEeC-----CCCE--EEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHc-CCCCC
Confidence 44455555 5766 59999999999999999998 67884 8999999999999999999999 99977
Q ss_pred C--EEEEEEecC
Q psy1973 168 T--KLNLVVKRA 177 (252)
Q Consensus 168 s--~l~l~~~~~ 177 (252)
+ +|||++|..
T Consensus 90 ~~~tlhlv~r~~ 101 (125)
T 2gow_A 90 KTTVMHLVARET 101 (125)
T ss_dssp SEEEEEEEECSC
T ss_pred CceEEEEEecCC
Confidence 6 789999873
No 129
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.48 E-value=7.8e-14 Score=121.82 Aligned_cols=72 Identities=36% Similarity=0.590 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+||+++|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdy-gI~~gstL~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 305 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEEC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHc-CCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999 9999999999987
No 130
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=103.50 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=65.5
Q ss_pred hhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 93 RDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 93 ~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
...|+|+|+. |+. +.++|++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|
T Consensus 17 ~~~m~I~Vk~-------g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-~I~~gstI~l 86 (93)
T 2l7r_A 17 RGSMQLFVRA-------QEL--HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEV 86 (93)
T ss_dssp ---CEEEEES-------SSE--EEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHH-TCCSSCEEEE
T ss_pred CCcEEEEEEC-------CCE--EEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEE
Confidence 3456777763 555 58999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
++|.
T Consensus 87 v~rl 90 (93)
T 2l7r_A 87 AGRM 90 (93)
T ss_dssp ECCC
T ss_pred EEec
Confidence 9986
No 131
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.48 E-value=5.3e-14 Score=100.85 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=62.1
Q ss_pred EEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-------cCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 2 KISVKV--LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA-------TGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 2 ~i~Vk~--~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~-------~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|.|.. .+++.+...+++++||.+||++|+.++|+|+++|+|+| .|+.|+|+.+|++| +|++|++|||+-
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y-~i~~g~~ihlvd 82 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYY-QCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGG-TCCTTCEEEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHC-CCCCCCEEEEEe
Confidence 345543 24456788999999999999999999999999999996 48889999999999 999999999987
Q ss_pred e
Q psy1973 73 K 73 (252)
Q Consensus 73 ~ 73 (252)
.
T Consensus 83 ~ 83 (86)
T 4b6w_A 83 L 83 (86)
T ss_dssp C
T ss_pred C
Confidence 6
No 132
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.48 E-value=4.3e-14 Score=101.31 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=57.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEE-------cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLA-------TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+.+++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++| ||++|++|||+-+.
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y-~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYY-QCRDEFVIHVVDLQ 84 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGG-TCCTTCEEEEEECC
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHC-CCCCCCEEEEEeCC
Confidence 478899999999999999999999999999996 58899999999999 99999999999875
No 133
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=9.1e-14 Score=102.66 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=59.3
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.++|++++||.+||++|+...|+|++.|+|+|+|+.|.|+.+|++| ||++|++|+|+.++
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH-GIHDGLTVHLVIKT 97 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGG-TCCTTCEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999 99999999999987
No 134
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-14 Score=105.94 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=63.9
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhccc--CCCCCCeEEEEcCeecCCCCCccccc-CCCCCCEEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQILDYP-QIKEGTKLNL 172 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~--gip~~~q~L~~~G~~L~d~~tL~~y~-~i~~gs~l~l 172 (252)
|.++|+.. .|+...+.+++.+++||.+||++|+... |+|+++|||+|+|+.|+|+.+|++|. +|++|++|||
T Consensus 8 m~i~Vk~~-----~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 8 VTLLVKSP-----NQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CEEEEECS-----SSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred EEEEEEeC-----CCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEE
Confidence 44455544 3442225888889999999999999998 99999999999999999999999993 3799999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
+++.
T Consensus 83 v~~~ 86 (93)
T 1wgd_A 83 VCNV 86 (93)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 9986
No 135
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.46 E-value=1.7e-14 Score=108.44 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=66.7
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|.|+|+.. .|+. +.+++.+++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|++
T Consensus 35 ~m~I~Vk~~-----~g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~ 106 (111)
T 2ojr_A 35 AMQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVL 106 (111)
T ss_dssp CEEEEEECS-----SSCE--EEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTT-TCCTTCEEEEEE
T ss_pred eEEEEEEcC-----CCCE--EEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEE
Confidence 356666654 4665 58999999999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
|.
T Consensus 107 rl 108 (111)
T 2ojr_A 107 RL 108 (111)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 136
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.46 E-value=8.5e-15 Score=119.70 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=69.8
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
-.|+|+|+.. .|++ +.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++| +|++|++|||+
T Consensus 104 ~eMqI~VKtl-----~Gkt--~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~Lv 175 (189)
T 3q3f_A 104 YGGQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLV 175 (189)
T ss_dssp CCEEEEEECT-----TSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGG-TCCTTCEEEEC
T ss_pred cceeeeeecC-----CCCE--EEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHC-CCCCCCEEEEE
Confidence 3588888877 6776 58999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
++.
T Consensus 176 lrl 178 (189)
T 3q3f_A 176 LRL 178 (189)
T ss_dssp CCC
T ss_pred EEc
Confidence 987
No 137
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=2.3e-14 Score=106.97 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=63.0
Q ss_pred HHHHHHHhhcccccc---ccceeeee--------cCCc-ccHHHHHHHhhccc--CCCCCC-eEEEEcCeecCCCCCccc
Q psy1973 96 SYKFLRKYFTETQSN---KIADEFIK--------VNSE-MSILELKNKINEAL--KIPVSD-QKLLATGRPLLDTKQILD 160 (252)
Q Consensus 96 m~i~vk~~~~~~~~g---~~~~~~i~--------v~~~-~tV~~lK~~i~~~~--gip~~~-q~L~~~G~~L~d~~tL~~ 160 (252)
|.|+||.. .| +. +.++ |.++ +||.+||++|+... |+|+++ |+|+|+|+.|.|+++|++
T Consensus 13 ~~i~Vk~~-----~~~~~~~--~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~ 85 (107)
T 1x1m_A 13 WHLAVKLA-----DQPLAPK--SILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDF 85 (107)
T ss_dssp CCEEEEET-----TCTTSCC--EEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHH
T ss_pred eEEEEEeC-----CCCCccE--EEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHH
Confidence 55666654 33 34 4677 5554 99999999999999 999999 999999999999999999
Q ss_pred ccCCCCCCEEEEEEec
Q psy1973 161 YPQIKEGTKLNLVVKR 176 (252)
Q Consensus 161 y~~i~~gs~l~l~~~~ 176 (252)
| +|++|++|||+.+.
T Consensus 86 y-~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 86 Y-GIQPGSTVHVLRKS 100 (107)
T ss_dssp H-TCCTTCEEEEEESS
T ss_pred c-CCCCCCEEEEEeCC
Confidence 9 99999999999987
No 138
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=6.8e-14 Score=103.52 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=60.0
Q ss_pred cccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCC-CCcccccCCCCCCEEEEEEec
Q psy1973 110 NKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDT-KQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 110 g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~~i~~gs~l~l~~~~ 176 (252)
|++ +.++|.+++||.+||++|+...|+|+++|+|+|+|+.|.|+ ++|++| +|++|++|+|+.+.
T Consensus 21 ~~~--~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~y-gI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 21 EVT--FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY-GLKDGDMVVLLQKD 85 (102)
T ss_dssp CCE--EEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHH-TCCTTEEEEECBCC
T ss_pred ceE--EEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHC-CCCCCCEEEEEECC
Confidence 355 58999999999999999999999999999999999999988 699999 99999999999986
No 139
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.45 E-value=2.2e-13 Score=99.78 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=62.3
Q ss_pred EEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCe---e----cCCCccccccCCCCCCCEEEEEE
Q psy1973 2 KISVKVLQG--QEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR---P----LLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 2 ~i~Vk~~~g--~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~---~----L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.|+|+.... +.++++|++++||.+||++|+.++|+|+++|+|+|.|+ . ++|+++|++| +|.+|++|+|+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y-~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFF-SPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHH-CCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHC-CCCCCCEEEEEe
Confidence 567776544 36889999999999999999999999999999999883 3 4889999999 999999999975
Q ss_pred e
Q psy1973 73 K 73 (252)
Q Consensus 73 ~ 73 (252)
.
T Consensus 95 ~ 95 (97)
T 2kj6_A 95 L 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.44 E-value=1.1e-13 Score=123.91 Aligned_cols=73 Identities=33% Similarity=0.460 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEE-EEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE---ALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKL-NLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~---~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i-~l~~~~ 74 (252)
|+|+||+++|+++.++|++++||.+||++|+. ++|+|+++|+|+|+|+.|+|+++|++| +|+++++| +|+.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dy-gI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTT-CCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHc-CCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999 578999999999999999999999999 99999999 555554
No 141
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.44 E-value=1.1e-13 Score=103.34 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=66.0
Q ss_pred CEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEEcCe-----------e----cCCCccccccCCCCC
Q psy1973 1 MKISVKVLQGQEIFLDVN-SEMSILELKNKINEALKIPVSDQKLLATGR-----------P----LLDTKQILDYPQIKE 64 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~-~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~-----------~----L~d~~tL~~~~~i~~ 64 (252)
|+|+||+.+|.. .++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++|+.+|++| ||++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~-gi~~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSL-NLAH 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGT-CCCT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHC-CCCC
Confidence 789999999976 78999 999999999999999999999999999888 4 5889999999 9999
Q ss_pred CCEEEEEEe
Q psy1973 65 GTKLNLVVK 73 (252)
Q Consensus 65 ~s~i~l~~~ 73 (252)
|++|||...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999999876
No 142
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.44 E-value=8.7e-14 Score=105.16 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=61.9
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|++ +.++|++++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|||+++.
T Consensus 44 ~G~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~i~~g~~i~lv~rl 108 (115)
T 1we7_A 44 NGQG--LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMASGAVIHLALKE 108 (115)
T ss_dssp SSEE--EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHH-TCCSSCEEEEEECC
T ss_pred CCeE--EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHC-CCCCCCEEEEEEEc
Confidence 5676 58999999999999999999999999999999999999999999999 99999999999987
No 143
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.4e-14 Score=103.82 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=60.1
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEecC
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 177 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~ 177 (252)
+.+.+.++.||.+||++++...++|+++|+|+|+|+.|.|+.||.+| ||++|.+|||+++.+
T Consensus 29 ~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~-gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 29 IVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQH-GVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHH-SCCSSCEEEEEEEES
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHc-CCCCCCEEEEEEecC
Confidence 59999999999999999999999999999999999999999999999 999999999999974
No 144
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.44 E-value=1.4e-13 Score=103.37 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=61.3
Q ss_pred ccccceeeeecCC-cccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNS-EMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++.+ ++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|+++.
T Consensus 39 ~g~~--~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 39 DGQF--MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLRE 104 (111)
T ss_dssp SSCC--EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTT-TCSSSCEEEEECSS
T ss_pred CCcE--EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEc
Confidence 4565 5899998 9999999999999999999999999999999999999999 99999999999986
No 145
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=5.1e-14 Score=102.90 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=65.5
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.|.|+|+.. |+. +.++|.+++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|||++
T Consensus 17 ~m~i~Vk~~------g~~--~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~ 87 (96)
T 1wx8_A 17 IIRVSVKTP------QDC--HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVV 87 (96)
T ss_dssp EEEEEEECS------SSE--EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHH-TCCTTEEEECCB
T ss_pred cEEEEEEEC------CeE--EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHC-CCCCCCEEEEEE
Confidence 455666543 454 58899999999999999999999999999999999999999999999 999999999999
Q ss_pred ec
Q psy1973 175 KR 176 (252)
Q Consensus 175 ~~ 176 (252)
+.
T Consensus 88 ~~ 89 (96)
T 1wx8_A 88 RS 89 (96)
T ss_dssp CC
T ss_pred eC
Confidence 87
No 146
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.7e-13 Score=105.06 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=66.1
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..|.|+|+.. |+. +.++|.+++||.+||++|+...|+|+++|+|+|+|+.|.|+.+|++| +|++|++|+|+
T Consensus 31 ~~m~I~Vk~~------g~~--~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~lv 101 (125)
T 1j8c_A 31 KIIKVTVKTP------KEK--EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLV 101 (125)
T ss_dssp CCEEEEEECS------SCE--EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGT-TCSSSEEEEEE
T ss_pred CcEEEEEEeC------CeE--EEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEE
Confidence 3467777653 454 58999999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
.++
T Consensus 102 ~~~ 104 (125)
T 1j8c_A 102 IKR 104 (125)
T ss_dssp EC-
T ss_pred ecc
Confidence 997
No 147
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=1.7e-13 Score=100.26 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=59.5
Q ss_pred ccccee-eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEecC
Q psy1973 110 NKIADE-FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 177 (252)
Q Consensus 110 g~~~~~-~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~~ 177 (252)
|+. + .+++.+++||.+||++|++..|+|+++|||+|+|+.|.|+ +|++| +|++|++|+|+.+..
T Consensus 16 g~~--~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~-~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 16 KEK--FEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI-KMKNGMTVLMMGSAD 80 (96)
T ss_dssp TEE--EEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSC-CCCSSCEEECCCCCC
T ss_pred CEE--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHC-CCCCCCEEEEEecch
Confidence 454 5 4899999999999999999999999999999999999999 99999 999999999998863
No 148
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.41 E-value=1.8e-13 Score=122.61 Aligned_cols=74 Identities=30% Similarity=0.376 Sum_probs=64.7
Q ss_pred hHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhc---ccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEE-
Q psy1973 95 ASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINE---ALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKL- 170 (252)
Q Consensus 95 ~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~---~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l- 170 (252)
.|.|+||.+ .|++ +.++|.+++||.+||++|+. +.|+|+++|||+|+|+.|.|+++|++| +|++|++|
T Consensus 7 ~M~I~VKtl-----~Gk~--~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dy-gI~~gstIv 78 (368)
T 1oqy_A 7 AVTITLKTL-----QQQT--FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVV 78 (368)
T ss_dssp CCCEEEEET-----TTEE--EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTT-CCCTTSCEE
T ss_pred eEEEEEEeC-----CCCE--EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHc-CCCCCCEEE
Confidence 366677766 5666 58999999999999999999 678999999999999999999999999 99999999
Q ss_pred EEEEec
Q psy1973 171 NLVVKR 176 (252)
Q Consensus 171 ~l~~~~ 176 (252)
+|+.|.
T Consensus 79 ~lv~k~ 84 (368)
T 1oqy_A 79 VMVTKT 84 (368)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 666554
No 149
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=5.1e-13 Score=97.49 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=62.7
Q ss_pred CEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC---ee----cCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQ-EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG---RP----LLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~-~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G---~~----L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+.|+|+..... .+.+++++++||.+||++|+.++|+|+++|+|+|.| +. ++|+.+|++| ||.+|++|||+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y-~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSY-PVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSS-SCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHC-CCCCCCEEEEEE
Confidence 35778775553 588999999999999999999999999999999987 43 5899999999 999999999875
Q ss_pred e
Q psy1973 73 K 73 (252)
Q Consensus 73 ~ 73 (252)
.
T Consensus 87 ~ 87 (95)
T 1v6e_A 87 H 87 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.41 E-value=1.8e-14 Score=117.23 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|++|+|+.+|+ ++++|||+++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs------~~STLhLvlRL 68 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT------DDVTYYLSLKL 68 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc------CCCEEEEEEec
Confidence 899999999999999999999999999999999999999999999999999999887 68999999984
No 151
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=1.1e-12 Score=95.48 Aligned_cols=73 Identities=10% Similarity=0.265 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+.+.+.|.+++++..|+++++++.|+++.+++|+|+|+.|.++.|+++| ++.+|++|+++++.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~~ 80 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 80 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999974
No 152
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.40 E-value=2.5e-13 Score=98.17 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=60.8
Q ss_pred ccccceeee-ecCCcccHHHHHHHhhcccCCCCCCeEEE---EcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFI-KVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i-~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+ ++.+++||.+||++|++..|+|+++|+|+ |+|+.|.|+.+|++| +|++|++|+|+...
T Consensus 15 ~g~~--~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~-~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 15 GGQE--YSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL-KLKPNTKIMMMGTR 83 (90)
T ss_dssp TTEE--EEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH-TCCTTEEEEEECCC
T ss_pred CCEE--EEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc-CCCCCCEEEEEecC
Confidence 3555 589 99999999999999999999999999999 999999999999999 99999999999876
No 153
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=1.4e-14 Score=105.87 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=58.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|++ +.+++.+++||.+||++|+...|+|+++|+|+|+|+.| |+.+|++| +|++|++|+|+.+.
T Consensus 25 ~g~~--~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~-~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 25 NKTK--HDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREI-KVTSGAKIMVVGST 88 (95)
T ss_dssp TTEE--EEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHH-CCCTTEEEEECCSS
T ss_pred CCEE--EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHC-CCCCCCEEEEEecc
Confidence 3555 58999999999999999999999999999999999999 55699999 99999999999876
No 154
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-14 Score=102.23 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHHHHHhhccccccccceeee-ecCCcccHHHHHHHhhc-ccCCCCCCeEEEEc--CeecCCCCCcccccCCCCCCEEE
Q psy1973 96 SYKFLRKYFTETQSNKIADEFI-KVNSEMSILELKNKINE-ALKIPVSDQKLLAT--GRPLLDTKQILDYPQIKEGTKLN 171 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i-~v~~~~tV~~lK~~i~~-~~gip~~~q~L~~~--G~~L~d~~tL~~y~~i~~gs~l~ 171 (252)
|.|+|+.. .|+...+.+ +|.+++||.+||++|++ +.|+|+++|||+|. |+.|.|+.+|++| +|++|++|+
T Consensus 11 M~I~Vk~~-----~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y-~i~~~stl~ 84 (88)
T 2dzj_A 11 YEVEILDA-----KTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKL-PVGTTATLY 84 (88)
T ss_dssp EEEEEEES-----SSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTS-SCCSEEEEE
T ss_pred EEEEEECC-----CCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHc-CCCCCCEEE
Confidence 55566655 444322468 99999999999999999 58999999999976 9999999999999 999999987
Q ss_pred E
Q psy1973 172 L 172 (252)
Q Consensus 172 l 172 (252)
+
T Consensus 85 ~ 85 (88)
T 2dzj_A 85 F 85 (88)
T ss_dssp E
T ss_pred E
Confidence 6
No 155
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.39 E-value=2.5e-14 Score=105.24 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=61.3
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcc-cCCC-CCCeEEEEcCeecCCCCCccccc-CCCCCCEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEA-LKIP-VSDQKLLATGRPLLDTKQILDYP-QIKEGTKL 170 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~-~gip-~~~q~L~~~G~~L~d~~tL~~y~-~i~~gs~l 170 (252)
..|.|+||.. .|+...+++++.+++||.+||++|+++ .|+| +++|||+|+|+.|+|+++|++|. +|++|++|
T Consensus 22 ~~m~I~VK~~-----~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 22 HPVTLIIKAP-----NQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp -CEEEEEECT-----TSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CeEEEEEEcC-----CCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 3466777765 455222588999999999999999986 5666 59999999999999999999993 49999999
Q ss_pred EEE
Q psy1973 171 NLV 173 (252)
Q Consensus 171 ~l~ 173 (252)
||+
T Consensus 97 hLv 99 (99)
T 2kdb_A 97 HLV 99 (99)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 156
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.9e-14 Score=104.89 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=58.9
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEE--cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|++++|||+++|+|+| .|+ |.|+.+|++| +|++|++|||++..
T Consensus 17 ~Gk~--~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~-~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 17 RDRN--VDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL-HLPKNNSLYVLTPD 82 (100)
T ss_dssp SSCE--EEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH-CCCSEEEEEECCSS
T ss_pred CCeE--EEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc-CCCCCCEEEEEecC
Confidence 5776 589999999999999999999999999999996 566 9999999999 99999999999876
No 157
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=5.2e-13 Score=96.76 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=57.0
Q ss_pred eeeecCCc-----ccHHHHHHHhhcccCCCCCCeEEEEcCeecCC-CCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSE-----MSILELKNKINEALKIPVSDQKLLATGRPLLD-TKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+++.++ .||.+||++|+...|+|+++|+|+|+|+.|.| +.+|++| +|++|++|||+.+.
T Consensus 19 ~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~-~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 19 HDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSAL-GIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHH-TCCSSEEEEEESCC
T ss_pred EEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHC-CCCCCCEEEEEecC
Confidence 47888885 99999999999999999999999999999999 5589999 99999999999876
No 158
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.37 E-value=6.3e-13 Score=95.19 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=63.8
Q ss_pred CEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEEc--CeecC---CCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLD-VNSEMSILELKNKINEALKIPVSDQKLLAT--GRPLL---DTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~-v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~--G~~L~---d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+||+.+|+. .+. +++++||.+||.+|++++|+|+++|+|+|+ ++.|. |+.+|++| ||.+|++|+|...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~-gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDL-PIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTS-SCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHc-CCCCCCEEEEEeC
Confidence 899999999965 477 999999999999999999999999999987 47774 68999999 9999999998755
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.37 E-value=3.6e-13 Score=98.56 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=55.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCe---e----cCCCCCcccccCCCCCCEEEEEEe
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGR---P----LLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~---~----L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
+.+++.+++||.+||++|+.++|+|+++|||+|.|+ . +.|+++|++| +|++|++|+|+-.
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y-~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFF-SPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHH-CCCSCCEEEEEEC
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHC-CCCCCCEEEEEeC
Confidence 589999999999999999999999999999999883 3 4889999999 9999999999864
No 160
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.37 E-value=2.8e-12 Score=88.76 Aligned_cols=70 Identities=10% Similarity=0.269 Sum_probs=67.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|+++.+++|+|+|+.|.++.|.++| ++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l-~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTT-TCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999986
No 161
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.36 E-value=4.9e-13 Score=97.57 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=54.2
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEc--Ce---ec-CCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLAT--GR---PL-LDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--G~---~L-~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
+.+++.+++||.+||++|+.++|+|+++|||+|. |+ .| +|+++|++| +|++|++|+|+-
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y-~i~~gstihlvD 94 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYY-ANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHH-CCSSSCEEEEEE
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHC-CcCCCCEEEEEC
Confidence 5889999999999999999999999999999998 45 44 899999999 999999999973
No 162
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.36 E-value=2.3e-12 Score=98.36 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=63.2
Q ss_pred CEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC---e---e-cCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQ-EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG---R---P-LLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~-~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G---~---~-L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|.|+|+..++. .+.+.+++++||.+||.+|+.++|+|+++|+|+|.| + . ++|+.+|++| ||.+|++|||+.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y-~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL-GVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT-TCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHC-CCCCCCEEEEEe
Confidence 36778875553 588999999999999999999999999999999987 4 2 4889999999 999999999987
Q ss_pred e
Q psy1973 73 K 73 (252)
Q Consensus 73 ~ 73 (252)
.
T Consensus 86 ~ 86 (122)
T 1t0y_A 86 V 86 (122)
T ss_dssp C
T ss_pred C
Confidence 5
No 163
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.34 E-value=9.3e-14 Score=112.98 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
|+|||+++ +|++ ++++|++++||.+||++|+..+|||+++|+|+|+|++|+|+.+|+ ++++|||++|
T Consensus 1 MqI~VKtL-----~Gkt--itLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs------~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTL-----EGET--KIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT------DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcC-----CCCE--EEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc------CCCEEEEEEe
Confidence 78899987 6776 499999999999999999999999999999999999999998887 7899999998
Q ss_pred c
Q psy1973 176 R 176 (252)
Q Consensus 176 ~ 176 (252)
.
T Consensus 68 L 68 (189)
T 2xzm_9 68 L 68 (189)
T ss_dssp -
T ss_pred c
Confidence 6
No 164
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=7.1e-12 Score=90.58 Aligned_cols=73 Identities=10% Similarity=0.265 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|+++.+++|+|+|+.|.++.|.++| ++.+|++|++++..
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q 78 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 78 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999 99999999999874
No 165
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.32 E-value=1.9e-12 Score=114.30 Aligned_cols=72 Identities=25% Similarity=0.324 Sum_probs=66.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---EcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~---~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+. +|+.+.++|++++||.+||++|++++|+||++|+|+ |+|+.|.|+.+|++| +|++|++|+|+.++
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~-~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISAL-ELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSS-CCC--CEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHc-CCCCCCEEEEEccc
Confidence 5789997 899999999999999999999999999999999999 899999999999999 99999999998874
No 166
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=2.6e-12 Score=93.67 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=55.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC---ee----cCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATG---RP----LLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G---~~----L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+++.+++||.+||++|+...|+|+++|||+|.| +. ++|+++|++| ||++|++|||+-..
T Consensus 21 ~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y-~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 21 SEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSY-PVDDGCRIHVIDHS 88 (95)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSS-SCCTTCEEEEBCCS
T ss_pred EEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHC-CCCCCCEEEEEECC
Confidence 58899999999999999999999999999999987 43 5899999999 99999999998654
No 167
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.29 E-value=1.5e-11 Score=86.55 Aligned_cols=70 Identities=11% Similarity=0.214 Sum_probs=67.1
Q ss_pred CEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQ-EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~-~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
|+|+|+..+|+ .+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|..+| ++.+|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l-~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADL-GLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHH-TCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEe
Confidence 67999999996 899999999999999999999999999999999999999999999999 99999999975
No 168
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.29 E-value=5.1e-13 Score=116.66 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=68.1
Q ss_pred hhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 93 RDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 93 ~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
.+.|+|+|+.. .|+. +.++|++++||.+||++|+...|+|+++|||+|+|+.|.|+.+|++| +|++|++|+|
T Consensus 231 ~~~MqI~VKtl-----~Gk~--~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdy-gI~~gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTL-----TGKT--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHL 302 (307)
T ss_dssp CCCEEEEEECT-----TSCE--EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEE
T ss_pred CCeEEEEEEeC-----CCCE--EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHc-CCCCCCEEEE
Confidence 35677888876 5776 58999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
++|.
T Consensus 303 vlRL 306 (307)
T 3ai5_A 303 VLRL 306 (307)
T ss_dssp EC--
T ss_pred EEeC
Confidence 9875
No 169
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.28 E-value=1.9e-11 Score=88.78 Aligned_cols=72 Identities=10% Similarity=0.261 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|+..+|+.+.|.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|..+| ++.+|++|++++.
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl-~medgD~Idv~~~ 89 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHc-CCCCCCEEEEEee
Confidence 57899999999999999999999999999999999999999999999999999999999 9999999999987
No 170
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=2.3e-11 Score=90.03 Aligned_cols=73 Identities=10% Similarity=0.265 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+|+..+|+.+.|.|.+++++..|+.+++++.|+++.+++|+|+|+.|.++.|..+| ++.+|++|++++..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q 97 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 97 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTT-TCCTTEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999 99999999998863
No 171
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.21 E-value=1.1e-12 Score=97.80 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=61.6
Q ss_pred HHHHHHHhhccccccccceeeeecC-CcccHHHHHHHhhcccCCCCCCeEEEEcCe-----------e----cCCCCCcc
Q psy1973 96 SYKFLRKYFTETQSNKIADEFIKVN-SEMSILELKNKINEALKIPVSDQKLLATGR-----------P----LLDTKQIL 159 (252)
Q Consensus 96 m~i~vk~~~~~~~~g~~~~~~i~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G~-----------~----L~d~~tL~ 159 (252)
|.|+|+.. .|+. .++|+ +++||.+||++|+.+.|+|+++|+|+|.|+ . +.|+.+|+
T Consensus 8 M~irvrs~-----~G~~---~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSR-----DGLE---RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECS-----SCEE---EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECC-----CCCE---EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHH
Confidence 44455544 5553 78899 999999999999999999999999999988 4 57889999
Q ss_pred cccCCCCCCEEEEEEec
Q psy1973 160 DYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 160 ~y~~i~~gs~l~l~~~~ 176 (252)
+| ||++|++|||+...
T Consensus 80 ~~-gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 80 SL-NLAHGSMVYLAYEG 95 (107)
T ss_dssp GT-CCCTTCEEECCCSS
T ss_pred HC-CCCCCCEEEEEeCC
Confidence 99 99999999999875
No 172
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.20 E-value=1.6e-11 Score=93.59 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=55.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC---e---e-cCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATG---R---P-LLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G---~---~-L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+++.+++||.+||++|+...|+|+++|||+|.| + . +.|+++|++| ||++|++|||+...
T Consensus 20 ~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y-~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 20 MEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL-GVRDGYRIHAVDVT 87 (122)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT-TCCSSEEEEEEECT
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHC-CCCCCCEEEEEeCC
Confidence 48899999999999999999999999999999987 4 2 4789999999 99999999999865
No 173
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.19 E-value=6.8e-11 Score=87.63 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|+. +|+.+.|.|..++++..|+.+++++.|+++.+++|+|+|+.|.++.|..+| ++.+|++|++.+.
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl-~medgD~Idv~~~ 102 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHRE 102 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEEC
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEee
Confidence 5789999 999999999999999999999999999999999999999999999999999 9999999999887
No 174
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.17 E-value=3.1e-11 Score=90.10 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+|+..+|+.+.|.|.+++++..|+.+++++.|+++.+++|+|+|+.|.++.|..+| ++.+|++|++++.
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl-~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEEL-GMEDDDVIDAMVE 98 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHH-HCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEc
Confidence 67999999999999999999999999999999999999999999999999999999999 9999999999987
No 175
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.12 E-value=8.5e-12 Score=89.24 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=55.6
Q ss_pred ccccceeeee-cCCcccHHHHHHHhhcccCCCCCCeEEEEc--CeecC---CCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIK-VNSEMSILELKNKINEALKIPVSDQKLLAT--GRPLL---DTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--G~~L~---d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. .+. +++++||.+||++|+++.|+|+++|+|+|+ |+.|. |+.+|++| ||++|++|++....
T Consensus 9 ~G~~---~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~-gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 9 GGTH---LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDL-PIQSGDMLIVEEDQ 78 (86)
T ss_dssp TEEE---EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTS-SCCTTCEEECCCCS
T ss_pred CCCE---EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHc-CCCCCCEEEEEeCC
Confidence 5553 566 999999999999999999999999999987 47774 67899999 99999999987654
No 176
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.08 E-value=4.2e-10 Score=82.15 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=61.2
Q ss_pred EEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC------e-ec-CCCccccccCCCCCCCEEEE
Q psy1973 2 KISVKV---LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG------R-PL-LDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~---~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G------~-~L-~d~~tL~~~~~i~~~s~i~l 70 (252)
+|+|+. .+|..+...++++.||.+||.+|+..+|+|+..|+|+|.+ . .| +|..+|.+| ++.+|++||+
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y-~i~~G~~I~V 89 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFY-SVENGDCLLV 89 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGG-TCCTTCEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhc-CCCCCCEEEE
Confidence 466665 4677889999999999999999999999999999998873 1 25 678999999 9999999999
Q ss_pred EEe
Q psy1973 71 VVK 73 (252)
Q Consensus 71 ~~~ 73 (252)
...
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 775
No 177
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.05 E-value=8.3e-11 Score=103.74 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=59.2
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE---EcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+++++++||.+||++|++..|+|+++|+|+ |+|+.|.|+.+|++| +|++|++|+|+...
T Consensus 13 ~g~~--~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~-~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 13 SGKE--YPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISAL-ELKPNFKLMMVGST 80 (320)
T ss_dssp TTEE--EEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSS-CCC--CEEEEECCC
T ss_pred CCEE--EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHc-CCCCCCEEEEEccc
Confidence 4565 58999999999999999999999999999999 899999999999999 99999999999876
No 178
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=6.6e-10 Score=80.69 Aligned_cols=65 Identities=9% Similarity=0.249 Sum_probs=61.5
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|++.++++.|+|++++||+|.|+.|.++.|+++| ++++|++|+++++.
T Consensus 16 ~g~~--i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~~ 80 (94)
T 2io1_B 16 DGSV--VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 80 (94)
T ss_dssp TSCE--EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECC
T ss_pred CCCE--EEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 5665 48899999999999999999999999999999999999999999999 99999999999986
No 179
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=4.1e-09 Score=78.85 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++|.|+..+|..+.|.|..++++..|+...+++.|+++..++|+|+|..|.++.|..++ ++.+|++|.+.+.
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL-~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTT-TCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHc-CCCCCCEEEEEee
Confidence 46888888899999999999999999999999999999999999999999999999999 9999999999875
No 180
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.91 E-value=2.3e-09 Score=73.91 Aligned_cols=62 Identities=10% Similarity=0.253 Sum_probs=58.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+|+. +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|.++| ++++|++|++.
T Consensus 10 ~g~~--v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l-~medgD~Idv~ 71 (72)
T 1wm3_A 10 DGSV--VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVF 71 (72)
T ss_dssp TSCE--EEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTT-TCCTTEEEEEE
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEE
Confidence 5665 48999999999999999999999999999999999999999999999 99999999986
No 181
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=4.4e-09 Score=75.83 Aligned_cols=65 Identities=9% Similarity=0.249 Sum_probs=61.3
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|.++| ++++|++|+++.+.
T Consensus 14 ~g~~--v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q 78 (91)
T 2io0_B 14 DGSV--VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 78 (91)
T ss_dssp TSCE--EEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 5665 48999999999999999999999999999999999999999999999 99999999999876
No 182
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.80 E-value=8.5e-09 Score=75.14 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=53.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC-------eec-CCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATG-------RPL-LDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G-------~~L-~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+...+.++.||.+||.+|+..+|+|+..|+|.|.+ ..| .|.++|+.| +|.+|++||+....
T Consensus 25 ~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y-~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 25 LEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFY-SVENGDCLLVRWSG 93 (97)
T ss_dssp EEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGG-TCCTTCEEEEECCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhc-CCCCCCEEEEEecC
Confidence 47788899999999999999999999999999873 225 567799999 99999999998754
No 183
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.80 E-value=8.7e-09 Score=74.58 Aligned_cols=65 Identities=9% Similarity=0.249 Sum_probs=60.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+| ++.+|++|+++++.
T Consensus 26 ~g~~--i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl-~medgD~Idv~~~q 90 (93)
T 2d07_B 26 DGSV--VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 90 (93)
T ss_dssp TSCE--EEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred CCCE--EEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeec
Confidence 5664 48899999999999999999999999999999999999999999999 99999999999875
No 184
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.78 E-value=1.1e-08 Score=71.80 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=58.1
Q ss_pred ccc-cceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 109 SNK-IADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 109 ~g~-~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+|+ . +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+| ++++|++|++.
T Consensus 16 ~g~~~--i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l-~medgD~Idv~ 78 (79)
T 3a4r_A 16 EKHQM--LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADL-GLESGDLIEVW 78 (79)
T ss_dssp STTCE--EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHH-TCCTTCEEEEE
T ss_pred CCCEE--EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEe
Confidence 564 4 48999999999999999999999999999999999999999999999 99999999985
No 185
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=1.1e-08 Score=75.59 Aligned_cols=65 Identities=9% Similarity=0.249 Sum_probs=61.2
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+| ++++|++|+++++.
T Consensus 33 ~g~~--i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q 97 (104)
T 1wz0_A 33 DGSV--VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 97 (104)
T ss_dssp SSCE--EEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTT-TCCTTEEEEECCCC
T ss_pred CCCE--EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 5665 48999999999999999999999999999999999999999999999 99999999999875
No 186
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=5.1e-08 Score=79.91 Aligned_cols=72 Identities=11% Similarity=0.218 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
++|+|+. +|....|.|..++++..|++..+++.|+++.+++|+|+|+.|.++.|..++ ++.+|++|++....
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL-~MEdgD~Idv~~~q 101 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 101 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEecc
Confidence 4678874 899999999999999999999999999999999999999999999999999 99999999999884
No 187
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.70 E-value=2.1e-08 Score=74.12 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=60.6
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+| ++++|++|+++++.
T Consensus 39 ~g~~--i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl-~medgD~Idv~~~q 103 (106)
T 2eke_C 39 GSSE--IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 103 (106)
T ss_dssp SSCE--EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred CCcE--EEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEeec
Confidence 3555 48899999999999999999999999999999999999999999999 99999999999875
No 188
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.64 E-value=2.6e-07 Score=63.37 Aligned_cols=70 Identities=13% Similarity=0.281 Sum_probs=64.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVS-DQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~-~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.+.+++.....+.+.|.++.+|.+|-+..+.+.||+++ ..+|.|.|..|+.+.++.+| ++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dl-emeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQST-ELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGS-SCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhh-CCcCCceeeeee
Confidence 35567766677999999999999999999999999999 89999999999999999999 999999999875
No 189
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.62 E-value=6.3e-08 Score=78.09 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=67.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
++|+|+ .+|..+.|.|..++++..|++..+++.|+++..++|+|+|+.|.++.|..++ +|.+|++|++++..
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDL-dMEDGDtIDV~leQ 129 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDL-DMEDNDIIEAHREQ 129 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTT-TCCTTEEEEECCCC
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEec
Confidence 467786 4889999999999999999999999999999999999999999999999999 99999999999874
No 190
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.61 E-value=1.6e-08 Score=75.30 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=61.2
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|..+| ++++|++|++++..
T Consensus 35 ~g~~--i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl-~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 35 DGAE--MFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEEL-GMEDDDVIDAMVEQ 99 (110)
T ss_dssp TSCC--EEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHH-HCSSEEEEEEECCC
T ss_pred CCCE--EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEcc
Confidence 5665 48999999999999999999999999999999999999999999999 99999999999875
No 191
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.54 E-value=4.5e-08 Score=68.78 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=58.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCee---c--CCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRP---L--LDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~---L--~d~~tL~~~~~i~~~s~i~l~ 71 (252)
|.|.||+.+| ++.+++++++|+.+|+++|++.++++++.|.++++..+ | .++.+|+++ ||+.|++|++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~l-gl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLL-KIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTT-CCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHc-CCCCCCEEEEe
Confidence 6788999877 56788999999999999999999999999888765443 3 478899999 99999999874
No 192
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.43 E-value=1.1e-06 Score=63.22 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=55.0
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeec--CCCccccccCCCCCCCEEEEEEe
Q psy1973 7 VLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPL--LDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 7 ~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L--~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
...+..+.+.+.+.+||..||++|++++|||+.+|+|+|.|+.| +.+..-..||.-.....|.|.-+
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 34567789999999999999999999999999999999999764 66777788865555666666543
No 193
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.40 E-value=3.5e-08 Score=80.68 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|+|+| ..+|+...|.|..++++..|++..+++.|+++.+++|+|+|+.+.++.|..++ ++.+|++|+++...
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL-~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHc-CCCCCCEEEEEecc
Confidence 57888 67889899999999999999999999999999999999999999999999999 99999999999874
No 194
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.38 E-value=1.9e-06 Score=62.57 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=64.6
Q ss_pred CEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQ-EIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~-~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
+.|.|+..+|. .+.|.|..++++..|....+++.|+++...+|+|+|..|..+.|..++ ++.+|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dL-dMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADL-GMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHH-TCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEe
Confidence 36778888885 789999999999999999999999999999999999999999999999 99999999874
No 195
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.25 E-value=2.1e-06 Score=64.09 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=60.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+.|.+++++..|+...+++.|+++.++||+|.|+.|.++.|..++ ++.+|++|.++...
T Consensus 49 dg~e--v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL-~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 49 DSSE--IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQ 113 (115)
T ss_dssp TSCE--EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECC
T ss_pred CCCE--EEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHc-CCCCCCEEEEEeec
Confidence 4554 48889999999999999999999999999999999999999999999 99999999998763
No 196
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.19 E-value=2.3e-06 Score=61.53 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeec--CCCCCcccccCCCCCCEEEEEEe
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPL--LDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L--~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
+.+.+.+.+||..+|++|++++|||+.+|+|+|.|+.| +.++....||.-....-|.|+-+
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 48889999999999999999999999999999999764 55667778876667777776654
No 197
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3e-06 Score=69.35 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=61.3
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.+.|.+++++..|+...+++.|+++.++|++|.|+.|.++.|..++ ++.+|++|+++...
T Consensus 37 ~g~~--v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL-~MEdgD~Idv~~~q 101 (200)
T 3pge_A 37 GSSE--IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 101 (200)
T ss_dssp SSCE--EEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred CCCE--EEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEecc
Confidence 4665 48999999999999999999999999999999999999999999999 99999999999886
No 198
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4.5e-06 Score=67.36 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=61.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+|+. +.+.|.+++++..|+...+++.|+++.++|++|.|+.|.++.|..++ ++.+|++|++++..
T Consensus 65 dG~e--V~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDL-dMEDGDtIDV~leQ 129 (207)
T 3tix_A 65 GSSE--IFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDL-DMEDNDIIEAHREQ 129 (207)
T ss_dssp SSCE--EEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTT-TCCTTEEEEECCCC
T ss_pred CCCE--EEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEec
Confidence 4665 48899999999999999999999999999999999999999999999 99999999999886
No 199
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.10 E-value=1.6e-05 Score=56.93 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=66.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++|.|+. +|....|.+..++....|.+..+++.|++++..+++|+|..+.++.|-.++ ++.+|++|.+++-
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L-~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTL-KLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHH-TCCSSCEEEEEEC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHc-CCCCCCEEEEEEe
Confidence 3678885 788899999999999999999999999999999999999999999999999 9999999999875
No 200
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.08 E-value=5.3e-07 Score=79.97 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
++|.|+. +|+...|.|..++++..|++..+++.|+++.+++|+|+|+.|.++.|.+++ ++++|++|.+...
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L-~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHRE 92 (360)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHc-CCCccchhhhhhc
Confidence 3567776 677789999999999999999999999999999999999999999999999 9999999999987
No 201
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.97 E-value=2e-05 Score=65.10 Aligned_cols=71 Identities=11% Similarity=0.209 Sum_probs=66.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.|.|+. .|+...|.|..++++..|++..+++.|+++.+++|+|+|+.+.++.|..++ ++.++++|.+....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L-~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 93 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTT-TCCTTEEEEEECSC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHh-hhcccccchhhccc
Confidence 577776 677889999999999999999999999999999999999999999999999 99999999998874
No 202
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.97 E-value=2.8e-05 Score=55.16 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|.|+|-..+|+...+.|.|+.++.++-+...+++|+.+++..|.|+++.|+-+..+.-. |+.+|+++.|+..
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRls-gLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFA-NLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHH-CCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEec-CCCCCCEEEEEEc
Confidence 67889888999999999999999999999999999999999999999999999999999 9999999999876
No 203
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.96 E-value=1.1e-06 Score=71.93 Aligned_cols=75 Identities=8% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 93 RDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 93 ~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
...|.+.| .. .|+. +.++|.+++++..|+...+++.|+++.++|++|+|+.+.++.|..++ ++++|++|++
T Consensus 19 ~e~InLKV-~q-----dGse--V~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL-~MEDGDtIDV 89 (227)
T 3v7o_A 19 ETHINLKV-SD-----GSSE--IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eC-----CCCE--EEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHc-CCCCCCEEEE
Confidence 34566666 33 5665 48999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEec
Q psy1973 173 VVKR 176 (252)
Q Consensus 173 ~~~~ 176 (252)
+...
T Consensus 90 ~leQ 93 (227)
T 3v7o_A 90 HREQ 93 (227)
T ss_dssp ----
T ss_pred Eecc
Confidence 9876
No 204
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.92 E-value=6.8e-06 Score=57.50 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=49.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCee-----cCCCCCcccccCCCCCCEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRP-----LLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~-----L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+.|++++++|+.+|+++|++..+++++.|.+.++..+ +..+.+|+++ ||+.|+.|++.
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~l-gl~hGd~l~l~ 78 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLL-KIKHGDLLFLF 78 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTT-CCCTTCCEEC-
T ss_pred EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHc-CCCCCCEEEEe
Confidence 4788999999999999999999999988887765544 3477799999 99999999874
No 205
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.90 E-value=3e-05 Score=53.16 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=56.1
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCC-CeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVS-DQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
+.+.+.++.+|..|-..-+.+.|||++ ..+|.|.|..|..+.++.+| ++.+|+.|.+++
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dl-emeD~D~IDvmL 81 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQST-ELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGS-SCCTTCEEEEEC
T ss_pred eEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhh-CCcCCceeeeee
Confidence 588899999999999999999999999 99999999999999999999 999999999875
No 206
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.79 E-value=3.4e-05 Score=58.51 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=58.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVS-------------------------------------DQKLL 44 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~-------------------------------------~q~L~ 44 (252)
.+.|+.++|...++.|+.+.+|.+++..|+.+.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999999855 33442
Q ss_pred E--cCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 45 A--TGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 45 ~--~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
. .+.-|+++.+|.++ ||.++++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQ-GI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQ-GVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHH-TCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHc-CCCCCCEEEEEEE
Confidence 1 11346889999999 9999999887654
No 207
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.55 E-value=0.00053 Score=61.23 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=105.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEE------cCeecCCCccccccCCCCCCCEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALK----IPVSDQKLLA------TGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~g----i~~~~q~L~~------~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
.+.|... +.+.++.++++.||.++...|.++.. .+.++.-|+. +|.=|+++++|..| ++.+|+.+...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y-~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYY-MLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGG-TCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHh-CCCCCceeecc
Confidence 3555554 67788999999999999999988874 3567778877 34458888999999 99999998887
Q ss_pred EecccccccccccCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCC-CCCeEEEEcC-
Q psy1973 72 VKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIP-VSDQKLLATG- 149 (252)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~~G- 149 (252)
.++ +.+.|..+ +|.. ..+.+++..|+.++-..|+.+.|+. .+..-|.+..
T Consensus 83 ~~~---------------------~~~~V~l~-----dg~~--~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~ 134 (371)
T 3ivf_A 83 KKQ---------------------RPLKIRML-----DGTV--KTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELM 134 (371)
T ss_dssp ECE---------------------EEEEEECT-----TSCE--EEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC-
T ss_pred Cce---------------------eEEEEECc-----CCCE--EEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEec
Confidence 653 11123333 4555 4888999999999999999999986 4445565532
Q ss_pred --------eecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 150 --------RPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 150 --------~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.-|...+++.+. ++....++++.+|-
T Consensus 135 ~~~~~~~~~wL~~~k~l~~q-~~~~~~~l~frvKf 168 (371)
T 3ivf_A 135 EEKKDDELNWLDHGRTLREQ-GVEEHETLLLRRKF 168 (371)
T ss_dssp ---------CCCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred ccccchHHHHHhcCchhHhh-CCCCCceEEEEEEE
Confidence 235566677777 77777777776663
No 208
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.54 E-value=1.2e-05 Score=72.54 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.|+|+. .|....|.|..++++..|++..+++.|+++.+++|+|+|+.|.++.|..++ ++.+|++|.+....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l-~med~d~i~~~~~q 102 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDL-DMEDNDIIEAHREQ 102 (389)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEeeeeecc
Confidence 466666 667788999999999999999999999999999999999999999999999 99999999998874
No 209
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.50 E-value=0.00028 Score=49.17 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=56.9
Q ss_pred EEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CeEEEEcCeecCCCccccccCCCCCCCEEEE
Q psy1973 2 KISVKV--LQGQEIFLDVNSEMSILELKNKINEALKIPVS-----DQKLLATGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 2 ~i~Vk~--~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~-----~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
+|++.. ..|+.+.+.++...||..|++.+.+.++++.. +.++.-+|..|.++..|++| +|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~-~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDC-GITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGG-TCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeC-CcCCCCEEEE
Confidence 566664 57899999999999999999999999987652 23555677789999999999 9999999865
No 210
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.24 E-value=0.0022 Score=44.77 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=58.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeec---CCCccccccCCCCCCCEEEEEE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPL---LDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L---~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|.||..+|..+.-.++.++||.+|...|.. .+.+.....|+ |-.+.| +.+.+|.+. |+.++++|++-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~-gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEV-KLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTT-TCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHC-CCCCCCEEEEEe
Confidence 5889999999888889999999999999998 57777888887 456777 357899999 999999888754
No 211
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.16 E-value=0.00061 Score=49.17 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=54.7
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
+.+.|..+.+...|...-+++.|+++...+++|.|..|..+.|..++ ++++|++|.+.
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dL-dMEDgD~IDv~ 96 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADL-GMESGDLIEVW 96 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHH-TCCTTEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEe
Confidence 47888899999999999999999999999999999999999999999 99999999875
No 212
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.11 E-value=0.0012 Score=54.32 Aligned_cols=61 Identities=10% Similarity=0.175 Sum_probs=58.1
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+.+..+++...|+...+++.|++++++|++|.|+.+.++.|..+. .+.+++.|.+..+.
T Consensus 33 v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L-~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 93 (209)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTT-TCCTTEEEEEECSC
T ss_pred EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHh-hhcccccchhhccc
Confidence 47888899999999999999999999999999999999999999999 99999999998775
No 213
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.90 E-value=0.00028 Score=62.57 Aligned_cols=74 Identities=8% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 94 DASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 94 ~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..+.+.|+. .|+. +.++|..+++...|+...+++.|++++++|++|.|+.+.++.|..++ ++++|++|.++
T Consensus 20 ~~I~LKV~~------~g~~--v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L-~MEDgD~Idv~ 90 (360)
T 3ix6_A 20 THINLKVSD------GSSE--IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAH 90 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEec------CCcE--EEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHc-CCCccchhhhh
Confidence 345556652 2444 48899999999999999999999999999999999999999999999 99999999999
Q ss_pred Eec
Q psy1973 174 VKR 176 (252)
Q Consensus 174 ~~~ 176 (252)
...
T Consensus 91 ~~Q 93 (360)
T 3ix6_A 91 REQ 93 (360)
T ss_dssp ---
T ss_pred hcc
Confidence 875
No 214
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.90 E-value=0.0017 Score=45.98 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=57.6
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+.|.|+.++.++-+...+++|+.+++..|.|+++.|.-+.++.-. |+.+|++|.|+.+.
T Consensus 22 ~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRls-gLpnnAkLELv~~s 82 (90)
T 2al3_A 22 HTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFA-NLPNNAKLEMVPVS 82 (90)
T ss_dssp EEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHH-CCCSSCEEEEECSS
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEec-CCCCCCEEEEEEcc
Confidence 59999999999999999999999999999999999999988899999 99999999998765
No 215
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.69 E-value=0.01 Score=43.56 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=60.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeecC---CCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL---DTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~---d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+|.||..+|..+.-.++.++||.+|...|....+.+.....|+ |-.+.+. .+++|.+. |+.+.++|++...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~el-gL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDL-ELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGG-TCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHC-CCCCceEEEEEEC
Confidence 5889999999988899999999999999999988776777776 5567775 37899999 9999888887654
No 216
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.64 E-value=0.0037 Score=44.63 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=57.4
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+.+..++....|...-+++.|++++..|++|.|..+.++.|-.++ ++++|++|.+++-+
T Consensus 33 v~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L-~meD~DiID~~~~~ 93 (95)
T 2l76_A 33 VRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTL-KLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHH-TCCSSCEEEEEECC
T ss_pred EEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHc-CCCCCCEEEEEEec
Confidence 48888899999999999999999999999999999999999999999 99999999998765
No 217
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.50 E-value=0.0098 Score=44.75 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=59.4
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeec--C-CCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPL--L-DTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L--~-d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.|.||..+|..+.-.++.++||.+|...|... +.+.....|+ |-.+.| . .+.+|.+. |+.+..+|+|...
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~-gL~psa~Liv~~~ 119 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFVQES 119 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTT-TCCSSBCCEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHC-CCCCceEEEEEEc
Confidence 58899999999888999999999999999887 7777778886 557778 3 37999999 9999888887643
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.36 E-value=0.0018 Score=49.00 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=50.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCC-------------------------------------CeEEEE--cC
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVS-------------------------------------DQKLLA--TG 149 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~L~~--~G 149 (252)
.|.. .++.|+.+.+|.+++..|+.+.||+.. .|+|-. .+
T Consensus 20 Dg~~--ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~ 97 (128)
T 2kc2_A 20 DGTV--KTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDEL 97 (128)
T ss_dssp TSCE--EEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSE
T ss_pred CCCE--EEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCC
Confidence 5666 499999999999999999999999743 233321 23
Q ss_pred eecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 150 RPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 150 ~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
..|.+++||.++ ||.++++|-|..|
T Consensus 98 ~WLD~srtL~EQ-GI~e~~tllLRrK 122 (128)
T 2kc2_A 98 NWLDHGRTLREQ-GVEEHETLLLRRK 122 (128)
T ss_dssp EEECSSSCHHHH-TCCTTSEEEEEES
T ss_pred CcccCCCcHHHc-CCCCCCEEEEEEE
Confidence 567889999999 9999999766543
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.13 E-value=0.00089 Score=60.19 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=0.0
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+.+..+++...|+...+++.|+++.+++++|+|+.+.++.|..++ ++++|++|.++...
T Consensus 42 ~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l-~med~d~i~~~~~q 102 (389)
T 4da1_A 42 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDL-DMEDNDIIEAHREQ 102 (389)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEeeeeecc
Confidence 48899999999999999999999999999999999999999999999 99999999998775
No 220
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.07 E-value=0.0041 Score=43.22 Aligned_cols=61 Identities=8% Similarity=0.170 Sum_probs=52.1
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCC-----CCeEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPV-----SDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~-----~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l 172 (252)
.|++ +-+.++...||..|++.+.+.++++. .+.|..-+|..|.++.+|++| +|.+|+.|.+
T Consensus 15 ~~~~--~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~-~ItnGD~Lei 80 (81)
T 2bps_A 15 NGSV--FDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDC-GITNGDRLEI 80 (81)
T ss_dssp TCCE--EEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGG-TCCTTCEEEE
T ss_pred CCce--EEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeC-CcCCCCEEEE
Confidence 4565 58999999999999999999988753 356667789999999999999 9999999875
No 221
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.55 E-value=0.048 Score=39.87 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=57.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--EcCeecC--CCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL--DTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~--d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+|.||..+|+.+.-.++.++||.+|...|... +..+....|+ |-.+.|. .+.||.+. |+.+..+|+|...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~-gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDI-GITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHH-TCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHc-CCCCCeEEEEEeC
Confidence 68899999998888899999999999999975 5556677775 5577775 47999999 9999988877654
No 222
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.46 E-value=0.024 Score=41.61 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=44.1
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCC------CCCeEEEEc----CeecCCC-------------CCcccccCCCCCCE
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIP------VSDQKLLAT----GRPLLDT-------------KQILDYPQIKEGTK 169 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~~----G~~L~d~-------------~tL~~y~~i~~gs~ 169 (252)
+.+.|-..|||.++|++|-+. .|.| +++..|-+. |+.|.|. +||+.| +|.+|++
T Consensus 26 i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~dgat 104 (111)
T 4e71_A 26 IPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHY-NVRDGAT 104 (111)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHH-TCCTTCE
T ss_pred eeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhc-CCCCCCE
Confidence 488899999999999999654 3555 356667762 4556652 489999 9999999
Q ss_pred EEEEEe
Q psy1973 170 LNLVVK 175 (252)
Q Consensus 170 l~l~~~ 175 (252)
+.|+.+
T Consensus 105 l~l~~~ 110 (111)
T 4e71_A 105 LILSKV 110 (111)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988754
No 223
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.96 E-value=0.065 Score=40.34 Aligned_cols=65 Identities=14% Similarity=0.257 Sum_probs=52.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--EcCeecCC-CccccccCCCCCCCE
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEAL-KIPVSDQKLL--ATGRPLLD-TKQILDYPQIKEGTK 67 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~-gi~~~~q~L~--~~G~~L~d-~~tL~~~~~i~~~s~ 67 (252)
+|.||..+|..+.-.++.++||.+|...|.... +.......|+ |-.+.|.| +.||.+. |+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~ea-gL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEA-NLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHH-TCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHC-CCcCceE
Confidence 588999999998889999999999999999864 4555667776 45777865 6999999 9987433
No 224
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.96 E-value=0.065 Score=40.13 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=47.0
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCC------CCCeEEEE-cC---e-ecCCC-------------CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIP------VSDQKLLA-TG---R-PLLDT-------------KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~G---~-~L~d~-------------~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .|.| +++..|-+ .| + .|.|. +||..| +|.+|+
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY-~V~dga 97 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY-KIPEGA 97 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT-TCCTTC
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc-CCCCCC
Confidence 488899999999999999654 3555 46777876 23 3 36652 589999 999999
Q ss_pred EEEEEEec
Q psy1973 169 KLNLVVKR 176 (252)
Q Consensus 169 ~l~l~~~~ 176 (252)
++.|+.+.
T Consensus 98 tv~l~~~~ 105 (127)
T 3h6n_A 98 SLAMSLID 105 (127)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99998765
No 225
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.40 E-value=0.1 Score=35.34 Aligned_cols=60 Identities=17% Similarity=0.382 Sum_probs=46.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~ 71 (252)
|+|+|+..+.....++++.+.||.+|-+. .|+++..-.+..||+.+..+. . + +|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~----~--l-~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ----S--V-EVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS----S--S-CCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH----C--C-CCCEEEEE
Confidence 89999998555566899999999988765 899998887788998775444 2 2 37777664
No 226
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.28 E-value=0.06 Score=39.87 Aligned_cols=61 Identities=30% Similarity=0.424 Sum_probs=46.0
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCC------CCCeEEEE-cCe----ecCCC-------------CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIP------VSDQKLLA-TGR----PLLDT-------------KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~G~----~L~d~-------------~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .|.| +++..|-+ .|. .|.|. +||+.| +|.+|+
T Consensus 29 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~dga 107 (117)
T 4e74_A 29 VPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHY-QVPDGS 107 (117)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHH-TCCTTC
T ss_pred eEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEecccccc-CCCCCC
Confidence 488899999999999999654 3555 34566766 342 24442 489999 999999
Q ss_pred EEEEEEec
Q psy1973 169 KLNLVVKR 176 (252)
Q Consensus 169 ~l~l~~~~ 176 (252)
++.|+.|.
T Consensus 108 tl~l~~~~ 115 (117)
T 4e74_A 108 VVALVSKQ 115 (117)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998765
No 227
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.22 E-value=0.062 Score=40.84 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=46.2
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCCC------CCeEEEE----cCe-ecCCC-------------CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIPV------SDQKLLA----TGR-PLLDT-------------KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~----~G~-~L~d~-------------~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .|+|. ++.-|-+ .|+ .|.|. +||+.| +|.+|+
T Consensus 43 i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY-~V~Dga 121 (138)
T 2r2o_A 43 VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHY-KVPDGA 121 (138)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHH-TCCTTC
T ss_pred eeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhcc-CCCCCC
Confidence 589999999999999999765 35653 3455655 243 36654 489999 999999
Q ss_pred EEEEEEec
Q psy1973 169 KLNLVVKR 176 (252)
Q Consensus 169 ~l~l~~~~ 176 (252)
+|.|+.+.
T Consensus 122 ~l~l~~~~ 129 (138)
T 2r2o_A 122 TVALVPCL 129 (138)
T ss_dssp EEEEEEC-
T ss_pred EEEEEECC
Confidence 99998876
No 228
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.061 Score=31.89 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHhcC-ChHHHH-HHHHHHHHHHH
Q psy1973 192 TILRDASYKFLRKYF-TETQSN-KIADEFIKEFN 223 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~-~~~~~~-~~~~~~~k~~~ 223 (252)
+.+|+.|+..|...| +..++. +++++++|+|+
T Consensus 5 ~VPWd~Ie~lL~~~~~d~~~a~~~~L~RLqkGWe 38 (41)
T 3vej_A 5 TVPWDDIEALLKNNFENDQAAVRQVMERLQKGWS 38 (41)
T ss_dssp TSCHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhcChHHHHHHHHHHHHhccc
Confidence 457999999999888 455554 89999999997
No 229
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.03 E-value=0.092 Score=36.43 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=54.4
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc---CeecCCCccccccCCCCC
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT---GRPLLDTKQILDYPQIKE 64 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~---G~~L~d~~tL~~~~~i~~ 64 (252)
++.|+....+...+.|+|..++.+|--.|.++..+.|..-.|.-. +..|+-+++|.+| ||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndl-girE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDL-GLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHH-TCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhh-hhhh
Confidence 567778777888899999999999999999999999998888643 5578999999999 9986
No 230
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.90 E-value=0.24 Score=34.22 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=53.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.-.++-..++..||..++.+.|++-+.-.++..+..|+++++|.+. +++-...+.+.+.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQ-cVqgeGlVQinvq 64 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQ-GVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTS-SCCCCSEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHh-hcccccEEEEEEE
Confidence 3456667889999999999999999999999999999999999999 9999999988876
No 231
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.89 E-value=0.4 Score=35.07 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=43.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEE-c---CeecCCC-------------ccccccCCCCC
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEAL--KIPV------SDQKLLA-T---GRPLLDT-------------KQILDYPQIKE 64 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~--gi~~------~~q~L~~-~---G~~L~d~-------------~tL~~~~~i~~ 64 (252)
+..+.+.|-.-+||.++|++|-... |.|. ++..|-+ . |+.|.|. .||..| +|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHY-NVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHH-TCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhc-CCCC
Confidence 3457788889999999999998763 4543 3445654 2 4456441 488999 9999
Q ss_pred CCEEEEEEe
Q psy1973 65 GTKLNLVVK 73 (252)
Q Consensus 65 ~s~i~l~~~ 73 (252)
|+++-|+.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988653
No 232
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.73 E-value=0.13 Score=35.52 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=49.3
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecC---CCCCcccccCCCCCCEEEEEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL---DTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~---d~~tL~~y~~i~~gs~l~l~~ 174 (252)
+|+. +.-....++||.+|..-|.. .+.+.....|+ |-.+.+. .+.||.+. |+.++++|.+--
T Consensus 16 dG~r--~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~-gL~p~a~L~ve~ 82 (84)
T 3qx1_A 16 SGEF--LERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEV-KLFPQETLFLEA 82 (84)
T ss_dssp TSCE--EEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTT-TCCSEEEEEEEE
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHC-CCCCCCEEEEEe
Confidence 4554 26677789999999999988 56777888888 5578784 46799999 999999998854
No 233
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.1 Score=33.61 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=29.5
Q ss_pred CcchhHHHHHHHHHhcC-ChHHHH-HHHHHHHHHHHH
Q psy1973 190 NVTILRDASYKFLRKYF-TETQSN-KIADEFIKEFNK 224 (252)
Q Consensus 190 ~~~~~~~~~~~~l~~~~-~~~~~~-~~~~~~~k~~~~ 224 (252)
.-+..|+.|+..|...| .+..+. .++++++|+|+-
T Consensus 26 ~l~VPWd~Ie~lL~n~l~n~~~A~~~~LqRLQKGWeL 62 (64)
T 2lnz_A 26 ELTVPWDDIEALLKNNFENDQAAVRQVMERLQKGWSL 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcChHHHHHHHHHHHHhhhcc
Confidence 34778999999999988 666676 799999999973
No 234
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.31 E-value=0.27 Score=40.31 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=50.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--E-cCe--ecCC-CccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVS-DQKLL--A-TGR--PLLD-TKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~-~q~L~--~-~G~--~L~d-~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+++.++..+||.+|++++...++++++ .-||. + .+. .|.| +.||.++ ++.++..|.+-++
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~-~l~~~Q~illE~r 208 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA-GLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH-TCCTTCEEEEEEC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh-CCCCCCEEEEEEe
Confidence 567889999999999999999999987 57874 3 232 5655 5799999 9999999998887
No 235
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.29 E-value=0.17 Score=37.77 Aligned_cols=59 Identities=27% Similarity=0.299 Sum_probs=41.8
Q ss_pred eeeecCCcccHHHHHHHhhcc----cCCCC----CCeEEEE-cCe---ecCC----------C----CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA----LKIPV----SDQKLLA-TGR---PLLD----------T----KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~----~gip~----~~q~L~~-~G~---~L~d----------~----~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .|.|. ++..|-+ .|. .|.| + +||+.| +|.+|+
T Consensus 41 v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY-~V~Dga 119 (126)
T 3kuz_A 41 ISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHY-EISNGS 119 (126)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGG-TCCTTC
T ss_pred eEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEecccccc-CCCCCC
Confidence 588899999999999999543 36654 4455554 222 2222 1 378899 999999
Q ss_pred EEEEEE
Q psy1973 169 KLNLVV 174 (252)
Q Consensus 169 ~l~l~~ 174 (252)
+|.++-
T Consensus 120 tlal~k 125 (126)
T 3kuz_A 120 TIKVFK 125 (126)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 998764
No 236
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.05 E-value=0.2 Score=34.73 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=37.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcC
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATG 47 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G 47 (252)
.|+|.. ..++.+.|+++.+..+|..+|.++.+++++.-.|.|.-
T Consensus 7 ~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEES--SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 455544 37899999999999999999999999999888998864
No 237
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.80 E-value=0.54 Score=38.90 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=50.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEE-c----CeecCC-CccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVS-DQKLLA-T----GRPLLD-TKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~-~q~L~~-~----G~~L~d-~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+++.++..+||.+|++++...++++++ .-||.. . ...|.| +.+|.++ ++.++..|.+-++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~-~L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA-GLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT-TCCTTEEEEEEEC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh-CCCCCCEEEEEEe
Confidence 456779999999999999999999997 578853 3 225665 6899999 9999999999887
No 238
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.75 E-value=1.2 Score=29.49 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=44.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+|+...++ ..+++....||.+|.+.+ ++++..-.+..+|..+..+. . +++|+.|.+..
T Consensus 5 m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~----~--L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDDGK-KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE----E--IFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETTEE-EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS----B--CCTTCEEEEEE
T ss_pred EEEEEeCccCc-eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc----c--CCCCCEEEEEe
Confidence 67777764333 467888889999998875 67777777889998886554 2 67888888764
No 239
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=92.45 E-value=0.48 Score=44.16 Aligned_cols=134 Identities=10% Similarity=0.124 Sum_probs=78.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCC---CCCeEE--EEcCe---ecCCCccccccCCCCCCCEEEEEEecccccccccc
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIP---VSDQKL--LATGR---PLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSV 83 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~---~~~q~L--~~~G~---~L~d~~tL~~~~~i~~~s~i~l~~~~~~~~~~~~~ 83 (252)
.+.+-++.+.||.||-+.+..+.+++ ....+| +++|+ .+.++.++..+ +=....++.+-.-+.. + -..
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i-~d~~~~~~rieeip~e--e-~~~ 428 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL-SPATSRTFRIEEIPLD--Q-VDI 428 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS-CCCTTCEEEEEECCGG--G-SSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc-cccccceEEEEECCHH--H-hcc
Confidence 36667888999999999999999987 355666 47887 46778888866 2212555554433211 0 000
Q ss_pred cCCCCcchhhhhHHHHHHHhhccccccccceeeeecCCcccHHHHHHHhhcccCCC---CCCeEE--EEcCe--ecCCCC
Q psy1973 84 AGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIP---VSDQKL--LATGR--PLLDTK 156 (252)
Q Consensus 84 ~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip---~~~q~L--~~~G~--~L~d~~ 156 (252)
......-.. . .-|-+.. ....|.. |.+.|.+++|..++|++|+.+.|++ .+..++ +-.++ .+.|+.
T Consensus 429 ~~~~~~li~--V-~hf~k~~--~~~~G~P--F~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d 501 (530)
T 2ylm_A 429 DKENEMLVT--V-AHFHKEV--FGTFGIP--FLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDE 501 (530)
T ss_dssp CTTTEEEEE--E-EEESSST--TCEEEEE--EEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTT
T ss_pred CCCCcEEEE--E-EEeccCc--ccccCCC--eEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCcc
Confidence 000000000 0 0000000 0013554 6889999999999999999999998 345554 33343 466654
No 240
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.25 E-value=0.64 Score=35.23 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEE-c---Ce-ecCCC-------------ccccccCCCCC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEAL--KIPV------SDQKLLA-T---GR-PLLDT-------------KQILDYPQIKE 64 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~--gi~~------~~q~L~~-~---G~-~L~d~-------------~tL~~~~~i~~ 64 (252)
..+.+.|-.-+||.++|++|-... |+|. ++.-|-+ . |+ .|.|. .||..| +|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY-~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHY-KVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHH-TCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhcc-CCCC
Confidence 347889999999999999998874 4543 2334533 2 33 35442 389999 9999
Q ss_pred CCEEEEEEe
Q psy1973 65 GTKLNLVVK 73 (252)
Q Consensus 65 ~s~i~l~~~ 73 (252)
|+++-|+.+
T Consensus 120 ga~l~l~~~ 128 (138)
T 2r2o_A 120 GATVALVPC 128 (138)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEC
Confidence 999999876
No 241
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=91.45 E-value=0.44 Score=32.85 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=52.2
Q ss_pred eecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 117 i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
-.++-..++..||+.++.+.|+..+...+...+..|+++++|.+- +++-...+.+-+.-
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQ-cVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQ-GVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTS-SCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHh-hcccccEEEEEEEE
Confidence 344456788999999999999999999999999999999999999 99999999888764
No 242
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.25 E-value=1.8 Score=32.30 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=46.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEE-cC---e-ecCC---------C----ccccccCCCC
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEAL--KIPV------SDQKLLA-TG---R-PLLD---------T----KQILDYPQIK 63 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~--gi~~------~~q~L~~-~G---~-~L~d---------~----~tL~~~~~i~ 63 (252)
+..+.+.|-.-+||.++|++|-... |+|. ++..|-+ .| + .|.| . .||..| +|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY-~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY-KIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT-TCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc-CCC
Confidence 4457888889999999999998763 4443 4556654 33 3 2543 1 589999 999
Q ss_pred CCCEEEEEEe
Q psy1973 64 EGTKLNLVVK 73 (252)
Q Consensus 64 ~~s~i~l~~~ 73 (252)
+|+++-|..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999998765
No 243
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=90.81 E-value=0.75 Score=33.41 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=53.0
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecC--C-CCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL--D-TKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~--d-~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.-....++||.+|..-|....+.+.....|+ |-.+.+. | +.||.+. |+.+.++|.+....
T Consensus 22 dG~r--l~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~el-gL~psa~L~v~~~~ 91 (109)
T 2dzk_A 22 DGSS--FTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDL-ELAPSASVVLLPAG 91 (109)
T ss_dssp SSCE--EEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGG-TCSSEEEEEEECCS
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHC-CCCCceEEEEEECc
Confidence 4554 37788899999999999999888777778887 5677786 3 5699999 99999999887654
No 244
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=89.49 E-value=0.98 Score=37.29 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=51.5
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCC-CeEEEE-c----CeecCC-CCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVS-DQKLLA-T----GRPLLD-TKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~----G~~L~d-~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+++.++..+||.+|++.+...++++.+ ..||-. . ...|.| +.+|.++ ++.+|..|-+-++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~-~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA-GLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT-TCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh-CCCCCCEEEEEEec
Confidence 367778999999999999999999987 688864 3 335665 4799999 99999999999986
No 245
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=89.20 E-value=0.54 Score=32.54 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=32.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EEc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKL-LAT 46 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L-~~~ 46 (252)
|+|.|= .++..|.+.|+++.+..+|+.+|..+..+. .+.+ .|+
T Consensus 13 ~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~yk 56 (85)
T 1ip9_A 13 TKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKL 56 (85)
T ss_dssp EEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECC
T ss_pred eEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEec
Confidence 344552 356789999999999999999999999883 4444 344
No 246
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=88.89 E-value=2 Score=28.46 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=45.5
Q ss_pred CEEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQE-IFLDVNSEMSILELKNKINEALKIPV--SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~-~~~~v~~~~TV~~lK~~I~~~~gi~~--~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|.|+|+.+..-. -.+++ ...||.+|.+.+..+.++.. ..-.+..||+.+.+ .+. -+++|+.|.+..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~-~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNT-PLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTC-CCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCc-CCCCCCEEEEEC
Confidence 889998876422 34666 67899999999987544332 33456678876542 355 688999988764
No 247
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.73 E-value=4.7 Score=28.25 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=46.3
Q ss_pred CEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEEcCeecCCCccccccCCC
Q psy1973 1 MKISVKVLQ------G-QEIFLDVNSEMSILELKNKINEALK-I----------PVSDQKLLATGRPLLDTKQILDYPQI 62 (252)
Q Consensus 1 M~i~Vk~~~------g-~~~~~~v~~~~TV~~lK~~I~~~~g-i----------~~~~q~L~~~G~~L~d~~tL~~~~~i 62 (252)
|+|+|+.+. | ....+++....||.+|.+.+..+.. + ......+..||+.... +. -+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~-~L 83 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE-EL 83 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC-BC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC-CC
Confidence 677887765 4 3567888888999999999988741 1 1233467788876642 56 68
Q ss_pred CCCCEEEEE
Q psy1973 63 KEGTKLNLV 71 (252)
Q Consensus 63 ~~~s~i~l~ 71 (252)
++|+.|.+.
T Consensus 84 ~dGDeV~i~ 92 (98)
T 1vjk_A 84 KDGDVVGVF 92 (98)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 899998775
No 248
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.57 E-value=1.8 Score=31.89 Aligned_cols=61 Identities=31% Similarity=0.494 Sum_probs=44.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEE-cC---e-ecCC---------C----ccccccCCCCCC
Q psy1973 12 EIFLDVNSEMSILELKNKINEAL--KIPV------SDQKLLA-TG---R-PLLD---------T----KQILDYPQIKEG 65 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~--gi~~------~~q~L~~-~G---~-~L~d---------~----~tL~~~~~i~~~ 65 (252)
.+.+.|-.-+||.++|++|-... |.|. ++..|-+ .| + .|.| . .||..| +|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHY-QVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHH-TCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEecccccc-CCCCC
Confidence 37788889999999999998763 5553 3445644 33 2 2443 1 588999 99999
Q ss_pred CEEEEEEe
Q psy1973 66 TKLNLVVK 73 (252)
Q Consensus 66 s~i~l~~~ 73 (252)
+++-|+.+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99999765
No 249
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.20 E-value=1.1 Score=39.39 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=50.6
Q ss_pred eeeecCCcccHHHHHHHhhcccC----CCCCCeEEEE------cCeecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 115 EFIKVNSEMSILELKNKINEALK----IPVSDQKLLA------TGRPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~g----ip~~~q~L~~------~G~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
-++.++++.||.+...+|.++.. .+.++.-|.. +|.-|.+.++|..| ++++|+.|....+
T Consensus 15 ~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y-~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 15 KTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYY-MLRNGDTMEYRKK 84 (371)
T ss_dssp EEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGG-TCCTTCEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHh-CCCCCceeeccCc
Confidence 38999999999999999988864 3577788877 56779999999999 9999999877643
No 250
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=87.43 E-value=0.95 Score=36.98 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=51.0
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCC-CeEEE--E-c--CeecCC-CCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVS-DQKLL--A-T--GRPLLD-TKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~-~q~L~--~-~--G~~L~d-~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+++.++..+||.+|++.+...++++.+ ..||- + . ...|.+ +.||.++ +|.+|..|-+-+|.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~-~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA-GLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH-TCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh-CCCCCCEEEEEEec
Confidence 478889999999999999999999986 68875 3 2 234666 4699999 99999999999986
No 251
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=86.56 E-value=0.81 Score=34.41 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=30.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLA 45 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~ 45 (252)
..+.|....|+.+|+..|++.+|+|+++|+|..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999964
No 252
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=86.33 E-value=1.3 Score=41.61 Aligned_cols=61 Identities=33% Similarity=0.419 Sum_probs=45.5
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCC------CCCeEEEE-cC---e-ecCCC-------------CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIP------VSDQKLLA-TG---R-PLLDT-------------KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~G---~-~L~d~-------------~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .|.| +++..|-+ .| + .|.|. +||++| +|.+|+
T Consensus 249 i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~Dga 327 (627)
T 3ig3_A 249 VPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHY-QVTDGS 327 (627)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTT-TCCTTC
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhc-CCCCCc
Confidence 488999999999999999654 3554 45666765 23 3 34442 489999 999999
Q ss_pred EEEEEEec
Q psy1973 169 KLNLVVKR 176 (252)
Q Consensus 169 ~l~l~~~~ 176 (252)
++.|+.+.
T Consensus 328 ~v~L~p~~ 335 (627)
T 3ig3_A 328 LVALVPKQ 335 (627)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99998776
No 253
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=85.97 E-value=0.81 Score=34.08 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=50.3
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeec--CC-CCCcccccCCCCCCEEEEEEe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPL--LD-TKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L--~d-~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.|.. +.-.+..++||.+|..-|... +.+.....|+ |-.+.| .| +.+|.+. |+.+.++|.|...
T Consensus 52 dG~r--l~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~-gL~psa~Liv~~~ 119 (124)
T 1wj4_A 52 DGKR--EQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFVQES 119 (124)
T ss_dssp TSCE--EEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTT-TCCSSBCCEEEEC
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHC-CCCCceEEEEEEc
Confidence 4554 367777899999999999886 7777788887 568888 34 6799999 9999998887643
No 254
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.63 E-value=1.6 Score=30.37 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=39.9
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 9 QGQEIFLDVNSE-MSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 9 ~g~~~~~~v~~~-~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|+. ++++.. .||.+|.+.+ ++++....+..||..+..+ ...+. -+++|+.|-++.
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~-~L~dGD~Vei~~ 82 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEV-ELCDRDVIEIVH 82 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTS-BCCSSSEEEEEE
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCc-CCCCCCEEEEEc
Confidence 5553 455666 8999998875 6777777788899877533 23445 588999998764
No 255
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=85.12 E-value=1.6 Score=41.17 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=45.4
Q ss_pred eeeecCCcccHHHHHHHhhcc--cCCC------CCCeEEEE-c---Ce-ecCCC-------------CCcccccCCCCCC
Q psy1973 115 EFIKVNSEMSILELKNKINEA--LKIP------VSDQKLLA-T---GR-PLLDT-------------KQILDYPQIKEGT 168 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~---G~-~L~d~-------------~tL~~y~~i~~gs 168 (252)
+.+.|-..|||.++|++|-+. .|.| +++..|-+ . |+ .|.|. +||++| +|.+|+
T Consensus 276 i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~dga 354 (644)
T 3hm6_X 276 VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHY-KVPDGA 354 (644)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTT-TCCTTC
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhc-CCCCCc
Confidence 488999999999999999643 3655 35556665 2 33 35552 499999 999999
Q ss_pred EEEEEEec
Q psy1973 169 KLNLVVKR 176 (252)
Q Consensus 169 ~l~l~~~~ 176 (252)
+|.|+.+.
T Consensus 355 ~v~L~p~~ 362 (644)
T 3hm6_X 355 TVALVPCL 362 (644)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecc
Confidence 99998765
No 256
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=84.62 E-value=4.6 Score=34.00 Aligned_cols=72 Identities=11% Similarity=0.143 Sum_probs=55.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEE---cCe--ecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLA---TGR--PLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~---~G~--~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|.+.|..++| ++.+.+++..|+.++-+.|..+.|+...+ .-|.| +|. -|+.++.+.+. ++..+....+.++.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q-~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQ-DVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGS-CBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhh-ccCCCCCEEEEEEE
Confidence 4688889988 67899999999999999999999997644 34555 233 36778889888 77766666666553
No 257
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.62 E-value=1.6 Score=29.18 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|+|+| +|+.+. + ...||.+|-+. .++++..--+..+|..+..+ ...+. -+++|+.|-++--
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~-~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDET-PVTAGDEIEILTP 61 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTC-BCCTTCEEEEECC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcc-cCCCCCEEEEEcc
Confidence 66665 566544 4 66899988765 68888888888999877432 34455 6889999887643
No 258
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=84.25 E-value=4.5 Score=27.89 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=44.1
Q ss_pred CEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhC-C-----C---C----CCeEEEEcCeecCCCccccccCC
Q psy1973 1 MKISVKVLQ------GQEIFLDVNSEMSILELKNKINEALK-I-----P---V----SDQKLLATGRPLLDTKQILDYPQ 61 (252)
Q Consensus 1 M~i~Vk~~~------g~~~~~~v~~~~TV~~lK~~I~~~~g-i-----~---~----~~q~L~~~G~~L~d~~tL~~~~~ 61 (252)
|+|+|+.+. |....+++ ...||.+|...+..++. + . . ....+..||....+..-+ +. -
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~-~ 77 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-AT-A 77 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GC-B
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-Cc-C
Confidence 778887654 43334664 56899999999988752 1 1 0 124667788766543333 34 4
Q ss_pred CCCCCEEEEEE
Q psy1973 62 IKEGTKLNLVV 72 (252)
Q Consensus 62 i~~~s~i~l~~ 72 (252)
+++|+.|.+..
T Consensus 78 L~~gDeV~i~P 88 (93)
T 3dwg_C 78 IADGDSVTILP 88 (93)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 89999988764
No 259
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=83.86 E-value=1.1 Score=29.06 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=42.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+. +++....||.+|.+.+ ++++..-.+..+|..+... ...+. -+++|+.|.+..
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~-~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQH-IVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTC-CCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCc-CCCCCCEEEEEe
Confidence 55655 5664 4567788999998875 6777777778899876432 22344 578889887764
No 260
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.69 E-value=5.5 Score=27.76 Aligned_cols=45 Identities=9% Similarity=0.150 Sum_probs=35.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEcC
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLATG 47 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~~G 47 (252)
+|.+. .+|..+.+.++++.+..+|.+++...++++..+ ..+.|..
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 44443 367888999999999999999999999987654 5666654
No 261
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=83.49 E-value=0.7 Score=34.75 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=29.8
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLA 147 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 147 (252)
++.|..+.|+.+|+..|++.+|+|+++|||-.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 77888999999999999999999999999864
No 262
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=83.28 E-value=6.1 Score=33.62 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=54.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEE--cCe--ecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLA--TGR--PLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~--~G~--~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+.+.|..++| ++.+.+++..|+.+|-+.|..+.|+...+ .-|.| +|. -|+.++.+.+. +++.+....+.++
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q-~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDH-DVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGS-SCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHc-CCCCCCCEEEEEE
Confidence 3577888898 78899999999999999999999997633 34555 343 37788899998 7766666555555
No 263
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.26 E-value=2.3 Score=30.67 Aligned_cols=64 Identities=17% Similarity=0.053 Sum_probs=48.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCCeEEE--EcCeecC--CCCCcccccCCCCCCEEEEEEec
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLL--DTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~--d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
.|+. +.-.+..++||.+|..-|... +.......|+ |-.+.|. .+.||.+. |+.+.++|.|..+-
T Consensus 32 dG~r--~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~-gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 32 NGRV--LRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDI-GITVDTVLNVEEKE 99 (109)
T ss_dssp TSCE--EEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHH-TCSSCEEEEEEECC
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHc-CCCCCeEEEEEeCC
Confidence 4553 366777899999999999865 5555677776 5677886 35799999 99999999876654
No 264
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=81.45 E-value=8.3 Score=28.59 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=41.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHH----hCCCCC----CeEEEE-cCe---ecCC----------C----ccccccCCCCC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEA----LKIPVS----DQKLLA-TGR---PLLD----------T----KQILDYPQIKE 64 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~----~gi~~~----~q~L~~-~G~---~L~d----------~----~tL~~~~~i~~ 64 (252)
..+.+.|-.-+||.++|++|-.. .|.|.+ +..|-+ .|. .|.| . .||..| +|.+
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY-~V~D 117 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHY-EISN 117 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGG-TCCT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEecccccc-CCCC
Confidence 35788888999999999998664 366643 344433 222 2322 1 478899 9999
Q ss_pred CCEEEEE
Q psy1973 65 GTKLNLV 71 (252)
Q Consensus 65 ~s~i~l~ 71 (252)
|+++-|+
T Consensus 118 gatlal~ 124 (126)
T 3kuz_A 118 GSTIKVF 124 (126)
T ss_dssp TCEEEEE
T ss_pred CCEEEEe
Confidence 9999775
No 265
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.36 E-value=2.3 Score=29.43 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=49.7
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEE---cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLA---TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
..+.|+|..+..++--.|.++..+.+....|.. .+.+|+-+++|.+| ||++ ++.+-.+
T Consensus 23 tVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndl-girE---Lya~d~~ 83 (91)
T 2daj_A 23 TIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDL-GLRE---LYAMDVN 83 (91)
T ss_dssp EEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHH-TCSE---EEEEECC
T ss_pred eEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhh-hhhh---hheeccc
Confidence 489999999999999999999999999888875 46678889999999 9998 6555443
No 266
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=79.93 E-value=6.9 Score=34.14 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCee--cCCCccccccCCCCCCCEEEEEE
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRP--LLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~--L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.....+.+.+..|+.++++++++.++++++.|.|++.+.. ++.......|+.=...+.+.+.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 385 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEE
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEe
Confidence 3446788899999999999999999999999999999843 34456666663223334444443
No 267
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=79.92 E-value=14 Score=26.23 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=56.3
Q ss_pred EEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEEcC---eecCCCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQG---QEIFLDVNSEMSILELKNKINEALKIPV--SDQKLLATG---RPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g---~~~~~~v~~~~TV~~lK~~I~~~~gi~~--~~q~L~~~G---~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.|+|...+. ...++.|..+.-|+-+.-++-++.+++. ++.-|..-- +.|.-..||..| ||+.++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDky-giqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKC-GVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHH-TCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhh-ceeeeeeeeccCC
Confidence 577877665 4488999999999999999998887765 445565543 367889999999 9999999887653
No 268
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=77.33 E-value=14 Score=24.98 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=40.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CC-----C-----CCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALK-IP-----V-----SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~g-i~-----~-----~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
....++++...||.+|.+.+..+.. +. . ....+..||+.... +. -+++|+.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~-~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GE-ATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TS-BCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----Cc-ccCCCCEEEEEC
Confidence 4577888888999999999988752 11 0 12467778887653 55 588899988764
No 269
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=77.30 E-value=14 Score=34.69 Aligned_cols=62 Identities=31% Similarity=0.438 Sum_probs=45.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEE-cC---e-ecCCC-------------ccccccCCCCC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEAL--KIP------VSDQKLLA-TG---R-PLLDT-------------KQILDYPQIKE 64 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~--gi~------~~~q~L~~-~G---~-~L~d~-------------~tL~~~~~i~~ 64 (252)
..+.+.|-.-+||.++|++|-... |.| +++.-|-+ .| + .|.|. .||.+| +|++
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHY-QVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTT-TCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhc-CCCC
Confidence 457788889999999999998763 444 34455643 23 3 34431 589999 9999
Q ss_pred CCEEEEEEe
Q psy1973 65 GTKLNLVVK 73 (252)
Q Consensus 65 ~s~i~l~~~ 73 (252)
|+++-|+.+
T Consensus 326 ga~v~L~p~ 334 (627)
T 3ig3_A 326 GSLVALVPK 334 (627)
T ss_dssp TCEEEEEEC
T ss_pred CceEEEEec
Confidence 999998766
No 270
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=76.40 E-value=11 Score=31.85 Aligned_cols=72 Identities=18% Similarity=0.035 Sum_probs=53.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEc---Ce--ecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLAT---GR--PLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~~---G~--~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|.+.|..++|....+.|++..|+.+|-..|.++.|+...+ .-|.|. |. -|+.++.+.+. ......++.+.++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q-~~~~~~~l~frvk 95 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ-VRGVPWNFTFNVK 95 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH-C---CCEEEEEES
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh-cCCCCcEEEEEEE
Confidence 5688999999999999999999999999999999987644 455543 32 36777888877 5444445555544
No 271
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.24 E-value=10 Score=35.45 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=55.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEc---Ce--ecCCCccccccCCCCCCCEEEEEEec
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLLAT---GR--PLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~~~---G~--~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
|.+.|..++| ++.|.|++..|+.+|-..|....|+.... .-|+|. |. -|+.+.++.+. ++..+..+.+.++.
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q-~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQ-DVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGS-CBCCCSSEEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHh-cccCCCCeEEEEEE
Confidence 3578888888 67899999999999999999999997543 456553 22 46778889888 88777766665553
No 272
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=75.18 E-value=3 Score=31.00 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=45.4
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcc-cCCCCCCeEEE--EcCeecCC-CCCcccccCCCCCCEE
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEA-LKIPVSDQKLL--ATGRPLLD-TKQILDYPQIKEGTKL 170 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~-~gip~~~q~L~--~~G~~L~d-~~tL~~y~~i~~gs~l 170 (252)
+|.. +.-.+..++||.+|..-|... .+.......|+ |-.+.+.| +.||.+. |+.+.+.|
T Consensus 61 dG~r--l~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~ea-gL~psavl 123 (127)
T 1s3s_G 61 DGGR--LVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEA-NLLNAVIV 123 (127)
T ss_dssp TTTE--EEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHH-TCSSCEEE
T ss_pred CCCE--EEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHC-CCcCceEE
Confidence 4654 377888999999999999885 34555667777 56888876 5799999 99986554
No 273
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=74.25 E-value=2.9 Score=28.30 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=43.3
Q ss_pred CEEEEEeCCCcEEEEEec--CCCCHHHHHHHHHHHhCCC-CCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVN--SEMSILELKNKINEALKIP-VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~--~~~TV~~lK~~I~~~~gi~-~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
|+|+| +|+.+ ++. ...||.+|-+. .+++ +..--+.+||..+..+ ...++ -+++|+.|-++-
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~-~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDAT-TVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHC-EECSSBCEEECC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcc-cCCCCCEEEEEe
Confidence 66766 56644 555 67899998775 5787 7777788999877543 34455 578889888754
No 274
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=73.88 E-value=15 Score=34.53 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEE-c---Ce-ecCCC-------------ccccccCCCCCC
Q psy1973 12 EIFLDVNSEMSILELKNKINEAL--KIPV------SDQKLLA-T---GR-PLLDT-------------KQILDYPQIKEG 65 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~--gi~~------~~q~L~~-~---G~-~L~d~-------------~tL~~~~~i~~~ 65 (252)
.+.+.|-.-+||.++|++|-... |.|. ++..|-+ . |+ .|.|. .||.+| +|++|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY-~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHY-KVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTT-TCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhc-CCCCC
Confidence 37788889999999999998652 5543 3444543 2 33 35442 589999 99999
Q ss_pred CEEEEEEe
Q psy1973 66 TKLNLVVK 73 (252)
Q Consensus 66 s~i~l~~~ 73 (252)
+++-|+.+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99988765
No 275
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.75 E-value=8.5 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
+|+.+. + ...||.+|.+.+ ++++..-.+..+|..+..+. ..+. -+++|+.|.+..
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~-~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDR-PLRDGDVVEVVA 59 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCC-CCCTTCEEEEEE
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCc-CCCCCCEEEEEe
Confidence 666554 4 678999998876 56666667788998775332 3344 588999988764
No 276
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=71.73 E-value=8.3 Score=36.89 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=38.2
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEc-CeecCCCCCcccc
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLAT-GRPLLDTKQILDY 161 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-G~~L~d~~tL~~y 161 (252)
.+.+.++.|+.+++..|++..||+++.|.+++. |..+......+.|
T Consensus 325 ~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 325 TYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp EEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred eeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 678889999999999999999999999999985 4455555566654
No 277
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=70.11 E-value=7.9 Score=25.07 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=40.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
|.++|...+|+. .++..+.|+.+|-..+....+ ..-.-...+|+..+-+ + -+.+|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~-~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----Y-VLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----C-BCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----c-CcCCCCEEEEEEC
Confidence 788998878885 567788999999888743321 1112234688765433 4 4667777776543
No 278
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=68.99 E-value=3.9 Score=28.13 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=33.3
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCe
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGR 150 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~ 150 (252)
+.|.|.++.+..+|..+|.++.++|++.-.|.|+..
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 589999999999999999999999999999999764
No 279
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=68.77 E-value=16 Score=25.15 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=39.2
Q ss_pred eeecCCc-ccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSE-MSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~-~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++... .||.+|.+.+ +++.....+..+|..+..+. ..+. -+++|+.|.++-
T Consensus 29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~-~~~~-~L~dGD~Vei~~ 82 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKER-YHEV-ELCDRDVIEIVH 82 (87)
T ss_dssp EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGG-TTTS-BCCSSSEEEEEE
T ss_pred EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhh-cCCc-CCCCCCEEEEEc
Confidence 5666676 8999999876 56666677788998776543 3345 599999998874
No 280
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=68.09 E-value=27 Score=24.24 Aligned_cols=68 Identities=12% Similarity=0.309 Sum_probs=42.2
Q ss_pred CEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhC-CCC-----C----Ce-------EEEEcCeecCCCcccc
Q psy1973 1 MKISVKVLQ------GQEIFLDVNSEMSILELKNKINEALK-IPV-----S----DQ-------KLLATGRPLLDTKQIL 57 (252)
Q Consensus 1 M~i~Vk~~~------g~~~~~~v~~~~TV~~lK~~I~~~~g-i~~-----~----~q-------~L~~~G~~L~d~~tL~ 57 (252)
|+|+|+... |. -.++++ ..||.+|.+.+..+.. +.. . .. .+..||+....... .
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~-~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG-L 80 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-T
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-C
Confidence 678888765 32 133444 6899999999988741 111 0 12 56778876543322 2
Q ss_pred ccCCCCCCCEEEEEE
Q psy1973 58 DYPQIKEGTKLNLVV 72 (252)
Q Consensus 58 ~~~~i~~~s~i~l~~ 72 (252)
++ -+++|+.|.+..
T Consensus 81 ~~-~L~~gD~V~i~p 94 (99)
T 2l52_A 81 ET-LLKDSDEIGILP 94 (99)
T ss_dssp TS-CCCTTEEEEEEC
T ss_pred CC-CCCCCCEEEEEC
Confidence 34 488999987753
No 281
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=67.95 E-value=22 Score=23.04 Aligned_cols=49 Identities=14% Similarity=0.356 Sum_probs=37.5
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....||.+|.+.+ +++.....+..+|..+..+. . +++|+.|.++-
T Consensus 17 ~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~----~--L~~gD~V~ii~ 65 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE----E--IFDGDIIEVIR 65 (70)
T ss_dssp EEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS----B--CCTTCEEEEEE
T ss_pred eEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc----c--CCCCCEEEEEe
Confidence 46777778999999876 45666667788999887653 3 88999998874
No 282
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=66.63 E-value=9.4 Score=33.24 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=42.9
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcC-eec-CCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATG-RPL-LDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G-~~L-~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+.+.+..|+.+++++++...+++++.|.|+|.+ ... ........||.=...+-|.++-
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (396)
T 4eut_A 325 KIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 385 (396)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEE
T ss_pred EEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEe
Confidence 5677889999999999999999999999999988 333 3444566663333334444443
No 283
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=66.54 E-value=18 Score=26.79 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEEE--cCeec-----CC--CccccccCCCCCCCEEEEEEe
Q psy1973 20 EMSILELKNKINEALKIPVSDQKLLA--TGRPL-----LD--TKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 20 ~~TV~~lK~~I~~~~gi~~~~q~L~~--~G~~L-----~d--~~tL~~~~~i~~~s~i~l~~~ 73 (252)
..|+.+|-+.+..++|... ...++- +.+.| +| +++|+++ |+++|+.|.++-.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dL-gv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEI-NLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTT-TCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHc-CcCCCcEEEEEcc
Confidence 4799999988988999864 444432 23333 23 5899999 9999999888754
No 284
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=65.95 E-value=30 Score=23.95 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=40.5
Q ss_pred CEEEEEeCC-------C-cEEEEEec--CCCCHHHHHHHHHHHhC-CCCCC------------eEEEEcCeecCCCcccc
Q psy1973 1 MKISVKVLQ-------G-QEIFLDVN--SEMSILELKNKINEALK-IPVSD------------QKLLATGRPLLDTKQIL 57 (252)
Q Consensus 1 M~i~Vk~~~-------g-~~~~~~v~--~~~TV~~lK~~I~~~~g-i~~~~------------q~L~~~G~~L~d~~tL~ 57 (252)
|+|+|+.+. | +...+++. ...||.+|...+.++.. ..+.- -.+..||...+-... .
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~ 80 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-K 80 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-G
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-C
Confidence 567777653 2 34666776 67899999999998863 11110 123344432110001 3
Q ss_pred ccCCCCCCCEEEEEE
Q psy1973 58 DYPQIKEGTKLNLVV 72 (252)
Q Consensus 58 ~~~~i~~~s~i~l~~ 72 (252)
++ -+++|+.|.+..
T Consensus 81 d~-~L~dgDeVa~~P 94 (99)
T 2qjl_A 81 DY-ILEDGDIISFTS 94 (99)
T ss_dssp GC-BCCTTCEEEEEE
T ss_pred Cc-CcCCCCEEEEEC
Confidence 45 588999987754
No 285
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=64.66 E-value=15 Score=27.31 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=35.8
Q ss_pred cccHHHHHHHhhcccCCC-------CCCeEEEEcCe-ecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 122 EMSILELKNKINEALKIP-------VSDQKLLATGR-PLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip-------~~~q~L~~~G~-~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
..|..+|-+.+..++|.. ...++|+|.-- .=.-+++|++. ||++|+.|.++--
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dL-gv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEI-NLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTT-TCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHc-CcCCCcEEEEEcc
Confidence 347777766676666653 23577777532 12234699999 9999999988753
No 286
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=63.99 E-value=23 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=25.2
Q ss_pred CEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHh
Q psy1973 1 MKISVKVLQ------G--QEIFLDVNS---EMSILELKNKINEAL 34 (252)
Q Consensus 1 M~i~Vk~~~------g--~~~~~~v~~---~~TV~~lK~~I~~~~ 34 (252)
|+|+|+... | +...++++. ..||.+|...+.+++
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL 56 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 678888765 3 245678873 369999999998876
No 287
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=63.59 E-value=37 Score=24.19 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=48.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---EcCee--cCCCccccccCCCCCCCEEEEEEec
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL---ATGRP--LLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~---~~G~~--L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
+...+++.+..+.|+.+++..+..+.+...+.+.|. ++|.. |+++..--.- .+.-+..|++..+.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~t-sL~~NgRLfvc~kd 87 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISK-SLEASGRIYVYRKD 87 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCC-SSCSSCEEEEEECC
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEe-eccccceEEEeehH
Confidence 556677888899999999999999999887788875 67764 4544433333 46677899988873
No 288
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=62.90 E-value=7.4 Score=36.08 Aligned_cols=158 Identities=11% Similarity=0.129 Sum_probs=91.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEc----Ce--e--cC-----CCccccccCCCCCCCEEEEEEecccccc
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQKLLAT----GR--P--LL-----DTKQILDYPQIKEGTKLNLVVKRALKES 79 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~----G~--~--L~-----d~~tL~~~~~i~~~s~i~l~~~~~~~~~ 79 (252)
..+.|....|+.+||+.|++.+|+|+++|||..- ++ . +. .+.++.++ . ..++.+.+.+.......
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~-~-~~~~~~~lflE~~~~~~ 115 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIEL-S-DNENPWTIFLETVDPEL 115 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHH-H-TSCSSEEEEEEECCHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHH-h-ccCCceEEEEEeccccc
Confidence 3678999999999999999999999999998532 11 1 11 12244443 1 22333444443211110
Q ss_pred cccccCCCCcchhhhhHHHHHHHhhccccccccce--eeeecCCcccHHHHHHHhhcccCCCCCCeEEEEc------Cee
Q psy1973 80 SQSVAGGSNVTILRDASYKFLRKYFTETQSNKIAD--EFIKVNSEMSILELKNKINEALKIPVSDQKLLAT------GRP 151 (252)
Q Consensus 80 ~~~~~~~~~~~~l~~~m~i~vk~~~~~~~~g~~~~--~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------G~~ 151 (252)
......-++ ......+-+|+|.+... .+.+. -.+-|+.+.+|.++-..|.+..|+|++.--.+|. ...
T Consensus 116 ~~~~~~l~~-~~~~~~iLlFlK~yDp~---~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~ 191 (530)
T 2ylm_A 116 AASGATLPK-FDKDHDVMLFLKMYDPK---TRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTER 191 (530)
T ss_dssp HTTTCCCCC-CCTTTEEEEEEEEEETT---TTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEE
T ss_pred CCccccCCC-CCCCCcEEEEEEeeCCC---CCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeE
Confidence 000000000 00112345566655322 12111 2467788999999999999999999987666664 223
Q ss_pred cC-CCCCcccc-cCCCCCCEEEEEEec
Q psy1973 152 LL-DTKQILDY-PQIKEGTKLNLVVKR 176 (252)
Q Consensus 152 L~-d~~tL~~y-~~i~~gs~l~l~~~~ 176 (252)
|. ...|+.+. ..+.+|+.|-.-...
T Consensus 192 l~~~~~t~~~~~~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 192 IQDYDVSLDKALDELMDGDIIVFQKDD 218 (530)
T ss_dssp CCCSSSBHHHHSTTCCTTEEEEEEECC
T ss_pred cccccccHHHHHhcccCCCEEEEEecC
Confidence 55 34566554 248899998665543
No 289
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=62.72 E-value=9.9 Score=26.92 Aligned_cols=60 Identities=8% Similarity=0.190 Sum_probs=41.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCC-----------eEEEEcCe-ecC------CCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVSD-----------QKLLATGR-PLL------DTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-----------q~L~~~G~-~L~------d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...++|+++.|+.+|-+.+.+.-.+.-.. ..|+..+- .|+ =+++|.++ |+.+|..|++.-
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eL-gl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKEL-GLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGG-TCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHh-CCCCCCEEEEEC
Confidence 35689999999999999999964433322 33443331 222 15789999 999999988853
No 290
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=62.22 E-value=6.8 Score=37.47 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=40.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCe-ecCCCccccc
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR-PLLDTKQILD 58 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~-~L~d~~tL~~ 58 (252)
.++...+.+.++.|+.+++..|++.+|++++.|.+++.+. .++.......
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~ 370 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQ 370 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGG
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhh
Confidence 3455678999999999999999999999999999987654 5555555554
No 291
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=61.45 E-value=18 Score=22.91 Aligned_cols=52 Identities=12% Similarity=0.260 Sum_probs=37.2
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++ ...||.+|.+.+ +++.....+..+|+....+. -.+. -+++|+.|.++-
T Consensus 8 ~~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~-~L~dgD~v~i~~ 59 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDR-PLRDGDVVEVVA 59 (64)
T ss_dssp EECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCC-CCCTTCEEEEEE
T ss_pred EEEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCc-CCCCCCEEEEEe
Confidence 4556 678999999877 45566666778888765443 3345 599999998874
No 292
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=60.25 E-value=12 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=25.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIP 37 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~ 37 (252)
+..+.+-|+++.+..+|..+|..+.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 5568999999999999999999999876
No 293
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=58.09 E-value=27 Score=22.94 Aligned_cols=54 Identities=6% Similarity=0.034 Sum_probs=36.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALK-----IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~g-----i~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...++ ....||.+|.+.+..+.. ++.....+..||+.... +. -+++|+.|.+..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~-~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DH-PLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TC-BCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CC-CCCCCCEEEEeC
Confidence 44555 567899999999876531 23334467788887642 45 588999988753
No 294
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.44 E-value=26 Score=24.38 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCeEEEE--cCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 21 MSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 21 ~TV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.+..+|+.+...+++++...-+|+. +|..++|+.-+..+ +..|+.+++.+
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL----p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL----GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS----CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC----CCCCEEEEEcC
Confidence 4799999999999999755566654 69899888777777 46677777764
No 295
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=57.27 E-value=21 Score=25.31 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=32.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVS 39 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~ 39 (252)
|.|-..+|....+.|++++|+.++-+.+..+.++..+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 4556678999999999999999999999999987643
No 296
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=55.94 E-value=20 Score=25.43 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhCCCCC--CeEEE--EcCeecCCCccccccCCCCCCCEEEEEEec
Q psy1973 21 MSILELKNKINEALKIPVS--DQKLL--ATGRPLLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 21 ~TV~~lK~~I~~~~gi~~~--~q~L~--~~G~~L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
.+..+|+.+...+++++.. .-+|+ .+|..++|+.-+..+ +..|+.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL----p~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL----PSNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS----CSCCEEEEECS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC----CCCCEEEEEcC
Confidence 4799999999999999753 23443 479999888877766 34555555653
No 297
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=55.29 E-value=20 Score=23.35 Aligned_cols=54 Identities=6% Similarity=0.148 Sum_probs=37.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIPVSDQ--KLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q--~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...+++....||.+|.+.+.....- .... .+..||+....+ . -+++|+.|.+..
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~~-----~-~L~~gD~V~i~p 72 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQKS-----D-FIQPNDTVALIP 72 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECTT-----S-EECTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCCC-----C-CcCCCCEEEEEC
Confidence 4566777788999999998877420 1223 677889877543 4 578899987753
No 298
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=55.02 E-value=11 Score=25.20 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHHHH
Q psy1973 191 VTILRDASYKFLRKYFTETQSNKIADEF 218 (252)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (252)
.+...+.|.++..++|..+++.++|+..
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~ 53 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAA 53 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4556889999999999999999988864
No 299
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=54.80 E-value=32 Score=22.55 Aligned_cols=53 Identities=6% Similarity=0.086 Sum_probs=36.6
Q ss_pred eeeecCCcccHHHHHHHhhcccC-----CCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALK-----IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~g-----ip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..++ ....||.+|.+.+..... ++.....+..+|+... .+. -+++|+.|.++-
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~-~l~~gD~V~i~P 76 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDH-PLTDGDEVAFFP 76 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTC-BCCTTCEEEEEC
T ss_pred EEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCC-CCCCCCEEEEeC
Confidence 3555 567899999999876532 2233456778888764 256 599999998863
No 300
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=53.69 E-value=37 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=34.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEEcCee
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQ-KLLATGRP 49 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q-~L~~~G~~ 49 (252)
...+.|.|++.+|=.++|+.|+..+++.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 36799999999999999999999999998775 45677764
No 301
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=53.63 E-value=40 Score=21.87 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=36.7
Q ss_pred eeecCCcccHHHHHHHhhcccCCCC--CCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPV--SDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++ ...||.+|.+.+....++.. ....+.-+|+...+ .+. -+++|+.|.++-
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~-~l~~gDeV~i~P 69 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNT-PLKDGDVISLLP 69 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTC-CCCTTCEEEEEC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCc-CCCCCCEEEEEC
Confidence 3445 57899999999987654432 44556677876543 356 699999998863
No 302
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=53.20 E-value=14 Score=23.60 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=37.6
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....||.+|.+.+ +++.....+..+|....... ..+. -+++|+.|.++-
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~-~L~~gD~v~i~~ 61 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQH-IVQDGDQILLFQ 61 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTC-CCCTTEEECEEE
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCc-CCCCCCEEEEEe
Confidence 55667788999999887 45666667778888765422 2345 588999988764
No 303
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=52.78 E-value=49 Score=22.13 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=38.5
Q ss_pred eeeecCCcccHHHHHHHhhcccC-CC----------CCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALK-IP----------VSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~g-ip----------~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
..+++....||.+|.+.+..... +. -....+.-+|+.... ++ -+++|+.|.++-
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~-~l~~gDeV~i~P 84 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GE-ATAAGDELALFP 84 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TS-BCCTTCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----Cc-ccCCCCEEEEEC
Confidence 47788778899999999977642 10 012466678877654 66 699999998863
No 304
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=49.75 E-value=33 Score=25.08 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=40.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEEcCeecCCCccccccC--CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQ-KLLATGRPLLDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q-~L~~~G~~L~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+.++++++- -|+.++.....+.+++++= .-..+..|+|...
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 4578999999999999999999998764 4455776445566554320 1123446666655
No 305
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=48.79 E-value=62 Score=22.15 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=47.6
Q ss_pred CEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHh----CCCCCC-eE---EEE-cCeecCCCccccccCCCCCCCEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVN-SEMSILELKNKINEAL----KIPVSD-QK---LLA-TGRPLLDTKQILDYPQIKEGTKLNL 70 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~-~~~TV~~lK~~I~~~~----gi~~~~-q~---L~~-~G~~L~d~~tL~~~~~i~~~s~i~l 70 (252)
|+|+|.. ++..+.+... ...||.+|-++--.++ +-.++. .. |-+ +|-.|+.+..|.+. +.+++.|.-
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV--ldD~e~i~A 79 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV--ADDKDRLVA 79 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH--SCTTEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh--ccCcceEEE
Confidence 8899987 5666777774 4569999877665543 332322 22 234 67789989999988 777877766
Q ss_pred EEe
Q psy1973 71 VVK 73 (252)
Q Consensus 71 ~~~ 73 (252)
...
T Consensus 80 ~~~ 82 (85)
T 2ns5_A 80 VFD 82 (85)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 306
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=48.05 E-value=29 Score=25.76 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=42.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-EcCeec-CCCccccccC--CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLL-ATGRPL-LDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~-~~G~~L-~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+.++++++--++ |.+..+ ..+.+++++= .-.++..+++...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 4578999999999999999999999876655 766555 4455554320 1123557777765
No 307
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=47.72 E-value=59 Score=21.60 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=37.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 14 FLDVNSEMSILELKNKINEALK------I-----PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~g------i-----~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.++++...||.+|.+.+..+.. + ......+..||+......- .+. -+++|+.|.+..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~-~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDT-EIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSC-BCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCc-CCCCCCEEEEeC
Confidence 3466667899999999987742 1 0133467788876653222 344 488999988753
No 308
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=47.19 E-value=66 Score=22.04 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=37.3
Q ss_pred eeeecCCcccHHHHHHHhhcccC-C----------CCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALK-I----------PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..+++....||.+|.+.+..... + ......+..+|+.... ++ -+++|+.|.++
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~-~L~dGDeV~i~ 92 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE-ELKDGDVVGVF 92 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC-BCCTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC-CCCCCCEEEEE
Confidence 36777778899999999876531 1 1233456678876642 67 69999998876
No 309
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=46.10 E-value=36 Score=22.03 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=36.9
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCe--EEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQ--KLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q--~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
..+++....||.+|.+.+.....- .... .+..+|+.... +. -+++|+.|.++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~-~L~~gD~V~i~ 71 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SD-FIQPNDTVALI 71 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TS-EECTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CC-CcCCCCEEEEE
Confidence 367777788999999998765310 1223 67788887764 35 58999998876
No 310
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=45.59 E-value=52 Score=22.60 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.9
Q ss_pred EEEEeCCCcE-EEEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q psy1973 3 ISVKVLQGQE-IFLDVN-SEMSILELKNKINEALKIPVSDQKL 43 (252)
Q Consensus 3 i~Vk~~~g~~-~~~~v~-~~~TV~~lK~~I~~~~gi~~~~q~L 43 (252)
|+-|..+.+. .++.++ ...+|.+||+.|..+.++-..+.-|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 5566666654 456665 4789999999999998876555555
No 311
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=44.56 E-value=72 Score=21.71 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=48.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-CC--C--CCCeEEEEcCee--cCCCccccccCCCCCCCEEEEEE
Q psy1973 13 IFLDVNSEMSILELKNKINEAL-KI--P--VSDQKLLATGRP--LLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~-gi--~--~~~q~L~~~G~~--L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.-+.|+..+|+.++-+++.... |. . |.-.+..++|.. |.++.++++- ||++-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaea-Gl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAES-GLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHH-CCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeecc-CCCcceEEEEEE
Confidence 4568999999999999998863 43 2 235678899987 9999999999 999999988765
No 312
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=44.00 E-value=7 Score=28.26 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=39.3
Q ss_pred CEEEEEeCCC------cEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEE-EcC--e------ecCCCccc-----
Q psy1973 1 MKISVKVLQG------QEIFLDVNS----EMSILELKNKINEALKIPVSDQKLL-ATG--R------PLLDTKQI----- 56 (252)
Q Consensus 1 M~i~Vk~~~g------~~~~~~v~~----~~TV~~lK~~I~~~~gi~~~~q~L~-~~G--~------~L~d~~tL----- 56 (252)
|+|+|+...| +...++++. ..||.+|-..+.+.+ +..+-.|+ -+| . .|-|+...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 5677777653 444566663 249999998888875 22222332 123 1 23233222
Q ss_pred cccCCCCCCCEEEEEE
Q psy1973 57 LDYPQIKEGTKLNLVV 72 (252)
Q Consensus 57 ~~~~~i~~~s~i~l~~ 72 (252)
.+| -+++|+.|.+..
T Consensus 83 ldt-~L~dgD~V~fis 97 (110)
T 2k9x_A 83 MDY-VLNDGDTVEFIS 97 (110)
T ss_dssp SCC-CCCSSCEEEEEE
T ss_pred ccc-CCCCcCEEEEeC
Confidence 346 699999977643
No 313
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=43.94 E-value=33 Score=31.62 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEEc
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV--SDQKLLAT 46 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~--~~q~L~~~ 46 (252)
|.+.|..++|....+.+++..|+.+|-+.|..+.|+.. +-.-|++.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 35788899999999999999999999999999999975 33455543
No 314
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=43.12 E-value=14 Score=24.42 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=34.7
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~ 173 (252)
.+++....||.+|.+.+. ++.....+..+|+....+ + -+++|+.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~-~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----D-EVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----S-CCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----C-CcCCCCEEEEE
Confidence 566677889999988764 566666778889887654 5 57777776553
No 315
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=43.10 E-value=12 Score=21.23 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q psy1973 194 LRDASYKFLRKYFTETQSNKIADEFIKEFNK 224 (252)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~ 224 (252)
..+.+..+..++|+..++.++++....+.++
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~ 34 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDV 34 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHH
Confidence 4568888999999999998888765444443
No 316
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=42.27 E-value=37 Score=25.01 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=40.1
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-cCeecCCCccccccC--CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+..+++++--++| ++.....+.+++++= .-.++..|++...
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 45789999999999999999999987754444 554334555554330 1123556776665
No 317
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=42.02 E-value=52 Score=22.81 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=33.8
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEEcCee
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQ-KLLATGRP 49 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q-~L~~~G~~ 49 (252)
.+.+.|.|++.+|=.++|+.|+..+++.+..- .+...|+.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 36799999999999999999999999998665 45667764
No 318
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.66 E-value=72 Score=21.15 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=36.9
Q ss_pred eeecCCcccHHHHHHHhhcccC------C-----CCCCeEEEEcCeecCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALK------I-----PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~g------i-----p~~~q~L~~~G~~L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
.+++....||.+|.+.+..... + ......+..+|+......- .++ -+++|+.|.++-
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~-~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDT-EIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSC-BCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCc-CCCCCCEEEEeC
Confidence 3445556899999999876631 1 1134567788876653322 345 499999998863
No 319
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.65 E-value=18 Score=23.34 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=25.0
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy1973 191 VTILRDASYKFLRKYFTETQSNKIADEFIK 220 (252)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 220 (252)
.+...+.+..+..++|+..+|.++++.--.
T Consensus 16 s~se~e~V~~LvsMGFs~~qA~kALKat~~ 45 (63)
T 1wgn_A 16 SPSERQCVETVVNMGYSYECVLRAMKKKGE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHCS
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 356678999999999999999999987443
No 320
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=39.93 E-value=73 Score=21.36 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHhh
Q psy1973 193 ILRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDLEALASSY 241 (252)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~~ 241 (252)
.+...+...+..|-....-...++.|.++. ..+|+.+|+..+++.+
T Consensus 18 ~~~~~l~~kl~~~~ks~~y~~f~~~lir~l---~~~L~~~dikkv~s~l 63 (80)
T 3bpj_A 18 EFGKLLKDKITQYEKSLYYASFLEVLVRDV---CISLEIDDLKKITNSL 63 (80)
T ss_dssp HHHHHHHHHHGGGTTSTTHHHHHHHHHHHH---HTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHH---HccCCHHHHHHHHHHH
Confidence 345556555655554445556778887776 8889999999988765
No 321
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=39.65 E-value=50 Score=24.01 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=39.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-cCeecCCCccccccC--CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+.++++++--++| ++.....+.+++++= .-.++..|++...
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 45689999999999999999999987654444 554334455554320 1123446666554
No 322
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.72 E-value=25 Score=20.31 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy1973 195 RDASYKFLRKYFTETQSNKIADEFIKEFN 223 (252)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~k~~~ 223 (252)
.+.+.++..++|+.+++.++++....+.+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e 33 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLE 33 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHH
Confidence 46789999999999999888887543333
No 323
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=38.64 E-value=42 Score=22.94 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQK 42 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~ 42 (252)
.+.+.|.|++..|=.++|+.++..+++.+..-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 467899999999999999999999999886554
No 324
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=38.58 E-value=42 Score=24.00 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=32.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-cCeecCCCccccc
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILD 58 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~ 58 (252)
.+-|+.+.||++|...|..+.++++++-.++| ++.....+.++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 45788899999999999999999987654444 4443344555543
No 325
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.57 E-value=42 Score=31.84 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=38.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEE
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPV-SDQKLLA 45 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~-~~q~L~~ 45 (252)
|.+.|..++|....+.|++..|+.++-..|..+.|+.. .-.-|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45788999999999999999999999999999999864 3345655
No 326
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=37.61 E-value=30 Score=23.20 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=23.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCC
Q psy1973 12 EIFLDVNSEMSILELKNKINEALKIP 37 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~~~gi~ 37 (252)
.+.+-|+++.+..+|..+|..++++.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57889999999999999999999875
No 327
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=36.46 E-value=91 Score=21.81 Aligned_cols=58 Identities=10% Similarity=0.279 Sum_probs=41.2
Q ss_pred eeecCCcccHHHHHHHhhcccCCCCC-----------CeEEEEcC-eecCC------CCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEALKIPVS-----------DQKLLATG-RPLLD------TKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~gip~~-----------~q~L~~~G-~~L~d------~~tL~~y~~i~~gs~l~l~~ 174 (252)
.++++++.|..++-+.+.+...+... ...|++.+ ..|+. +++|.+. |+.+|..|++.-
T Consensus 8 ~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eL-gl~~g~ei~VtD 83 (98)
T 1y8x_B 8 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKEL-GLVDGQELAVAD 83 (98)
T ss_dssp CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGG-TCCTTCEEEEEC
T ss_pred EEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHh-CCCCCCEEEEEC
Confidence 78999999999999999885433211 34455544 12332 3579999 999999998853
No 328
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=36.13 E-value=13 Score=25.53 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=25.8
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEEE
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLA 147 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 147 (252)
+.+.+..+.+..+|+.+|..+..+ +...+++
T Consensus 24 iAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ 54 (85)
T 1ip9_A 24 FALMLKGDTTYKELRSKIAPRIDT--DNFKLQT 54 (85)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTS--SCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc--cceEEEE
Confidence 699999999999999999999888 3444443
No 329
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=36.05 E-value=89 Score=21.26 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=48.1
Q ss_pred eeecCCcccHHHHHHHhhccc-CCC----CCCeEEEEcCee--cCCCCCcccccCCCCCCEEEEEE
Q psy1973 116 FIKVNSEMSILELKNKINEAL-KIP----VSDQKLLATGRP--LLDTKQILDYPQIKEGTKLNLVV 174 (252)
Q Consensus 116 ~i~v~~~~tV~~lK~~i~~~~-gip----~~~q~L~~~G~~--L~d~~tL~~y~~i~~gs~l~l~~ 174 (252)
-+.|+..+|+.++-++++... |.. +.-.+..++|.. +..+.++++. ||++-..|.+..
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaea-Gl~Pme~vev~~ 82 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAES-GLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHH-CCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeecc-CCCcceEEEEEE
Confidence 678889999999999987653 431 346788899998 9999999999 999999998875
No 330
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=35.92 E-value=1e+02 Score=20.94 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=48.5
Q ss_pred eeeecCCcccHHHHHHHhhccc-C--C---CCCCeEEEEcC--eecCCCCCcccccCCCCCCEEEEEEe
Q psy1973 115 EFIKVNSEMSILELKNKINEAL-K--I---PVSDQKLLATG--RPLLDTKQILDYPQIKEGTKLNLVVK 175 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~-g--i---p~~~q~L~~~G--~~L~d~~tL~~y~~i~~gs~l~l~~~ 175 (252)
.-+.|+..+|+.++-++++... | + |..-.+..++| ..+..+.|+++. ||.+-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~-gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDA-GLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGS-CCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeecc-CCCCceEEEEEEc
Confidence 3678999999999999997553 3 2 22357778999 899999999999 9999999987653
No 331
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.27 E-value=84 Score=22.32 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=47.1
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCCCCeEEE---EcCee--cCCCC-CcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLL---ATGRP--LLDTK-QILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~--L~d~~-tL~~y~~i~~gs~l~l~~~~ 176 (252)
+++.+..+.|+.+++..++++.+...+.+.|+ ++|.. |+++. .+.. .+.-+..|++..|-
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~t--sL~~NgRLfvc~kd 87 (104)
T 1wgy_A 22 VSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISK--SLEASGRIYVYRKD 87 (104)
T ss_dssp EEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCC--SSCSSCEEEEEECC
T ss_pred EEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEe--eccccceEEEeehH
Confidence 58888899999999999999999877778886 46654 45554 4444 48889999999885
No 332
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=35.12 E-value=49 Score=23.95 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=40.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-cCeecCCCccccccC--CCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDYP--QIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~~--~i~~~s~i~l~~~ 73 (252)
.+-|+.+.||++|...|..+.++++++-.++| ++.....+.+++++= .-..+..|++...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 45688899999999999999999987754445 444334455554330 1123567777765
No 333
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=34.33 E-value=56 Score=22.52 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=40.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-EcCeec-CCCcccc----ccCCCCCCCEEEEEEe
Q psy1973 14 FLDVNSEMSILELKNKINEALKIPVSDQKLL-ATGRPL-LDTKQIL----DYPQIKEGTKLNLVVK 73 (252)
Q Consensus 14 ~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~-~~G~~L-~d~~tL~----~~~~i~~~s~i~l~~~ 73 (252)
.+-|+.+.|++++...|.++.++++++--++ .++..+ ..+.+++ .| + .+..+.+...
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~-k--~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECF-G--SDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHH-C--BTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHh-C--CCCEEEEEEe
Confidence 5788999999999999999999988765444 455443 3344543 34 4 4567776654
No 334
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=34.24 E-value=1.1e+02 Score=20.79 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=48.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--CC--CC-CeEEEEcC--eecCCCccccccCCCCCCCEEEEEEe
Q psy1973 13 IFLDVNSEMSILELKNKINEAL-K--IP--VS-DQKLLATG--RPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~-g--i~--~~-~q~L~~~G--~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.-+.|+..+|+.++-++++... | ++ +. -.+..++| ..+..+.|+++- ||.+-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~-gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDA-GLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGS-CCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeecc-CCCCceEEEEEEc
Confidence 4568999999999999998763 3 32 22 35677899 889999999999 9999999888764
No 335
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=33.92 E-value=81 Score=22.57 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=43.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--------CCCCCeEEEE-c--Ce--ecCC-CccccccCCCCCCCEE
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALK--------IPVSDQKLLA-T--GR--PLLD-TKQILDYPQIKEGTKL 68 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~g--------i~~~~q~L~~-~--G~--~L~d-~~tL~~~~~i~~~s~i 68 (252)
|.+=..+|-.+.++++.+.|+.++|..+-++-+ -.++.-.+.. + |. .+.| ++.|.++ ... -..+
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv-~pf-~piL 99 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDL-RLF-QPFL 99 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGS-CBS-SSEE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEec-ccc-ceEE
Confidence 334456788899999999999999999877622 2334444432 2 33 4644 5888888 554 3344
Q ss_pred EEE
Q psy1973 69 NLV 71 (252)
Q Consensus 69 ~l~ 71 (252)
.++
T Consensus 100 klv 102 (108)
T 2v1y_A 100 KVI 102 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 336
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.61 E-value=96 Score=21.47 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.7
Q ss_pred cccHHHHHHHhhcccCCCCCCeEEEE--cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 122 EMSILELKNKINEALKIPVSDQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
-.+..+|+.+...+++++...-+|+. .|.+++|+.-+..+ +..++.+++.+
T Consensus 27 A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL----p~nT~lmvL~~ 79 (91)
T 2eel_A 27 ASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL----GDNTHFMILEK 79 (91)
T ss_dssp ESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS----CSSEEEEEEET
T ss_pred cCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC----CCCCEEEEEcC
Confidence 45899999999999999866677765 58888887666666 45666666665
No 337
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=33.45 E-value=14 Score=26.65 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=47.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEEcC---eecCCCccccccCCCCCCCEEEEEE
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALKIPV--SDQKLLATG---RPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~gi~~--~~q~L~~~G---~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
...++.|..+.-|+-+.-++-++.+++. ++.-|..-- +.|.-..||..| ||+.++.+++..
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~-giqADa~L~ftp 101 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKY-GIQADAKLQFTP 101 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHH-TCCTTCBBCBBC
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhh-ceeccccceecC
Confidence 5578889988999999999999887765 334454432 367889999999 999998877643
No 338
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=32.86 E-value=1.1e+02 Score=21.14 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-ccCChHHHHHHHHhhhc
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADEFIKEFNKSI-STLSLDDLEALASSYLM 243 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~-~~lsldd~er~a~~~~~ 243 (252)
+.....+..++..-....++....+.++.-|+.++ ..+.+++-..+|..+|.
T Consensus 28 D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFee~~p~e~c~~iA~kLL~ 80 (90)
T 1u84_A 28 DAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFDEPIPFPHCLKLARRLLE 80 (90)
T ss_dssp GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 33444555555443333467778888888888888 77899999999999987
No 339
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.24 E-value=65 Score=22.04 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q psy1973 10 GQEIFLDVNSEMSILELKNKINEALKIPVSDQK 42 (252)
Q Consensus 10 g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~ 42 (252)
.+++.|.|+...+=.++|+.++..+++.+..-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 467899999999999999999999999886554
No 340
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=31.77 E-value=66 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=31.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcCe
Q psy1973 13 IFLDVNSEMSILELKNKINEALKIPVSDQK-LLATGR 48 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G~ 48 (252)
+.|.|++.+|=.++|+.|+..+++.+..-+ +...|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 899999999999999999999999987664 455664
No 341
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=31.68 E-value=1.1e+02 Score=20.27 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=28.0
Q ss_pred CcchhHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q psy1973 190 NVTILRDASYKFLRK-YFTETQSNKIADEFIKEFNKS 225 (252)
Q Consensus 190 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~k~~~~~ 225 (252)
..+.+|+.+..++.. --.+..|.++..-|++.|++.
T Consensus 38 ~TeeFW~DL~gFL~qRlkDe~~A~~l~siFk~AW~ss 74 (75)
T 2lo0_A 38 ATEAFWDDLQGFLEQRLKDYDEANKLRVLFKEAWRSS 74 (75)
T ss_dssp TSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Confidence 468899999999844 335666778888999999864
No 342
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=31.00 E-value=1e+02 Score=19.47 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccCChHHHHHHHHhh
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADEFIKEFNKSISTLSLDDLEALASSY 241 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~lsldd~er~a~~~ 241 (252)
+...+.+.-+..-+|+..++.++++.+.+. -...+.+++=|.|=..
T Consensus 15 ~~~~ea~~AL~aLGY~~~ea~kav~~v~~~----~~~~~~e~lIr~ALk~ 60 (62)
T 1ixs_A 15 EAAEEAVMALAALGFKEAQARAVVLDLLAQ----NPKARAQDLIKEALKR 60 (62)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHTT
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHH
Confidence 445678888889999999999999987432 1245777777766543
No 343
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=30.47 E-value=84 Score=21.39 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhcCCh------HHHHHHHHHHHHH----------HHH---hcccCChHHHHHHHHhhhc
Q psy1973 193 ILRDASYKFLRKYFTE------TQSNKIADEFIKE----------FNK---SISTLSLDDLEALASSYLM 243 (252)
Q Consensus 193 ~~~~~~~~~l~~~~~~------~~~~~~~~~~~k~----------~~~---~~~~lsldd~er~a~~~~~ 243 (252)
...+.+.+++..+|.+ .||.+++.++++= +++ --..+..+|+||++--+|.
T Consensus 13 i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQLlL 82 (84)
T 4dra_E 13 FRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLL 82 (84)
T ss_dssp CCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhc
Confidence 3467888898888873 2333333333322 122 2456899999999876653
No 344
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=30.44 E-value=73 Score=21.91 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=31.8
Q ss_pred ccccceeeeecCCcccHHHHHHHhhcccCCCCCC-eEEEEcCe
Q psy1973 109 SNKIADEFIKVNSEMSILELKNKINEALKIPVSD-QKLLATGR 150 (252)
Q Consensus 109 ~g~~~~~~i~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~G~ 150 (252)
.|.+ ..+.++++.+..+|.+++.+..+++..+ ..+.|...
T Consensus 14 ~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 14 RGDI--MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCE--EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 3555 3788889999999999999999987544 67777765
No 345
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=30.36 E-value=1.2e+02 Score=21.08 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=39.2
Q ss_pred EEEEEecCCCCHHHHHHHHHH--H-hCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEE
Q psy1973 12 EIFLDVNSEMSILELKNKINE--A-LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 72 (252)
Q Consensus 12 ~~~~~v~~~~TV~~lK~~I~~--~-~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~ 72 (252)
.+.+++..+.||.++-+...- . ..|......+..+|+... .++ -+++|+.|-+..
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~-~L~dGDRVEIyr 84 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTD-VLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTC-BCCTTCEEEECC
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCc-cCCCCCEEEEEe
Confidence 466788999999998888643 2 244555567878888775 444 578899988754
No 346
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=29.21 E-value=96 Score=22.63 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---EcCee--cCCCccccccCCCCCCCEEEEEEec
Q psy1973 9 QGQEIFLDVNSEMSILELKNKINEALKIPVS------DQKLL---ATGRP--LLDTKQILDYPQIKEGTKLNLVVKR 74 (252)
Q Consensus 9 ~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~------~q~L~---~~G~~--L~d~~tL~~~~~i~~~s~i~l~~~~ 74 (252)
+...+++.+..+.|+.+++..+..+.+...+ .+.|+ ++|.. |+++..--.- .+.-+..|+++.+.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~t-sL~~NgRLfvc~kd 93 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFT-ALGINSHLFACTRD 93 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHH-HSCSSEEEEEECTT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEe-eccccceEEEeehH
Confidence 3445678888999999999999999987554 67774 67764 4443332222 35567788888763
No 347
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=28.94 E-value=78 Score=19.75 Aligned_cols=27 Identities=7% Similarity=-0.007 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHhcCChHHHHHHHHH
Q psy1973 191 VTILRDASYKFLRKYFTETQSNKIADE 217 (252)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (252)
.++..+.|.+++.++|+.+++.+++..
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHH
Confidence 356778999999999999999888765
No 348
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=27.73 E-value=29 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhCCCCC--CeEEE--EcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 21 MSILELKNKINEALKIPVS--DQKLL--ATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 21 ~TV~~lK~~I~~~~gi~~~--~q~L~--~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
.+..+|+.+...+++++.. .-+|+ -+|..++|+.-+..+ +..++.+++.
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL----p~nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL----PSNTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS----CSSCBEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC----CCCCEEEEEC
Confidence 5899999999999999653 44554 469899888777777 3445555555
No 349
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=27.57 E-value=59 Score=19.75 Aligned_cols=31 Identities=3% Similarity=-0.110 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHhcC-ChHHHHHHHHHHHHHH
Q psy1973 192 TILRDASYKFLRKYF-TETQSNKIADEFIKEF 222 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~k~~ 222 (252)
......+..+..++| ....+.+++...--+.
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~ 41 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATGGDI 41 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCH
Confidence 446778999999999 6655567776543333
No 350
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=27.49 E-value=1.4e+02 Score=20.04 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCC------hHHHHHHHHHHHHHH----------H---HhcccCChHHHHHHHHhhhc
Q psy1973 194 LRDASYKFLRKYFT------ETQSNKIADEFIKEF----------N---KSISTLSLDDLEALASSYLM 243 (252)
Q Consensus 194 ~~~~~~~~l~~~~~------~~~~~~~~~~~~k~~----------~---~~~~~lsldd~er~a~~~~~ 243 (252)
..+.+.+++..+|. ..||.+++.++++=| + +-...+..+|+||+|--+|.
T Consensus 10 ~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqLlL 78 (81)
T 3b0b_C 10 RKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLL 78 (81)
T ss_dssp CHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHHHh
Confidence 34577777777777 455554444443221 1 23456889999999877664
No 351
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=27.33 E-value=1.3e+02 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=31.4
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD 40 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~ 40 (252)
|.|-..+|....+.|+++.|+.++-+.+..+.+++...
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 44445678888999999999999999999999986643
No 352
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.64 E-value=89 Score=18.62 Aligned_cols=26 Identities=0% Similarity=-0.064 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHH
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADE 217 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (252)
+...+.+..+..++|+..++.++++.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677899999999999998888875
No 353
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=25.28 E-value=1.4e+02 Score=24.97 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=38.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--Ec----CeecCCCccccc
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSD-QKLL--AT----GRPLLDTKQILD 58 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~-q~L~--~~----G~~L~d~~tL~~ 58 (252)
|.|-..+|....+.|+++.|+.+|-+.+..+.++.... ..|+ +. -+.|+|...+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 44555678889999999999999999999888765433 3332 21 245666655443
No 354
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=24.52 E-value=2e+02 Score=20.82 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=44.5
Q ss_pred EEEEecCCCCHHHHHHHHHHH-hCCCC-------CCeEEEEcCeec--CCCccccccCCCCCCCEEEEE
Q psy1973 13 IFLDVNSEMSILELKNKINEA-LKIPV-------SDQKLLATGRPL--LDTKQILDYPQIKEGTKLNLV 71 (252)
Q Consensus 13 ~~~~v~~~~TV~~lK~~I~~~-~gi~~-------~~q~L~~~G~~L--~d~~tL~~~~~i~~~s~i~l~ 71 (252)
+.+.++++.+.++|-+.+-.- ++..| +.-....+|++. +.+++|.+. |+..-|.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaen-G~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQ-GIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTT-TCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHc-CCCchheEEEe
Confidence 578899999999998876543 44433 334567899987 457999999 99998888765
No 355
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=24.29 E-value=49 Score=20.22 Aligned_cols=28 Identities=4% Similarity=-0.159 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q psy1973 192 TILRDASYKFLRKYF-TETQSNKIADEFI 219 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 219 (252)
....+.+..+..++| ....+..++...-
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~ 37 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATG 37 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 446678999999999 6665567776543
No 356
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.29 E-value=84 Score=21.81 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIP 37 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~ 37 (252)
+|++...+|....+++.++.|+.+.-.. .|++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~----~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD----AGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH----TTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH----cCCC
Confidence 6888888999999999999999875433 5666
No 357
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=23.95 E-value=66 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=22.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHH
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNK 29 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~ 29 (252)
.|.+.. +|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELTI-NGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHHH
Confidence 566654 899999999999999987654
No 358
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=23.62 E-value=73 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHHH
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKNK 29 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~~ 29 (252)
|.|.+.. +|+.+.++++++.||.++-..
T Consensus 10 m~i~~~i-ng~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISATI-NGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEEE-CCEEEEEecCCCCcHHHHHHh
Confidence 4566655 899999999999999987654
No 359
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=23.16 E-value=85 Score=19.35 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q psy1973 194 LRDASYKFLRKYFTETQSNKIADEFI 219 (252)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (252)
+.+.|.+++..+|+.+++.+++....
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~ 36 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQ 36 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 44899999999999999999887644
No 360
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=22.98 E-value=90 Score=22.18 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=50.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCe--ecCCCccccccCCCCCCCEEEEEEe
Q psy1973 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR--PLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 8 ~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~--~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
..++.+.+...+.-++.++-.-|-.++|+..++..+...|. +|+-...++.. +|..+.+...
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l----dgqrl~Le~~ 88 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV----ASQTLVLDTP 88 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS----SSSCEEECCC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh----cCcEEEEeeC
Confidence 56888888899999999999999999999988877766665 57777888877 6777766544
No 361
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=22.93 E-value=77 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCCHHHHHH
Q psy1973 1 MKISVKVLQGQEIFLDVNSEMSILELKN 28 (252)
Q Consensus 1 M~i~Vk~~~g~~~~~~v~~~~TV~~lK~ 28 (252)
|.|.+.. +|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~v-NG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLNL-NGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEEE-TTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEEE-CCEEEEEecCCCCCHHHHHH
Confidence 3567754 89999999999999998754
No 362
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=22.82 E-value=1.2e+02 Score=25.87 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHhcccCChHHHHHHHHhhhccccC
Q psy1973 222 FNKSISTLSLDDLEALASSYLMEEEC 247 (252)
Q Consensus 222 ~~~~~~~lsldd~er~a~~~~~~~~~ 247 (252)
|.+.+..++.+|+.+.|..++.++..
T Consensus 372 ~~~~i~~vt~~dv~~~a~~~l~~~~~ 397 (406)
T 3eoq_A 372 VKARVQRVTSREVNALLERGFLEKGL 397 (406)
T ss_dssp HHHHHHHCCHHHHHHHHHTTTTTSCE
T ss_pred HHHHHHhCCHHHHHHHHHHhcCcccE
Confidence 45577888999999999998876543
No 363
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.73 E-value=4.2e+02 Score=24.45 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=45.2
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCC-CCeEEEEcC-----eecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPV-SDQKLLATG-----RPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~G-----~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+.|++..|+.+|-..|+...|+.. +..-|.|.. ..|..++++.+. +++.+....+.+|.
T Consensus 16 ~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q-~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 16 LEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQ-DVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGS-CBCCCSSEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHh-cccCCCCeEEEEEE
Confidence 47888899999999999999999964 445566632 246677788888 77777766655553
No 364
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=22.34 E-value=97 Score=21.83 Aligned_cols=51 Identities=24% Similarity=0.184 Sum_probs=36.6
Q ss_pred cccHHHHHHHhhcccCCCCC--CeEEEE--cCeecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 122 EMSILELKNKINEALKIPVS--DQKLLA--TGRPLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 122 ~~tV~~lK~~i~~~~gip~~--~q~L~~--~G~~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
-.+..+|+.+...+++++.. ..+|+. .|..+.|+.-+... +..|+.+++.+
T Consensus 36 A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL----p~nT~lmvL~~ 90 (100)
T 1f2r_I 36 ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL----PSNTKFVALAC 90 (100)
T ss_dssp ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS----CSCCEEEEECS
T ss_pred cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC----CCCCEEEEEcC
Confidence 45899999999999999753 356653 69999888776666 34455555544
No 365
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.02 E-value=2e+02 Score=20.22 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCe
Q psy1973 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR 48 (252)
Q Consensus 3 i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~ 48 (252)
|.+.. .|.+..+.+.-..+..+|..++...+|-+. .|.|...
T Consensus 11 iKfE~-~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n~ 52 (103)
T 2cu1_A 11 VKFEH-RGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTNN 52 (103)
T ss_dssp EEEEE-TTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECSS
T ss_pred EEEEe-cCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEecc
Confidence 34433 678889999999999999999999999754 4666654
No 366
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=21.45 E-value=80 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHH
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNK 29 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~ 29 (252)
.|.+.. +|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVNV-NGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHHh
Confidence 466644 899999999999999987654
No 367
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=21.37 E-value=1.2e+02 Score=18.18 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH
Q psy1973 193 ILRDASYKFLRKYFTETQSNKIADEF 218 (252)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (252)
.+...|..++..+|+.+++.+++-.-
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46678899999999999998877553
No 368
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.35 E-value=1.3e+02 Score=19.97 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=41.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEcCeecCCCccccccCCCCCCCEEEEEEe
Q psy1973 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73 (252)
Q Consensus 2 ~i~Vk~~~g~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~~i~~~s~i~l~~~ 73 (252)
+|+|.+.+|.. ++++.+.|+.|+=..|....|-.. .--..+|+...- ++ -+++|+.|.+.-.
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~-~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DY-KVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TC-BCCTTCBEEEEEC
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----Cc-ccCCCCEEEEEcc
Confidence 57888888875 467788999999888866554221 112347765543 34 4778888887654
No 369
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=20.54 E-value=3.6e+02 Score=22.23 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=44.9
Q ss_pred eeeecCCcccHHHHHHHhhcccCCCC-CCeEEEE--cCe--ecCCCCCcccccCCCCCCEEEEEEec
Q psy1973 115 EFIKVNSEMSILELKNKINEALKIPV-SDQKLLA--TGR--PLLDTKQILDYPQIKEGTKLNLVVKR 176 (252)
Q Consensus 115 ~~i~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~--~G~--~L~d~~tL~~y~~i~~gs~l~l~~~~ 176 (252)
+.+.+++..|+.++-+.|....|+.. +..-|.| +|. .|..++++.+. +++.+....+..|.
T Consensus 34 ~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q-~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 34 MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDH-DVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGS-SCCCSSSEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHc-CCCCCCCEEEEEEE
Confidence 47888999999999999999999974 3444555 333 37778889998 77666655555543
No 370
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=20.45 E-value=1.2e+02 Score=23.20 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHHHH--HhcccCChHHHHHHH
Q psy1973 192 TILRDASYKFLRKYFTETQSNKIADEFIKEFN--KSISTLSLDDLEALA 238 (252)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~--~~~~~lsldd~er~a 238 (252)
++..-.++.+|...-+++.+..+..+|++.|- +.|...+.|+++.+-
T Consensus 30 dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i 78 (161)
T 4e9f_A 30 DPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELL 78 (161)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHH
T ss_pred ChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHh
Confidence 56777889999999999999999999999885 378889999997764
No 371
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.44 E-value=35 Score=21.84 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q psy1973 194 LRDASYKFLRKYFTETQSNKIADEF 218 (252)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (252)
-.+.+.++..++|...++.++++..
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~ 33 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDN 33 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3568899999999999888877653
No 372
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.39 E-value=1.1e+02 Score=23.33 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=30.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEEcC
Q psy1973 11 QEIFLDVNSEMSILELKNKINEALKIPVSDQK-LLATG 47 (252)
Q Consensus 11 ~~~~~~v~~~~TV~~lK~~I~~~~gi~~~~q~-L~~~G 47 (252)
+++.|.|+...+=.++|+.|+..+++.+..-+ +...|
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~ 131 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD 131 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC
Confidence 57899999999999999999999999887653 34443
Done!