RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1973
(252 letters)
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling
protein-metal binding protein COM; HET: TRE; 1.70A {Homo
sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A
2y5b_B
Length = 152
Score = 74.7 bits (183), Expect = 5e-17
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVN 120
KE T ++ R + G +T+ + S
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS------------------------ 96
Query: 121 SEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 97 --DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 148
Score = 37.7 bits (87), Expect = 0.001
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
++V +I +K KI + IP Q+L+ G+ L D + + DY KE T ++ R
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 177 ALKESSQSVAGGSNVTILRDAS 198
+ G +T+ + S
Sbjct: 75 GGMQIFVKTLTGKTITLEVEPS 96
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Length = 172
Score = 73.9 bits (181), Expect = 2e-16
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVN 120
KE T ++ R + G +T+ + S
Sbjct: 81 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS------------------------ 116
Query: 121 SEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 117 --DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 168
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 73.4 bits (180), Expect = 2e-16
Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL--ATGRPLLDTKQILD 58
++VK+L G E + ++S MS+ ELK +I + + + Q+L +G L D +
Sbjct: 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62
Query: 59 YPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIK 118
+ G+ + LVV ++ + S V + +
Sbjct: 63 Q-GLGPGSTVLLVVDKSDEPLSILVRNNKGRSST------------------------YE 97
Query: 119 VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V ++ LK +++ + L G+PL D + +Y +K + + + ++
Sbjct: 98 VRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLR 153
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae}
Length = 106
Score = 67.8 bits (166), Expect = 6e-15
Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ ++ K + +++ LD+ +ILE K K+ +++ S KL+ +G+ L D+K + +
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC- 60
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVT 90
+K+G ++ +V + ++ N +
Sbjct: 61 GLKDGDQVVFMVSQKKSTKTKVTERDPNSS 90
Score = 48.9 bits (117), Expect = 5e-08
Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+ + +ILE K K+ +++ S KL+ +G+ L D+K + + +K+G ++ +V +
Sbjct: 16 LDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC-GLKDGDQVVFMVSQ 74
Query: 177 ALKESSQSVAGGSNVT 192
++ N +
Sbjct: 75 KKSTKTKVTERDPNSS 90
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 81
Score = 66.6 bits (163), Expect = 9e-15
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+++VK LQG+E L V + + LK ++E L +PV Q+LL G+ L D K++ DY
Sbjct: 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY- 66
Query: 61 QIKEGTKLNLVVK 73
I +KLNLVVK
Sbjct: 67 SIGPNSKLNLVVK 79
Score = 48.4 bits (116), Expect = 5e-08
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V + + LK ++E L +PV Q+LL G+ L D K++ DY I +KLNLVVK
Sbjct: 22 LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNSKLNLVVK 79
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 66.1 bits (162), Expect = 1e-14
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
MK V+ L G L+V+ ++L +K KI + IPVS Q L+ G +L ++
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70
Query: 61 QIKEGTKLNLVVK 73
QI + + L V
Sbjct: 71 QIVPTSDIQLEVS 83
Score = 46.1 bits (110), Expect = 3e-07
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V+ ++L +K KI + IPVS Q L+ G +L ++ QI + + L V
Sbjct: 25 LEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon,
inhibitor, ubiqu acetylation, cytoplasm, isopeptide
bond, nucleus; 2.60A {Homo sapiens}
Length = 85
Score = 65.4 bits (160), Expect = 3e-14
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 62
Query: 61 QIKEGTKLNLVVK 73
I + L L++K
Sbjct: 63 NIHNHSALYLLLK 75
Score = 46.6 bits (111), Expect = 2e-07
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I + L L++K
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIHNHSALYLLLK 75
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL
conjugation pathway, ATP-binding, ligase, nucleotide-
binding, polymorphism; 2.85A {Homo sapiens} SCOP:
k.45.1.1 PDB: 3dbr_I 3dbl_I
Length = 88
Score = 64.7 bits (158), Expect = 5e-14
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 71
Query: 61 QIKEGTKLNLVVK 73
+I G+ L+LV++
Sbjct: 72 KILGGSVLHLVLR 84
Score = 46.2 bits (110), Expect = 3e-07
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I + + +K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV++
Sbjct: 27 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLR 84
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 64.3 bits (157), Expect = 6e-14
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 62
Query: 61 QIKEGTKLNLVVK 73
I++ + L L+++
Sbjct: 63 NIQKWSTLFLLLR 75
Score = 46.6 bits (111), Expect = 2e-07
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I++ + L L+++
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKWSTLFLLLR 75
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 66.4 bits (162), Expect = 7e-14
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M + ++ QE F V ++ E + + ++ K
Sbjct: 1 MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLV- 59
Query: 61 QIKEGTKLNLVVK 73
+ + V
Sbjct: 60 DYVQVRQPIFVAH 72
Score = 47.1 bits (112), Expect = 5e-07
Identities = 4/59 (6%), Positives = 12/59 (20%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V ++ E + + ++ K + + V
Sbjct: 15 EVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLV-DYVQVRQPIFVAH 72
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase,
deamidati bacterial effector, cell cycle-protein
binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Length = 88
Score = 64.3 bits (157), Expect = 7e-14
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 61 QIKEGTKLNLVVK 73
+I G+ L+LV+
Sbjct: 60 KILGGSVLHLVLA 72
Score = 45.0 bits (107), Expect = 9e-07
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I + + +K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLA 72
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis,
signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1
PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B
2nvu_I* 3dqv_A 1bt0_A
Length = 76
Score = 63.8 bits (156), Expect = 9e-14
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ + +K ++ E IP Q+L+ +G+ + D K DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY- 59
Query: 61 QIKEGTKLNLVVK 73
+I G+ L+LV+
Sbjct: 60 KILGGSVLHLVLA 72
Score = 44.5 bits (106), Expect = 8e-07
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I + + +K ++ E IP Q+L+ +G+ + D K DY +I G+ L+LV+
Sbjct: 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLA 72
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 63.1 bits (154), Expect = 2e-13
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQIL 57
M++++K LQ Q +D++ E ++ LK KI PV+ QKL+ G+ L D +
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYPQIKEGTKLNLVVKRALKESSQSVAGGSN 88
+Y +I E + ++V + S+ + A +
Sbjct: 61 EY-KIDEKNFVVVMVTKPKAVSTPAPATLEH 90
Score = 43.1 bits (102), Expect = 5e-06
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 117 IKVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
I ++ E ++ LK KI PV+ QKL+ G+ L D + +Y +I E + ++
Sbjct: 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVM 73
Query: 174 VKRALKESSQSVAGGSN 190
V + S+ + A +
Sbjct: 74 VTKPKAVSTPAPATLEH 90
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural
protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Length = 88
Score = 62.8 bits (153), Expect = 2e-13
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ +K L G+ +++ +I LK KI + IP Q+L+ G+ L D + + DY
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 68
Query: 61 QIKEGTKLNLVVK 73
I++ + L+LV++
Sbjct: 69 NIQKESTLHLVLR 81
Score = 45.0 bits (107), Expect = 8e-07
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+++ +I LK KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 24 VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 81
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 62.9 bits (153), Expect = 3e-13
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 60
Query: 61 QIKEGTKLNLVVK 73
I++ + L+LV++
Sbjct: 61 NIQKESTLHLVLR 73
Score = 45.1 bits (107), Expect = 1e-06
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 16 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 73
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding
protein, DNA excision repair, proteasomal degrad
polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U
1p1a_A
Length = 85
Score = 62.7 bits (153), Expect = 3e-13
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQIL 57
+ I++K LQ Q + + + ++ LK KI PV+ QKL+ G+ L D I
Sbjct: 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65
Query: 58 DYPQIKEGTKLNLVVKRA 75
DY +I E + ++V +
Sbjct: 66 DY-RIDEKNFVVVMVTKT 82
Score = 42.6 bits (101), Expect = 5e-06
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 117 IKVNSEMSILELKNKINEA---LKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
I++ + ++ LK KI PV+ QKL+ G+ L D I DY +I E + ++
Sbjct: 20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVM 78
Query: 174 VKRA 177
V +
Sbjct: 79 VTKT 82
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond,
metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B
2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A
2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A
1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Length = 76
Score = 61.5 bits (150), Expect = 5e-13
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 59
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 60 NIQRESTLHLVLR 72
Score = 43.8 bits (104), Expect = 2e-06
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I+ + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQRESTLHLVLR 72
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 62.0 bits (151), Expect = 5e-13
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK G +N IL LK +I + +P Q+L G+ L D + Y
Sbjct: 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY- 66
Query: 61 QIKEGTKLNLVVK 73
I++ L L K
Sbjct: 67 GIQDSDTLILSKK 79
Score = 44.7 bits (106), Expect = 1e-06
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+N IL LK +I + +P Q+L G+ L D + Y I++ L L K
Sbjct: 22 YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSKK 79
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome,
ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A
2zeq_A 2knb_A 1iyf_A
Length = 76
Score = 61.5 bits (150), Expect = 7e-13
Identities = 13/71 (18%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M + V+ ++V+S+ SIL+LK + + +P +++ G+ L + + +
Sbjct: 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC- 59
Query: 61 QIKEGTKLNLV 71
+++ + +++V
Sbjct: 60 DLEQQSIVHIV 70
Score = 44.2 bits (105), Expect = 1e-06
Identities = 11/57 (19%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
++V+S+ SIL+LK + + +P +++ G+ L + + + +++ + +++V
Sbjct: 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQSIVHIV 70
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 62.5 bits (152), Expect = 7e-13
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+I K L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY- 68
Query: 61 QIKEGTKLNLVVK 73
I+ + L+LV++
Sbjct: 69 NIQRESTLHLVLR 81
Score = 45.2 bits (107), Expect = 1e-06
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY I+ + L+LV++
Sbjct: 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY-NIQRESTLHLVLR 81
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3
protein, PF00240, structural GEN joint center for
structural genomics, JCSG; 1.80A {Homo sapiens} PDB:
1wx9_A
Length = 90
Score = 61.5 bits (150), Expect = 8e-13
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK L Q V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY- 64
Query: 61 QIKEGTKLNLVVKRALKESSQSVA 84
+ ++LV + + S A
Sbjct: 65 NVGGKV-IHLVERAPPQTHLPSGA 87
Score = 43.0 bits (102), Expect = 4e-06
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y + ++LV +
Sbjct: 20 FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NVGGKV-IHLVERA 77
Query: 177 ALKESSQSVA 186
+ S A
Sbjct: 78 PPQTHLPSGA 87
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 61.7 bits (150), Expect = 8e-13
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 59
Query: 61 QIKEGTKLNLVVK 73
I++ + L+LV++
Sbjct: 60 NIQKESTLHLVLR 72
Score = 44.0 bits (104), Expect = 3e-06
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 72
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling
proteins; 1.15A {Saccharomyces cerevisiae} SCOP:
d.15.1.1 PDB: 2bwe_S
Length = 77
Score = 61.1 bits (149), Expect = 9e-13
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 1 MKISVKVLQGQEIF-LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M +++ + GQ+ + ++V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y
Sbjct: 3 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62
Query: 60 PQIKEGTKLNLVVK 73
I++G ++LV
Sbjct: 63 -HIQDGHSVHLVKS 75
Score = 46.4 bits (111), Expect = 2e-07
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 105 TETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQI 164
++ +K + V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y I
Sbjct: 9 IKSGQDKWE---VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HI 64
Query: 165 KEGTKLNLVVK 175
++G ++LV
Sbjct: 65 QDGHSVHLVKS 75
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein
binding; 2.60A {Homo sapiens}
Length = 111
Score = 61.4 bits (149), Expect = 2e-12
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 94
Query: 61 QIKEGTKLNLVV 72
I++ + L+LV+
Sbjct: 95 NIQKESTLHLVL 106
Score = 43.7 bits (103), Expect = 4e-06
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
++V +I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV+
Sbjct: 50 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVL 106
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold,
GP78-binding, chaperone; 1.30A {Homo sapiens}
Length = 88
Score = 60.4 bits (147), Expect = 2e-12
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK L Q V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY- 76
Query: 61 QIKEGTKLNLVVK 73
+ ++LV +
Sbjct: 77 NVGGKV-IHLVER 88
Score = 43.4 bits (103), Expect = 3e-06
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y + ++LV +
Sbjct: 32 FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NVGGKV-IHLVER 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 63.2 bits (153), Expect = 2e-12
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M++ VK L+G+ + S+L+LK++I++ + + L+ G +T+ + D
Sbjct: 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDDV 60
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKF-LRKYFTETQSNKI 112
L+L + K+ + T R K ++ + K+
Sbjct: 61 TY----YLSLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKV 109
Score = 44.7 bits (105), Expect = 7e-06
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+ S+L+LK++I++ + + L+ G +T+ + D L+L +
Sbjct: 15 YTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDDVTY----YLSLKLLG 70
Query: 177 ALKESSQSVAGGSNVTILRDASYKF-LRKYFTETQSNKI 214
K+ + T R K ++ + K+
Sbjct: 71 GKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKV 109
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15,
structure, northeast structural genomics consortium,
protein structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 59.7 bits (145), Expect = 4e-12
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ I V+ +G+ +V ++ LK +++ + L G+PL D + +Y
Sbjct: 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY- 63
Query: 61 QIKEGTKLNLV 71
+K + + +
Sbjct: 64 GLKPLSTVFMN 74
Score = 42.8 bits (101), Expect = 6e-06
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+V ++ LK +++ + L G+PL D + +Y +K + + +
Sbjct: 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMN 74
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 59.8 bits (145), Expect = 6e-12
Identities = 14/73 (19%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++ +++ G+++ L V S ++ +K +++ A + Q+ +GRPL D + +
Sbjct: 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL- 82
Query: 61 QIKEGTKLNLVVK 73
+I + + ++V
Sbjct: 83 KIPKDYVVQVIVS 95
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+ V S ++ +K +++ A + Q+ +GRPL D + + +I + + ++V
Sbjct: 38 LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL-KIPKDYVVQVIVS 95
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 59.7 bits (145), Expect = 6e-12
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K++VK + +E F V +I +LK +I++ K L+ G+ L D +
Sbjct: 18 IKVTVKTPKDKEDF-SVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC- 75
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGSNVT 90
+++G ++LV+KR + +
Sbjct: 76 GVRDGLTVHLVIKRQHRAMGNECPASGPSS 105
Score = 47.4 bits (113), Expect = 2e-07
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
V +I +LK +I++ K L+ G+ L D + +++G ++LV+KR
Sbjct: 31 FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKR 89
Query: 177 ALKESSQSVAGGSNVT 192
+ +
Sbjct: 90 QHRAMGNECPASGPSS 105
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 96
Score = 59.3 bits (144), Expect = 7e-12
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++SVK Q F + ++ K +I++ L L+ TG+ L D +
Sbjct: 18 IRVSVKTPQDCHEF-FLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR- 75
Query: 61 QIKEGTKLNLVVKRALKESS 80
I +G+ +++VV+ SS
Sbjct: 76 GILDGSTVHVVVRSHSGPSS 95
Score = 47.8 bits (114), Expect = 9e-08
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+ ++ K +I++ L L+ TG+ L D + I +G+ +++VV+
Sbjct: 31 FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVVRS 89
Query: 177 ALKESS 182
SS
Sbjct: 90 HSGPSS 95
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 58.6 bits (142), Expect = 1e-11
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 1 MKISVKVLQGQEIF--LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
M I V+ + G + DV+ + +I EL+ ++ + Q+L G+ L + + D
Sbjct: 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67
Query: 59 YPQIKEGTKLNLVVK 73
Y + + L+V+
Sbjct: 68 Y-DVGLNDIIQLLVR 81
Score = 46.6 bits (111), Expect = 3e-07
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 119 VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V+ + +I EL+ ++ + Q+L G+ L + + DY + + L+V+
Sbjct: 26 VSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLVR 81
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural
genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 125
Score = 59.5 bits (144), Expect = 1e-11
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K++VK + +E F V S+ + K I++ K L+ G+ L D ++ +
Sbjct: 33 IKVTVKTPKEKEEF-AVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH- 90
Query: 61 QIKEGTKLNLVVKRALKESSQSVAGGS 87
I +G ++LV+KR SS +
Sbjct: 91 GIHDGLTVHLVIKRDPNSSSVDKYAAA 117
Score = 47.1 bits (112), Expect = 4e-07
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
V S+ + K I++ K L+ G+ L D ++ + I +G ++LV+KR
Sbjct: 46 FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLVIKR 104
Query: 177 ALKESSQSVAGGS 189
SS +
Sbjct: 105 DPNSSSVDKYAAA 117
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 57.4 bits (139), Expect = 2e-11
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ I V+ +G+ +V ++ LK +++ + L G+PL D + +Y
Sbjct: 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY- 63
Query: 61 QIKEGTKLNLV 71
+K + + +
Sbjct: 64 GLKPLSTVFMN 74
Score = 40.8 bits (96), Expect = 2e-05
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+V ++ LK +++ + L G+PL D + +Y +K + + +
Sbjct: 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMN 74
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats,
UBL conjugation pathway, nucleus, phosphoprotein; HET:
1PE; 2.40A {Saccharomyces cerevisiae}
Length = 101
Score = 57.7 bits (140), Expect = 3e-11
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 1 MKISVKVLQGQEIF-LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M +++ + GQ+ + ++V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86
Query: 60 PQIKEGTKLNLVVKR 74
I++G ++LV +
Sbjct: 87 -HIQDGHSVHLVKSQ 100
Score = 45.0 bits (107), Expect = 1e-06
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 104 FTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 163
++ +K + V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y
Sbjct: 32 HIKSGQDKWE---VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-H 87
Query: 164 IKEGTKLNLVVKR 176
I++G ++LV +
Sbjct: 88 IQDGHSVHLVKSQ 100
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein
AT2G30105; ubiquitin-like protein, NESG, leucine-rich
repeat, structural genomics; NMR {Arabidopsis thaliana}
Length = 85
Score = 56.5 bits (137), Expect = 5e-11
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K++VK G+ I L V+ + ++ +LK+++ + QKL+ G+ L++T +
Sbjct: 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS- 70
Query: 61 QIKEGTKLNLV 71
+ G KL L+
Sbjct: 71 DVGSGAKLMLM 81
Score = 45.7 bits (109), Expect = 4e-07
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+ V+ + ++ +LK+++ + QKL+ G+ L++T + + G KL L+
Sbjct: 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS-DVGSGAKLMLM 81
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin,
ubiquitin-like domain, structural genomics, signaling
protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Length = 100
Score = 56.6 bits (137), Expect = 7e-11
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K++VK + +E F V +I +LK +I++ K L+ G+ L D +
Sbjct: 23 IKVTVKTPKDKEDF-SVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC- 80
Query: 61 QIKEGTKLNLVVKRALK 77
+++G ++LV+KR +
Sbjct: 81 GVRDGLTVHLVIKRQHR 97
Score = 46.2 bits (110), Expect = 4e-07
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 107 TQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKE 166
T +K V +I +LK +I++ K L+ G+ L D + +++
Sbjct: 29 TPKDKED---FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRD 84
Query: 167 GTKLNLVVKRALK 179
G ++LV+KR +
Sbjct: 85 GLTVHLVIKRQHR 97
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell
cycle, DNA damage, DNA repair, DNA-binding, ligase, Met
binding, nuclear protein; 2.00A {Homo sapiens} SCOP:
d.15.1.1
Length = 78
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1 MKISVKVLQGQEI--FLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
M I V+ + G++ ++ + EL+ KI E + Q+L G+ + D + D
Sbjct: 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62
Query: 59 YPQIKEGTKLNLVVKRA 75
Y +++ + L+V+++
Sbjct: 63 Y-EVRLNDTIQLLVRQS 78
Score = 45.4 bits (108), Expect = 4e-07
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 104 FTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 163
T + ++ + EL+ KI E + Q+L G+ + D + DY +
Sbjct: 6 QVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY-E 64
Query: 164 IKEGTKLNLVVKRA 177
++ + L+V+++
Sbjct: 65 VRLNDTIQLLVRQS 78
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein
structur initiative, northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 101
Score = 55.8 bits (135), Expect = 1e-10
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
MK++VK + +E F V S+ + K +I++ K L+ G+ L D + +
Sbjct: 26 MKVTVKTPKEKEEF-AVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH- 83
Query: 61 QIKEGTKLNLVVKRA 75
I +G ++LV+K
Sbjct: 84 GIHDGLTVHLVIKTQ 98
Score = 44.7 bits (106), Expect = 1e-06
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 107 TQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKE 166
T K V S+ + K +I++ K L+ G+ L D + + I +
Sbjct: 32 TPKEKEE---FAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH-GIHD 87
Query: 167 GTKLNLVVKRA 177
G ++LV+K
Sbjct: 88 GLTVHLVIKTQ 98
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen,
proliferating cell nuclear antigen; replication, DNA
damage, DNA repair; 2.80A {Saccharomyces cerevisiae}
PDB: 3l10_B
Length = 169
Score = 57.3 bits (138), Expect = 2e-10
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVK 73
KE T L+LV++
Sbjct: 61 IQKEST-LHLVLR 72
Score = 41.1 bits (96), Expect = 9e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T L+LV++
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR 72
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 102
Score = 55.4 bits (133), Expect = 2e-10
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 1 MKISVKV----LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQI 56
M I+V L L VN + + + +P + +++ + L D
Sbjct: 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67
Query: 57 LDYPQIKEGTKLNLVVKRALKESSQS 82
L +K+G + L+ K + +
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPG 93
Score = 44.6 bits (105), Expect = 2e-06
Identities = 10/68 (14%), Positives = 27/68 (39%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
++VN + + + +P + +++ + L D L +K+G + L+ K
Sbjct: 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85
Query: 177 ALKESSQS 184
+ +
Sbjct: 86 NVGLRTPG 93
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana}
Length = 94
Score = 54.7 bits (132), Expect = 3e-10
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ ++VK ++ ++V+ ++ LK+KI+ P+ +L +G L D + L+
Sbjct: 16 IHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74
Query: 61 QIKEGTKLNLVVK 73
I E +++ + +K
Sbjct: 75 GITEFSEIVVFLK 87
Score = 43.5 bits (103), Expect = 3e-06
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V+ ++ LK+KI+ P+ +L +G L D + L+ I E +++ + +K
Sbjct: 29 VEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 58.5 bits (140), Expect = 3e-10
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEAL---KIPVSDQKLLATGRPLLDTKQIL 57
+ I++K LQ Q + + + ++ LK KI PV+ QKL+ G+ L D I
Sbjct: 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67
Query: 58 DYPQIKEGTKLNLVVKRALKESSQSVAGGSNVT 90
DY +I E + ++V + S ++ T
Sbjct: 68 DY-RIDEKNFVVVMVTKTKAGQGTSAPPEASPT 99
Score = 38.4 bits (88), Expect = 0.001
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 117 IKVNSEMSILELKNKINEAL---KIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
I++ + ++ LK KI PV+ QKL+ G+ L D I DY +I E + ++
Sbjct: 22 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVM 80
Query: 174 VKRALKESSQSVAGGSNVT 192
V + S ++ T
Sbjct: 81 VTKTKAGQGTSAPPEASPT 99
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K
4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Length = 128
Score = 54.7 bits (131), Expect = 6e-10
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V S +I +K+KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 QIKEGTKLNLVVKR 74
KE T ++ R
Sbjct: 61 IQKESTLHLVLRLR 74
Score = 36.6 bits (84), Expect = 0.002
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
++V S +I +K+KI + IP Q+L+ G+ L D + + DY KE T ++ R
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 54.0 bits (130), Expect = 9e-10
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTK 67
L GQ + + + +K KI+EA +P QKL G + D+ + Y + G
Sbjct: 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMASGAV 101
Query: 68 LNLVVK 73
++L +K
Sbjct: 102 IHLALK 107
Score = 44.4 bits (105), Expect = 2e-06
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+ + +K KI+EA +P QKL G + D+ + Y + G ++L +K
Sbjct: 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMASGAVIHLALK 107
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 53.2 bits (128), Expect = 9e-10
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M++ V+ + +V + ++ ++K + I DQ +L G PL D +
Sbjct: 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC- 76
Query: 61 QIKEGTKLNLVV 72
++ T L +
Sbjct: 77 GVEALTTLEVAG 88
Score = 44.0 bits (104), Expect = 2e-06
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+V + ++ ++K + I DQ +L G PL D + ++ T L +
Sbjct: 32 FEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEVAG 88
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Length = 111
Score = 50.6 bits (121), Expect = 1e-08
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 1 MKISVKVLQ-GQEIFLDVNSEMSILE-LKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
+++S GQ + + V S + LK KI ++IP + QKL L D +
Sbjct: 30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89
Query: 59 YPQIKEGTKLNLVVK 73
Y + G L L ++
Sbjct: 90 Y-NVGAGEILTLSLR 103
Score = 44.0 bits (104), Expect = 3e-06
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 117 IKVNSEMSILE-LKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I V S + LK KI ++IP + QKL L D + Y + G L L ++
Sbjct: 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLR 103
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed;
ubiquitin fold, structural genomics, D7WSU128E protein;
HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Length = 95
Score = 45.5 bits (108), Expect = 6e-07
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 3 ISVKV-LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 61
+ +K+ + + V + + ELK KI+ +P + QK++ G + + K + +
Sbjct: 18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK- 75
Query: 62 IKEGTKLNLV 71
+ G K+ +V
Sbjct: 76 VTSGAKIMVV 85
Score = 39.4 bits (92), Expect = 1e-04
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+KV + + ELK KI+ +P + QK++ G + + K + + + G K+ +V
Sbjct: 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK-VTSGAKIMVV 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin,
fusion protein, fluore protein, transcription; HET: CR2;
1.40A {Aequorea victoria} PDB: 3ako_B*
Length = 307
Score = 47.5 bits (112), Expect = 1e-06
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 292
Query: 61 QIKEGTKLNLV 71
I++ + L+LV
Sbjct: 293 NIQKESTLHLV 303
Score = 39.0 bits (90), Expect = 0.001
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
++V +I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV
Sbjct: 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLV 303
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP,
oligomerization, ubiquitin insertion, hydrolase binding;
2.17A {Bacillus amyloliquefaciens}
Length = 189
Score = 45.4 bits (107), Expect = 3e-06
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 164
Query: 61 QIKEGTKLNLVVK 73
I++ + L+LV++
Sbjct: 165 NIQKESTLHLVLR 177
Score = 41.9 bits (98), Expect = 5e-05
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 37/171 (21%)
Query: 5 VKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKE 64
V G+ I D+ + K+ + + T
Sbjct: 44 ADVAPGKSIGGDI-----FSNREGKLPGKSGRTWREADINYTSGFRNS------------ 86
Query: 65 GTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMS 124
R L S ++ + + + F +T + K ++V +
Sbjct: 87 --------DRILYSSD---------WLIYKTTDHYGGQIFVKTLTGKTIT--LEVEPSDT 127
Query: 125 ILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 128 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 4e-06
Identities = 42/244 (17%), Positives = 87/244 (35%), Gaps = 68/244 (27%)
Query: 17 VNSEMSILELKNK-INEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRA 75
++ E + + K I + V + + D K + D P+ +++ K
Sbjct: 7 MDFETGEHQYQYKDI-----LSVFEDAFVDN----FDCKDVQDMPK-------SILSKEE 50
Query: 76 LKESSQSVAGGSNVTILRDASYKFLRKYFT-ETQSNKIADEFIKVNSEMSILE-----LK 129
+ + + +DA LR ++T ++ ++ +F++ +L L
Sbjct: 51 IDH----------IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-----EVLRINYKFLM 95
Query: 130 NKINEALKIPVSDQKLLATGR-PLLDTKQIL-DY--PQIKEGTKLNLVVKRALKE--SSQ 183
+ I + P ++ R L + Q+ Y +++ KL ++AL E ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLELRPAK 151
Query: 184 SVA----GGSNVTIL-----RDASYKFLRKYFTETQSNKIADEF-IKEFNKSISTLSLDD 233
+V GS T + YK K KI F + N + L+
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLS--YKVQCKM-----DFKI---FWLNLKNCNSPETVLEM 201
Query: 234 LEAL 237
L+ L
Sbjct: 202 LQKL 205
Score = 41.4 bits (96), Expect = 2e-04
Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 82/273 (30%)
Query: 1 MKISVKVLQGQE---------IF-LDVNSEMSILEL--KNKINEALKIPVSD--QKLLAT 46
++ S+ VL+ E +F + +L L + I + + V+ + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 47 GRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTE 106
+P T I ++ K+ L + AL S + D Y + + ++
Sbjct: 419 KQPKESTISIPSI-YLE--LKVKLENEYALHRS------------IVD-HYNIPKTFDSD 462
Query: 107 TQSNKIADEFI--KVNSEMSILELKNKINEALKIPVS----DQKLLATGRPLLDTKQILD 160
D++ + + +E ++ + + +QK+ + IL+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 161 YPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTE---TQSNKIADE 217
L+ KF + Y + +
Sbjct: 523 --------------------------------TLQQ--LKFYKPYICDNDPKYERLVNA- 547
Query: 218 FIKEFNKSISTLSLD----DLEALASSYLMEEE 246
I +F I + DL +A LM E+
Sbjct: 548 -ILDFLPKIEENLICSKYTDLLRIA---LMAED 576
Score = 38.3 bits (88), Expect = 0.002
Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 65/260 (25%)
Query: 16 DVNSEMSILELKNKINEALKI--PVSDQKLLAT---G-RPLLDT--KQILDYPQIKEGTK 67
+ +E+ L L + V + K + LL T KQ+ D+ T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 68 LNLV--------------VKRALKESSQS----VAGGSNVTI------LRD--ASYKFLR 101
++L + + L Q V + + +RD A++ +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 102 KYFTETQSNKIA--------DEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL 153
+ + I E+ K+ +S+ + IP L+
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------PSAHIPTILLSLIWFDVIKS 402
Query: 154 DTKQILDYPQIKEGTKLNLVVKRALKESSQSVAG--------GSNVTILRD---ASYKFL 202
D +++ + K +LV K+ KES+ S+ N L Y
Sbjct: 403 DVMVVVN-----KLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 203 RKYFTETQSNKIADEFIKEF 222
+ + ++ D++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSH 476
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold,
ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Length = 105
Score = 43.5 bits (102), Expect = 4e-06
Identities = 14/79 (17%), Positives = 30/79 (37%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ + + I+L V +M++ LK+ + P Q+ + R D + + +
Sbjct: 27 VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86
Query: 61 QIKEGTKLNLVVKRALKES 79
+ G L + A S
Sbjct: 87 VRQNGDSAYLYLLSARNTS 105
Score = 38.5 bits (89), Expect = 2e-04
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+ V +M++ LK+ + P Q+ + R D + + + + G L +
Sbjct: 41 LTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100
Query: 177 ALKES 181
A S
Sbjct: 101 ARNTS 105
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich,
lectin-like, SPRY, protein transport/signaling protein
complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB:
1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A
3zrc_A* 3zrf_A
Length = 118
Score = 43.5 bits (102), Expect = 5e-06
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MKISVKVLQGQE-IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
M + + + + + IF D ++ ELK + LK P +Q+L + L D K + +
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60
Score = 36.9 bits (85), Expect = 0.001
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 161
F ++ ELK + LK P +Q+L + L D K + +
Sbjct: 15 FTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific
protease 14, USP14, ubiquitin-like fold, structural
genomics; NMR {Mus musculus} SCOP: d.15.1.1
Length = 96
Score = 42.5 bits (100), Expect = 8e-06
Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++VK + + +++N++ + K ++ + + QK++ G L D
Sbjct: 8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDD--WGNI 65
Query: 61 QIKEGTKLNLV 71
++K G + ++
Sbjct: 66 KMKNGMTVLMM 76
Score = 37.9 bits (88), Expect = 4e-04
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
E +++N++ + K ++ + + QK++ G L D ++K G + ++
Sbjct: 20 EGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDD--WGNIKMKNGMTVLMM 76
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; ENDPLASMIC reticulum
stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 93
Score = 39.9 bits (93), Expect = 6e-05
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 1 MKISVKV--LQGQEIFLDVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQI 56
+ + VK + +++ L + S+ LK ++ + DQ+L+ +G+ LLD + +
Sbjct: 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67
Query: 57 LDY-PQIKEGTKLNLVVKRALKESS 80
D P+ ++ L+LV SS
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSGPSS 92
Score = 37.6 bits (87), Expect = 3e-04
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 109 SNKIADEFIKVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQILDY-PQIK 165
+ + D + + S+ LK ++ + DQ+L+ +G+ LLD + + D P+ +
Sbjct: 16 NQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQE 75
Query: 166 EGTKLNLVVKRALKESS 182
+ L+LV SS
Sbjct: 76 KRHVLHLVCNVKSGPSS 92
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; UBL domain, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 99
Score = 39.5 bits (92), Expect = 9e-05
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 1 MKISVKVLQGQEIFLDVNSEMS--ILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQI 56
+ + +K + ++ ++ + +LK ++ K DQ+L+ +GR L D Q+
Sbjct: 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83
Query: 57 LDY-PQIKEGTKLNLV 71
D + E ++LV
Sbjct: 84 KDILRKQDEYHMVHLV 99
Score = 38.0 bits (88), Expect = 4e-04
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 109 SNKIADEFIKVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQILDY-PQIK 165
+ K +D+ I ++ +LK ++ K DQ+L+ +GR L D Q+ D +
Sbjct: 32 NQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQD 91
Query: 166 EGTKLNLV 173
E ++LV
Sbjct: 92 EYHMVHLV 99
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics,
apoptosis, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 92
Score = 39.0 bits (90), Expect = 1e-04
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+ +SE + +L + E + +P S QKL+ G+ L + + L I++G ++ L+
Sbjct: 24 TSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83
Query: 175 KRALKESS 182
K+ SS
Sbjct: 84 KKNSGPSS 91
Score = 39.0 bits (90), Expect = 1e-04
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 3 ISVKVLQGQEIF------LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQI 56
++V V E +SE + +L + E + +P S QKL+ G+ L + +
Sbjct: 8 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 67
Query: 57 LDYPQIKEGTKLNLVVKRALKESS 80
L I++G ++ L+ K+ SS
Sbjct: 68 LSALGIQDGCRVMLIGKKNSGPSS 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative, hydrolase; NMR {Mus musculus}
Length = 86
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA 45
++ K G + ++S + EL+ +I I Q++L
Sbjct: 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45
Score = 27.5 bits (61), Expect = 1.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 119 VNSEMSILELKNKINEALKIPVSDQKLLA 147
++S + EL+ +I I Q++L
Sbjct: 17 LSSRTRLRELQGQIAAITGIAPGSQRILV 45
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Length = 90
Score = 35.6 bits (82), Expect = 0.002
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 1 MKISVKVLQGQEIFLD-VNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQI 56
+ I VK GQE + ++ + ++L+LK + + QKLL G+P + ++
Sbjct: 8 LPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66
Query: 57 LDYPQIKEGTKLNLV 71
+K TK+ ++
Sbjct: 67 GALK-LKPNTKIMMM 80
Score = 31.4 bits (71), Expect = 0.055
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQILDYPQIKEGTKLN 171
++ + ++L+LK + + QKLL G+P + ++ +K TK+
Sbjct: 20 SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALK-LKPNTKIM 78
Query: 172 LV 173
++
Sbjct: 79 MM 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 49/256 (19%), Positives = 88/256 (34%), Gaps = 97/256 (37%)
Query: 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDYPQIKEGT 66
++ E + + + SILE + NE + P +L+ + L +Q+ DY +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSP-----MLSISN---LTQEQVQDY--VN--- 354
Query: 67 KLNLVVKRALKESSQ-SVA---GGSNVTI------LRDASYKF---LRKYFTET---QSN 110
K N L Q ++ G N+ + L Y LRK + QS
Sbjct: 355 KTN----SHLPAGKQVEISLVNGAKNLVVSGPPQSL----YGLNLTLRKAKAPSGLDQSR 406
Query: 111 --------KIADEFIKVNS-----------EMSILELKNK---IN-EALKIPV------S 141
K ++ F+ V S ++ +L N + ++IPV S
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 142 DQKLLAT--GRPLLD---TKQ-------------ILDY-P-----------QIKEGTKLN 171
D ++L+ ++D ILD+ P + K+GT +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Query: 172 LVVKRALKESSQSVAG 187
++V L + G
Sbjct: 527 VIVAGTLDINPDDDYG 542
Score = 35.0 bits (80), Expect = 0.024
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 43/175 (24%)
Query: 80 SQSVAG-GSNVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKI 138
SQ G G + L S + + AD K SIL++ L I
Sbjct: 1626 SQEQ-GMGMD---LYKTSKAA-QDVWNR------ADNHFKDTYGFSILDIVINNPVNLTI 1674
Query: 139 PVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSVA-GGSNVTILRDA 197
+K G+ + + + + I +G + + + E S S +
Sbjct: 1675 HFGGEK----GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-- 1728
Query: 198 SYKFLRKYFTE-TQ------S----NKIADEFIKEFNKSISTLSLDDLE--ALAS 239
T+ TQ + + + + + + SL E ALAS
Sbjct: 1729 ---------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG--EYAALAS 1772
Score = 30.8 bits (69), Expect = 0.56
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 205 YFTETQSNKIADEFIKEFNKSISTLSLDD-----LEALASSYL--MEEECQP 249
+F +Q + ++F K + + DD E L +L + +P
Sbjct: 27 FFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAE-LVGKFLGYVSSLVEP 74
Score = 30.4 bits (68), Expect = 0.75
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 200 KFLRKYFT----ETQSNKIADEFIK----EFNKSISTLSLDDLEALASSYLMEEE 246
KFL + E D+ + EF L +D+ ALA+ L E +
Sbjct: 63 KFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQEND 113
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 34.7 bits (79), Expect = 0.006
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDY 59
M + + + + + ++ E+K + L+IPVS L + D+ +
Sbjct: 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68
Query: 60 PQIKEGTKLNLVVKRALKESSQSVAGGSN 88
+ + L ++ SS S AG
Sbjct: 69 -HLPKNNSLYVLTPDLPPPSSSSHAGALQ 96
Score = 30.1 bits (67), Expect = 0.19
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLA-TGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+ + ++ E+K + L+IPVS L + D+ + + + L ++
Sbjct: 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL-HLPKNNSLYVLTP 81
Query: 176 RALKESSQSVAGGSN 190
SS S AG
Sbjct: 82 DLPPPSSSSHAGALQ 96
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 34.4 bits (78), Expect = 0.028
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQIL 57
+ + VK G+E +D+ + ++ L+++I ++ QKLL G+ D +I
Sbjct: 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKIS 64
Query: 58 DYPQIKEGTKLNLV 71
+K KL +V
Sbjct: 65 ALE-LKPNFKLMMV 77
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLL---ATGRPLLDTKQILDYPQIKEGTKLNLV 173
+ + + ++ L+++I ++ QKLL G+ D +I +K KL +V
Sbjct: 19 VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALE-LKPNFKLMMV 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 105
Score = 32.6 bits (74), Expect = 0.033
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQK---------------LLA 45
M + V + G+ + + V ++L+LK I +++ + L +
Sbjct: 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67
Query: 46 TGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQS 82
G L + ++ L I+ +++ + K K S
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKSGPSS 104
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton,
microtubule, CESG, structural genomics, protein
structure initiative, PSI; NMR {Caenorhabditis elegans}
SCOP: d.15.1.1
Length = 122
Score = 31.0 bits (70), Expect = 0.14
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLL------ATGRPLLDTKQILDYPQIKEGTKL 170
K + MS+ +LK K+ + V ++ L D + L +++G ++
Sbjct: 22 KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81
Query: 171 NLV 173
+ V
Sbjct: 82 HAV 84
Score = 29.1 bits (65), Expect = 0.61
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 17 VNSEMSILELKNKINEALKIPVSDQKLL------ATGRPLLDTKQILDYPQIKEGTKLNL 70
+ MS+ +LK K+ + V ++ L D + L +++G +++
Sbjct: 24 YPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83
Query: 71 V 71
V
Sbjct: 84 V 84
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like
domain, UBL, ubiquitin specific protease, HOST-virus
interaction, nucleus, protease; NMR {Homo sapiens}
Length = 130
Score = 29.8 bits (67), Expect = 0.40
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 88 NVTILRDASYKFLRKYFTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKL 145
V I+ + + + K+ KV S+ E +++ + P +L
Sbjct: 32 QVQIVAEDQFCGHQG-NDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRL 88
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Length = 100
Score = 28.9 bits (64), Expect = 0.60
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ G+++ + N++ +I +LK I + L D + DY
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY- 87
Query: 61 QIKEGTKLNL 70
+I +G L L
Sbjct: 88 EIHDGMNLEL 97
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172
+K N++ +I +LK I + L D + DY +I +G L L
Sbjct: 43 VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY-EIHDGMNLEL 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution
PSI-2, structural genomics, protein structure
initiative; NMR {Arabidopsis thaliana}
Length = 97
Score = 28.7 bits (64), Expect = 0.62
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLL------ATGRPLLDTKQILDYPQIKEGTKL 170
+ + +MS+ +K K+ + V+ L + L D + L + +G +L
Sbjct: 31 ARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90
Query: 171 NLVVKR 176
+++
Sbjct: 91 HIIDLD 96
Score = 26.8 bits (59), Expect = 3.3
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 17 VNSEMSILELKNKINEALKIPVSDQKLL------ATGRPLLDTKQILDYPQIKEGTKLNL 70
+ +MS+ +K K+ + V+ L + L D + L + +G +L++
Sbjct: 33 FSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92
Query: 71 VVKR 74
+
Sbjct: 93 IDLD 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.76
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 208 ETQSNKIADEFIKEFNKSISTLSLDDLEALASSYLME 244
E Q+ +K+ S+ + D ALA ME
Sbjct: 18 EKQA-------LKKLQASLKLYADDSAPALAIKATME 47
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66,
peptide binding protein; 1.40A {Saccharomyces
cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Length = 93
Score = 28.0 bits (62), Expect = 0.94
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ V G+++ + E S+ + K ++ + + L G L D + DY
Sbjct: 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY- 80
Query: 61 QIKEGTKLNL 70
++ + T L L
Sbjct: 81 EVHDQTNLEL 90
Score = 28.0 bits (62), Expect = 1.1
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNL 172
+K E S+ + K ++ + + L G L D + DY ++ + T L L
Sbjct: 36 VKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY-EVHDQTNLEL 90
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 29.4 bits (66), Expect = 1.1
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 7 VLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL--DTKQILDYPQIKE 64
+ Q + ++S + + + KI S+Q+L+ GR L+ + +P+ E
Sbjct: 318 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTE 377
Query: 65 GTKLNLVVK 73
+ +V +
Sbjct: 378 ENPIFVVSR 386
Score = 28.7 bits (64), Expect = 2.2
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLL--DTKQILDYPQIKEGTKLNLVV 174
I ++S + + + KI S+Q+L+ GR L+ + +P+ E + +V
Sbjct: 326 IYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 385
Query: 175 K 175
+
Sbjct: 386 R 386
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical
protein, structural genomics, NPPSFA; NMR {Arabidopsis
thaliana} SCOP: d.15.1.1
Length = 107
Score = 27.9 bits (61), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 18 NSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIK 63
+++ +LK I + L+IP+ +Q L+T R LL K D+
Sbjct: 25 GPHITVSQLKTLIQDQLQIPIHNQ-TLSTNRNLLLAKSPSDFLAFT 69
Score = 27.9 bits (61), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 120 NSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIK 165
+++ +LK I + L+IP+ +Q L+T R LL K D+
Sbjct: 25 GPHITVSQLKTLIQDQLQIPIHNQ-TLSTNRNLLLAKSPSDFLAFT 69
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 28.8 bits (65), Expect = 2.0
Identities = 5/37 (13%), Positives = 20/37 (54%)
Query: 216 DEFIKEFNKSISTLSLDDLEALASSYLMEEECQPVAV 252
++++F + L+++ ++A + +L ++ V+
Sbjct: 382 LSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSA 418
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 27.4 bits (60), Expect = 2.2
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 4 SVKVL---QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
+VKV+ GQEI + + + LK+ + L IP S ++ +G+ L + + ++ +
Sbjct: 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQH 75
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold,
ATP-binding, nucleotide- binding,
serine/threonine-protein kinase; HET: AMP; 1.60A
{Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A*
3pdt_A*
Length = 307
Score = 28.1 bits (61), Expect = 2.7
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 15/54 (27%)
Query: 171 NLVVKRALKESSQSVAGGSNVTILRDASYKFLRKYFTETQSNKIADEFIKEFNK 224
V+K KE+ Q + YF + + + ++ +FN+
Sbjct: 107 KFVLKLYKKEAEQQAS---------------RELYFEDVKMQMVCRDWGNKFNQ 145
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 28.0 bits (63), Expect = 2.9
Identities = 3/37 (8%), Positives = 17/37 (45%)
Query: 216 DEFIKEFNKSISTLSLDDLEALASSYLMEEECQPVAV 252
+++ + + + ++++ + + ++ E V V
Sbjct: 375 LDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVV 411
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Length = 530
Score = 28.0 bits (62), Expect = 3.1
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 110 NKIADEFIKVNSEMSILELKNKINEALKIPVSDQKL 145
K+ KV S+ E +++ + P +L
Sbjct: 33 EKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRL 68
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 27.3 bits (61), Expect = 5.6
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 13 IFLDV-----NSEMSILELKNK--INEALK--IPVSDQKLLATGRPLLDTKQILD 58
I +D+ NS+ + +N+ + +A + I V +++TGR D I +
Sbjct: 7 IAIDLDGTLLNSKHQVSL-ENENALRQAQRDGIEV----VVSTGRAHFDVMSIFE 56
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 27.1 bits (60), Expect = 6.1
Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 26/119 (21%)
Query: 78 ESSQSVAGGSNVTIL-----RDASYKFLRKYFTETQSNKIADE---FIKVNSEMSILELK 129
+ S+ G + I ++ + +FL Y + + ++ V + EL
Sbjct: 254 QPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELA 313
Query: 130 NKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSVAGG 188
+ + + G + P I + + V+ A+ + A G
Sbjct: 314 K--DPRIA-ATMEN--AQKGEIM---------PNIPQMSAFWYAVRTAV----INAASG 354
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 26.9 bits (59), Expect = 6.5
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 180 ESSQSVAGGSNVTILRDASY-----------------KFLRKYFTETQSNKIADEFIKEF 222
++ +V+ G+++ + SY + L KY++ + + F EF
Sbjct: 16 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75
Query: 223 NKSISTLSL 231
+KS S+ L
Sbjct: 76 SKSDSSFHL 84
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 26.7 bits (58), Expect = 8.1
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 17 VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 73
+NS SI +K ++ + L PL++ ++ ++ +VVK
Sbjct: 102 INSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVK 158
Score = 26.7 bits (58), Expect = 8.1
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 119 VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+NS SI +K ++ + L PL++ ++ ++ +VVK
Sbjct: 102 INSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVK 158
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics,
PSI-2, structure initiative; HET: DNA; 2.30A
{Chlorobium tepidum tls}
Length = 126
Score = 25.6 bits (57), Expect = 9.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 50 LLDTK-QILDYPQIKEGTKLN-------LVVKRALKESSQSV 83
L TK QIL + I GT L + K A++ES+ S+
Sbjct: 31 FLSTKNQILRHETITIGT-LTASLIHPREIFKAAIRESAHSI 71
Score = 25.6 bits (57), Expect = 9.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 152 LLDTK-QILDYPQIKEGTKLN-------LVVKRALKESSQSV 185
L TK QIL + I GT L + K A++ES+ S+
Sbjct: 31 FLSTKNQILRHETITIGT-LTASLIHPREIFKAAIRESAHSI 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.336
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,549,852
Number of extensions: 205291
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 178
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.4 bits)