RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1977
(764 letters)
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 696
Score = 573 bits (1477), Expect = 0.0
Identities = 246/699 (35%), Positives = 385/699 (55%), Gaps = 22/699 (3%)
Query: 84 ICFTEGCVHTASNLLKNMDLNVDPCDDFYRFSCGKFLKETQIPDDKTAQTAFSVISDALE 143
IC + C+ +A+ L++NMD +PC DF++++CG +LK IP+ + F ++ D LE
Sbjct: 2 ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELE 61
Query: 144 EQLRTIVEEPIRENEPKPFKLVKNLYKACMNVKNIEILGLEPMKRMLQDLGGWPVLEGQN 203
L+ +++EP + + + K LY++C+N I+ G EP+ ++L D+ GWPV
Sbjct: 62 VVLKDVLQEP-KTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENW 120
Query: 204 WNEETFSWK-DSVYKFHENGYSVDYFIDFSIVINVKNNSERIIDLDQATLGLSRE--YLV 260
+ SW + + Y I+ + + KN+ +I +DQ LGL Y
Sbjct: 121 EQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYEC 180
Query: 261 KGINEKLVNAYYRYMIDIAVLLGA------DKDVATEELKESLEFEIKLANISLPLEQRR 314
GI ++ AY +MI +A L+ D++ E+ + +E E ++AN + E R
Sbjct: 181 TGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRN 240
Query: 315 NATKLYNPMSLDELQTKF------PSIPWVEYLNTLLYPKDR-LRETDIVVVDVPNYISK 367
+ LYN M+L ++Q F W+ + N ++ + + + VVV P Y++K
Sbjct: 241 DPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTK 300
Query: 368 LEELLQTTPKKVQANYALWRATAASVSYLTEAIRNRQLQYSTALSGRTQMEPRWKECVDT 427
L+ +L + N WR VS L+ + + + AL G T W+ C +
Sbjct: 301 LKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANY 360
Query: 428 VSSSISLAMGALYVRKFFKEDAKANAIEMVELIREEMNKILNTVEWMDNKTRRKALEKAK 487
V+ ++ A+G LYV F ++K +++ IRE + L+ + WMD +T+++A EKA
Sbjct: 361 VNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKAL 420
Query: 488 AMTAHIAYPDELL-DDNKISEFYDKLEIDPNNYYKSILNLTKFGTGYSFSLLRKPVNKTE 546
A+ I YPD+++ +DNK++ Y +L + Y+++I+ KF LR+ V+K E
Sbjct: 421 AIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDE 480
Query: 547 WISHGHPALVNAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFVIGHEITHGFDD 606
WIS A+VNAFYSS N I FPAGILQ FFS + +N+G IG VIGHEITHGFDD
Sbjct: 481 WIS--GAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDD 538
Query: 607 QGRQFDKNGNLVDWWQEDTKRSYIEKARCIIEQYGNYSVPEV-NLTLNGVNNQGENIADN 665
GR F+K+G+LVDWW + + ++ E+++C++ QYGN+S LNG+N GENIADN
Sbjct: 539 NGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADN 598
Query: 666 GGMKEAYNAYVNWAATHPAEPRLPGLQNFTPQQMFWISAASTWCSKHRPETLKLRITTGF 725
GG+ +AY AY N+ + E LPGL + +Q+F+++ A WC +RPE I T
Sbjct: 599 GGLGQAYRAYQNYIKKNGEEKLLPGL-DLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDV 657
Query: 726 HSPGEFRVLGPVSNLESFSRDFQCPSGSRMNPVHKCKVW 764
HSPG FR++G + N FS F C S MNP KC+VW
Sbjct: 658 HSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 254
Score = 30.7 bits (69), Expect = 0.57
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 17/146 (11%)
Query: 476 NKTRRKALEKAKAMTAHIAYPDELLDDNKISEFYDKLEIDPNNYYKSILNLTKFGTGYSF 535
KT R A E + AH YPD + + + + N + G +
Sbjct: 46 RKTVRLAKENDVQVGAHPGYPD--------LMGFGRRYMKLT--PEEARNYILYQVGALY 95
Query: 536 SLLRKPVNKTEWISHGHPALVNAFYSSIENSITFPAGILQGSFFSNDRPKYMNFGAIGFV 595
+ + + + + H AL NA + + GIL F D +
Sbjct: 96 AFAKAEGLELQHVKP-HGALYNAMVKEEDLARAVIEGILD---FDKDLILVTLSNSRVAD 151
Query: 596 IGHEITHGFDDQG---RQFDKNGNLV 618
I E+ + R ++ +G LV
Sbjct: 152 IAEEMGLKVAHEVFADRAYNPDGTLV 177
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.0 bits (62), Expect = 4.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 476 NKTRRKALEKAKAMTAHIAYPD 497
R+A++ A+ AH ++PD
Sbjct: 41 QACVREAIKNGVAIGAHPSFPD 62
>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId:
287]}
Length = 298
Score = 27.6 bits (61), Expect = 5.0
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 530 GTGYSFSLLRKPVNKTEWISHGHPALVNAFY---------------SSIENSITFPA--G 572
T + F+ P N + ++ + L +A + S + + + G
Sbjct: 51 TTPFRFAC---PTNTYKQVNGAYSPLNDAHFFGGVVFKLYRDWFGTSPLTHKLYMKVHYG 107
Query: 573 ILQGSFFSNDRPKYMNFGAIGF-------VIGHEITHGFDDQ 607
+ + + GA F V HE++HGF +Q
Sbjct: 108 RSVENAYWDGTAMLFGDGATMFYPLVSLDVAAHEVSHGFTEQ 149
>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 316
Score = 27.6 bits (61), Expect = 5.4
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 31/109 (28%)
Query: 528 KFGTGYSFSLLRKPVNKTEWISHGHPALVNAFY---------------SSIENS-----I 567
K+ T SL N+ + + V+A Y S + +
Sbjct: 45 KYRTTLPGSLWADADNQ--FFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRS 102
Query: 568 TFPAGILQGSFFSNDRPKYMNFGAIGF---------VIGHEITHGFDDQ 607
+ + F N G V+ HE+TH D
Sbjct: 103 SVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDY 151
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
{Escherichia coli [TaxId: 562]}
Length = 338
Score = 27.1 bits (59), Expect = 9.6
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 16/70 (22%)
Query: 406 QYSTALSGRTQMEPRWKECVDTVSSSISLAMGALYVRKFFKEDAKANAIEMVELIREEMN 465
+Y T +GR + P W + G F +A ++ + E
Sbjct: 6 RY-TRFTGRPALPPAW-------------SFGLWLTTSFTTNYDEATVNSFIDGMAE--R 49
Query: 466 KILNTVEWMD 475
+ V D
Sbjct: 50 NLPLHVFHFD 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,950,174
Number of extensions: 141664
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 21
Length of query: 764
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 672
Effective length of database: 1,144,436
Effective search space: 769060992
Effective search space used: 769060992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)