RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1973
(252 letters)
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 62.6 bits (152), Expect = 8e-14
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M+I VK L G+ I L+V +I +K KI + IP Q+L+ G+ L D + + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY- 59
Query: 61 QIKEGTKLNLVVK 73
I++ + L+LV++
Sbjct: 60 NIQKESTLHLVLR 72
Score = 43.8 bits (103), Expect = 6e-07
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
++V +I +K KI + IP Q+L+ G+ L D + + DY I++ + L+LV++
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 72
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 60.1 bits (145), Expect = 1e-12
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALK---IPVSDQKLLATGRPLLDTKQIL 57
M++++K LQ Q +D++ E ++ LK KI PV+ QKL+ G+ L D +
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYPQIKEGTKLNLVVKRALKESSQSVAGGSN 88
+Y +I E + ++V + S+ + A +
Sbjct: 61 EY-KIDEKNFVVVMVTKPKAVSTPAPATLEH 90
Score = 40.4 bits (94), Expect = 2e-05
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 117 IKVNSEMSILELKNKINEALK---IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
I ++ E ++ LK KI PV+ QKL+ G+ L D + +Y +I E + ++
Sbjct: 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVM 73
Query: 174 VKRALKESSQSVAGGSN 190
V + S+ + A +
Sbjct: 74 VTKPKAVSTPAPATLEH 90
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 59.1 bits (143), Expect = 2e-12
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M I VK L G+EI +D+ +I +K ++ E IP Q+L+ G+ L D K DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY- 59
Query: 61 QIKEGTKLNLVVK 73
I+ G+ L+LV+
Sbjct: 60 NIEGGSVLHLVLA 72
Score = 39.5 bits (92), Expect = 2e-05
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
I + +I +K ++ E IP Q+L+ G+ L D K DY I+ G+ L+LV+
Sbjct: 15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGGSVLHLVLA 72
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 60.1 bits (145), Expect = 2e-12
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQK---------------LLA 45
M + V + G+ + + V ++L+LK I +++ + L +
Sbjct: 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67
Query: 46 TGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQS 82
G L + ++ L I+ +++ + K K S
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKSGPSS 104
Score = 42.3 bits (99), Expect = 4e-06
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQK---------------LLATGRPLLDTKQILD 160
+ V ++L+LK I +++ + L + G L + ++ L
Sbjct: 21 PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLR 80
Query: 161 YPQIKEGTKLNLVVKRALKESSQS 184
I+ +++ + K K S
Sbjct: 81 DYGIRNRDEVSFIKKLGQKSGPSS 104
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 58.0 bits (140), Expect = 7e-12
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK G +N IL LK +I + +P Q+L G+ L D + Y
Sbjct: 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY- 66
Query: 61 QIKEGTKLNLVVKR 74
I++ L L K+
Sbjct: 67 GIQDSDTLILSKKK 80
Score = 39.5 bits (92), Expect = 3e-05
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+N IL LK +I + +P Q+L G+ L D + Y I++ L L K+
Sbjct: 22 YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSKKK 80
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 57.2 bits (138), Expect = 8e-12
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ I V+ +G+ +V ++ LK +++ + L G+PL D + +Y
Sbjct: 4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY- 62
Query: 61 QIKEGTKLNLVVK 73
+K + + + ++
Sbjct: 63 GLKPLSTVFMNLR 75
Score = 40.6 bits (95), Expect = 8e-06
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+V ++ LK +++ + L G+PL D + +Y +K + + + ++
Sbjct: 18 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLR 75
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 55.3 bits (133), Expect = 5e-11
Identities = 13/73 (17%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
M + V+ ++V+S+ SIL+LK + + +P +++ G+ L + + +
Sbjct: 3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC- 61
Query: 61 QIKEGTKLNLVVK 73
+++ + +++V +
Sbjct: 62 DLEQQSIVHIVQR 74
Score = 38.7 bits (90), Expect = 4e-05
Identities = 13/72 (18%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 104 FTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 163
F S+ ++V+S+ SIL+LK + + +P +++ G+ L + + +
Sbjct: 6 FVRFNSSYGFP--VEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC-D 62
Query: 164 IKEGTKLNLVVK 175
+++ + +++V +
Sbjct: 63 LEQQSIVHIVQR 74
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 54.8 bits (132), Expect = 6e-11
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ VK L Q V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y
Sbjct: 1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY- 59
Query: 61 QIKEGTKLNLVVK 73
+ ++LV +
Sbjct: 60 NVGGKV-IHLVER 71
Score = 37.1 bits (86), Expect = 1e-04
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V ++M++ E K I ++ IP Q+L+ GR L D K++ +Y + ++LV +
Sbjct: 15 FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NVGGKV-IHLVER 71
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 55.4 bits (133), Expect = 7e-11
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 1 MKISV----KVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQI 56
M I+V + L L VN + + + +P + +++ + L D
Sbjct: 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67
Query: 57 LDYPQIKEGTKLNLVVKRALKESSQS 82
L +K+G + L+ K + +
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPG 93
Score = 43.8 bits (103), Expect = 1e-06
Identities = 10/68 (14%), Positives = 27/68 (39%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
++VN + + + +P + +++ + L D L +K+G + L+ K
Sbjct: 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85
Query: 177 ALKESSQS 184
+ +
Sbjct: 86 NVGLRTPG 93
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 54.1 bits (130), Expect = 1e-10
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 1 MKISVKVLQGQEIF--LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
M I V+ + G + DV+ + +I EL+ ++ + Q+L G+ L + + D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 59 YPQIKEGTKLNLVVK 73
Y + + L+V+
Sbjct: 61 Y-DVGLNDIIQLLVR 74
Score = 38.7 bits (90), Expect = 4e-05
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V+ + +I EL+ ++ + Q+L G+ L + + DY + + L+V+
Sbjct: 16 IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLVR 74
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 53.7 bits (129), Expect = 2e-10
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTK 67
L GQ + + + +K KI+EA +P QKL G + D+ + Y + G
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMANGAV 77
Query: 68 LNLVVK 73
++L +K
Sbjct: 78 IHLALK 83
Score = 46.0 bits (109), Expect = 1e-07
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
+ + +K KI+EA +P QKL G + D+ + Y + G ++L +K
Sbjct: 26 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMANGAVIHLALK 83
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 53.4 bits (128), Expect = 2e-10
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1 MKISVKVLQGQEIF--LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
M I V+ + G++ ++ + EL+ KI E + Q+L G+ + D + D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 59 YPQIKEGTKLNLVVKRA 75
Y +++ + L+V+++
Sbjct: 61 Y-EVRLNDTIQLLVRQS 76
Score = 39.1 bits (91), Expect = 3e-05
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 104 FTETQSNKIADEFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQ 163
T + ++ + EL+ KI E + Q+L G+ + D + DY +
Sbjct: 4 QVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY-E 62
Query: 164 IKEGTKLNLVVKRA 177
++ + L+V+++
Sbjct: 63 VRLNDTIQLLVRQS 76
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 53.8 bits (129), Expect = 2e-10
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ + +K L E E ++ LK+K S KL+ GR L D + L
Sbjct: 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSL 64
Query: 61 QIKEGTKLNLVVKRALKESSQS 82
I ++ S
Sbjct: 65 NITNNCVIHCHRSPPGAAVSGP 86
Score = 35.7 bits (82), Expect = 8e-04
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
E E ++ LK+K S KL+ GR L D + L I ++
Sbjct: 20 ELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHR 76
Query: 175 KRALKESSQS 184
S
Sbjct: 77 SPPGAAVSGP 86
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 52.8 bits (127), Expect = 3e-10
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ I +K Q + ++V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y
Sbjct: 2 LNIHIKSGQ-DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY- 59
Query: 61 QIKEGTKLNLVVKR 74
I++G ++LV +
Sbjct: 60 HIQDGHSVHLVKSQ 73
Score = 44.4 bits (105), Expect = 4e-07
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+ V E ++L+ K IN+A IPV++Q+L+ +G+ L D + + Y I++G ++LV +
Sbjct: 15 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKSQ 73
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 52.6 bits (126), Expect = 5e-10
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINE---ALKIPVSDQKLLATGRPLLDTKQIL 57
+ I++K LQ Q + + + ++ LK KI PV+ QKL+ G+ L D I
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 58 DYPQIKEGTKLNLVV 72
DY +I E + ++V
Sbjct: 63 DY-RIDEKNFVVVMV 76
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 52.7 bits (126), Expect = 5e-10
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++SVK Q F + ++ K +I++ L L+ TG+ L D +
Sbjct: 11 IRVSVKTPQDCHEF-FLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR- 68
Query: 61 QIKEGTKLNLVVK 73
I +G+ +++VV+
Sbjct: 69 GILDGSTVHVVVR 81
Score = 42.3 bits (99), Expect = 2e-06
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+ ++ K +I++ L L+ TG+ L D + I +G+ +++VV
Sbjct: 22 HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVV 80
Query: 175 K 175
+
Sbjct: 81 R 81
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 52.2 bits (125), Expect = 6e-10
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 3 ISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLDTKQILDYP 60
++VK+L G E + ++S MS+ ELK +I + + + Q+L +G L D +
Sbjct: 3 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ- 61
Query: 61 QIKEGTKLNLVVKRA 75
+ G+ + LVV ++
Sbjct: 62 GLGPGSTVLLVVDKS 76
Score = 38.0 bits (88), Expect = 7e-05
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKL--LATGRPLLDTKQILDYPQIKEGTKLNLVV 174
+ ++S MS+ ELK +I + + + Q+L +G L D + + G+ + LVV
Sbjct: 15 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ-GLGPGSTVLLVV 73
Query: 175 KRA 177
++
Sbjct: 74 DKS 76
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 51.5 bits (123), Expect = 2e-09
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K++VK + +E F V S+ + K I++ K L+ G+ L D ++ +
Sbjct: 33 IKVTVKTPKEKEEF-AVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH- 90
Query: 61 QIKEGTKLNLVVK 73
I +G ++LV+K
Sbjct: 91 GIHDGLTVHLVIK 103
Score = 42.3 bits (99), Expect = 4e-06
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVV 174
E V S+ + K I++ K L+ G+ L D ++ + I +G ++LV+
Sbjct: 44 EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLVI 102
Query: 175 K 175
K
Sbjct: 103 K 103
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 50.7 bits (121), Expect = 2e-09
Identities = 14/74 (18%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++ +++ G+++ L V S ++ +K +++ A + Q+ +GRPL D + +
Sbjct: 4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL- 62
Query: 61 QIKEGTKLNLVVKR 74
+I + + ++V +
Sbjct: 63 KIPKDYVVQVIVSQ 76
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 49.5 bits (118), Expect = 6e-09
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 3 ISVKVLQGQEIF------LDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQI 56
++V V E +SE + +L + E + +P S QKL+ G+ L + +
Sbjct: 2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61
Query: 57 LDYPQIKEGTKLNLVVKR 74
L I++G ++ L+ K+
Sbjct: 62 LSALGIQDGCRVMLIGKK 79
Score = 47.2 bits (112), Expect = 5e-08
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 119 VNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
+SE + +L + E + +P S QKL+ G+ L + + L I++G ++ L+ K+
Sbjct: 22 GSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 79
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 49.2 bits (117), Expect = 8e-09
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K++VK + +E V +I +LK +I++ K L+ G+ L D +
Sbjct: 8 IKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC- 65
Query: 61 QIKEGTKLNLVVK 73
+++G ++LV+K
Sbjct: 66 GVRDGLTVHLVIK 78
Score = 38.8 bits (90), Expect = 5e-05
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
V +I +LK +I++ K L+ G+ L D + +++G ++LV+K
Sbjct: 21 FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIK 78
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 49.2 bits (117), Expect = 9e-09
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLAT---GRPLLDTKQIL 57
+ I VK + ++ + ++L+LK + + QKLL G+P + ++
Sbjct: 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67
Query: 58 DYPQIKEGTKLNLVVKRALKESS 80
+K TK+ ++ R SS
Sbjct: 68 ALK-LKPNTKIMMMGTRESGPSS 89
Score = 37.7 bits (87), Expect = 2e-04
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 115 EFIKVNSEMSILELKNKINEALKIPVSDQKLLAT---GRPLLDTKQILDYPQIKEGTKLN 171
++ + ++L+LK + + QKLL G+P + ++ +K TK+
Sbjct: 20 SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALK-LKPNTKIM 78
Query: 172 LVVKRALKESS 182
++ R SS
Sbjct: 79 MMGTRESGPSS 89
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 49.1 bits (117), Expect = 1e-08
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 1 MKISVKVL--QGQEIFLDVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQI 56
+ + VK + +++ L + S+ LK ++ + DQ+L+ +G+ LLD + +
Sbjct: 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67
Query: 57 LDY-PQIKEGTKLNLVVK 73
D P+ ++ L+LV
Sbjct: 68 RDLLPKQEKRHVLHLVCN 85
Score = 42.9 bits (101), Expect = 2e-06
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 107 TQSNKIADEFIKVNSEMSILELKNKINEAL--KIPVSDQKLLATGRPLLDTKQILDY-PQ 163
+ + + D + + S+ LK ++ + DQ+L+ +G+ LLD + + D P+
Sbjct: 14 SPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPK 73
Query: 164 IKEGTKLNLVVK 175
++ L+LV
Sbjct: 74 QEKRHVLHLVCN 85
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 48.8 bits (116), Expect = 2e-08
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ G+++ + N++ +I +LK I + L D + DY
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY- 87
Query: 61 QIKEGTKLNLV 71
+I +G L L
Sbjct: 88 EIHDGMNLELY 98
Score = 37.7 bits (87), Expect = 1e-04
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLV 173
+K N++ +I +LK I + L D + DY +I +G L L
Sbjct: 43 VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY-EIHDGMNLELY 98
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 48.8 bits (116), Expect = 2e-08
Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+ + ++ + ++ L+ ++ EL++KI E + + K++ + L K + +
Sbjct: 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ- 78
Query: 61 QIKEGTKLNLVVKRALKESSQSVAG 85
+ K ++ LK+SS +G
Sbjct: 79 GVAHNVKAMVLE---LKQSSGPSSG 100
Score = 38.8 bits (90), Expect = 6e-05
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKR 176
++ ++ EL++KI E + + K++ + L K + + + K ++
Sbjct: 34 LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ-GVAHNVKAMVLE-- 90
Query: 177 ALKESSQSVAG 187
LK+SS +G
Sbjct: 91 -LKQSSGPSSG 100
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 73
Score = 45.4 bits (107), Expect = 1e-07
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+++ V G+++ + +E S+ + K ++ + + L G L D + DY
Sbjct: 2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY- 60
Query: 61 QIKEGTKLNL 70
++ + T L L
Sbjct: 61 EVHDQTNLEL 70
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 46.0 bits (109), Expect = 2e-07
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 3 ISVKVLQGQE-IFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
+ + + + + IF D ++ ELK + LK P +Q+L + L D K + +
Sbjct: 2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 59
Score = 38.7 bits (90), Expect = 7e-05
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 116 FIKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 161
F ++ ELK + LK P +Q+L + L D K + +
Sbjct: 14 FTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 59
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 46.5 bits (110), Expect = 2e-07
Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALK--------IPVSDQKLLATGRPLLD 52
+ + + ++ G+ + S ++ + + + +L+ GR L
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76
Query: 53 TKQILDYPQIKEG--TKLNLVVKRALKESSQS 82
+ ++ G T ++LV + L E +
Sbjct: 77 NVTLGAL-KLPFGKTTVMHLVARETLPEPNSQ 107
Score = 32.6 bits (74), Expect = 0.011
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 117 IKVNSEMSILELKNKINEALK--------IPVSDQKLLATGRPLLDTKQILDYPQIKEG- 167
+ S ++ + + + +L+ GR L + ++ G
Sbjct: 31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLPFGK 89
Query: 168 -TKLNLVVKRALKESSQS 184
T ++LV + L E +
Sbjct: 90 TTVMHLVARETLPEPNSQ 107
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 1 MKISVKVL-QGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 59
+ +K++ + + V + + ELK KI+ +P + + + + K + +
Sbjct: 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPP-AMQKVMYKGLVPEDKTLREI 74
Query: 60 PQIKEGTKLNLVVKRALKESS 80
+ G K+ +V SS
Sbjct: 75 K-VTSGAKIMVVGSTISGPSS 94
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 40.8 bits (95), Expect = 1e-05
Identities = 8/74 (10%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
++VK + + +++N++ + K ++ L ++ + L +
Sbjct: 8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFA-LTGVQPARQKVMVKGGTLKDDDWGNI- 65
Query: 61 QIKEGTKLNLVVKR 74
++K G + ++
Sbjct: 66 KMKNGMTVLMMGSA 79
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 39.3 bits (92), Expect = 3e-05
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDYP 60
+K+ V EI V + +LK + +P++ + L G+ + D +
Sbjct: 3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL- 61
Query: 61 QIKEGTKLNLVVKR 74
++E + + ++
Sbjct: 62 GMEEEDVIEVYQEQ 75
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 38.3 bits (89), Expect = 8e-05
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGR------PLLDTKQILDYPQIKEGTKL 170
K + MS+ +LK K+ + V ++ L D + L +++G ++
Sbjct: 20 KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 79
Query: 171 NLVVKR 176
+ V
Sbjct: 80 HAVDVT 85
Score = 36.4 bits (84), Expect = 4e-04
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 8 LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGR------PLLDTKQILDYPQ 61
+ + MS+ +LK K+ + V ++ L D + L
Sbjct: 13 ATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLG 72
Query: 62 IKEGTKLNLVVKR 74
+++G +++ V
Sbjct: 73 VRDGYRIHAVDVT 85
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 36.8 bits (85), Expect = 3e-04
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 2 KISVKVLQGQEIFLDVNSEMSILELKNKINEALK--IPVSD-QKLLATGRPLLDTKQILD 58
K +++ + + + SI LK I L+ +P + L+ GR L D + +
Sbjct: 20 KSILQLPETELGEYSLGGY-SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDF 78
Query: 59 YPQIKEGTKLNLVVK 73
Y I+ G+ ++++ K
Sbjct: 79 Y-GIQPGSTVHVLRK 92
Score = 36.0 bits (83), Expect = 6e-04
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 124 SILELKNKINEALK--IPVSD-QKLLATGRPLLDTKQILDYPQIKEGTKLNLVVK 175
SI LK I L+ +P + L+ GR L D + + Y I+ G+ ++++ K
Sbjct: 39 SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY-GIQPGSTVHVLRK 92
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 36.1 bits (83), Expect = 5e-04
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 1 MKISVKV-----LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQ 55
+++K+ + Q + + M++ ++K ++ LK+PVS+ L + +
Sbjct: 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67
Query: 56 ILDY 59
L+
Sbjct: 68 ELEN 71
Score = 32.6 bits (74), Expect = 0.009
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILDY 161
++ M++ ++K ++ LK+PVS+ L + + L+
Sbjct: 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELEN 71
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 35.7 bits (82), Expect = 7e-04
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 1 MKISVKV-LQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRP------LLDT 53
+ + + L + ++I E K K+ + P S +L G L
Sbjct: 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67
Query: 54 KQILDYPQIKEGTKLNLVVKRALKESS 80
+L + +G +++++ SS
Sbjct: 68 DALLGSYPVDDGCRIHVIDHSGSGPSS 94
Score = 35.7 bits (82), Expect = 7e-04
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 117 IKVNSEMSILELKNKINEALKIPVSDQKLLATGRP------LLDTKQILDYPQIKEGTKL 170
+ + ++I E K K+ + P S +L G L +L + +G ++
Sbjct: 23 KRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI 82
Query: 171 NLVVKRALKESS 182
+++ SS
Sbjct: 83 HVIDHSGSGPSS 94
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 35.0 bits (80), Expect = 0.002
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 1 MKISVKVLQ-GQEIFLDVNSE-MSILELKNKINEALKIPVSDQKLLATGRPLLDTKQILD 58
+++S GQ + + V S ++ LK KI ++IP + QKL L D +
Sbjct: 30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89
Query: 59 YPQIKEGTKLNLVVK 73
Y + G L L ++
Sbjct: 90 Y-NVGAGEILTLSLR 103
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 94
Score = 29.5 bits (66), Expect = 0.096
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 18 NSEMSILELKNKINEALKIPVSDQKL 43
+++ +LK I + L+IP+ +Q L
Sbjct: 18 GPHITVSQLKTLIQDQLQIPIHNQTL 43
Score = 29.5 bits (66), Expect = 0.096
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 120 NSEMSILELKNKINEALKIPVSDQKL 145
+++ +LK I + L+IP+ +Q L
Sbjct: 18 GPHITVSQLKTLIQDQLQIPIHNQTL 43
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 27.1 bits (59), Expect = 2.3
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 36 IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDA 95
V+ ++ + + + ++ G + + K+A + + G V ++ D
Sbjct: 315 AEVTLEEAMEAVVEVARSDGLV--IGPSGGAAVKALAKKAAEGD---LEPGDYVVVVPDT 369
Query: 96 SYKFLRKYF 104
+K+L
Sbjct: 370 GFKYLSLVQ 378
Score = 27.1 bits (59), Expect = 2.3
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 138 IPVSDQKLLATGRPLLDTKQILDYPQIKEGTKLNLVVKRALKESSQSVAGGSNVTILRDA 197
V+ ++ + + + ++ G + + K+A + + G V ++ D
Sbjct: 315 AEVTLEEAMEAVVEVARSDGLV--IGPSGGAAVKALAKKAAEGD---LEPGDYVVVVPDT 369
Query: 198 SYKFLRKYF 206
+K+L
Sbjct: 370 GFKYLSLVQ 378
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 23.9 bits (52), Expect = 5.9
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 1 MKISVKVLQGQEIFLDVNSEMSILELKNKINEALKIPVSDQKLLATGRPLLDTK 54
+ + V G + + + +L E + + + G+P+ +T
Sbjct: 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD 55
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 25.4 bits (56), Expect = 7.4
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 188 GSNVTILRDASYKFLRKYFTETQSNKIADEFIKEFNKSIST 228
GS++ IL + + F+ + + E + + + I
Sbjct: 1 GSHMEILWNEAKAFIAECYQELGKEEEVKDRLDSIKSEIDR 41
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 25.2 bits (54), Expect = 7.7
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 177 ALKESSQSVAGGSNVTILRDASYKFLRK--------YFTETQSNKIADEFIKEFNKS 225
+K++ T++ + F+RK YFT Q+ K + E +K+
Sbjct: 229 VMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAGDWKNYFTVAQNEKFDAIYETEMSKT 285
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.336
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 839,813
Number of extensions: 37535
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 78
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)