RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1977
(764 letters)
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 855 bits (2211), Expect = 0.0
Identities = 248/699 (35%), Positives = 387/699 (55%), Gaps = 22/699 (3%)
Query: 84 ICFTEGCVHTASNLLKNMDLNVDPCDDFYRFSCGKFLKETQIPDDKTAQTAFSVISDALE 143
IC + C+ +A+ L++NMD +PC DF++++CG +LK IP+ + F ++ D LE
Sbjct: 2 ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELE 61
Query: 144 EQLRTIVEEPIRENEPKPFKLVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQN 203
L+ +++EP + + + K LY++C+N I+ G EP+ ++L D+ GWPV
Sbjct: 62 VVLKDVLQEP-KTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENW 120
Query: 204 WNEETFSWKD-SVYKFHENGYSVDYFIDFSIVINVKNNSERIIDLDQATLGL-SREYLVK 261
+ SW + Y I+ + + KN+ +I +DQ LGL SR+Y
Sbjct: 121 EQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYEC 180
Query: 262 -GINEKLVNAYYRYMIDIAVLL------GADKDVATEELKESLEFEIKLANISLPLEQRR 314
GI ++ AY +MI +A L+ D++ E+ + +E E ++AN + E R
Sbjct: 181 TGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRN 240
Query: 315 NATKLYNPMSLDELQTKF------PSIPWVEYLNTLLYPKDR-LRETDIVVVDVPNYISK 367
+ LYN M+L ++Q F W+ + N ++ + + + VVV P Y++K
Sbjct: 241 DPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTK 300
Query: 368 LEELLQTTPKKVQANYALWRATAASVSYLTEAIRNRQLQYSTALSGRTQMEPRWKECVDT 427
L+ +L + N WR VS L+ + + + AL G T W+ C +
Sbjct: 301 LKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANY 360
Query: 428 VSSSISLAMGALYVRKFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALEKAK 487
V+ ++ A+G LYV F ++K +++ IRE + L+ + WMD +T+++A EKA
Sbjct: 361 VNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKAL 420
Query: 488 AMTAHIAYPDELL-DDNKISEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRKPVNKTE 546
A+ I YPD+++ +DNK++ Y +L + Y+++I+ KF LR+ V+K E
Sbjct: 421 AIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDE 480
Query: 547 WISHGHPALVNAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDD 606
WIS A+VNAFYSS N I FPAGILQ FFS + +N+G IG VIGHEITHGFDD
Sbjct: 481 WIS--GAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDD 538
Query: 607 QGRQFDKNGNLVDWWQEDTKRSYIEKARCIIEQYGNYSVPEV-NLTLNGVNNQGENIADN 665
GR F+K+G+LVDWW + + ++ E+++C++ QYGN+S LNG+N GENIADN
Sbjct: 539 NGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADN 598
Query: 666 GGMKEAYNAYVNWAATHPAEPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKLRITTGF 725
GG+ +AY AY N+ + E LPGL + +Q+F+++ A WC +RPE I T
Sbjct: 599 GGLGQAYRAYQNYIKKNGEEKLLPGL-DLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDV 657
Query: 726 HSPGEFRVLGPVSNLESFSRDFQCPSGSRMNPVHKCKVW 764
HSPG FR++G + N FS F C S MNP KC+VW
Sbjct: 658 HSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 838 bits (2167), Expect = 0.0
Identities = 243/682 (35%), Positives = 393/682 (57%), Gaps = 16/682 (2%)
Query: 87 TEGCVHTASNLLKNMDLNVDPCDDFYRFSCGKFLKETQIPDDKTAQTAFSVISDALEEQL 146
+E CV S++L +MD VDPC DF+ ++CG ++K +PD + FS + + + +
Sbjct: 1 SEACVSVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAII 60
Query: 147 RTIVEEPIRENEPKPFKLVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQNWNE 206
+ ++E + + + + Y+ACMN IE L +P+ +++ LGGW + W +
Sbjct: 61 KHLLENST-ASVSEAERKAQVYYRACMNETRIEELRAKPLMELIERLGGWNITG--PWAK 117
Query: 207 ETFSWKDSVYKFHENGYSVDYFIDFSIVINVKNNSERIIDLDQATLGLSRE--YLVKGIN 264
+ F + Y F + + KN++ +I +DQ+ LGL YL K N
Sbjct: 118 DNFQD---TLQVVTAHYRTSPFFSVYVSADSKNSNSNVIQVDQSGLGLPSRDYYLNKTEN 174
Query: 265 EKLVNAYYRYMIDIAVLLGA-DKDVATEELKESLEFEIKLANISLPLEQRRNATKLYNPM 323
EK++ Y YM+ + LLG D++ ++++ L+FE LANI++P E+RR+ +Y+ +
Sbjct: 175 EKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETALANITIPQEKRRDEELIYHKV 234
Query: 324 SLDELQTKFPSIPWVEYLNTLLYPKDRLRETDIVVVDVPNYISKLEELLQTTPKKVQANY 383
+ ELQT P+I W+ +LNT+ YP + + E++ +VV Y+ ++ L+ TT + + NY
Sbjct: 235 TAAELQTLAPAINWLPFLNTIFYPVE-INESEPIVVYDKEYLEQISTLINTTDRCLLNNY 293
Query: 384 ALWRATAASVSYLTEAIRNRQLQYSTALSGRT-QMEPRWKECVDTVSSSISLAMGALYVR 442
+W + S+L + ++ ++ + G PRWK CV +++ A+G ++V+
Sbjct: 294 MIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGFALGPMFVK 353
Query: 443 KFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYPDELLDD 502
F ED+K+ A E++ I++ + L+T++WMD +TR+ A EKA A+ I YP+ ++D
Sbjct: 354 ATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRKSAKEKADAIYNMIGYPNFIMDP 413
Query: 503 NKISEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRKPVNKTEWISHGHPALVNAFYSS 562
++ + ++ P+ Y+++ + F + LRK N+ +W P +VNA+YS
Sbjct: 414 KELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQWSMT--PPMVNAYYSP 471
Query: 563 IENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGNLVDWWQ 622
+N I FPAGILQ F++ PK +NFG IG V+GHE+TH FDDQGR++DK+GNL WW+
Sbjct: 472 TKNEIVFPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQGREYDKDGNLRPWWK 531
Query: 623 EDTKRSYIEKARCIIEQYGNYSVPEVNLTLNGVNNQGENIADNGGMKEAYNAYVNWAATH 682
+ ++ + C++EQY NYSV +NG + GENIADNGG+K AY AY NW +
Sbjct: 532 NSSVEAFKRQTECMVEQYSNYSVNGEP--VNGRHTLGENIADNGGLKAAYRAYQNWVKKN 589
Query: 683 PAEPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKLRITTGFHSPGEFRVLGPVSNLES 742
AE LP L T Q+F++ A WCS PE+ + T HSP FRV+G +SN +
Sbjct: 590 GAEHSLPTL-GLTNNQLFFLGFAQVWCSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKE 648
Query: 743 FSRDFQCPSGSRMNPVHKCKVW 764
FS F+CP GS MNP HKC+VW
Sbjct: 649 FSEHFRCPPGSPMNPPHKCEVW 670
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 807 bits (2085), Expect = 0.0
Identities = 190/711 (26%), Positives = 321/711 (45%), Gaps = 39/711 (5%)
Query: 66 LIGGSKVNQITNGDNKPKICFTEGCVHTASNLLKNMDLNVDPCDDFYRFSCGKFLKETQI 125
+ GG ++ + D+ FT + L ++D + P DD + G++L E +I
Sbjct: 15 MTGGQQMGRDLYDDDDKDHPFTMTLAIPSGIDLSHIDADARPQDDLFGHVNGRWLAEHEI 74
Query: 126 PDDKTAQTAFSVISDALEEQLRTIVEEPIRENEPKP--FKLVKNLYKACMNVKNIEILGL 183
P D+ AF + D E Q+R ++ + + + + +LY + ++ + +E G+
Sbjct: 75 PADRATDGAFRSLFDRAETQVRDLIIQASQAGAAVGTDAQRIGDLYASFLDEEAVERAGV 134
Query: 184 EPMKRMLQDLGGWPVLEGQNWNEETFSWKDSVYKFHENGYSVDYFIDFSIVINVKNNSER 243
+P+ L + ++ G I + + K+++
Sbjct: 135 QPLHDELATIDSAADAT---------ELAAALGTLQRAGVGG--GIGVYVDTDSKDSTRY 183
Query: 244 IIDLDQATLGL-SREYLVKGINEKLVNAYYRYMIDIAVLL-GADKDVATEELKESLEFEI 301
++ Q+ +GL Y + ++ AY ++ + L+ G + + + E
Sbjct: 184 LVHFTQSGIGLPDESYYRDEQHAAVLAAYPGHIARMFGLVYGGESRDHAKTADRIVALET 243
Query: 302 KLANISLPLEQRRNATKLYNPMSLDELQTKFPSIPWVEYLNTLLYPKDRLRETDIVVVDV 361
KLA+ + +RR+A YN + +LQT+ WV ++ L D +VV
Sbjct: 244 KLADAHWDVVKRRDADLGYNLRTFAQLQTEGAGFDWVSWVTALGSAPD---AMTELVVRQ 300
Query: 362 PNYISKLEELLQTTPKKVQANYALWRATAASVSYLTEAIRNRQLQ-YSTALSGRTQMEPR 420
P+Y+ L + + +A WR A +LT A+ + Y L+G Q+ R
Sbjct: 301 PDYLVTFASLWASVNVEDWKCWARWRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDR 360
Query: 421 WKECVDTVSSSISLAMGALYVRKFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRR 480
WK V V + + A+G LYV++ F DAK+ +V+ ++E ++ ++WM +TR+
Sbjct: 361 WKRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQ 420
Query: 481 KALEKAKAMTAHIAYPDELLDDNKISEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRK 540
+AL K TA + YP + D Y KL ID ++ Y ++ + L
Sbjct: 421 RALAKLNKFTAKVGYPIKWRD-------YSKLAIDRDDLYGNVQRGYAVNHDRELAKLFG 473
Query: 541 PVNKTEWISHGHPALVNAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEI 600
PV++ EW P VNA+Y+ N I FPA ILQ FF + N+G IG VIGHEI
Sbjct: 474 PVDRDEWFMT--PQTVNAYYNPGMNEIVFPAAILQPPFFDPQADEAANYGGIGAVIGHEI 531
Query: 601 THGFDDQGRQFDKNGNLVDWWQEDTKRSYIEKARCIIEQYGNYSVPEV-----NLTLNGV 655
HGFDDQG ++D +GNLVDWW +D + + + + +IEQY Y+ ++ + G
Sbjct: 532 GHGFDDQGAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPHVQGA 591
Query: 656 NNQGENIADNGGMKEAYNAYVNWAATHPAEPRLPGLQNFTPQQMFWISAASTWCSKHRPE 715
GENI D GG+ A AY +PA P + T Q + A W +K R
Sbjct: 592 FTIGENIGDLGGLSIALLAYQLSLNGNPA----PVIDGLTGMQRVFFGWAQIWRTKSRAA 647
Query: 716 TLKLRITTGFHSPGEFRVLGPVSNLESFSRDFQCPSGSRM--NPVHKCKVW 764
R+ HSP EFR G V N+++F + F + +P + ++W
Sbjct: 648 EAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIW 698
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 4e-13
Identities = 93/681 (13%), Positives = 203/681 (29%), Gaps = 196/681 (28%)
Query: 98 LKNMDLNVDPCDDFYR-FSCGKFLKETQIPDDKTAQTAFSVISDALEEQLRTIVEEPIRE 156
+ D+ D F F C + S++S E++ I+
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPK-----------SILSK---EEIDHIIMSKDAV 61
Query: 157 NEPKPFKLVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQNWNEETFSWKDSVY 216
+ L+ + K E++ ++ +++ VL N+ + S
Sbjct: 62 SG------TLRLF-WTLLSKQEEMV-----QKFVEE-----VLR-INYK-----FLMSPI 98
Query: 217 KFHENGYSVDYFIDFSIVINVKNNSERIIDLDQATLGLSREYLVKGINEKLVNAYYRYMI 276
K + S+ + + N+++ + +SR + + L+ R
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLEL--RPAK 151
Query: 277 DIAV--LLGADKDV------ATEELKESLEFEI---KLANISLPLEQRRNATKLYNPM-- 323
++ + +LG+ K + +++ ++F+I L N + P KL +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 324 SLDELQTKFPSIP-----WVEYLNTLLYPKDRLRETDIVVVDV--PNYISKLE---ELLQ 373
+ +I L LL K +V+++V + ++L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 374 TTPKKVQANYALWRATAASVSYLTEAIRNRQLQYSTALSGRTQMEPRWKECVDTVSSSIS 433
TT R +Q+ + LS T T++
Sbjct: 271 TT-------------------------RFKQV--TDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 434 LAMGALYVR-KFFK---EDAKAN--AIEMV-ELIREEMNKILNTVEWMDNKTRRKALEKA 486
++ Y+ + E N + ++ E IR+ + N W L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---W--KHVNCDKLTTI 358
Query: 487 KAMTAHIAYPDELLDDNKISEFYDKLEIDPNN----------------YYKSILNLTKFG 530
+ +L+ + + +D+L + P + ++ + K
Sbjct: 359 IESSL------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL- 411
Query: 531 TGYSFSLL-RKPVNKTEWISHG---------------HPALVNAFYSSIENSITFPAGIL 574
+ +SL+ ++P T I H ++V+ Y+ +
Sbjct: 412 --HKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDH-YNIPKT--------- 458
Query: 575 QGSFFSNDRPKYMNFGAIGFVIGHEITHGFD-DQGRQFDKNGNL-VDWWQEDTKRSYIEK 632
F S+D IGH H + + + + +D+ ++E
Sbjct: 459 ---FDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVFLDF-------RFLE- 504
Query: 633 ARCIIEQYGNYSVPEVNLTLNGVNNQGENIADNGGMKEAYNAYVNWAATHPAEPRLPGLQ 692
+ + + + TL + I DN Y VN +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---DPKYERLVN------------AIL 549
Query: 693 NFTPQQMFWISAASTWCSKHR 713
+F P+ + CSK+
Sbjct: 550 DFLPK-----IEENLICSKYT 565
Score = 36.0 bits (82), Expect = 0.055
Identities = 38/298 (12%), Positives = 90/298 (30%), Gaps = 74/298 (24%)
Query: 458 ELIREEMNKILNT-VEWMDNKTRRKALEKAKAMTAHIAYPDELLDDNKISEFYDKLEIDP 516
E++++ + ++L +++ + + + + + +I D L +DN++ + K +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNV-- 131
Query: 517 NNYYKSILNLTKFGTGYSFSLLRKPVNKTEWIS-HGHP-----ALVNAFYSSIENSITFP 570
+ + L L + +LL + + + G + S +
Sbjct: 132 -SRLQPYLKLRQ-------ALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 571 AGILQGSFFSNDRPKYMNFG---------AIGFVIGHEITHGFDDQGRQFDKNGNLVDWW 621
I F ++N + + ++I + + +
Sbjct: 182 FKI----F-------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 622 QEDTKRSYIEKARCIIEQYGNYSVPEVNLTLNGVNNQGENIAD--NGGMK--------EA 671
Q + +R K Y L L V N + N K +
Sbjct: 231 QAELRRLLKSK------PY-----ENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQV 277
Query: 672 YNAYVNWAATHPA-EPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKLRITTGFHSP 728
+ TH + + TP ++ + C RP+ L + T +P
Sbjct: 278 TDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDC---RPQDLPREVLTT--NP 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 93/549 (16%), Positives = 169/549 (30%), Gaps = 169/549 (30%)
Query: 276 IDIAVLLGADKDVATEELKESLEFEIKLANISLPLEQRRNATKLYNPMSLDELQTKF--- 332
++ +L+ +L+E +F + P E P + EL KF
Sbjct: 16 LEHVLLVPTASFFIASQLQE--QF---NKILPEPTE---GFAADDEPTTPAELVGKFLGY 67
Query: 333 --------PSIPWVEYLNTLL--YPKDRLRETDI--VVV----DVPNYISKLEELLQTTP 376
+ + LN L + L DI + + + K +EL++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY- 126
Query: 377 KKVQANYALWRA-TAASVSYLTEAIRNRQLQYSTALSGRTQ--MEPRWKECVDTVSSSIS 433
+ A R S S L A+ Q G Q + ++E D +
Sbjct: 127 --ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHV 182
Query: 434 LAMGALYVRKFFKEDAKANAIEMVELIREEMN------KILNTVEWMDNKTRRKALEKAK 487
L V K A+ + ELIR ++ + LN +EW++N +
Sbjct: 183 L------VGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEWLENPSNT------- 225
Query: 488 AMTAHIAYPD-ELLDDNKISEFYDKLEIDPNNYYKSILNLTKFG--------TGYSFSLL 538
PD + L IS P ++ + + G++ L
Sbjct: 226 --------PDKDYLLSIPIS-C-------P------LIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 539 RKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGH 598
R + H LV A +I + ++ SFF + R K + + F IG
Sbjct: 264 RSYLKGA--TGHSQ-GLVTA--VAIAETDSWE------SFFVSVR-KAI---TVLFFIGV 308
Query: 599 EITHGFDDQG------RQFDKNGN-------LVDWWQEDTKRSYIEKARCIIEQYGNYSV 645
+ + +N + + + ++ + + N +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----SNLTQEQVQD---YVNKT-NSHL 360
Query: 646 PE---VNLTL-NGVNNQGENIADN---GGMKEAYNAYVNWAATHPAEPRLPGL-QNFTPQ 697
P V ++L NG A N G ++ A GL Q+ P
Sbjct: 361 PAGKQVEISLVNG--------AKNLVVSGPPQSLYGLNLTLRKAKAPS---GLDQSRIP- 408
Query: 698 QMFWISAASTWCSKHRPETLK--LRITTGFHSPGEFRVLGPVSNLESFSRDFQCP----S 751
F S+ + + L + + FHS +L P S + ++D +
Sbjct: 409 --F---------SERKLKFSNRFLPVASPFHSH----LLVPAS--DLINKDLVKNNVSFN 451
Query: 752 GSRMN-PVH 759
+ PV+
Sbjct: 452 AKDIQIPVY 460
Score = 56.2 bits (135), Expect = 4e-08
Identities = 105/737 (14%), Positives = 193/737 (26%), Gaps = 321/737 (43%)
Query: 22 LMLVLGTLLTSTFIFIFCVSTSMYKQHHSEYMPTYSRLNLNNNDLIGGSKVNQITNG--- 78
L L G+L V T+ + S+L + + T G
Sbjct: 9 LTLSHGSLEHV-----LLVPTASF--------FIASQLQ---EQFN--KILPEPTEGFAA 50
Query: 79 DNKPK---------ICFT-----EGCVHTASNLLKNMDLNVDPCDDFYRFSCGKFLKETQ 124
D++P + + V +L L +F +L+
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LT-----EFEN----CYLEGND 100
Query: 125 IPDDKTAQTAFSVISDALEEQLRTIVEEPIRENEPKPFKLVKNLYKACMNVKNIEILGLE 184
I AL +L + + K +L+KN A + K
Sbjct: 101 I--------------HALAAKLLQENDTTL----VKTKELIKNYITARIMAK-------R 135
Query: 185 PMKRMLQDLGGWPVLE--------------GQNWNEETFSWKDSVYKFHENGYSVDYFID 230
P + + GQ G + DYF
Sbjct: 136 PFDKKSNS----ALFRAVGEGNAQLVAIFGGQ-------------------GNTDDYF-- 170
Query: 231 FSIVINVKNNSERIIDLDQATLGLSREYLVKGINEKLVNAYYRYMIDIAVLLGADKDVAT 290
E+L + Y Y + + L+ +
Sbjct: 171 ----------------------------------EELRDLYQTYHVLVGDLI----KFSA 192
Query: 291 EELKESLEFEIKLANISLPLEQRRNATKLYNPMSLDELQ--TKFPSIPWVEYLNTLLYPK 348
E L E L +A K++ L+ L+ + P +YL + P
Sbjct: 193 ETLSE-------LI------RTTLDAEKVF-TQGLNILEWLENPSNTPDKDYLLS--IP- 235
Query: 349 DRLRETDIVVVDVPNYISKLEELLQTTPKKVQANYALWRATAASVSYLTEAIRNRQLQYS 408
+ P L ++Q A+Y TA + + +R+
Sbjct: 236 ----------ISCP-----LIGVIQL------AHYV---VTAKLLGFTPGELRSY----L 267
Query: 409 TALSGRTQMEPRWKECVDTVSSS-ISLAMGALYVRKFFKEDAKANAIEMVELIREEMNKI 467
+G +Q V++ I+ E + + + ++
Sbjct: 268 KGATGHSQ---------GLVTAVAIAETDSW--------ESFFVSVRKAITVLF------ 304
Query: 468 LNTVEWMDNKTRRKALEKAKAMTAHIAYPDELLDDNKISEFYDKLEIDPNNYYKSILNLT 527
++ + + AYP+ L + + + + E P+ +L++
Sbjct: 305 -----FI-------GVR------CYEAYPNTSLPPSILEDSLENNEGVPS----PMLSI- 341
Query: 528 KFGTGYSFSLLRKPVNKTEWISHGHP------ALVN---------------AFYSSIENS 566
+ + ++ VNKT SH +LVN ++
Sbjct: 342 ---SNLTQEQVQDYVNKTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK- 395
Query: 567 ITFPAGILQGSF-FSNDRPK-YMNFGAIG--FVIGH-----EITHGFDDQGRQFDKNGNL 617
P+G+ Q FS + K F + F H + + D N
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HSHLLVPASDLINK-----DLVKNN 447
Query: 618 VDWWQEDTKRSYIEKARCIIEQYGNYSVPEVNLTLNGVN------NQGENIADNGGMKEA 671
V + +D + +P V T +G + + E I D
Sbjct: 448 VSFNAKDIQ------------------IP-VYDTFDGSDLRVLSGSISERIVD-----CI 483
Query: 672 YNAYVNW------AATH 682
V W ATH
Sbjct: 484 IRLPVKWETTTQFKATH 500
Score = 48.1 bits (114), Expect = 1e-05
Identities = 52/273 (19%), Positives = 87/273 (31%), Gaps = 87/273 (31%)
Query: 436 MG-ALY-----VRKFFKEDAKANAIE-----MVELIREEMNKILNTVEWMDNKTRRKALE 484
MG LY + + A + + +++++ N + T+ + K +R E
Sbjct: 1631 MGMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVIN--NPVNLTIHFGGEKGKRIR-E 1686
Query: 485 KAKAMTAHIAYPDELLDDNKISEFYDKLEIDPN-NYY-----KSILNLTKF------GTG 532
AM D L KI + EI+ + Y K +L+ T+F
Sbjct: 1687 NYSAMIFE-TIVDGKLKTEKIFK-----EINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 533 YS-FSLLRK----PVNKTEWISHGHP-----ALV---NAFYSSIEN--SITFPAGILQGS 577
+ F L+ P + GH AL + SIE+ + F G+
Sbjct: 1741 KAAFEDLKSKGLIPADA---TFAGHSLGEYAALASLADVM--SIESLVEVVFYRGMTMQV 1795
Query: 578 FFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGNLVDWWQEDTKRSYIEKARCII 637
D N+G I G + F E + ++
Sbjct: 1796 AVPRDELGRSNYGMIAINPG-RVAASFSQ------------------------EALQYVV 1830
Query: 638 EQYGNYS--VPE-VNLTLNGVNNQ----GENIA 663
E+ G + + E VN N N Q G+ A
Sbjct: 1831 ERVGKRTGWLVEIVN--YNVENQQYVAAGDLRA 1861
Score = 42.3 bits (99), Expect = 6e-04
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 43/116 (37%)
Query: 111 FYRFSCGKFLKETQIPDDKTAQTAFSVISDAL----------EEQLRTIVEEPIRE---- 156
FYR G ++ +P D+ ++ + +I A+ +E L+ +VE +
Sbjct: 1787 FYR---GMTMQVA-VPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 157 ------NEPKPFKLV-----KNLYKAC-----MNVKNIEILGL------EPMKRML 190
N + V + L + ++ I+I+ L E ++ L
Sbjct: 1841 VEIVNYNVE-NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 31.2 bits (70), Expect = 1.9
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 52/150 (34%)
Query: 631 EKA-RCIIEQYGNYSVPEVNLTLNGVNNQGENIADNGG-----MKEAYNAYV---NWAAT 681
+A + YG +S+ ++ + NN GG ++E Y+A +
Sbjct: 1647 NRADNHFKDTYG-FSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 682 HPAEPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKL------RITT------------ 723
E + + F + L +T
Sbjct: 1701 LKTEKIFKEINEHSTSYTF----------RSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 724 GF---------HSPGEFRVLGPVSNLESFS 744
G HS GE+ L ++++ S
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIE 1780
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.043
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 40/108 (37%)
Query: 414 RTQMEP----RWKECVDTVSSSISLAMGALYVRKFFKEDAKANAIEMVELIREEMNKILN 469
R EP +W+E L + DA + M + RE+ K L
Sbjct: 79 RLTQEPESIRKWRE-----EQRKRLQ----------ELDAASK--VMEQEWREKAKKDLE 121
Query: 470 TVEWMDNKTRRKALEKAKAMTAHIAYPDELLDDNKISE--FYDKLEID 515
EW + + +EK K +N+I++ FY + + D
Sbjct: 122 --EWNQR--QSEQVEKNKI-------------NNRIADKAFYQQPDAD 152
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.9 bits (77), Expect = 0.14
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 21/82 (25%)
Query: 559 FYSSIENSITFPAGILQGSFFSNDRPKYMNFGA-----IGFVI-GHEI----THGFDDQG 608
S +E S T + K++ I + +EI + D+
Sbjct: 147 IVSGLELSDTKQ----------KGK-KFLVIAYEPFENIAIELPPNEILFSENNDMDNNN 195
Query: 609 RQFDKNGNLVDWWQEDTKRSYI 630
D+ +W +K Y+
Sbjct: 196 DGVDELNKKCTFWDAISKLYYV 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.44
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 294 KESLEFEIKLANISLPLEQRRNATKLYNPMSLDELQTK 331
K++L+ KL SL KLY S L K
Sbjct: 19 KQALK---KLQA-SL---------KLYADDSAPALAIK 43
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A
{Staphylococcus aureus} SCOP: d.92.1.2
Length = 301
Score = 32.0 bits (72), Expect = 0.62
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 17/91 (18%)
Query: 518 NYYKSILNLTKF-GTGYSFSLLRKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQG 576
+YYK+ + G L + G NA + + + + G
Sbjct: 79 DYYKNTFGRESYDNHGSPIVSL---THV--NHYGGQDNRNNAAWIG--DKMIYGDG---- 127
Query: 577 SFFSNDRPKYMNFGAIGFVIGHEITHGFDDQ 607
D + N V+ HEITHG Q
Sbjct: 128 -----DGRTFTNLSGANDVVAHEITHGVTQQ 153
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 32.0 bits (72), Expect = 0.77
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 550 HGHPALVNAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDDQ 607
H NAF++ Q F D + F V+GH + HG +
Sbjct: 125 HYGKEYQNAFWNG-----------QQMVFGDGDGEIFNRFTIAIDVVGHALAHGVTES 171
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural
genomics, PSI-biology; 2.30A {Synechocystis SP} PDB:
2l06_A
Length = 147
Score = 30.2 bits (68), Expect = 1.4
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 506 SEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRKPVNKTEWISH-------GHPALVNA 558
S Y K +P +++ + G R P ++ E + G PALV+A
Sbjct: 73 SPLYRKQFFEPFINSRALELAFRHILG------RGPSSREEVQKYFSIVSSGGLPALVDA 126
Query: 559 FYSSIENSITF 569
S E + F
Sbjct: 127 LVDSQEYADYF 137
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD
2; PFAM00427 domain, linker protein, phycobiliprotein,
photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Length = 148
Score = 29.8 bits (67), Expect = 1.5
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 506 SEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRKPVNKTEWISH-------GHPALVNA 558
SE Y + N + I K G R P +++E H G+ A +N+
Sbjct: 62 SEVYRQKFFHSNPQNRFIELNYKHLLG------RAPYDQSEIAFHTDLYHQGGYEAEINS 115
Query: 559 FYSSIENSITF 569
+ S+E + F
Sbjct: 116 YIDSVEYTENF 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 30.8 bits (69), Expect = 2.3
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 25/191 (13%)
Query: 461 REEMNKILNTVEWMDNKTRRKALEKAKAMTAHIAYPDELLDDNKISEFYDKLEIDPNNYY 520
+ L + D++ K EK A +AY D I+ + N+ +
Sbjct: 887 NNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE------NSLF 940
Query: 521 KSILNL---TKFGTGYSFSLLRKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQGS 577
KS+ K + LL + I ++ E S+T A
Sbjct: 941 KSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA------ 994
Query: 578 FFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQFDKNGNLVDWWQEDTKRSYIEKARCII 637
F + D P + E+ F ++ NL + ++ + I
Sbjct: 995 FMTADLPNEL----------IELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYI 1044
Query: 638 EQYGNYSVPEV 648
+ NY P++
Sbjct: 1045 NRLDNYDAPDI 1055
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 30.6 bits (69), Expect = 2.6
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 422 KECVDTVSSSISLAMGALYVRKFFKE------DAKANAIEMVELIREEMNKILNTVEWMD 475
E D V I+L +G L +R+ + E + K+N E++ +++ + +
Sbjct: 127 LEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSN----YEVLEKDVGLRRFFPKSLL 182
Query: 476 NKTRRKALEKAKAMTAHIAYPDELLDDNKISEFYDKL 512
+ + K L K + L + I +F++ L
Sbjct: 183 DSVKAKTL--RKLIQQTFRQFANLNREESILKFFEIL 217
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4,
hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa}
SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Length = 301
Score = 29.6 bits (66), Expect = 3.2
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 27/91 (29%)
Query: 518 NYYKSILNLTKFGTGYSFSLLRKPV-NKTEWISHGHPALVNAFYSSIENSITFPAGILQG 576
Y+ P+ +K H ++ NA++ ++ F G
Sbjct: 85 KLYRDWFG-------------TSPLTHKLYMKVHYGRSVENAYWDG--TAMLFGDG--AT 127
Query: 577 SFFSNDRPKYMNFGAIGFVIGHEITHGFDDQ 607
F+ V HE++HGF +Q
Sbjct: 128 MFYPLVSLD---------VAAHEVSHGFTEQ 149
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Length = 508
Score = 29.6 bits (67), Expect = 4.3
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 25/101 (24%)
Query: 427 TVSSSISLAMGAL-YVRKFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRR----- 480
+ I+L +G L + KA I R+ + + + R
Sbjct: 161 SCGEGITLPLGGLRLSEQSDGSLEKAATI-----ARKHVKSFA---KLLAAGEGRTFYAV 212
Query: 481 ----KALEKAKAMTAHIAYPDELLDDNKIS-----EFYDKL 512
+ + AK YP ++ ++ F +++
Sbjct: 213 GGTWRNI--AKLHMEISGYPLHMMQGYELPLEEMLNFLEEV 251
>1f0l_A Diphtheria toxin; bacterial toxin, ADP-ribosylation, transmembrane;
HET: APU; 1.55A {Corynebacterium diphtheriae} SCOP:
b.2.1.1 d.166.1.1 f.1.2.1 PDB: 1ddt_A* 1mdt_A* 1sgk_A
1tox_A* 1xdt_T 4ae0_A 4ae1_A 1dtp_A*
Length = 535
Score = 29.5 bits (65), Expect = 4.4
Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 25/232 (10%)
Query: 164 LVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQNWNEETFSWKDSVYKFHENGY 223
+VK Y V +++ E +K+ L P++E E + D + +
Sbjct: 80 VVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLS-- 137
Query: 224 SVDYFIDFSIVINVKNNSERIIDLDQATLGLSREYLVKGINEKLVNAYYRYMIDIAVLLG 283
F + S + NN E+ L + E + ++ +A Y YM
Sbjct: 138 --LPFAEGSSSVEYINNWEQ-----AKALSVELEINFETRGKRGQDAMYEYMA------- 183
Query: 284 ADKDVATEELKESLEFEIKLANISLPLEQRRNATKLYNPMSLDELQTKFPSIPWVEYLNT 343
+ A ++ S+ + N+ + + + TK+ + ++ K E N
Sbjct: 184 --QACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMS-----ESPNK 236
Query: 344 LLYPKDRLRETDIVVVDVPNY--ISKLEELLQTTPKKVQANYALWRATAASV 393
+ + + + + +S+L+ + T P ANYA W A V
Sbjct: 237 TVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQV 288
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND
protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron}
SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Length = 527
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 553 PALVNAFYSSIENSITFPAG-ILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDDQGRQF 611
A+V F+S++E+ PA + D G I DD+ +
Sbjct: 303 AAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLY 362
Query: 612 DKNGNLVDWWQEDTKRSYIEKARCIIEQYGNYSVPEVNLTLNGVNNQGENI 662
G Q D + + + ++ NY ++ +I
Sbjct: 363 SGVGGGRRKIQTDAISGFTDGLSIV--KWQNYRSD--GKPVSHATYPDTDI 409
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease,
alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas
SP} PDB: 3nqy_B 3nqz_B
Length = 306
Score = 28.9 bits (64), Expect = 6.4
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 25/90 (27%)
Query: 518 NYYKSILNLTKFGTGYSFSLLRKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQGS 577
N Y L + + H NAF+ +++TF G Q +
Sbjct: 86 NMYNDWLGTAPLS------------FQLQMRVHYSSNYENAFWDG--SAMTFGDG--QNT 129
Query: 578 FFSNDRPKYMNFGAIGFVIGHEITHGFDDQ 607
F+ V HE++HGF +Q
Sbjct: 130 FYPLVSL---------DVSAHEVSHGFTEQ 150
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product
complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia
pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Length = 179
Score = 28.0 bits (62), Expect = 9.5
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 19/119 (15%)
Query: 154 IRENEPKPFKLVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQNWNEETFSWKD 213
+RE P +L + I + ++ ML LG P +
Sbjct: 62 LREMNPSGIRLWIVKGPGAERCEASNIEDVSKVQSMLATLGYHPAFTIEKQRS------- 114
Query: 214 SVYKFHENGYSVD------YFIDFSIVIN----VKNNSERIIDLDQATLGLSREYLVKG 262
+Y + +VD F + +I+ + + D T GL +
Sbjct: 115 -IYFVGKFHITVDHLTGLGDFAEIAIMTDDATELDKLKAECRDF-ANTFGLQVDQQEPR 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,851,114
Number of extensions: 720206
Number of successful extensions: 1882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1824
Number of HSP's successfully gapped: 36
Length of query: 764
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 663
Effective length of database: 3,881,772
Effective search space: 2573614836
Effective search space used: 2573614836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)