RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1977
(764 letters)
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 733 bits (1894), Expect = 0.0
Identities = 267/662 (40%), Positives = 384/662 (58%), Gaps = 55/662 (8%)
Query: 105 VDPCDDFYRFSCGKFLKETQIPDDKTAQTAFSVISDALEEQLRTIVEEPIRE--NEPKPF 162
VDPCDDFY+++CG +LK IP DK++ +FS + + +EE+L+ I+EE E ++
Sbjct: 1 VDPCDDFYQYACGNWLKNHPIPADKSSYGSFSELREKVEERLKEILEEAAAEKASDSSAE 60
Query: 163 KLVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQNWNEETFSWKDSVYKFHENG 222
+ +K+ Y++CM+ + IE LGL+P+
Sbjct: 61 QKIKDFYRSCMDTEAIEALGLKPLL----------------------------------- 85
Query: 223 YSVDYFIDFSIVINVKNNSERIIDLDQATLGL-SREYLVKGINEKLVNAYYRYMIDIAVL 281
+ ++KN+S I+ LDQ LGL R+Y + ++K+ AY Y+ + VL
Sbjct: 86 ---PLLFGLGVSPDLKNSSRNILYLDQPGLGLPDRDYYLDEKSKKIRAAYKAYLAKLLVL 142
Query: 282 LGADKDVATEELKESLEFEIKLANISLPLEQRRNATKLYNPMSLDELQTKFPSIPWVEYL 341
G D++ A +E L FE +LA IS E+RR+ K YNPM+L ELQ P I W YL
Sbjct: 143 AGEDEEDAEALAEEVLAFETELAKISWSEEERRDPEKTYNPMTLAELQKLAPGIDWKAYL 202
Query: 342 NTLLYPKDRLRETDIVVVDVPNYISKLEELLQTTPKKVQANYALWRATAASVSYLTEAIR 401
L P + + V+V P+Y+ KL +LL +TP + NY +WR + YL+E R
Sbjct: 203 EALGLPSE----DEKVIVTQPDYLKKLNKLLASTPLRTLKNYLIWRLLDSLAPYLSEEFR 258
Query: 402 NRQLQYSTALSGRTQMEPRWKECVDTVSSSISLAMGALYVRKFFKEDAKANAIEMVELIR 461
+ Y LSG + PRWK CV V+ + A+G LYVRK+F +AKA E+VE ++
Sbjct: 259 DANFFYGKTLSGTKEQRPRWKRCVSLVNGLLGEALGRLYVRKYFPPEAKARVEELVENLK 318
Query: 462 EEMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYPDELLDDNKISEFYDKLEIDPNNYYK 521
+ + L ++WMD +T++KALEK AMT I YPD+ D +K+ YD L ++Y+
Sbjct: 319 KAFRERLENLDWMDEETKKKALEKLDAMTVKIGYPDKWRDYSKLDIDYDDL----DSYFG 374
Query: 522 SILNLTKFGTGYSFSLLRKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQGSFFSN 581
++L L +F + + L KPV++TEW P VNA+Y+ +N I FPAGILQ FF
Sbjct: 375 NVLRLRRFELERNLAKLGKPVDRTEW--GMTPQTVNAYYNPTQNEIVFPAGILQPPFFDP 432
Query: 582 DRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGNLVDWWQEDTKRSYIEKARCIIEQYG 641
D P +N+G IG VIGHEITHGFDDQGRQFD++GNL +WW + ++++ E+ +C+++QY
Sbjct: 433 DAPDAVNYGGIGAVIGHEITHGFDDQGRQFDEDGNLRNWWTPEDRKAFEERTQCLVDQYS 492
Query: 642 NYSVPEVNLTLNGVNNQGENIADNGGMKEAYNAYVNWAATHPAEPRLPGLQNFTPQQMFW 701
NY VP L +NG GENIAD GG++ AY+AY W AE LP FTP Q+F+
Sbjct: 493 NYEVPP-GLHVNGKLTLGENIADLGGLRLAYDAYKKWLKGKGAE--LPPGDGFTPDQLFF 549
Query: 702 ISAASTWCSKHRPETLKLRITTGFHSPGEFRVLGPVSNLESFSRDFQCPSGSR-MNPVHK 760
+S A WCSK+RPE L+ + T HSPG+FRV G +SN F+ F CP G MNP +
Sbjct: 550 LSFAQVWCSKYRPEALRQLLLTDPHSPGKFRVNGVLSNSPEFAEAFNCPPGDPYMNPEKR 609
Query: 761 CK 762
C+
Sbjct: 610 CR 611
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 421 bits (1083), Expect = e-137
Identities = 209/684 (30%), Positives = 323/684 (47%), Gaps = 47/684 (6%)
Query: 93 TASNLLKNMDLNVDPCDDFYRFSCGKFLKETQIPDDKTAQTAFSVISDALEEQLRTIVEE 152
T+ L +MD P DD Y + G++LK +IP D++ AF + D E +R I+E
Sbjct: 6 TSGFDLSHMDAMTRPQDDLYGYVNGEWLKTAEIPADRSRDGAFDKLDDRAEALVRDIIEA 65
Query: 153 PI-RENEPKPFKLVK--NLYKACMNVKNIEILGLEPMK---RMLQDLGGWPVLEGQNWNE 206
E P+ L + LY++ M+ E G++P+K + L +
Sbjct: 66 AAANEQAPEDAILQRIGKLYRSFMDEAKREKAGVDPLKPELAEIDSLA----------SF 115
Query: 207 ETFSWKDSVYKFHENGYSVDYFIDFSIVINVKNNSERIIDLDQATLGL-SREYLVKGINE 265
F+ + FS+ + K+++ ++ Q+ LGL Y +
Sbjct: 116 SDFAAALGQLERA----GQGNPFGFSVSPDFKDSTRYVLYFSQSGLGLPDTTYYRDEQHA 171
Query: 266 KLVNAYYRYMIDIAVLLGADKDV--ATEELKESLEFEIKLANISLPLEQRRNATKLYNPM 323
+L+ AY ++ + L G ++ A + + E KLAN S + + R+ YNP
Sbjct: 172 ELLAAYKEHVARMLGLFGFSEEEEDAAKHALRVVALETKLANASWEVVKYRDLYHTYNPA 231
Query: 324 SLDELQTKFPSIPWVEYLNTLLYPKDRLRETDIVVVDVPNYISKLEELLQTTPKKVQANY 383
+ ELQ + P W + L D+ ++VV+ P Y+ + LL +
Sbjct: 232 TFAELQPELPGDDWSLLFSALGQLPDK-----VIVVENPFYLKEFASLLAEENWADWKAW 286
Query: 384 ALWRATAASVSYLTEAIRNRQLQ-YSTALSGRTQMEPRWKECVDTVSSSISLAMGALYVR 442
W+ A+ YLTE + + Y LSG+ + RWK V+ A+G LYV+
Sbjct: 287 LRWKLIRAAAPYLTEDLVDEHFDFYGRTLSGQPEARDRWKRAVNLAERLFGEAIGLLYVK 346
Query: 443 KFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYPDELLDD 502
++F +AKA+ E+V + + ++ ++WM +TR KALEK TA I YPD
Sbjct: 347 RYFPPEAKADMEELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDPWRY- 405
Query: 503 NKISEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRKPVNKTEWISHGHPALVNAFYSS 562
Y KLEI ++ Y ++L + F + S + KPV++ EW P VNA+Y+
Sbjct: 406 ------YSKLEIKRDSLYGNVLRASAFNHAHELSKIGKPVDRDEW--EMPPQTVNAYYNP 457
Query: 563 IENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGNLVDWWQ 622
+N I FPA ILQ FF + N+G IG VIGHEI HGFDDQG +FD +GNL DWW
Sbjct: 458 QKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDWWT 517
Query: 623 EDTKRSYIEKARCIIEQYGNYSVPEVNLTLNGVNNQGENIADNGGMKEAYNAYVNWAATH 682
++ ++ E+ + ++ Q+ Y PE GENIAD GG+ A +AY
Sbjct: 518 DEDAAAFKERTKKLVAQFDGY-EPEGGKDNGNALTVGENIADLGGLAIALDAYKLSLDPA 576
Query: 683 PAEPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKLRITTGFHSPGEFRVLGPVSNLES 742
P + FT Q F+++ A W K RPE ++R++ HSP EFRV GPV N++
Sbjct: 577 PV------IDGFTGLQRFFLNWAQIWRMKARPEEQQMRLSVDPHSPAEFRVNGPVRNMDE 630
Query: 743 FSRDFQCPSGSRM--NPVHKCKVW 764
F F G M P + +W
Sbjct: 631 FYEAFDVKEGDAMYRAPEERVVIW 654
>gnl|CDD|218676 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 peptidases
are well-studied proteases found in a wide range of
organisms including mammals and bacteria. In mammals
they participate in processes such as cardiovascular
development, blood-pressure regulation, nervous control
of respiration, and regulation of the function of
neuropeptides in the central nervous system. In bacteria
they may be used for digestion of milk.
Length = 380
Score = 367 bits (944), Expect = e-121
Identities = 146/394 (37%), Positives = 217/394 (55%), Gaps = 19/394 (4%)
Query: 108 CDDFYRFSCGKFLKETQIPDDKTAQTAFSVISDALEEQLRTIVEEP-IRENEPKPFKLVK 166
CDDFY+++CG +LK T IP D+++ FS + D +E+QLR I+EE E + + K
Sbjct: 1 CDDFYQYACGGWLKNTPIPADRSSYGTFSELRDKIEKQLRAILEEAASGEADSSNERKAK 60
Query: 167 NLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQNWNEETFSWKDSVYKFHENGYSVD 226
+LY++CM+ IE LGL+P+K +L+ +G + F D++ K G S
Sbjct: 61 DLYRSCMDTDAIEKLGLKPLKPLLKKIGAI---------KSKFDLADALAKLERGG-SNG 110
Query: 227 YFIDFSIVINVKNNSERIIDLDQATLGLSREYLVK---GINEKLVNAYYRYMIDIAVLLG 283
F + + KN+S I+ L Q LGL +EK+ AY +Y+ + L G
Sbjct: 111 PLFGFGVSPDFKNSSRNILYLSQGGLGLPDRDYYLKDDAKSEKIREAYKKYIAKLLKLAG 170
Query: 284 ADKDVATEELKESLEFEIKLANISLPLEQRRNATKLYNPMSLDELQTKFPSIPWVEYLNT 343
D+D A + ++ + FE KLA S E+ R+ KLYNPM+L ELQ P + W YL+
Sbjct: 171 LDEDEAEKAAEDVVAFETKLAKASWSREELRDPAKLYNPMTLAELQALAPGLDWKRYLSA 230
Query: 344 LLYPKDRLRETDIVVVDVPNYISKLEELLQTTPKKVQANYALWRATAASVSYLTEAIRNR 403
L PKD D V+V P+Y+ L +LL TP + NY +W+ + YL+E R+
Sbjct: 231 LGLPKD----PDEVIVSQPDYLKALNKLLAETPLETLKNYLIWKLIDSFAPYLSEEFRDA 286
Query: 404 QLQ-YSTALSGRTQMEPRWKECVDTVSSSISLAMGALYVRKFFKEDAKANAIEMVELIRE 462
+ Y LSG + PRWK CV V+ + A+G LYV K+F +AKA+ EMV+ I++
Sbjct: 287 NFEFYGKTLSGTKEQRPRWKRCVSLVNGLLGEALGRLYVEKYFPPEAKADVEEMVKNIKK 346
Query: 463 EMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYP 496
+ L ++WM +T++KALEK AMT I YP
Sbjct: 347 AFRERLEELDWMSEETKKKALEKLDAMTVKIGYP 380
>gnl|CDD|216499 pfam01431, Peptidase_M13, Peptidase family M13. Mammalian enzymes
are typically type-II membrane anchored enzymes which
are known, or believed to activate or inactivate
oligopeptide (pro)-hormones such as opioid peptides. The
family also contains a bacterial member believed to be
involved with milk protein cleavage.
Length = 206
Score = 224 bits (572), Expect = 1e-68
Identities = 94/209 (44%), Positives = 126/209 (60%), Gaps = 5/209 (2%)
Query: 557 NAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGN 616
NA+Y+ N +TFPAGIL FF++ P +N+G IGFV+GHEI HGFDDQG QFDK+GN
Sbjct: 1 NAYYNPGFNYLTFPAGILVPPFFNDLYPPAVNYGGIGFVLGHEIMHGFDDQGIQFDKDGN 60
Query: 617 LVDWWQEDTKRSYIEKARCIIEQYGNYSVP--EVNLTLNGVNNQGENIADNGGMKEAYNA 674
L WW ++ + + + A+C+I+QY Y P NG GENIAD GG++ A A
Sbjct: 61 LCGWWTDEDEAEFKDAAQCLIDQYDEYGDPDAVKPDCWNGATTFGENIADLGGLRIALKA 120
Query: 675 YVNWAATHPAEPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKLRITTGFHSPGEFRVL 734
Y +A E RLPGL+N TP Q+F+ + A +WC K RP+ ++ HSP E RV
Sbjct: 121 YAKKSAN---EQRLPGLENLTPDQLFFETYAQSWCRKSRPKNSLTQLLVDPHSPLELRVN 177
Query: 735 GPVSNLESFSRDFQCPSGSRMNPVHKCKV 763
G V N+ +F F C G RM P + +
Sbjct: 178 GAVRNMPAFYSAFNCKPGDRMFPKPEKRC 206
>gnl|CDD|189001 cd09594, GluZincin, Peptidase Gluzincin family (thermolysin-like
proteinases, TLPs) includes peptidases M1, M2, M3, M4,
M13, M32 and M36 (fungalysins). Gluzincin family
(thermolysin-like peptidases or TLPs) includes several
zinc-dependent metallopeptidases such as the M1, M2, M3,
M4, M13, M32, M36 peptidases (MEROPS classification),
and contain HEXXH and EXXXD motifs as part of their
active site. All peptidases in this family bind a single
catalytic zinc ion which is tetrahedrally co-ordinated
by three amino acid ligands and a water molecule that
forms the nucleophile on activation during catalysis. M1
family includes aminopeptidase N (APN) and leukotriene
A4 hydrolase (LTA4H). APN preferentially cleaves
neutral amino acids from the N-terminus of oligopeptides
and is present in a variety of human tissues and cell
types. LTA4H is a bifunctional enzyme, possessing an
aminopeptidase as well as an epoxide hydrolase activity
such that the two activities occupy different, but
overlapping sites. The peptidase M3 or neurolysin-like
family, includes M3, M2 and M32 metallopeptidases. The
M3 peptidases have two subfamilies: M3A, includes thimet
oligopeptidase (TOP; endopeptidase 3.4.24.15),
neurolysin (3.4.24.16), and the mitochondrial
intermediate peptidase; M3B contains oligopeptidase F.
M2 peptidase angiotensin converting enzyme (ACE, EC
3.4.15.1) catalyzes the conversion of decapeptide
angiotensin I to the potent vasopressor octapeptide
angiotensin II. ACE is a key part of the
renin-angiotensin system that regulates blood pressure,
thus ACE inhibitors are important for the treatment of
hypertension. M32 family includes two eukaryotic enzymes
from protozoa Trypanosoma cruzi, a causative agent of
Chagas' disease, and Leishmania major, a parasite that
causes leishmaniasis, making them attractive targets for
drug development. The M4 family includes secreted
protease thermolysin (EC 3.4.24.27), pseudolysin,
aureolysin, neutral protease as well as fungalysin and
bacillolysin (EC 3.4.24.28) that degrade extracellular
proteins and peptides for bacterial nutrition,
especially prior to sporulation. Thermolysin is widely
used as a nonspecific protease to obtain fragments for
peptide sequencing as well as in production of the
artificial sweetener aspartame. M13 family includes
neprilysin (EC 3.4.24.11) and endothelin-converting
enzyme I (ECE-1, EC 3.4.24.71), which fulfill a broad
range of physiological roles due to the greater
variation in the S2' subsite allowing substrate
specificity and are prime therapeutic targets for
selective inhibition. Peptidase M36 (fungamysin) family
includes endopeptidases from pathogenic fungi.
Fungalysin hydrolyzes extracellular matrix proteins such
as elastin and keratin. Aspergillus fumigatus causes the
pulmonary disease aspergillosis by invading the lungs of
immuno-compromised animals and secreting fungalysin that
possibly breaks down proteinaceous structural barriers.
Length = 125
Score = 44.8 bits (106), Expect = 1e-05
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 20/108 (18%)
Query: 519 YYKSILNLTKFGTGYS--FSLLRKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQG 576
Y+S+ K +S++ P + NA + ++ I GIL
Sbjct: 11 IYESLGGRNKTDEVGGGYYSMVYPP--------SNQGKVNNAMCNGLDARIVMNDGILVA 62
Query: 577 SFFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGNLVDWWQED 624
++ V+GHE+THG DQ D + L
Sbjct: 63 ---------FLLDSDDFGVVGHELTHGVTDQLVGNDPDL-LYTNGSGG 100
>gnl|CDD|239143 cd02680, MIT_calpain7_2, MIT: domain contained within Microtubule
Interacting and Trafficking molecules. This sub-family
of MIT domains is found in the nuclear thiol protease
PalBH. The molecular function of the MIT domain is
unclear.
Length = 75
Score = 33.0 bits (75), Expect = 0.057
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 441 VRKFFKEDAKANAIEMVELIREEMNKILNTV-EWMD----NKTR---RKALEKAKAMTAH 492
V + F ED K NA E +EL E + +NT E MD K + R+AL++A+A+
Sbjct: 10 VTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLARQALDRAEALKES 69
Query: 493 IAYP 496
++
Sbjct: 70 MSKA 73
>gnl|CDD|222472 pfam13954, PapC_N, PapC N-terminal domain. The PapC N-terminal
domain is a structural domain found at the N-terminus of
the E. coli PapC protein. Pili are assembled using the
chaperone usher system. In E.coli this is composed of
the chaperone PapD and the usher PapC. This domain
represents the N-terminal domain from PapC and its
homologues. This domain is involved in substrate
binding.
Length = 145
Score = 31.9 bits (73), Expect = 0.57
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 63 NNDLIGGSKVNQITNGDNKPKICFTEGCVHTASNLLKNMDLNVDPCDDFYRFSCGKFLKE 122
N + G +N D+ C T LL + +N++ + + +
Sbjct: 38 NGEKKGSQDINFTAGDDSGLVPCLTPE-------LLSKLGINIEAFPALQQSNDEQCYDL 90
Query: 123 TQIPD 127
++IP
Sbjct: 91 SKIPG 95
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 33.1 bits (77), Expect = 0.73
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 455 EMVELIREEMNKILNTVEWMDNKTRRKALE--KAKAMTAHIAYPDELLDDNKISEFYDKL 512
+ EL ++ + D + R AL+ K + + A A +E D+ +I E + KL
Sbjct: 244 AVKELAEAKLKEAYQI---TDKQEREAALDAIKEEVLEALAAEEEEEEDEKEIKEAFKKL 300
Query: 513 E 513
E
Sbjct: 301 E 301
>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain
found in the Axin protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
Axin protein. Axin is a member of the RA/RGS subfamily
of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins
regulate many aspects of embryonic development such as
glial differentiation, embryonic axis formation, and
skeletal and muscle development. The RGS domain of Axin
is specifically interacts with the heterotrimeric
G-alpha12 protein, but not with closely related
G-alpha13, and provides a unique tool to regulate
G-alpha12-mediated signaling processes. The RGS domain
of Axin also interacts with the tumor suppressor protein
APC (Adenomatous Polyposis Coli) in order to control the
cytoplasmic level of the proto-oncogene, beta-catenin.
Length = 117
Score = 30.5 bits (69), Expect = 0.96
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 110 DFYRFSCGKFLKETQIPDDKTAQTA----------FSVISDALEEQLRTIVEEPIRENEP 159
DF+ F+C F K + ++K ++ A ++S L+ ++ ++E I++ +
Sbjct: 28 DFW-FACNGFRKMSD-SEEKRSKLAKAIYRRYIKDNGIVSRQLKPATKSFIKECIKKQQL 85
Query: 160 KP 161
P
Sbjct: 86 DP 87
>gnl|CDD|226532 COG4046, COG4046, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 368
Score = 32.0 bits (73), Expect = 1.3
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 425 VDTVSSSISLAMGALYVRKFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALE 484
I +G +V F NA V L + L +E M+N +K +E
Sbjct: 6 QAYSPFWILDILGIAFVLLFILLLPGMNARVQVSLFSRYIEGALAELEKMENDAMKKVVE 65
Query: 485 KAKAMTAHIAYPDELLDDNKISEFY--DKLEIDPNNY---YKSILNL 526
A + L+ +EF+ ++IDP + +L +
Sbjct: 66 LAVPRRDE---AESTLER--YAEFFVIPPVDIDPAGIIDRLRHLLEM 107
>gnl|CDD|239164 cd02763, MopB_2, The MopB_2 CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative N-terminal
iron-sulfur [4Fe-4S] cluster binding site and
molybdopterin cofactor binding site. These members
belong to the molybdopterin_binding (MopB) superfamily
of proteins.
Length = 679
Score = 32.1 bits (73), Expect = 1.4
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 17/85 (20%)
Query: 657 NQGENIADNGG------------MKEAYNAYVNWAATHP----AEPRLPGLQNFTPQQMF 700
NQ E A N G + Y+ WA +P + L + Q F
Sbjct: 585 NQLEQYAKNNGFFHYPLPEHMRYYRNVNKDYLEWAVRVGFVKFTDPIIMQLYS-EVLQKF 643
Query: 701 WISAASTWCSKHRPETLKLRITTGF 725
++ W + PE L+ R+ T F
Sbjct: 644 RLAGQGLWEGEQPPEALRERVETYF 668
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 31.9 bits (72), Expect = 1.4
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 56 YSRLNLNNNDLIGGSKVNQITNGDNKPKICFTEGCVHTASNLL---KNMDLNVDPCDDFY 112
+ R + N + + Q+TN D IC + H L +M PC
Sbjct: 264 FRRATKDLNAMYPTATEEQLTNSDRTCTICM-DEMFHPDHEPLPRGLDMTPKRLPCGHIL 322
Query: 113 RFSCGKFLKETQ 124
C K E Q
Sbjct: 323 HLHCLKNWLERQ 334
>gnl|CDD|189004 cd09597, M4_neutral_protease, Peptidase M4 family includes
thermolysin, protealysin, aureolysin and neutral
protease. This peptidase M4 family includes several
endopeptidases such as thermolysin (EC 3.4.24.27),
aureolysin (the extracellular metalloproteinase from
Staphylococcus aureus), neutral protease from Bacillus
cereus and protealysin. These enzymes have a two-domain
structure with the active site between the domains. The
N-terminal domain contains the HEXXH zinc-binding motif
while the helical C-terminal domain, which is unique for
the family, carries the third zinc ligand. Most of these
secreted proteases degrade extracellular proteins and
peptides for bacterial nutrition, especially prior to
sporulation. They have N-terminal propeptides that
assist in folding and are removed autocatalytically.
Thermolysin is widely used as a nonspecific protease to
obtain fragments for peptide sequencing. It has also
been used in production of the artificial sweetener
aspartame.
Length = 280
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 16/54 (29%)
Query: 556 VNAFYSSIENSITF--PAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDDQ 607
NAF+ + + F G S D V+ HE+THG +
Sbjct: 78 DNAFWDG--SQMVFGDGDGTTFPFTVSLD------------VVAHELTHGVTEY 117
>gnl|CDD|188992 cd02699, M4, Peptidase M4 family includes thermolysin, pseudolysin,
aureolysin, neutral protease and bacillolysin. M4
Peptidase family belong to the Glu-zincins family and
includes numerous zinc-dependent metallopeptidases that
hydrolyze peptide bonds such as thermolysin (EC
3.4.24.27), pseudolysin (the extracellullar elastase of
Pseudomonas aeruginosa), aureolysin (the extracellular
metalloproteinase from Staphylococcus aureus), neutral
protease from Bacillus cereus as well as fungalysin
(from Aspergillus fumigates) and bacillolysin (EC
3.4.24.28). Typically, the M4 peptidases consist of a
presequence (signal sequence), a propeptide sequence and
a peptidase unit. The presequence is cleaved off during
export while the propeptide has inhibitory and chaperone
functions and facilitates folding. The propeptide
remains attached until the peptidase is secreted and can
be safely activated. All peptidases in this family bind
a single catalytic zinc ion which is tetrahedrally
co-ordinated by three amino acid ligands and a water
molecule that forms the nucleophile on activation during
catalysis. These peptidases are secreted eubacterial
endopeptidases from Gram-positive or Gram-negative
sources that degrade extracellular proteins and peptides
for bacterial nutrition. They contain HEXXH and EXXXD
motifs as part of their active site and are selectively
inhibited by Steptomyces metalloproteinase inhibitor
(SMPI) as well as by phosphoramidon from Streptomyces
tanashiensis. A large number of these enzymes are
implicated as key factors in the pathogenesis of various
diseases, including gastritis, peptic ulcer, gastric
carcinoma, cholera and several types of bacterial
infections, and are therefore important drug targets.
Some enzymes of the family can function at extremes of
temperatures, while some function in organic solvents,
thus rendering them novel targets for biotechnological
applications.
Length = 230
Score = 30.8 bits (70), Expect = 2.1
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 11/35 (31%)
Query: 584 PKYMNFG---AIGF--------VIGHEITHGFDDQ 607
M FG F V+ HE+THG D
Sbjct: 86 GSQMVFGDGDGSTFTPFAVSLDVVAHELTHGVTDS 120
>gnl|CDD|218090 pfam04450, BSP, Peptidase of plants and bacteria. These basic
secretory proteins (BSPs) are believed to be part of the
plants defence mechanism against pathogens.
Length = 203
Score = 30.3 bits (69), Expect = 2.9
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 564 ENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGF--DDQGRQF 611
I A ++GS ND K + V+ HE+ H + D GR
Sbjct: 73 HKEIHLSARYIEGSSAENDDVKD----EVTGVLYHELVHVWQWDGTGRAP 118
>gnl|CDD|182944 PRK11070, PRK11070, ssDNA exonuclease RecJ; Provisional.
Length = 575
Score = 30.8 bits (70), Expect = 3.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 180 ILGLEPMKRMLQDLGGWPVLEGQNWNEETFSWKDSVYKFHENGYSVD 226
++G +K M++ +GG P+L+G +N +T W D+ + E Y +D
Sbjct: 509 LVGERHLKVMVEPVGGGPLLDGIAFNVDTTLWPDNSVREVELAYKLD 555
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 30.3 bits (69), Expect = 4.2
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 102 DLNVDPCDDFYRFSCGKFLKETQIPDDKT--AQTAFSVISDALEEQLRTIVEEPIRENEP 159
+ F G + +IP D A+ A + +AL E ++E+ + EP
Sbjct: 175 GVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEP 234
Query: 160 KPFKLVKNLYKACMNVKNIEIL 181
++ K L K + K + +L
Sbjct: 235 TEEEIKKALRKGTIAGKIVPVL 256
>gnl|CDD|224247 COG1328, NrdD, Oxygen-sensitive ribonucleoside-triphosphate
reductase [Nucleotide transport and metabolism].
Length = 700
Score = 30.0 bits (68), Expect = 5.7
Identities = 32/141 (22%), Positives = 45/141 (31%), Gaps = 16/141 (11%)
Query: 388 ATAASVSYLTEAIRNRQLQYSTALSGRTQMEPRWKECVDTVSSSISLAMG-------ALY 440
A L E I L AL GR E ++ISL L
Sbjct: 440 ALLIRRERLKELIAKNALYMVGALGGRLNQEFDGSTIFRNGRATISLGFIGLNEMLKYLT 499
Query: 441 VRKFFK-EDAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYPDEL 499
+ E+AK I++VE IRE +W R ++ + A + A
Sbjct: 500 GEHLHESEEAKKFGIKIVEYIREY------ADKWKKETGLRWSVYQTPAESL--ADRFAR 551
Query: 500 LDDNKISEFYDKLEIDPNNYY 520
LD + E+ YY
Sbjct: 552 LDIFEFGEYKVVRGDTDKPYY 572
>gnl|CDD|239317 cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a
monomeric thiol disulfide oxidoreductase protein
containing a redox active CXXC motif imbedded in a TRX
fold. It is involved in the oxidative protein folding
pathway in prokaryotes, and is the strongest thiol
oxidant known, due to the unusual stability of the
thiolate anion form of the first cysteine in the CXXC
motif. The highly unstable oxidized form of DsbA
directly donates disulfide bonds to reduced proteins
secreted into the bacterial periplasm. This rapid and
unidirectional process helps to catalyze the folding of
newly-synthesized polypeptides. To regain catalytic
activity, reduced DsbA is then reoxidized by the
membrane protein DsbB, which generates its disulfides
from oxidized quinones, which in turn are reoxidized by
the electron transport chain.
Length = 178
Score = 28.8 bits (65), Expect = 6.6
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 597 GHEITHGFDDQGRQFDKNGN----LVDWWQEDTKRSYIEKARCIIEQYGNYSVPEVNLTL 652
+ DD + F G + + ++ + KA + ++Y VP +
Sbjct: 92 KRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAF--VV 149
Query: 653 NG---VNNQGENIADNGGMKEAYNAYVN 677
NG VN + + +
Sbjct: 150 NGKYVVNPSA---IGGDDTLQVLDELIE 174
>gnl|CDD|218638 pfam05559, DUF763, Protein of unknown function (DUF763). This
family consists of several uncharacterized bacterial and
archaeal proteins of unknown function.
Length = 319
Score = 29.2 bits (66), Expect = 7.8
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 448 DAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYPDELLDDNKISE 507
+++ +V+L+RE ++I+ V+ + + M AH + +D ++ +
Sbjct: 200 ESEEARKAIVDLVREGPSRIVREVQ----RALAMFSGRHLIMPAHHEVRELDVDLRRLWK 255
Query: 508 FYDKL-EIDPNNYYKSILNLTKFG 530
E +P + ++ +L L G
Sbjct: 256 VLRAAYERNPED-FEELLLLKGVG 278
>gnl|CDD|216508 pfam01447, Peptidase_M4, Thermolysin metallopeptidase, catalytic
domain.
Length = 150
Score = 28.5 bits (64), Expect = 8.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 595 VIGHEITHGFDDQ 607
V+GHE+THG +Q
Sbjct: 138 VVGHELTHGVTEQ 150
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 29.1 bits (65), Expect = 9.1
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 350 RLRETDIVVVDVPNYISKLEELLQTTP-KKVQANYALWRATAASVSYLTEAIR 401
R E D V+V VP + K L P K +A L + + V E
Sbjct: 245 RTIEADAVIVTVPLGVLKRILFLPPLPAAKQEAIRNLGFGSVSKVFLEFETPF 297
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,041,560
Number of extensions: 3846974
Number of successful extensions: 3932
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3904
Number of HSP's successfully gapped: 39
Length of query: 764
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 660
Effective length of database: 6,324,786
Effective search space: 4174358760
Effective search space used: 4174358760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)