BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy198
(245 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|114050899|ref|NP_001040163.1| ischemia/reperfusion inducible protein [Bombyx mori]
gi|87248253|gb|ABD36179.1| ischemia/reperfusion inducible protein [Bombyx mori]
Length = 274
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 154/226 (68%), Gaps = 4/226 (1%)
Query: 17 NAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEI 76
++ + + M S++ D A+L AA+CL KG V+A+PTDT+YGLAC A AI LY I
Sbjct: 35 QSLMMRNTMTSVISCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPLAIKKLYSI 94
Query: 77 KKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNV 135
K R+ KP+AICV+ + D+ KW + +S +LL LLPGPVT+V +++HL N LNP+
Sbjct: 95 KGREAVKPVAICVTSVADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPST 154
Query: 136 TKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS 195
TK+ +RIP H F+ + K+ D P+ALTSAN SNEPSTL I EF+ L+ L+ + DGG++S
Sbjct: 155 TKIGIRIPKHDFMNTVTKIFDMPVALTSANFSNEPSTLSIKEFEHLYPHLAAIFDGGLLS 214
Query: 196 N---PERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
R GST++DLS+ +Y I+RKG+ YD ++K++ +Y L + N
Sbjct: 215 QGLEQNRTGSTVIDLSKNGLYKIIRKGISYDNVIKVVERYGLKKNN 260
>gi|195401705|ref|XP_002059453.1| GJ18829 [Drosophila virilis]
gi|194142459|gb|EDW58865.1| GJ18829 [Drosophila virilis]
Length = 259
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 145/221 (65%), Gaps = 7/221 (3%)
Query: 22 PSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV 81
P+ +C++ + A LA QCL G V+ LPTDT+YGLACDA N +AI LYEIK RD
Sbjct: 38 PTPVCAVASL---DALKLAEQCLHLGQVIGLPTDTVYGLACDANNEEAIQRLYEIKGRDE 94
Query: 82 NKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAV 140
+KP+AICV+ I + ++ +S ELL LLPGP+TI+ RS L N LNP+ TK+ +
Sbjct: 95 HKPVAICVNNIAALRRYGQASHLSDELLTRLLPGPLTIIVERSPQLSNRFLNPSTTKIGI 154
Query: 141 RIPDHKFLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE- 198
RIPD+KF+R L + PLALTSAN S+ PS+L ++EFQ LW QL V D G I E
Sbjct: 155 RIPDYKFMRDLCATWHEQPLALTSANRSSAPSSLQVSEFQSLWPQLGAVFDAGRIGQTEE 214
Query: 199 -RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
R ST++DL++ YSIVR GV + L +LH++ V+++
Sbjct: 215 RRLASTVIDLAKPGSYSIVRAGVALKQTLAVLHEFGYVKQD 255
>gi|357631745|gb|EHJ79214.1| ischemia/reperfusion inducible protein [Danaus plexippus]
Length = 296
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 145/215 (67%), Gaps = 4/215 (1%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
KM SI D + + AA+ L+KG V+A+PTDT+YGLAC A +AI LY IK RD K
Sbjct: 77 KMASIFPCDDVSSYVKAAEYLEKGEVIAVPTDTIYGLACSAKCPEAIKKLYTIKGRDSIK 136
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRI 142
P+AICV+ I D+ W D +S LL LLPGPVT+V ++++L N LNP TK+ +RI
Sbjct: 137 PVAICVNSILDVRHWGDASHLSDILLNNLLPGPVTVVLEKTKYLDNPYLNPQTTKIGIRI 196
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS---NPER 199
P++ F+ + + + P+ALTSAN SNEPSTLCI EF+ L+ L V DGG +S N R
Sbjct: 197 PNNVFINNMTNVFNKPVALTSANFSNEPSTLCIEEFKHLYEHLGAVFDGGTLSRGLNANR 256
Query: 200 FGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHL 234
GSTIVDLS + Y+I+RKG+ Y++I++ L+ Y L
Sbjct: 257 IGSTIVDLSVKGEYNIIRKGISYERIVEFLNSYGL 291
>gi|195119554|ref|XP_002004296.1| GI19851 [Drosophila mojavensis]
gi|193909364|gb|EDW08231.1| GI19851 [Drosophila mojavensis]
Length = 228
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 137/204 (67%), Gaps = 4/204 (1%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LA QCL+ G V+ALPTDT+YGLACDA N +AI LYEIK RD +KP+AICV+ IT + ++
Sbjct: 22 LAEQCLQLGKVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAICVNNITALRRY 81
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQL-LKLMD 156
+S ELL LLPGP+TI+ + HL N LNP+ +K+ +RIPD +F+R L + +
Sbjct: 82 GQASHLSDELLTRLLPGPLTIIVEHTPHLSNRYLNPSTSKIGIRIPDFQFIRDLCARWHE 141
Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYS 214
PLALTSAN S+EPS+L I EFQ LW QL + D G I E R ST++DL+ Y
Sbjct: 142 QPLALTSANRSSEPSSLEIIEFQALWPQLGAIFDAGRIGQTEERRLASTVIDLANPGCYE 201
Query: 215 IVRKGVCYDKILKILHKYHLVEKN 238
IVR GV + L +LH++ V +N
Sbjct: 202 IVRAGVALKQTLSVLHEFGYVNQN 225
>gi|189233999|ref|XP_001811736.1| PREDICTED: similar to CG33786 CG33786-PA, partial [Tribolium
castaneum]
Length = 210
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 137/206 (66%), Gaps = 3/206 (1%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
V + DP A LA LK G V+ALPTDT+YGLACDATN +IN LY IK R+ KP+AIC
Sbjct: 5 VPIRDPHAEALAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAIC 64
Query: 89 VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFL 148
+ ++ + WA + LL LLPGPVT++ + L+ L+ N KV +RIPD+ F+
Sbjct: 65 LGDVPQVKAWAKIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFN-AKVGIRIPDYHFI 123
Query: 149 RQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVD 206
R L + + PLALTSAN SNEPS+L INEFQ LW+Q+ V DGG + + R ST++D
Sbjct: 124 RALARGLGRPLALTSANLSNEPSSLTINEFQDLWAQVGAVFDGGNLGLDDSRRRASTVID 183
Query: 207 LSEENVYSIVRKGVCYDKILKILHKY 232
LSE +++IVR G+ DK + ILHK+
Sbjct: 184 LSECGLFTIVRHGIAVDKTVAILHKF 209
>gi|225708092|gb|ACO09892.1| Hypothetical protein ywlC [Osmerus mordax]
Length = 268
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/196 (55%), Positives = 135/196 (68%), Gaps = 2/196 (1%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
Q LK+G VVALPTDT+YGLAC A NS AI +YEIK R+ KPLAICV EI DI K+
Sbjct: 69 QSLKEGQVVALPTDTIYGLACLAQNSDAIKRVYEIKGRNGQKPLAICVGEIQDIYKYCKV 128
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+V ELL ELLPGPVT+V RS LN +LNP V VRIP+H F+R+L +L PLAL
Sbjct: 129 -SVKEELLKELLPGPVTLVLQRSTVLNTDLNPFTPLVGVRIPNHPFMRRLCQLCAEPLAL 187
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
TSAN S ST+ ++EFQ LW +L+VV+DGG I + R GST++DLS Y I+R G
Sbjct: 188 TSANISTHSSTVAVHEFQDLWPRLAVVVDGGPIGDHSRLGSTVIDLSVFGKYRIIRPGCA 247
Query: 222 YDKILKIL-HKYHLVE 236
+ + +L HKY L+E
Sbjct: 248 FSATVDLLEHKYGLLE 263
>gi|348526097|ref|XP_003450557.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Oreochromis niloticus]
Length = 267
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 2/198 (1%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ LK+G +VA+PTDT+YGLAC A NS A+ Y+ K R+ KPLAICV EI DI
Sbjct: 68 KALKEGHIVAVPTDTIYGLACLAQNSDAVRKTYDTKGRNGQKPLAICVGEIQDI-YKYCK 126
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
V ELL +LLPGPVT+VF RSE LN +LNP + V VRIPDH F+RQL ++ PLAL
Sbjct: 127 VKVKKELLGDLLPGPVTLVFERSEELNTDLNPFTSLVGVRIPDHPFMRQLCQMCGEPLAL 186
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
TSAN S++ ST+ ++EFQ+LW +L+VV+DGG I + R GST+VDLS Y I+R G
Sbjct: 187 TSANISSQTSTVEVHEFQELWPKLAVVVDGGPIGDQSRLGSTVVDLSVLGKYRIIRPGCA 246
Query: 222 YDKILKIL-HKYHLVEKN 238
+ +L HKY L E +
Sbjct: 247 LSSTVDVLKHKYGLSEHS 264
>gi|195029409|ref|XP_001987565.1| GH19895 [Drosophila grimshawi]
gi|193903565|gb|EDW02432.1| GH19895 [Drosophila grimshawi]
Length = 250
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 134/206 (65%), Gaps = 4/206 (1%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LA QCL+ G V+ALPTDT+YGLACDA N +AI LYEIK RD +KP+AICV+ I + ++
Sbjct: 42 LAEQCLQLGKVIALPTDTVYGLACDANNEEAIQRLYEIKGRDAHKPVAICVNTIGALRRY 101
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLM-D 156
+S ELL LLPGP+TIV R+ L N LNP+ T++ +RIPD KF+R L +
Sbjct: 102 GQASHLSDELLTRLLPGPLTIVIERTPQLSNRFLNPSTTRIGIRIPDFKFMRDLCGTWHE 161
Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGSTIVDLSEENVYS 214
PLALTSAN S+ PS+L I+EFQ LW QL V D G I S R ST++DL Y
Sbjct: 162 QPLALTSANRSSAPSSLHISEFQALWPQLGAVFDAGRIGLSEERRLASTVIDLVTPGCYD 221
Query: 215 IVRKGVCYDKILKILHKYHLVEKNTF 240
IVR GV + L +LH++ V K+
Sbjct: 222 IVRSGVALKQTLAVLHEFGYVAKSQL 247
>gi|270015172|gb|EFA11620.1| hypothetical protein TcasGA2_TC030645 [Tribolium castaneum]
Length = 203
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 136/202 (67%), Gaps = 3/202 (1%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LA LK G V+ALPTDT+YGLACDATN +IN LY IK R+ KP+AIC+ ++ + W
Sbjct: 2 LAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLGDVPQVKAW 61
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + LL LLPGPVT++ + L+ L+ N KV +RIPD+ F+R L + + P
Sbjct: 62 AKIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFN-AKVGIRIPDYHFIRALARGLGRP 120
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVDLSEENVYSIV 216
LALTSAN SNEPS+L INEFQ LW+Q+ V DGG + + R ST++DLSE +++IV
Sbjct: 121 LALTSANLSNEPSSLTINEFQDLWAQVGAVFDGGNLGLDDSRRRASTVIDLSECGLFTIV 180
Query: 217 RKGVCYDKILKILHKYHLVEKN 238
R G+ DK + ILHK+ L+ K+
Sbjct: 181 RHGIAVDKTVAILHKFGLINKH 202
>gi|139949035|ref|NP_001077336.1| yrdC domain-containing protein, mitochondrial [Danio rerio]
gi|134025291|gb|AAI34956.1| Zgc:162301 protein [Danio rerio]
Length = 235
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 135/194 (69%), Gaps = 2/194 (1%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
LK G VVA+PTDT+YGLAC A NS+AI +Y+IK R+ +KPLAICV EI DI K+ +
Sbjct: 38 LKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCKV-S 96
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RS LN +LNP + VRIPDH F+R+L ++ D+PLALTS
Sbjct: 97 VKDRLLRDLLPGPVTLVLERSATLNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTPLALTS 156
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD 223
AN S + ST+ NEF+ LW +L+VV+DGG I + R GST+VDLS Y I+R G
Sbjct: 157 ANVSTQSSTVAANEFEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIRPGCALS 216
Query: 224 KILKILH-KYHLVE 236
++IL +Y L+E
Sbjct: 217 ATVQILEGRYGLLE 230
>gi|157118653|ref|XP_001659198.1| hypothetical protein AaeL_AAEL001412 [Aedes aegypti]
gi|108883260|gb|EAT47485.1| AAEL001412-PA [Aedes aegypti]
Length = 251
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 140/219 (63%), Gaps = 4/219 (1%)
Query: 17 NAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEI 76
N I P +++K +D KA AA L+ G V+ALPTDT+YGLAC A + KAI LY I
Sbjct: 28 NGIMAPV-AGTVIKSSDNKAIRQAANLLESGKVIALPTDTVYGLACSANDPKAIQRLYAI 86
Query: 77 KKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNV 135
K R+ KP+AICV++ D+ W + + ELL +LLPGPVTIV +S HL N LNP V
Sbjct: 87 KGREEKKPVAICVADFNDLRHWGQANHLPNELLEQLLPGPVTIVVRKSVHLDNPFLNPGV 146
Query: 136 TKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS 195
K+ +RIPD F+R + + P+ALTSAN S+E STL + EF+KLW L V DGG +
Sbjct: 147 EKIGIRIPDFDFIRDVSRAFRFPVALTSANRSSEQSTLNVGEFEKLWPALGAVFDGGQLG 206
Query: 196 --NPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKY 232
+R ST++DLS+ Y I+RKGV + ++++ ++
Sbjct: 207 LREEQRAASTVIDLSQVGQYKIIRKGVAIEHTVRVVEQF 245
>gi|432910347|ref|XP_004078322.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Oryzias latipes]
Length = 265
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 135/196 (68%), Gaps = 2/196 (1%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+ G +VA+PTDT+YGLAC A NS+A+ +Y +K R+ KPLAICV EI DI K+
Sbjct: 66 KALQDGHIVAVPTDTIYGLACLAQNSEAVRKIYAVKGRNGQKPLAICVREIQDIYKYCKV 125
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
V ELL +LLPGPVT+VF RSE LN LNP + V VRIP+H F+R+L ++ + PLAL
Sbjct: 126 E-VKKELLGDLLPGPVTLVFKRSETLNPALNPFTSLVGVRIPNHGFMRRLCQMCEEPLAL 184
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
TSAN S+ ST+ ++EFQ+LW ++VV+DGG I + R GST+VDLS N Y I+R G
Sbjct: 185 TSANVSSHTSTVEVHEFQELWPHVAVVVDGGPIGDQSRLGSTVVDLSVCNKYRIIRPGCA 244
Query: 222 YDKILKIL-HKYHLVE 236
L +L KY L E
Sbjct: 245 LSVTLDVLERKYGLSE 260
>gi|348552974|ref|XP_003462302.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Cavia porcellus]
Length = 279
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 130/196 (66%), Gaps = 5/196 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASCSAALGAVYRLKGRSGTKPLAVCLGRVADVYRYCKVK- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL ELLPGPVT+V RSE LN +LNP V VRIPDH F+++L ++ + PLALTS
Sbjct: 137 VPEELLKELLPGPVTLVMERSEELNKDLNPFTPLVGVRIPDHAFMQELAQMFEGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LWS LS+VIDGG I + + R GST+VDLS + I+R G
Sbjct: 197 ANISSQASSLKVEEFQDLWSHLSLVIDGGPIGDGQNFECRLGSTVVDLSVPGKFGIIRPG 256
Query: 220 VCYDKILKILHKYHLV 235
+ IL KY L+
Sbjct: 257 CALESTTAILQKYKLL 272
>gi|78707274|ref|NP_001027444.1| CG33786 [Drosophila melanogaster]
gi|17946164|gb|AAL49123.1| RE55868p [Drosophila melanogaster]
gi|71911685|gb|AAF57437.2| CG33786 [Drosophila melanogaster]
gi|220948934|gb|ACL87010.1| CG33786-PA [synthetic construct]
gi|220957748|gb|ACL91417.1| CG33786-PA [synthetic construct]
Length = 248
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 142/236 (60%), Gaps = 7/236 (2%)
Query: 5 LHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDA 64
L + T H A L + +C+ V D A LA QCL G V+ALPTDT+YGLACDA
Sbjct: 12 LRAHHTSSRMQHQASELRTPVCA---VGDEAALQLARQCLLGGQVIALPTDTVYGLACDA 68
Query: 65 TNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRS 124
N AI LYEIK RD +KP+AICV I + ++ +S ELL LLPGP+TIV R+
Sbjct: 69 NNETAIQQLYEIKGRDEHKPVAICVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERT 128
Query: 125 EHL-NLELNPNVTKVAVRIPDHKFLRQLLKL-MDSPLALTSANESNEPSTLCINEFQKLW 182
L N LNP+ +K+ +RIPD F+R L + + PLALTSAN S+ PS+L ++EF+ LW
Sbjct: 129 SQLSNRFLNPSTSKIGIRIPDFNFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLW 188
Query: 183 SQLSVVIDGGIISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
QL V D G I E R ST++DL+ Y IVR GV L ++ ++ + E
Sbjct: 189 PQLGAVFDAGRIGLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRE 244
>gi|340379066|ref|XP_003388048.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Amphimedon queenslandica]
Length = 249
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 137/216 (63%), Gaps = 4/216 (1%)
Query: 26 CSIVKVTDPKAALLA-AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
+I+K +D A+ A+ L++G V+A+PTDT+YGL A ++ AI +Y IK R +P
Sbjct: 35 ANILKASDGLDAVWECARLLERGGVLAVPTDTIYGLTASALDTGAIERIYSIKGRTKMRP 94
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPD 144
LAICV I DI KWA +T+S +LL ELLPGPVT+V R E LN LNP + V VRIP
Sbjct: 95 LAICVGRINDIDKWA-INTLSTDLLDELLPGPVTLVMRRRESLNPSLNPAIETVGVRIPH 153
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN--PERFGS 202
F+ +L + D PLALTSAN SNE STL I EFQ LW QL V+DGG I N R GS
Sbjct: 154 SHFITELAQHFDKPLALTSANVSNEKSTLAIEEFQSLWPQLDAVVDGGRIGNNSASRDGS 213
Query: 203 TIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
T+VD+S E Y I+R G + +L KY L E +
Sbjct: 214 TVVDVSVEGYYKIIRPGCALMQTSALLMKYGLKESS 249
>gi|390356603|ref|XP_793502.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 246
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA L G V+++PTDT+YGLA A +++A+ LYE+K R+ NKP+AIC++ I DI +W
Sbjct: 44 LAANSLMSGNVISVPTDTIYGLAALAQSAEAVEKLYEVKGRNGNKPIAICINCIEDIHRW 103
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
TVS ++L +LLPGPVT++F R LN E NP+ + +RIP++ F++QL + P
Sbjct: 104 GYV-TVSDDILRDLLPGPVTVLFRRRSELNPEFNPSSELIGLRIPEYPFIQQLAAAVGEP 162
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYSIV 216
+ALTSAN S + STL + EF+ LWS++ +V DGG++S+ E R GST+VDLS +SI+
Sbjct: 163 IALTSANPSAQRSTLSVKEFEDLWSKIDLVFDGGVLSDSEESRQGSTVVDLSVMGRFSII 222
Query: 217 RKGVCYDKILKILH-KYHLVEK 237
R G +K +KIL+ KYHL EK
Sbjct: 223 RPGSAQEKTVKILNGKYHLKEK 244
>gi|321463246|gb|EFX74263.1| hypothetical protein DAPPUDRAFT_215182 [Daphnia pulex]
Length = 226
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 138/220 (62%), Gaps = 7/220 (3%)
Query: 25 MCSIVKVTDPK--AALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M + V + PK AA+L A + LK G V+ALPTDTLYG+AC + + +A+ LY+IK RD
Sbjct: 1 MINPVILLGPKNSAAILKNAVELLKSGSVIALPTDTLYGIACLSQSPEALKKLYQIKSRD 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAV 140
NKP+AICVS++++I KW TV LL +LLPGPVT+VF RS LN ELNP V +
Sbjct: 61 KNKPVAICVSQVSEIAKWGHV-TVDERLLHDLLPGPVTLVFERSPALNPELNPGTKLVGI 119
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPE 198
RIPD F+RQL PLALTSAN S STL + EF +W L V +GG I +
Sbjct: 120 RIPDSWFIRQLSNSCAEPLALTSANISGSQSTLSVEEFLGIWEHLGAVFNGGPIPDGSTA 179
Query: 199 RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
R GST+VDLS Y I+R G ++ L KY LVE +
Sbjct: 180 RLGSTVVDLSSPGTYRIIRPGCAQTITVEKLEKYGLVEAS 219
>gi|156548558|ref|XP_001605728.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Nasonia vitripennis]
Length = 266
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 137/210 (65%), Gaps = 5/210 (2%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
++A +AA+ L+ G +VA+PTDT+YGLA A N ++ LYEIKKRD +KPLAIC+ ++ D
Sbjct: 30 RSAAVAAELLRNGKIVAMPTDTIYGLAGLAQNDASVARLYEIKKRDESKPLAICLWDVDD 89
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
I WA + LL LLPGP T+V R LN LNP V V +RIP + F+R ++K+
Sbjct: 90 IENWAHVEDLPDGLLQALLPGPTTLVLKRKSSLNPHLNPGVENVGIRIPKYDFIRSVVKM 149
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVV----IDGGIISNPERFGSTIVDLSEE 210
++ P+ALTSANESN PS+L EFQ LW +L V ++ G I R GST+VDL+
Sbjct: 150 LNQPIALTSANESNAPSSLHPEEFQSLWPELDGVFYEKMNLGTIKESWRRGSTVVDLTVA 209
Query: 211 NVYSIVRKGVCYDKILKILHKYHLV-EKNT 239
+SI+R+G+ Y ++L ++ L +KNT
Sbjct: 210 GQFSILRRGIGYQTTFRVLREHQLTYQKNT 239
>gi|195486789|ref|XP_002091655.1| GE13782 [Drosophila yakuba]
gi|194177756|gb|EDW91367.1| GE13782 [Drosophila yakuba]
Length = 251
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 140/233 (60%), Gaps = 7/233 (3%)
Query: 10 TLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKA 69
T H A L + +C V D A LA QCL G V+ALPTDT+YGLACDA N A
Sbjct: 20 TTSRMQHQASELQTPVC---PVGDEAALQLARQCLLSGQVIALPTDTVYGLACDANNETA 76
Query: 70 INILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-N 128
I LYEIK RD +KP+AICV I + ++ +S ELL LLPGP+TIV R+ L N
Sbjct: 77 IQRLYEIKGRDEHKPVAICVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSN 136
Query: 129 LELNPNVTKVAVRIPDHKFLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSV 187
LNP+ +K+ +RIPD F+R L + + PLALTSAN S+ PS+L + EF+ LW QL
Sbjct: 137 RFLNPSTSKIGIRIPDFNFIRDLCAVWHEQPLALTSANRSSAPSSLQVVEFRSLWPQLGA 196
Query: 188 VIDGGIISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
V D G I E R ST++DL+ + + IVR GV L ++ ++ + E+
Sbjct: 197 VFDAGQIGLTEERRLASTVIDLATPSYFEIVRAGVALKPTLSLMEEFGIRERK 249
>gi|195429998|ref|XP_002063044.1| GK21591 [Drosophila willistoni]
gi|194159129|gb|EDW74030.1| GK21591 [Drosophila willistoni]
Length = 222
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 139/213 (65%), Gaps = 4/213 (1%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+ V + +A LA QCL G ++ALPTDT+YGLACDA N +AI LYEIK RD +KP+AI
Sbjct: 6 VCSVDEERALDLARQCLLAGQIIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 65
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHK 146
CV I + ++ + ELL LLPGP+TIV R+ L N LNP+ +K+ +RIPD +
Sbjct: 66 CVHNIKALRRYGQADHLGDELLTRLLPGPLTIVIERAPALSNPLLNPSTSKIGIRIPDFQ 125
Query: 147 FLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGST 203
F+R+L + + PLALTSAN S+EPS+L + EF+ LW QL + D G I E R ST
Sbjct: 126 FIRKLCGVWHEQPLALTSANRSSEPSSLQVEEFRCLWPQLGGIFDAGPIGLTEERRLAST 185
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
++DL++ Y+IVR GV + K+L +Y L E
Sbjct: 186 VIDLAKPGSYTIVRAGVALKETRKVLEEYGLKE 218
>gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae]
gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae]
Length = 342
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 135/218 (61%), Gaps = 4/218 (1%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
+ K ++ V D A LA QCL G V+ALPTDT+YGLACDA N +AI LYEIK RD
Sbjct: 119 MEEKKTTVCPVGDETAIPLARQCLLNGEVIALPTDTVYGLACDANNEQAIQRLYEIKGRD 178
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVA 139
+KP+AICV I + ++ +S ELL LLPGP+TIV R+ +L N LNP +K+
Sbjct: 179 EHKPVAICVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTSYLSNRFLNPTTSKIG 238
Query: 140 VRIPDHKFLRQLLKL-MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE 198
+RIPD +F+ L + D PLALTSAN S+ PS+L ++EFQ LW L V D G I E
Sbjct: 239 IRIPDFQFMSDLCAVWQDQPLALTSANRSSAPSSLQVSEFQSLWPHLGAVFDAGRIGLTE 298
Query: 199 --RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHL 234
R ST++DL+ Y IVR GV L ++ +Y +
Sbjct: 299 ERRLASTVIDLATPGYYEIVRAGVALKPTLMLMEEYGI 336
>gi|334329214|ref|XP_001380961.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Monodelphis domestica]
Length = 281
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 128/201 (63%), Gaps = 6/201 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+ G +VA+PTDTLYG+AC A S A+ +Y +K R KPLA+C+ + DI K+
Sbjct: 75 AVTALRAGGLVAVPTDTLYGVACSACCSAALGAVYSLKGRSQTKPLAVCLGGVADIYKYC 134
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
V ELL +LLPGPVT+V RS LN +LNP V +RIPDH F+R L + PL
Sbjct: 135 QVR-VPRELLEDLLPGPVTLVMERSRELNKDLNPFTPLVGIRIPDHAFMRDLAQAFSGPL 193
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSI 215
ALTSAN S++PS+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS Y I
Sbjct: 194 ALTSANISSQPSSLNVKEFQDLWPQLSLVIDGGPIGDVKSPECRLGSTVVDLSVPGKYRI 253
Query: 216 VRKGVCYDKILKILH-KYHLV 235
+R G + IL KY LV
Sbjct: 254 IRPGCALTQTAAILQKKYRLV 274
>gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis]
gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis]
Length = 335
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 133/209 (63%), Gaps = 4/209 (1%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+ +V D A +A QCL G V+ALPTDT+YGLACDA N AI +YEIK RD +KP+AI
Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHK 146
CV+ I + ++ +S ELL LLPGP+TIV R+ L N LNP +K+ +RIPD +
Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTHELSNRFLNPTTSKIGIRIPDFQ 234
Query: 147 FLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGST 203
F+R L + + PLALTSAN S+ PS+L + EF LW QL V D G I + R ST
Sbjct: 235 FIRALCSVWHEQPLALTSANRSSAPSSLQVTEFHSLWPQLGAVFDAGQIGLTEERRLAST 294
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHKY 232
++DL+ Y IVR GV + L+++ +Y
Sbjct: 295 VIDLATPGYYEIVRAGVALKQTLRLVEEY 323
>gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
Length = 335
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 135/211 (63%), Gaps = 4/211 (1%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+ +V D A +A QCL G V+ALPTDT+YGLACDA N AI +YEIK RD +KP+AI
Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHK 146
CV+ I + ++ +S ELL LLPGP+TIV R+ L N LNP +K+ +RIPD +
Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTPELSNRFLNPTTSKIGIRIPDFQ 234
Query: 147 FLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGST 203
F+R L + + PLALTSAN S+ PS+L + EF+ LW QL V D G I + R ST
Sbjct: 235 FIRALCSVWHEQPLALTSANRSSAPSSLQVTEFRSLWPQLGAVFDAGQIGLTEERRLAST 294
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHKYHL 234
++DL+ Y IVR GV + L+++ +Y +
Sbjct: 295 VIDLATPGYYEIVRAGVALKQTLRLVEEYGI 325
>gi|194881657|ref|XP_001974938.1| GG20842 [Drosophila erecta]
gi|190658125|gb|EDV55338.1| GG20842 [Drosophila erecta]
Length = 251
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 136/221 (61%), Gaps = 7/221 (3%)
Query: 16 HNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYE 75
H A L + +C V D A LA QCL G V+ALPTDT+YGLACDA N AI LYE
Sbjct: 26 HQASELRTPVC---PVGDEAALRLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYE 82
Query: 76 IKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPN 134
IK RD +KP+AICV I + ++ +S ELL LLPGP+TIV R+ L N LNP+
Sbjct: 83 IKGRDEHKPVAICVHNIEALRRFGQAVHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPS 142
Query: 135 VTKVAVRIPDHKFLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGI 193
+K+ +RIPD F+R L + + PLALTSAN S+ PS+L ++EF+ LW QL V D G
Sbjct: 143 TSKIGIRIPDFNFMRDLCAVWHEQPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGQ 202
Query: 194 ISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKY 232
I E R ST++DL+ + IVR GV L ++ ++
Sbjct: 203 IGLTEERRLASTVIDLATPGYFEIVRAGVALKPTLSLMEEF 243
>gi|351714219|gb|EHB17138.1| YrdC domain-containing protein, mitochondrial [Heterocephalus
glaber]
Length = 276
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/196 (48%), Positives = 129/196 (65%), Gaps = 5/196 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 75 LRAGAVVAVPTDTLYGLACSASCSAALDAVYRLKGRSEAKPLAVCLGRVADVYRYCHVK- 133
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL ELLPGPVT+V RSE LN +LNP V +RIPDH F+++L ++ PLALTS
Sbjct: 134 VPEELLKELLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQELAQMCGGPLALTS 193
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + + R GST+VDLS + I+R G
Sbjct: 194 ANLSSQASSLKVEEFQDLWPHLSLVIDGGPIGDCQSLECRLGSTVVDLSVPGKFGIIRTG 253
Query: 220 VCYDKILKILHKYHLV 235
++ L KY L+
Sbjct: 254 CALERTTATLQKYGLL 269
>gi|449462123|ref|XP_004148791.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Cucumis sativus]
Length = 281
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 134/199 (67%), Gaps = 3/199 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G V+A+PTDTLYGLACDA +++A++ +YEIK R + PLAICV +++DI ++A
Sbjct: 79 ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEH--LNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T + LL LLPGPVT+V R E L+ LNP + + VR+PD F+R + + ++
Sbjct: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LALTSAN S +PS++C+N+F+ LW + V DGG++ R GSTI+DL+E+ + I+R
Sbjct: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLP-AGRAGSTIIDLTEQGTFKIIR 257
Query: 218 KGVCYDKILKILHKYHLVE 236
G ++ + L +Y L+E
Sbjct: 258 AGSAEEQTIATLERYSLLE 276
>gi|195585167|ref|XP_002082361.1| GD25261 [Drosophila simulans]
gi|194194370|gb|EDX07946.1| GD25261 [Drosophila simulans]
Length = 248
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 136/223 (60%), Gaps = 7/223 (3%)
Query: 14 FYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINIL 73
H L + +C+ V D A LA QCL G V+ALPTDT+YGLACDA N AI L
Sbjct: 21 MQHQTSELRTPVCA---VGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRL 77
Query: 74 YEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELN 132
YEIK RD +KP+AICV I + ++ +S ELL LLPGP+TIV R+ L N LN
Sbjct: 78 YEIKGRDEHKPVAICVHNIEALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLN 137
Query: 133 PNVTKVAVRIPDHKFLRQLLKL-MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDG 191
P+ +K+ +RIPD F+R L + + PLALTSAN S+ PS+L ++EF+ LW QL V D
Sbjct: 138 PSTSKIGIRIPDFNFMRDLCAVWQEQPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDA 197
Query: 192 GIISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKY 232
G I E R ST++DL+ + IVR GV L ++ ++
Sbjct: 198 GRIGLTEERRLASTVIDLATPGYFEIVRAGVALKPTLSLMDEF 240
>gi|50759736|ref|XP_417757.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Gallus
gallus]
Length = 255
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 143/210 (68%), Gaps = 6/210 (2%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
+A A L++G +VA+PTDT+YG+AC A +S+A+ +Y +K R+ KPLAIC+ ++
Sbjct: 47 EAVAAAVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEH 106
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
I ++ + V ELL +LLPGPVT+V RSE LN +LNP + V VRIP+H F+R+L +
Sbjct: 107 IYRYCHVN-VPDELLQDLLPGPVTLVLKRSEELNKDLNPFTSLVGVRIPNHPFIRELARA 165
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEE 210
PLALTSAN S++ STL ++EFQ LW QLS+V+DGG I + PE R GST+VDLS
Sbjct: 166 CPGPLALTSANVSSQASTLTVSEFQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLSVS 225
Query: 211 NVYSIVRKGVCYDKILKIL-HKYHLVEKNT 239
++I+R G ++IL KY LV +++
Sbjct: 226 GKFTIIRPGCALTSTVEILRQKYGLVPESS 255
>gi|326933011|ref|XP_003212603.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Meleagris gallopavo]
Length = 243
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 142/205 (69%), Gaps = 6/205 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VA+PTDT+YG+AC A +S+A+ +Y +K R+ KPLAIC+ ++ +I ++
Sbjct: 40 AVGALQQGGLVAVPTDTVYGVACLAQDSRAVRSIYSLKGRNGTKPLAICLGDVENIYRYC 99
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ V ELL +LLPGPVT+V RSE LN +LNP + V VRIP+H F+R+L + PL
Sbjct: 100 HVN-VPDELLQDLLPGPVTLVLKRSEELNKDLNPFTSLVGVRIPNHPFIRELARACPGPL 158
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSI 215
ALTSAN S++ STL ++EFQ LW QLS+V+DGG I + PE R GST+VDLS ++I
Sbjct: 159 ALTSANVSSQASTLTVSEFQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLSVSGKFTI 218
Query: 216 VRKGVCYDKILKIL-HKYHLVEKNT 239
+R G ++IL KY L+ +++
Sbjct: 219 IRPGCALTSTVEILRQKYGLIPESS 243
>gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia]
gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 16 HNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYE 75
H A L +C+ V D A LA QCL G V+ALPTDT+YGLACDA N AI LYE
Sbjct: 100 HQASELRIPVCA---VGDKAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYE 156
Query: 76 IKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPN 134
IK RD +KP+AICV I+ + ++ +S ELL LLPGP+TIV R+ L N LNP+
Sbjct: 157 IKGRDEHKPVAICVHNISALRRFGQAAHLSDELLTRLLPGPLTIVIERTVQLSNRFLNPS 216
Query: 135 VTKVAVRIPDHKFLRQLLKL-MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGI 193
+K+ +RIPD F+R L + + PLALTSAN S+ PS+L ++EF+ LW QL V D G
Sbjct: 217 TSKIGIRIPDFNFMRDLCGVWQEQPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGR 276
Query: 194 ISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHL 234
I E R ST++DL+ + IVR GV L ++ ++ +
Sbjct: 277 IGLTEERRLASTVIDLATPGYFEIVRAGVALKPTLSLMDEFGI 319
>gi|426218611|ref|XP_004003536.1| PREDICTED: yrdC domain-containing protein, mitochondrial, partial
[Ovis aries]
Length = 249
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 128/196 (65%), Gaps = 5/196 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S+A+ +Y IK R KPLA+C+ + D+ ++
Sbjct: 48 LRAGAVVAVPTDTLYGLACSASCSEALGAVYRIKGRSETKPLAVCLGRVADVYRYCHVR- 106
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTS
Sbjct: 107 VPEELLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHTFMQDLAQVFGGPLALTS 166
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S L + EFQ LW LS++IDGG I + PE R GST+VDLS + I+R G
Sbjct: 167 ANLSSQSSPLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 226
Query: 220 VCYDKILKILHKYHLV 235
+ IL +Y L+
Sbjct: 227 CALESTSAILQEYGLL 242
>gi|170061182|ref|XP_001866124.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus]
gi|167879525|gb|EDS42908.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus]
Length = 242
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
++ + P A L AA L+ G V+ LPTDT+YGLAC A + AI LY+IK R KP+AI
Sbjct: 26 VIDIKSPDAILQAANLLESGKVIGLPTDTVYGLACSANDPAAIKKLYDIKGRICTKPIAI 85
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHK 146
CV E+ D+ W + LL ELLPG VTIV +S +L N LNP V K+ +R+P
Sbjct: 86 CVPEVKDVLYWGKADHLPMGLLQELLPGAVTIVVKKSHYLDNPFLNPGVEKIGIRVPKFN 145
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGSTI 204
F+R + K +P+ALTSAN S++ STL I EF+ LW +L V DGG + E R ST+
Sbjct: 146 FIRNVTKQFKAPMALTSANFSSQKSTLEITEFKALWPELGAVFDGGQLGQSEEQRAASTV 205
Query: 205 VDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
+DLSE + I+R GV + +++L +Y E
Sbjct: 206 IDLSEPRKFEIIRTGVAIKRTIELLKRYRFEE 237
>gi|76781474|ref|NP_783194.2| yrdC domain-containing protein, mitochondrial precursor [Rattus
norvegicus]
gi|123781639|sp|Q499R4.1|YRDC_RAT RecName: Full=YrdC domain-containing protein, mitochondrial;
AltName: Full=Ischemia/reperfusion-inducible protein
homolog; Flags: Precursor
gi|71681008|gb|AAH99797.1| YrdC domain containing (E.coli) [Rattus norvegicus]
Length = 280
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 137 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + E R GST+VDLS + I+R G
Sbjct: 197 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSG 256
Query: 220 VCYDKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 257 CALENTTAILQGKYGLL 273
>gi|62751448|ref|NP_001015837.1| yrdC domain containing [Xenopus (Silurana) tropicalis]
gi|58476879|gb|AAH90125.1| yrdC domain containing [Xenopus (Silurana) tropicalis]
Length = 238
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 137/200 (68%), Gaps = 5/200 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L++G V+A+PTDT+YG+AC A NS++I+ +Y +K R+ KPLAICV + DI ++
Sbjct: 40 LQQGGVIAVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVDDIYRYCQVR- 98
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V +LL +LLPGPVT+V RS+ LN ELNP + V VRIPDH F+RQL ++ PLALTS
Sbjct: 99 VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTS 158
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGII---SNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ STL + EF+ LW +LS+V+DGG I S+PE R GST+VDLS ++++R G
Sbjct: 159 ANISSQDSTLTVEEFRDLWPKLSLVVDGGPIGELSSPECRLGSTVVDLSVPGKFTVIRDG 218
Query: 220 VCYDKILKILHKYHLVEKNT 239
+ IL + + N+
Sbjct: 219 CALTSTVDILTNTYGLLPNS 238
>gi|312375719|gb|EFR23031.1| hypothetical protein AND_13789 [Anopheles darlingi]
Length = 247
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 3/216 (1%)
Query: 27 SIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLA 86
+++ +TD A AA L+ G V+ALPTDT+YGLAC A N AI LY IK R KP+A
Sbjct: 25 ALIAITDGSAIRQAANLLESGQVIALPTDTVYGLACSANNPAAIQKLYAIKGRHEQKPVA 84
Query: 87 ICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDH 145
ICV++ D+ W + LL +LLPG VTIV +S HL N LNP + K+ +RIPD
Sbjct: 85 ICVADFDDLRYWGQADHLPDALLRQLLPGAVTIVVRKSLHLDNPFLNPGIEKIGIRIPDF 144
Query: 146 KFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGST 203
KF+R + + P+ALTSAN+S STL ++EFQ LWS L V DGG + S+ +R ST
Sbjct: 145 KFIRDVSRAFRYPIALTSANKSACQSTLNVHEFQCLWSSLGAVFDGGQLGQSDEQRAAST 204
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
++DLSE+ Y ++R GV + ++ +++ ++
Sbjct: 205 VIDLSEDGSYQLIRAGVAAEHTKAVVERFNFFAADS 240
>gi|56972134|gb|AAH88428.1| Yrdc protein [Rattus norvegicus]
Length = 272
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 70 LRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 128
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 129 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTS 188
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + E R GST+VDLS + I+R G
Sbjct: 189 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSG 248
Query: 220 VCYDKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 249 CALENTTAILQGKYGLL 265
>gi|149023911|gb|EDL80408.1| ischemia/reperfusion inducible protein [Rattus norvegicus]
Length = 263
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 61 LRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 119
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 120 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTS 179
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + E R GST+VDLS + I+R G
Sbjct: 180 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSG 239
Query: 220 VCYDKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 240 CALENTTAILQGKYGLL 256
>gi|410927444|ref|XP_003977156.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Takifugu rubripes]
Length = 234
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 138/198 (69%), Gaps = 2/198 (1%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+CLK+G VVALPTDT+YGLAC A NS+AI +Y+IK R+ KPLAICV +I D+ + +
Sbjct: 36 KCLKEGHVVALPTDTIYGLACLAQNSEAIRKIYDIKGRNQQKPLAICVGQIQDVYNYCNV 95
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
V LL +LLPGPVT+VF RS+ LN +LNP + V VRIP H F+R+L ++ PLAL
Sbjct: 96 -LVQKSLLHDLLPGPVTLVFERSDVLNTDLNPFTSLVGVRIPQHDFMRRLCQMCGEPLAL 154
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
TSAN S+ ST+ ++EFQ+LW L+VV+DGG + R GST+VDLS Y I+R+G
Sbjct: 155 TSANISSHTSTVAVHEFQELWPNLAVVVDGGPVGGQSRLGSTVVDLSVRGKYRIIRQGCA 214
Query: 222 YDKILKIL-HKYHLVEKN 238
+ +L HK+ L++ +
Sbjct: 215 LTSTIDVLEHKHGLLQNS 232
>gi|351542198|ref|NP_001082498.2| yrdC domain containing [Xenopus laevis]
Length = 259
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 137/200 (68%), Gaps = 5/200 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L++G V+ +PTDT+YG+AC A NS++I+ +Y +K R+ KPLAICV + DI ++ +
Sbjct: 61 LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN- 119
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V +LL +LLPGPVT+V RS+ LN ELNP + V VRIPDH F+RQL ++ PLALTS
Sbjct: 120 VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTS 179
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGII---SNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ STL + EF+ LW +LS+V+DGG I S+PE R GST+VDLS ++++R G
Sbjct: 180 ANISSQESTLTVEEFRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFTVIRDG 239
Query: 220 VCYDKILKILHKYHLVEKNT 239
+ IL + + N+
Sbjct: 240 CALTHTVDILSNSYGLLPNS 259
>gi|49118602|gb|AAH73618.1| LOC398509 protein [Xenopus laevis]
Length = 236
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 137/200 (68%), Gaps = 5/200 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L++G V+ +PTDT+YG+AC A NS++I+ +Y +K R+ KPLAICV + DI ++ +
Sbjct: 38 LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN- 96
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V +LL +LLPGPVT+V RS+ LN ELNP + V VRIPDH F+RQL ++ PLALTS
Sbjct: 97 VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTS 156
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGII---SNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ STL + EF+ LW +LS+V+DGG I S+PE R GST+VDLS ++++R G
Sbjct: 157 ANISSQESTLTVEEFRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFTVIRDG 216
Query: 220 VCYDKILKILHKYHLVEKNT 239
+ IL + + N+
Sbjct: 217 CALTHTVDILSNSYGLLPNS 236
>gi|391338994|ref|XP_003743838.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Metaseiulus occidentalis]
Length = 222
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 136/210 (64%), Gaps = 5/210 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + LLA L V+A+PTDT+YG+A A + +A+ LY IK RD KP+AICV I
Sbjct: 13 DAPSVLLARSVLLSHGVLAVPTDTVYGVAGLAQSVRAVRRLYSIKGRDPLKPVAICVGRI 72
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
DI KWA+ TVS LL LLPG VT++F RS LN ELNP+ VA+R+P+ ++R L
Sbjct: 73 ADIHKWAEV-TVSGNLLECLLPGAVTLIFKRSAQLNPELNPDTDLVAIRVPNSAYIRALC 131
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNP----ERFGSTIVDLS 208
+ +D+PLALTSAN S+E STL ++EF+ LW L +V+DGG + +R GSTI+DLS
Sbjct: 132 QSVDAPLALTSANVSSERSTLKVDEFRDLWPSLDLVLDGGTLCQGSEERQRQGSTIIDLS 191
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKN 238
E +++VR G C + + L K L K+
Sbjct: 192 EPGTFNVVRNGCCLESTMATLLKSGLRLKD 221
>gi|242011385|ref|XP_002426431.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510536|gb|EEB13693.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 244
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 132/195 (67%), Gaps = 2/195 (1%)
Query: 27 SIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLA 86
SI+ + + AA AA L +G V+A+PTDT+YG+A N+ + LYEIKKRD+NKPL+
Sbjct: 17 SIISILEVSAASTAANLLFEGKVIAIPTDTIYGIAASTQNNYGLKKLYEIKKRDLNKPLS 76
Query: 87 ICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
ICVS+ ++I W +T ++ LL +LLPGPVTIV R LN +NPN + +RIP+
Sbjct: 77 ICVSDTSEIKLWGETSHLNERLLEDLLPGPVTIVLKRKGLLNSFVNPNTDLIGIRIPNTN 136
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNP--ERFGSTI 204
F++ L +L P+ALTSAN S E S + IN+F LW +L + DGG+ISN +R GST+
Sbjct: 137 FVQALSRLCTVPIALTSANISFEQSPIEINDFIHLWPKLDAIFDGGVISNSPLQRAGSTV 196
Query: 205 VDLSEENVYSIVRKG 219
VDLSE Y+I+R+G
Sbjct: 197 VDLSEPGHYNIIREG 211
>gi|344287230|ref|XP_003415357.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Loxodonta africana]
Length = 280
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 130/200 (65%), Gaps = 6/200 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASCSAALGDVYRLKGRSEAKPLAVCLGRVADVYRYCHVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L+++ PLALTS
Sbjct: 137 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLVQVFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+V+LS + I+R G
Sbjct: 197 ANLSSQASSLNVKEFQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVNLSVPGKFGIIRPG 256
Query: 220 VCYDKILKIL-HKYHLVEKN 238
+ IL KY L+ +
Sbjct: 257 CALESTTAILQQKYGLLPSD 276
>gi|291408762|ref|XP_002720685.1| PREDICTED: ischemia/reperfusion inducible protein [Oryctolagus
cuniculus]
Length = 280
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 127/196 (64%), Gaps = 6/196 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S+A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V +LL +LLPGPVT+V RSE LN +LNP V VRIP H F++ L ++ PLALTS
Sbjct: 137 VPEQLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGVRIPAHAFMQDLAQMFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIIS---NPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I +PE R GST+VDLS + I+R G
Sbjct: 197 ANLSSQASSLNVQEFQDLWPHLSLVIDGGPIGEGQSPECRLGSTVVDLSVPGKFGIIRPG 256
Query: 220 VCYDKILKIL-HKYHL 234
+ IL KY L
Sbjct: 257 CALESTTAILQQKYGL 272
>gi|158285728|ref|XP_308435.3| AGAP007397-PA [Anopheles gambiae str. PEST]
gi|157020133|gb|EAA04653.3| AGAP007397-PA [Anopheles gambiae str. PEST]
Length = 272
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 134/210 (63%), Gaps = 3/210 (1%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
++ A +A L+ G V+A+PTDT+YGL C A N +AI+ LY IK R KP+AI
Sbjct: 59 VISTNRKDAKAIAVAKLQAGEVIAIPTDTVYGLTCSANNPEAIHRLYNIKGRHELKPVAI 118
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNL-ELNPNVTKVAVRIPDHK 146
CV+ I D+ +W +T ++ ELL EL PG VT+V RS LN LNP V + +RI ++K
Sbjct: 119 CVASIEDVRQWGETDHLNDELLGELFPGAVTLVVRRSSKLNNPALNPGVANIGIRITENK 178
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGI--ISNPERFGSTI 204
F++ + + P+ALTSAN+S+ STL + EF++LW +L V DGG +S +R ST+
Sbjct: 179 FIQHVCEAFQQPIALTSANKSSSKSTLNVEEFKELWGELGAVFDGGQLGLSEEQRAASTV 238
Query: 205 VDLSEENVYSIVRKGVCYDKILKILHKYHL 234
+DLSE Y I+R GV +KI+K + +++
Sbjct: 239 IDLSEPERYKIIRWGVSVEKIIKTVERHNF 268
>gi|226500320|ref|NP_001148954.1| ischemia/reperfusion inducible protein [Zea mays]
gi|195623606|gb|ACG33633.1| ischemia/reperfusion inducible protein [Zea mays]
Length = 275
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L A + +G V+A+PTDT+YG ACDA ++ A+N +YEIK R +PLAICV +++DI +
Sbjct: 74 LKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISR 133
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLM 155
+A + LL LLPGPVTIV R E+ LE LNP + + VR+PD F+R +++
Sbjct: 134 FALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIVRGT 193
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S LALTSAN S +PS++C+ +F+ LW S V DGG++ + R GSTIVDL VY I
Sbjct: 194 GSALALTSANLSGQPSSVCVKDFEGLWPHCSYVFDGGVLPS-GRAGSTIVDLITPGVYKI 252
Query: 216 VRKGVCYDKILKILHKYHLVE 236
+R G + +L K+ VE
Sbjct: 253 LRDGSSRKETAAVLGKFGFVE 273
>gi|431891070|gb|ELK01947.1| YrdC domain-containing protein, mitochondrial [Pteropus alecto]
Length = 280
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSANCSAALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+ LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTS
Sbjct: 137 LPEGLLKDLLPGPVTLVMERSEELNKDLNPLTPLVGIRIPDHAFMQDLAQMFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S+ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 197 ANLSSHASSLNVEEFQDLWPQLSLVIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 256
Query: 220 VCYDKILKIL-HKYHLV 235
+ +L KY L+
Sbjct: 257 CALESTTAVLQQKYGLL 273
>gi|395830153|ref|XP_003788199.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Otolemur
garnettii]
Length = 275
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G V+A+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 77 LRAGAVLAVPTDTLYGLACSASCSAALRDVYRLKGRSEAKPLAVCLGRVADVYRYCHVR- 135
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +LLPGPVT+V R+E LN +LNP V +RIPDH F++ L ++ PLALTS
Sbjct: 136 VPEELLKDLLPGPVTLVMERTEALNKDLNPFTPLVGIRIPDHTFMQDLSQMFGEPLALTS 195
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 196 ANLSSQASSLNVEEFQHLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 255
Query: 220 VCYDKILKIL-HKYHLV 235
++ IL KY L+
Sbjct: 256 CALERTTAILQQKYRLL 272
>gi|223946371|gb|ACN27269.1| unknown [Zea mays]
gi|414865373|tpg|DAA43930.1| TPA: ischemia/reperfusion inducible protein [Zea mays]
Length = 275
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 3/201 (1%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L A + +G V+A+PTDT+YG ACDA ++ A+N +YEIK R +PLAICV +++DI +
Sbjct: 74 LKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISR 133
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLM 155
+A + LL LLPGPVTIV R E+ LE LNP + + VR+PD F+R + +
Sbjct: 134 FALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGT 193
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S LALTSAN S +PS++C+ +F+ LW S V DGG++ + R GSTIVDL VY I
Sbjct: 194 GSALALTSANLSGQPSSVCVKDFEGLWPHCSYVFDGGVLPS-GRAGSTIVDLITPGVYKI 252
Query: 216 VRKGVCYDKILKILHKYHLVE 236
+R G + +L K+ VE
Sbjct: 253 LRDGSSRKETAAVLGKFGFVE 273
>gi|224104509|ref|XP_002313460.1| predicted protein [Populus trichocarpa]
gi|222849868|gb|EEE87415.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 131/200 (65%), Gaps = 3/200 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK G V+A+PTDTLYG ACDA + +A+N +YE+K R PLAICV +++ I +A
Sbjct: 30 AIEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEMKGRKHTSPLAICVGDVSQIQHFA 89
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T + LL LLPGPVT++ R E LE LNP + V VR+PD F+R + + +
Sbjct: 90 VTEYLPHGLLDSLLPGPVTVILRRGESSALEKSLNPGLDSVGVRVPDCNFIRVVARGLGK 149
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ALTSAN S +PS+LCI +F+ LW++ + V DGG++ + R GSTIVDL+ Y I+R
Sbjct: 150 AVALTSANLSGQPSSLCIKDFENLWNRCAYVYDGGVLPS-NRAGSTIVDLTRPGKYKILR 208
Query: 218 KGVCYDKILKILHKYHLVEK 237
G ++ L IL K+ LVE+
Sbjct: 209 PGSAKEETLAILEKHSLVEE 228
>gi|356539446|ref|XP_003538209.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Glycine max]
Length = 290
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 141/240 (58%), Gaps = 3/240 (1%)
Query: 2 RLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLA 61
RL+L G + A ++ C V A A + LK G V+A+PTDTLYG A
Sbjct: 51 RLQLCQGLRKGFSKNMACSVSVDNCDTVHPATDAYAGEAVEALKAGKVIAVPTDTLYGFA 110
Query: 62 CDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVF 121
CDA + +A+N +YEIK R P+AICV +++DI ++A T + LL LLPGPVT+V
Sbjct: 111 CDACSMEAVNRIYEIKGRRHTSPVAICVGDVSDIARFAVTDHLPHGLLDSLLPGPVTVVL 170
Query: 122 NRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ 179
R + LE LNP + VR+PD F+R + + + LALTSAN S +PS+L I +F+
Sbjct: 171 KRGDSSILERSLNPGFDSIGVRVPDCNFIRIIARGSGTALALTSANLSGQPSSLSIKDFE 230
Query: 180 KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
LW + V DGG+I + R GSTIVDL+ + Y I+R G ++ + IL K+ VE T
Sbjct: 231 NLWEHCAFVYDGGLIPS-SRAGSTIVDLTTPHKYRILRPGSAKEETVAILEKHSFVEAET 289
>gi|57032998|gb|AAH88928.1| LOC496333 protein, partial [Xenopus laevis]
Length = 204
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 135/200 (67%), Gaps = 5/200 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L++G V+ +PTDT+YG+AC A NS++I+ +Y +K R+ KPLAICV + DI ++ +
Sbjct: 6 LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCQVN- 64
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V +LL +LLPGPVT+V RS LN ELNP + V VRIPDH F+RQL ++ PLALTS
Sbjct: 65 VPDQLLRDLLPGPVTLVMERSGRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTS 124
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGII---SNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ STL + EF+ LW +LS+V+DGG I S+PE R GST+VDLS + ++R G
Sbjct: 125 ANISSQESTLTVEEFRDLWPKLSLVVDGGPIGEVSSPECRLGSTVVDLSVPGKFIVIRDG 184
Query: 220 VCYDKILKILHKYHLVEKNT 239
+ IL + + N+
Sbjct: 185 CSLIPTVDILTNTYGLLPNS 204
>gi|255578866|ref|XP_002530287.1| Protein SUA5, putative [Ricinus communis]
gi|223530185|gb|EEF32094.1| Protein SUA5, putative [Ricinus communis]
Length = 233
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 132/202 (65%), Gaps = 3/202 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK G V+A+PTDTLYG ACDA + +A+N +YEIK R PLAIC+ +++DI +A
Sbjct: 31 AVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICIGDVSDIKHFA 90
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T + LL LLPG VT+V NR E LE LNP + + VR+PD F+R++ +
Sbjct: 91 VTDHLPNGLLDSLLPGAVTVVLNRGESSALEKSLNPGLDTIGVRVPDCNFIREIAHGLGR 150
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ALTSAN S +PS++CI +F+ LW + V DGG++ + R GST+VDLS Y I+R
Sbjct: 151 AVALTSANLSGKPSSVCIKDFENLWEHCAYVYDGGVLPSG-REGSTVVDLSRLGKYKILR 209
Query: 218 KGVCYDKILKILHKYHLVEKNT 239
G ++ ++IL K+ LVE+ T
Sbjct: 210 PGSAKEETVEILEKHSLVEEVT 231
>gi|156399845|ref|XP_001638711.1| predicted protein [Nematostella vectensis]
gi|156225834|gb|EDO46648.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 130/198 (65%), Gaps = 4/198 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G V+ALPTDT+YG+A + A+ LYEIK R KP+AI V I D+ +W
Sbjct: 23 AVASLKLGHVIALPTDTIYGIAALTQSCNAVQKLYEIKGRHQEKPVAIAVGNIEDVKRWG 82
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
TVS ++L +LLPGPVT+VF R+ LN LNP T + +RIP+H F+R+L K P+
Sbjct: 83 KV-TVSDDILTDLLPGPVTLVFERTPELNPSLNPGTTLIGIRIPNHHFVRKLAKACAEPI 141
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN-PE-RFGSTIVDLSEENVYSIVR 217
ALTSAN+S+ S+L + EF+ LW L +V+DGG + + PE R GST+++LS +SI+R
Sbjct: 142 ALTSANQSSAMSSLKVEEFKSLWPHLDLVVDGGPVGDSPECRQGSTVINLSVPGQFSIIR 201
Query: 218 KGVCYDKILKILH-KYHL 234
+G Y + L +L KY L
Sbjct: 202 EGSAYQQTLDVLEAKYGL 219
>gi|427787315|gb|JAA59109.1| Putative translation factor [Rhipicephalus pulchellus]
Length = 250
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
Query: 36 AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
AA AA LK G V+A+PTDT+YG+A A +S+++ L+++K+RD KP+AICV ++ DI
Sbjct: 45 AAKEAASILKAGGVIAVPTDTIYGVAALAQHSESVARLFQLKRRDAGKPVAICVHDVADI 104
Query: 96 PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
+WA+ ++ LL +L PGPVT VF R+ LN LNP V VR+PD F+RQ KL
Sbjct: 105 SQWAEV-SIPENLLRQLFPGPVTAVFCRTPRLNPALNPFTNLVGVRVPDSDFIRQTTKLC 163
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVY 213
PLALTSAN S+E STL I EFQ LW L V DGG +S R GST++D S +
Sbjct: 164 GGPLALTSANVSSEMSTLTIQEFQSLWPFLDAVFDGGDLSVSGFHREGSTVIDFSLPGCF 223
Query: 214 SIVRKGVCYDKILKILHKYHLVE 236
I+R+G ++L + HL E
Sbjct: 224 RILREGCVPHLCRRLLLESHLKE 246
>gi|332017466|gb|EGI58189.1| YrdC domain-containing protein, mitochondrial [Acromyrmex
echinatior]
Length = 263
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 132/204 (64%), Gaps = 5/204 (2%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
++ +A + L++G V+A+PTDT+YGLAC A +S AI LYEIK+RD KPLAIC+S + +
Sbjct: 55 RSVAMAVELLQQGKVIAVPTDTVYGLACLAADSHAIQRLYEIKQRDERKPLAICLSNVKE 114
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
+ W + +L +LLPGP TI R+ LN LNP + V +R+P+ KF+R + ++
Sbjct: 115 VGIWGIIDNIPAGMLKDLLPGPYTICLRRTPALNKNLNPGIDTVGIRVPNDKFIRSVAQI 174
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS----NPERFGSTIVDLSEE 210
+ PLALTSAN SNE S+L NEF+ LW +L V S + R GST+VD+S+
Sbjct: 175 V-GPLALTSANVSNELSSLHPNEFRALWPELDGVFHSSTNSKKQTDARRIGSTVVDVSKL 233
Query: 211 NVYSIVRKGVCYDKILKILHKYHL 234
YSI+R+G+ I++IL KY L
Sbjct: 234 GCYSIMRRGISAHVIIRILEKYRL 257
>gi|225435305|ref|XP_002285123.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Vitis
vinifera]
gi|297746251|emb|CBI16307.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 138/226 (61%), Gaps = 10/226 (4%)
Query: 19 IALPSKM-------CSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAIN 71
++ P KM +V+ A A + +K G V+A+PTDTLYG ACDA +S+A+N
Sbjct: 42 VSFPKKMEAVMGSELGVVRPATDAHAEEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVN 101
Query: 72 ILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE- 130
+YEIK R PLAICV ++ DI ++A T + LL LLPGPVT+V R E +E
Sbjct: 102 RIYEIKGRKHTSPLAICVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEK 161
Query: 131 -LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVI 189
LNP + + VR+PD F+R + ++ LALTSAN S +PS++CI +F+ LW + V
Sbjct: 162 SLNPGLDSIGVRVPDCDFIRVIAHGSETALALTSANLSGQPSSVCIKDFENLWEHCAYVY 221
Query: 190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLV 235
DGG++ + R GST+VDLS Y I+R G ++ + IL ++ L+
Sbjct: 222 DGGVLPS-GRAGSTVVDLSRLGKYKILRPGSAMEETVAILERHSLM 266
>gi|242036585|ref|XP_002465687.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor]
gi|241919541|gb|EER92685.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor]
Length = 275
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L A + +G V+A+PTDT+YG ACDA ++ A+N +YEIK R +PLAICV++++DI +
Sbjct: 74 LKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVADVSDISR 133
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLM 155
+A + LL LLPGPVT+V R E+ LE LNP + + VR+PD F+R + +
Sbjct: 134 FALVDHLPHGLLDSLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGA 193
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S LALTSAN S +PS++ + +F+ LW S V DGG++ + R GSTIVDL VY I
Sbjct: 194 GSALALTSANLSGQPSSVSVKDFEGLWPHCSCVFDGGVLPS-GRAGSTIVDLITPGVYKI 252
Query: 216 VRKGVCYDKILKILHKYHLVEKN 238
+R G + +L K+ VE +
Sbjct: 253 LRDGSSRKETAAVLGKFGFVEAS 275
>gi|346466673|gb|AEO33181.1| hypothetical protein [Amblyomma maculatum]
Length = 218
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 3/199 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G V+A+PTDT+YG+A A +S A+ L+++K+RD KP+AICV ++ DI WA
Sbjct: 17 AASILRAGGVIAVPTDTIYGVAALAQHSDAVLRLFQLKRRDAGKPVAICVHDVADISLWA 76
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ ++ LL +L PGPVT VF R+ LN LNP V VR+PD F+R+ K PL
Sbjct: 77 EV-SIPETLLRQLFPGPVTAVFCRTPRLNPALNPLTNLVGVRVPDSDFIRETAKRCGGPL 135
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSIVR 217
ALTSAN S+E STL + EFQ LW L+ V DGG +S R GST++D S + I+R
Sbjct: 136 ALTSANVSSEMSTLTVKEFQSLWPHLNAVFDGGDLSVSGFHREGSTVIDFSLPGCFRILR 195
Query: 218 KGVCYDKILKILHKYHLVE 236
+G + K+L ++HL E
Sbjct: 196 EGCVPHQCRKLLQEFHLKE 214
>gi|346472809|gb|AEO36249.1| hypothetical protein [Amblyomma maculatum]
Length = 251
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 3/199 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G V+A+PTDT+YG+A A +S A+ L+++K+RD KP+AICV ++ DI WA
Sbjct: 50 AASILRAGGVIAVPTDTIYGVAALAQHSDAVLRLFQLKRRDAGKPVAICVHDVADISLWA 109
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ ++ LL +L PGPVT VF R+ LN LNP V VR+PD F+R+ K PL
Sbjct: 110 EV-SIPETLLRQLFPGPVTAVFCRTPRLNPALNPLTNLVGVRVPDSDFIRETAKRCGGPL 168
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSIVR 217
ALTSAN S+E STL + EFQ LW L V DGG +S R GST++D S + I+R
Sbjct: 169 ALTSANVSSEMSTLTVKEFQSLWPHLDAVFDGGDLSVSGFHREGSTVIDFSLPGCFRILR 228
Query: 218 KGVCYDKILKILHKYHLVE 236
+G + K+L ++HL E
Sbjct: 229 EGCVPHQCRKLLQEFHLKE 247
>gi|443706491|gb|ELU02517.1| hypothetical protein CAPTEDRAFT_171446 [Capitella teleta]
Length = 246
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 144/236 (61%), Gaps = 10/236 (4%)
Query: 3 LRLHSF-----FTLGLFYHNAIALPSKMCSIVKVTDPKAALL--AAQCLKKGCVVALPTD 55
LRL F F L +++ A+ + I K+ ++L+ A Q L++ ++A+PTD
Sbjct: 4 LRLRCFTPKHLFEKTLSVYSSAAMSPHIDKIGKILTDSSSLICRACQALQEEGIIAVPTD 63
Query: 56 TLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPG 115
T+YG+A A + A+ LY+ K R P++ICV++I DI KW T+S LL +LLPG
Sbjct: 64 TIYGIAGLAQSPNAVLSLYQTKGRASTNPMSICVADIEDIYKWGKV-TISQSLLTQLLPG 122
Query: 116 PVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCI 175
PVT+VF R+ LN +LNP V V +RIP++ F+R + + PLALTSAN+S S L I
Sbjct: 123 PVTVVFQRTPELNPQLNPGVPLVGIRIPNYNFVRNICRSAGGPLALTSANKSGGLSPLNI 182
Query: 176 NEFQKLWSQLSVVIDGGII--SNPERFGSTIVDLSEENVYSIVRKGVCYDKILKIL 229
EF+ LWS LSV+ DGG + S +R GST+VDLS + Y I+R G + + +L
Sbjct: 183 EEFRDLWSNLSVICDGGTLAMSEKDRLGSTVVDLSSKGHYRIIRSGSAEKETVGLL 238
>gi|442758887|gb|JAA71602.1| Putative yrdc domain protein [Ixodes ricinus]
Length = 246
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
Query: 27 SIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLA 86
S V T+ A AA L+ G +VALPTDT+YG+A A NS+++ LY +K+RD KP+A
Sbjct: 35 SAVYRTESGEAQAAADILRSGGIVALPTDTIYGVAALAQNSESVEKLYRLKRRDAGKPIA 94
Query: 87 ICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
ICV + +I +WA ++ +LL L PG VT VF R+ LN LNP V VR+P+
Sbjct: 95 ICVHDADEISRWAQV-SIPKKLLHHLFPGAVTAVFQRTRELNPNLNPLTPLVGVRVPNSN 153
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTI 204
F+RQ+ + PLALTSAN S+E STL I EFQ LW L V DGG + R GST+
Sbjct: 154 FIRQVTRCCGEPLALTSANVSSEMSTLSIQEFQALWPHLDAVFDGGNLGLDGFNREGSTV 213
Query: 205 VDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
V+ S + I+R+G + + ++L + L+E
Sbjct: 214 VNFSIPGPFEIIRRGCAFQETKELLGGFQLLE 245
>gi|340717268|ref|XP_003397107.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
isoform 1 [Bombus terrestris]
gi|340717270|ref|XP_003397108.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
isoform 2 [Bombus terrestris]
Length = 268
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 125/191 (65%), Gaps = 15/191 (7%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+A L+K ++A+PTDT+YGLAC +++ AI LYEIKKRDV+KPL+ICVS D+ W
Sbjct: 65 VAVALLQKNEIIAVPTDTIYGLACLVSSTSAIEKLYEIKKRDVDKPLSICVSNFKDVQTW 124
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
V LL+ LLPGP TI+ R+ LN LNPN V +R+P HKF+R++ ++ P
Sbjct: 125 GVVDHVPISLLSWLLPGPYTIILKRTPALNPALNPNHDTVGIRVPHHKFIRRVTEIA-GP 183
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF---------GSTIVDLSE 209
LALTSAN SNEPS +C +EF+ LW++L GGI + ++F GSTI+DL+E
Sbjct: 184 LALTSANISNEPSCICASEFENLWNKL-----GGIFHSSKKFDKASNYFRQGSTIIDLTE 238
Query: 210 ENVYSIVRKGV 220
Y I+R G+
Sbjct: 239 PGRYKIIRYGI 249
>gi|322799894|gb|EFZ21035.1| hypothetical protein SINV_05462 [Solenopsis invicta]
Length = 239
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 132/204 (64%), Gaps = 5/204 (2%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
++ +AA+ L++G V+ALPTDT+YGLAC AT++ AI LYEIK+RD KPLAIC+S + +
Sbjct: 31 RSIAMAAEMLRQGKVIALPTDTVYGLACLATDTCAIQRLYEIKRRDEGKPLAICLSNVKE 90
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
+ W + +L +LLPGP TI R+ LN LNP V V +R+PD+KF+R + ++
Sbjct: 91 VGTWGILDDIPANMLEQLLPGPYTICLRRTPALNRALNPGVDTVGIRVPDNKFIRSVAQI 150
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEE 210
PLALTSAN S+EPS+L EF+ LWS++ + + R GST+VD+S+
Sbjct: 151 A-GPLALTSANVSSEPSSLNPYEFRALWSEVDGIFHDSNNCRKQIDQRRVGSTVVDISKP 209
Query: 211 NVYSIVRKGVCYDKILKILHKYHL 234
+++VR G+ + I+ L KY L
Sbjct: 210 GCFTVVRHGINANLIIGKLRKYKL 233
>gi|307212489|gb|EFN88220.1| YrdC domain-containing protein, mitochondrial [Harpegnathos
saltator]
Length = 243
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 133/200 (66%), Gaps = 4/200 (2%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA L++ V+A+PTDT+YGLAC A++++AI LY+IKKRD KP+AIC+S + D+ +W
Sbjct: 40 IAATLLQQNKVIAVPTDTIYGLACLASSTEAIERLYQIKKRDERKPVAICLSNVKDVTQW 99
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A T + LL +LLPGP TI+ +LN LNP++ + +R+P +F+R + K++ P
Sbjct: 100 AVTDNLPSCLLEKLLPGPYTIILKHKSNLNPALNPDIDNIGIRVPSSRFMRSIAKIV-GP 158
Query: 159 LALTSANESNEPSTLCINEFQKLWSQL-SVVIDGGII--SNPERFGSTIVDLSEENVYSI 215
+ALTSAN SN+PSTL +EF LW +L + D + +N R GST+VDLS+ Y I
Sbjct: 159 IALTSANISNKPSTLYPDEFSMLWPELDGIFYDLTCMKRTNAHRVGSTVVDLSQPGFYKI 218
Query: 216 VRKGVCYDKILKILHKYHLV 235
VR G+ IL I+ K L+
Sbjct: 219 VRHGIAAHIILGIMQKAGLI 238
>gi|326431169|gb|EGD76739.1| yrdC domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 388
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L+ G V+ +PTDT+YGLAC A +++ + +Y IK R KP+AICV ++ I +A
Sbjct: 104 AVETLRAGGVIGVPTDTIYGLACLAQSTQGVRRIYSIKGRSELKPIAICVHDVAAIGAYA 163
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ +V LL LLPGPVT+V R LN ELNP+ + + VR+PD F+R+L++ + PL
Sbjct: 164 EL-SVPERLLRALLPGPVTVVLPRKPALNPELNPHTSLIGVRVPDFPFVRKLVQALGEPL 222
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGSTIVDLSEENVYSIVR 217
ALTSAN S E S + +EF LW +L+ V D G I S R GST+VDLS Y ++R
Sbjct: 223 ALTSANRSGEQSCISSSEFSHLWGELNAVYDAGTIETSGASRLGSTVVDLSRGKAYQVIR 282
Query: 218 KGVCYDKILKILHKYHL 234
G + L LH + L
Sbjct: 283 GGSAEEATLATLHAHGL 299
>gi|357120440|ref|XP_003561935.1| PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein,
mitochondrial-like [Brachypodium distachyon]
Length = 273
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 126/199 (63%), Gaps = 3/199 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +G V+A+PTDT+YG ACDA +++A+N +YEIK R +PLAICVS++ DI ++A
Sbjct: 75 AIDAINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIXARPLAICVSDVPDISRFA 134
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ LL LLPGPVT+V R E+ LE LNP + + VR+P+ F+R + + S
Sbjct: 135 VVDHLPHGLLHSLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPNLDFIRSIARGAGS 194
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LALTSAN S PS++ + +F LW S V DGGI+ + R GSTIVDL VY I+R
Sbjct: 195 ALALTSANLSGRPSSVNVKDFGDLWPNCSYVFDGGILPS-GRAGSTIVDLITPGVYKILR 253
Query: 218 KGVCYDKILKILHKYHLVE 236
G D+ +L ++ VE
Sbjct: 254 DGSSRDETTAVLGQFGFVE 272
>gi|115495697|ref|NP_001069018.1| yrdC domain-containing protein, mitochondrial precursor [Bos
taurus]
gi|122145558|sp|Q0VC80.1|YRDC_BOVIN RecName: Full=YrdC domain-containing protein, mitochondrial; Flags:
Precursor
gi|111307172|gb|AAI20308.1| YrdC domain containing (E. coli) [Bos taurus]
gi|296488877|tpg|DAA30990.1| TPA: yrdC domain-containing protein, mitochondrial precursor [Bos
taurus]
Length = 276
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 128/196 (65%), Gaps = 5/196 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S+A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 75 LRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYCHVR- 133
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTS
Sbjct: 134 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTS 193
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS++IDGG I + PE R GST+VDLS + I+R G
Sbjct: 194 ANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 253
Query: 220 VCYDKILKILHKYHLV 235
+ IL +Y L+
Sbjct: 254 CALESTSAILQEYGLL 269
>gi|327284453|ref|XP_003226952.1| PREDICTED: hypothetical protein LOC100555097 [Anolis carolinensis]
Length = 499
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 127/189 (67%), Gaps = 5/189 (2%)
Query: 45 KKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTV 104
+ G +VALPTDT+YG+AC A +S+A+ LY +K RD KPLA+C+ ++ + ++ V
Sbjct: 91 RGGGLVALPTDTVYGVACLAEDSRALEALYRLKGRDPGKPLAVCLPDLDVLHRFCKVQ-V 149
Query: 105 SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
LL +LLPGPVT+V RSE LN +LNP V VRIP+H F R+L ++ +PLALTSA
Sbjct: 150 PEGLLQDLLPGPVTLVLERSEALNPDLNPFTPLVGVRIPNHWFARELARICAAPLALTSA 209
Query: 165 NESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGV 220
N S++ STL + EFQ+LW LS+V+DGG + + PE R GST+VDLS + ++R G
Sbjct: 210 NPSHKGSTLDVTEFQELWPHLSLVVDGGPLGDTHSPESRLGSTVVDLSVPGKFRVIRPGC 269
Query: 221 CYDKILKIL 229
+ L IL
Sbjct: 270 ALSQTLDIL 278
>gi|297793617|ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
lyrata]
gi|297310528|gb|EFH40952.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
lyrata]
Length = 284
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 127/197 (64%), Gaps = 3/197 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +K V+A+PTDTLYG ACDA + +A+N +YEIK R + PLAICV ++ DI + A
Sbjct: 79 AIEAIKSEKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVLDIKRVA 138
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T+ + LL LLPGPVTIV R E LE LNP + + VR+PD +F+R++ + S
Sbjct: 139 TTNHLPHGLLDSLLPGPVTIVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGSGS 198
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LALTSAN S + S++C+ +F+ LW + V DGG++ + R GSTIVDL++ Y I+R
Sbjct: 199 VLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPS-GRAGSTIVDLTKAGKYKIIR 257
Query: 218 KGVCYDKILKILHKYHL 234
G + IL KY L
Sbjct: 258 PGSAKQATVVILEKYLL 274
>gi|125542795|gb|EAY88934.1| hypothetical protein OsI_10418 [Oryza sativa Indica Group]
Length = 274
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 3/201 (1%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
+ A + +G V+A+PTDT+YG ACDA +++A+N +YEIK R +PLAICV+++ DI +
Sbjct: 73 MKAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAICVADVPDISR 132
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLM 155
+A + LL LLPGPVT+V R + LE LNP + + VR+PD F+R + +
Sbjct: 133 FAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDFDFIRAISRGA 192
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S LALTSAN S PS++ + +F+ LW S V DGGI+ + R GSTIVDL VY I
Sbjct: 193 GSALALTSANLSGRPSSVNVKDFEDLWPHCSYVFDGGILPS-GRAGSTIVDLITPGVYKI 251
Query: 216 VRKGVCYDKILKILHKYHLVE 236
+R G + +L K+ VE
Sbjct: 252 LRDGSSRQETTAVLGKFGFVE 272
>gi|108706710|gb|ABF94505.1| yrdC protein, putative, expressed [Oryza sativa Japonica Group]
gi|125585293|gb|EAZ25957.1| hypothetical protein OsJ_09812 [Oryza sativa Japonica Group]
gi|215695443|dbj|BAG90626.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 274
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 3/201 (1%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
+ A + +G V+A+PTDT+YG ACDA +++A+N +YEIK R +PLAICV+++ DI +
Sbjct: 73 MKAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAICVADVPDISR 132
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLM 155
+A + LL LLPGPVT+V R + LE LNP + + VR+PD F+R + +
Sbjct: 133 FAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDFDFIRAISRGA 192
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S LALTSAN S PS++ + +F+ LW S V DGGI+ + R GSTIVDL VY I
Sbjct: 193 GSALALTSANLSGHPSSVNVKDFEDLWPHCSYVFDGGILPS-GRAGSTIVDLITPGVYKI 251
Query: 216 VRKGVCYDKILKILHKYHLVE 236
+R G + +L K+ VE
Sbjct: 252 LRDGSSRQETTAVLGKFGFVE 272
>gi|196005123|ref|XP_002112428.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens]
gi|190584469|gb|EDV24538.1| hypothetical protein TRIADDRAFT_25776, partial [Trichoplax
adhaerens]
Length = 219
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 131/209 (62%), Gaps = 13/209 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK-- 97
A + L+ G ++ALPTDT+YG+A A A++ LY K R + P++ICV ++ D+ +
Sbjct: 5 AKESLQAGNIIALPTDTIYGIAALAQLPNAVDKLYNTKGRRRDNPISICVGDVADLKRQV 64
Query: 98 ----WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
W V LL +LLPGPVT+VF R LN +LNPN V +RIPD F+R++ +
Sbjct: 65 HLRPWCSV-CVCDALLYDLLPGPVTLVFQRHPVLNPKLNPNTNLVGIRIPDFPFIREVAR 123
Query: 154 LMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS-----NPERFGSTIVDLS 208
D PLALTSAN+S S+L I+EFQ LW QL V+ DGG IS R GST+++LS
Sbjct: 124 ACDQPLALTSANKSLALSSLAIDEFQSLWDQLDVIFDGGRISQSGDDQSSRLGSTVINLS 183
Query: 209 EENVYSIVRKGVCYDKILKIL-HKYHLVE 236
E + I+RKG ++ +K+L +KY L+E
Sbjct: 184 VEGYFKIIRKGSAFENTVKLLVNKYGLIE 212
>gi|307186184|gb|EFN71890.1| YrdC domain-containing protein, mitochondrial [Camponotus
floridanus]
Length = 248
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 129/204 (63%), Gaps = 5/204 (2%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
++ ++AAQ L++G ++A+PTDT+YGLA A N A+ LYEIK+RD +KPLAIC+S + +
Sbjct: 36 RSVVMAAQLLQQGKIIAIPTDTIYGLAGVAVNPLAVQRLYEIKRRDGSKPLAICLSNVKE 95
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
I W V +L LLPGP TI R+ L NP V +R+PD+KF+R + K+
Sbjct: 96 IGTWGVLDDVPSGMLECLLPGPCTICLRRTSALPKSFNPGQETVGIRVPDNKFVRSVAKI 155
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN----PERFGSTIVDLSEE 210
+ PLALTSAN S+EPS+L +EF+ LW +L V SN R GST+VDLS
Sbjct: 156 V-GPLALTSANISSEPSSLYPDEFRALWPKLDGVFHETSNSNKRLESRRVGSTVVDLSTP 214
Query: 211 NVYSIVRKGVCYDKILKILHKYHL 234
Y IVR G+ + I+ +L+KY L
Sbjct: 215 GYYRIVRHGIAGNIIINVLNKYGL 238
>gi|357472217|ref|XP_003606393.1| YrdC domain-containing protein [Medicago truncatula]
gi|355507448|gb|AES88590.1| YrdC domain-containing protein [Medicago truncatula]
Length = 462
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 129/203 (63%), Gaps = 4/203 (1%)
Query: 19 IALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKK 78
+ L K + TD AA A + LK G V+A+PTDTLYG ACDA + +A+N +YEIK
Sbjct: 10 LGLDVKTGVVHPATDAYAAE-AVETLKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKG 68
Query: 79 RDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVT 136
R PLAICV +++DI ++A T + LL LLPGPVT+V +R E LE LNP
Sbjct: 69 RKHTSPLAICVGDVSDINRFALTDHLPHGLLDSLLPGPVTVVLSRGESSALERSLNPGFD 128
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN 196
+ VR+PD F+R + + + LALTSAN S +PS++CI +F+KLW + V DGG++ +
Sbjct: 129 SIGVRVPDCNFIRLIARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCASVYDGGLLPS 188
Query: 197 PERFGSTIVDLSEENVYSIVRKG 219
R GST+VDLS Y I+R G
Sbjct: 189 -GRAGSTVVDLSTPYKYKILRPG 210
>gi|114325403|gb|AAH08984.3| YRDC protein [Homo sapiens]
Length = 292
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 90 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 148
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 149 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 208
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 209 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 268
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 269 CALESTTAILQQKYGLL 285
>gi|58761510|ref|NP_078916.3| yrdC domain-containing protein, mitochondrial precursor [Homo
sapiens]
gi|426329015|ref|XP_004025541.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Gorilla
gorilla gorilla]
gi|74750410|sp|Q86U90.1|YRDC_HUMAN RecName: Full=YrdC domain-containing protein, mitochondrial;
AltName: Full=Dopamine receptor-interacting protein 3;
AltName: Full=Ischemia/reperfusion-inducible protein
homolog; Short=hIRIP; Flags: Precursor
gi|30691316|gb|AAO41711.1| YRDC protein [Homo sapiens]
gi|66840171|gb|AAH80186.2| YrdC domain containing (E. coli) [Homo sapiens]
gi|119627722|gb|EAX07317.1| yrdC domain containing (E. coli), isoform CRA_a [Homo sapiens]
Length = 279
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 77 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 135
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 136 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 195
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 196 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 255
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 256 CALESTTAILQQKYGLL 272
>gi|55586836|ref|XP_513328.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pan
troglodytes]
Length = 279
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 77 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 135
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 136 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 195
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 196 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 255
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 256 CALESTTAILQQKYGLL 272
>gi|30909242|gb|AAP37053.1| ischemia/reperfusion inducible protein transcript variant 1 [Homo
sapiens]
gi|30909244|gb|AAP37054.1| ischemia/reperfusion inducible protein transcript variant 2 [Homo
sapiens]
gi|114325461|gb|AAH68057.1| YRDC protein [Homo sapiens]
Length = 270
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 68 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 126
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 127 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 186
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 187 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 246
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 247 CALESTTAILQQKYGLL 263
>gi|73909159|gb|AAH67857.2| YRDC protein [Homo sapiens]
Length = 278
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 76 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 134
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 135 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 194
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 195 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 254
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 255 CALESTTAILQQKYGLL 271
>gi|332248384|ref|XP_003273344.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Nomascus
leucogenys]
Length = 270
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 68 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 126
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 127 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 186
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 187 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 246
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 247 CALESTTAILQQKYGLL 263
>gi|410259458|gb|JAA17695.1| yrdC domain containing [Pan troglodytes]
gi|410297720|gb|JAA27460.1| yrdC domain containing [Pan troglodytes]
Length = 367
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 165 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 223
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 224 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 283
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 284 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 343
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 344 CALESTTAILQQKYGLL 360
>gi|410211606|gb|JAA03022.1| yrdC domain containing [Pan troglodytes]
Length = 367
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 165 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 223
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 224 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 283
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 284 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 343
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 344 CALESTTAILQQKYGLL 360
>gi|307107023|gb|EFN55267.1| hypothetical protein CHLNCDRAFT_35508 [Chlorella variabilis]
Length = 284
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 139/222 (62%), Gaps = 16/222 (7%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
LP+ +C++ LAA+ L + V+A+PTDTLYGLA A +S+ + +Y K+R
Sbjct: 73 LPAALCNVG---------LAAEALGRAEVIAVPTDTLYGLAACARSSQGVAHIYATKRRG 123
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEH--LNLELNPNVTKV 138
+KPLAI V++I D+P++AD + LL +LLPGPVT++ R L + NP V +
Sbjct: 124 DHKPLAIAVADIADVPRFADVQHLPEGLLEDLLPGPVTLLLQRRPDAPLAAQFNPGVGAI 183
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE 198
+RIPD F+R + + + LALTSAN S S++ + EFQ+LW S+V DGG + +
Sbjct: 184 GIRIPDSAFIRAVCRQHRAALALTSANISGSMSSVDVGEFQELWPSCSLVFDGGQL-DAG 242
Query: 199 RFGSTIVDLSEENVYSIVRKGVCYDKILKILH-KY---HLVE 236
R GST++DL++ +S+ R+G + +I+++L KY HL+E
Sbjct: 243 RSGSTVIDLTQPGQFSVARRGAGFARIMQLLQDKYKMQHLME 284
>gi|28278078|gb|AAH45238.1| LOC398509 protein, partial [Xenopus laevis]
Length = 188
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Query: 55 DTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLP 114
DT+YG+AC A NS++I+ +Y +K R+ KPLAICV + DI ++ + V +LL +LLP
Sbjct: 1 DTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN-VPDQLLRDLLP 59
Query: 115 GPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLC 174
GPVT+V RS+ LN ELNP + V VRIPDH F+RQL ++ PLALTSAN S++ STL
Sbjct: 60 GPVTLVMERSDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTSANISSQESTLT 119
Query: 175 INEFQKLWSQLSVVIDGGII---SNPE-RFGSTIVDLSEENVYSIVRKGVCYDKILKILH 230
+ EF+ LW +LS+V+DGG I S+PE R GST+VDLS ++++R G + IL
Sbjct: 120 VEEFRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFTVIRDGCALTHTVDILS 179
Query: 231 KYHLVEKNT 239
+ + N+
Sbjct: 180 NSYGLLPNS 188
>gi|302818656|ref|XP_002991001.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii]
gi|300141332|gb|EFJ08045.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii]
Length = 201
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 120/182 (65%), Gaps = 3/182 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G V+++PTDTLYGLA DA + A+ +Y+IK R+ PLA+CV+++ D+ ++A
Sbjct: 20 AIAALRRGDVISVPTDTLYGLAADACSRVAVERIYDIKGRNAGSPLAVCVADVPDLKRYA 79
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ LL +LLPGPVT+V NR + LE LNP + + +RIPD F+R + + D
Sbjct: 80 RIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPDSDFIRSVARAFDG 139
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LALTSAN S+ PS++C+ EF+ LW Q + V D G +S R GSTIVDL+ E + ++R
Sbjct: 140 ALALTSANTSSRPSSICVEEFEHLWPQCAAVFDAGELS-AGRAGSTIVDLTAEASFKVLR 198
Query: 218 KG 219
G
Sbjct: 199 AG 200
>gi|33339163|gb|AAQ14263.1|AF250397_1 dopamine receptor interacting protein 3, partial [Homo sapiens]
Length = 223
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 21 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 79
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 80 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 139
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 140 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 199
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 200 CALESTTAILQQKYGLL 216
>gi|302802275|ref|XP_002982893.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii]
gi|300149483|gb|EFJ16138.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii]
Length = 201
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 120/182 (65%), Gaps = 3/182 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+ G V+++PTDTLYGLA DA + A+ +YEIK R+ PLA+CV+++ D+ ++A
Sbjct: 20 AIAALRHGDVISVPTDTLYGLAADACSRVALERIYEIKGRNAGSPLAVCVADVPDLKRYA 79
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ LL +LLPGPVT+V NR + LE LNP + + +RIPD F+R + + D
Sbjct: 80 RIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPDSDFIRSVARAFDG 139
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LALTSAN S++PS++C+ EF+ LW Q + V D G +S R GSTIVDL+ E + ++R
Sbjct: 140 ALALTSANTSSKPSSICVEEFEHLWPQCAAVFDAGELS-AGRAGSTIVDLTAEASFKVLR 198
Query: 218 KG 219
G
Sbjct: 199 AG 200
>gi|281349712|gb|EFB25296.1| hypothetical protein PANDA_013165 [Ailuropoda melanoleuca]
Length = 187
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/185 (48%), Positives = 121/185 (65%), Gaps = 6/185 (3%)
Query: 56 TLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPG 115
TLYGLAC A+ S+A+ +Y +K R KPLA+C+ + D+ ++ V LL +LLPG
Sbjct: 1 TLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR-VPEGLLKDLLPG 59
Query: 116 PVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCI 175
PVT+V RSE LN +LNP V +RIPDH F++ L+++ PLALTSAN S++ S+L +
Sbjct: 60 PVTLVLERSEELNKDLNPFTPLVGIRIPDHAFIQDLVQVFGGPLALTSANLSSQASSLNV 119
Query: 176 NEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCYDKILKILH- 230
EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G + ILH
Sbjct: 120 EEFQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPGCALESTTAILHR 179
Query: 231 KYHLV 235
KY L+
Sbjct: 180 KYGLL 184
>gi|403292161|ref|XP_003937123.1| PREDICTED: yrdC domain-containing protein, mitochondrial, partial
[Saimiri boliviensis boliviensis]
Length = 209
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 7 LRAGAVVAVPTDTLYGLACAASCSAALHAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 65
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 66 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 125
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 126 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 185
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 186 CALENTTAILQQKYGLL 202
>gi|297665439|ref|XP_002811084.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pongo
abelii]
Length = 350
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 148 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 206
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 207 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 266
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 267 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 326
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 327 CALESTTAILQQKYGLL 343
>gi|247494089|ref|NP_705794.2| yrdC domain-containing protein, mitochondrial precursor [Mus
musculus]
gi|123794224|sp|Q3U5F4.1|YRDC_MOUSE RecName: Full=YrdC domain-containing protein, mitochondrial;
AltName: Full=Ischemia/reperfusion-inducible protein;
Short=mIRIP; Flags: Precursor
gi|74146564|dbj|BAE32125.1| unnamed protein product [Mus musculus]
Length = 280
Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A++S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 137 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 197 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 256
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 257 CALENTTSILQQKYGLL 273
>gi|359321263|ref|XP_003639549.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Canis lupus familiaris]
Length = 274
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VV +PTDTLYG AC A+ S A++ +Y +K R KPLA+C+ + D+ ++ +
Sbjct: 70 LRSGAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVADVYRYCRV-S 128
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RS+ LN +LNP V VRIPDH F++ L ++ PLALTS
Sbjct: 129 VPEGLLRDLLPGPVTLVLERSQELNRDLNPCTPLVGVRIPDHAFIQDLAQVFGEPLALTS 188
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 189 ANLSSQASSLTVEEFQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPG 248
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 249 CALESTTAILRQKYGLL 265
>gi|350407281|ref|XP_003488043.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Bombus impatiens]
Length = 268
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 129/199 (64%), Gaps = 5/199 (2%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+A L+K ++A+PTDT+YGLAC +++ AI LYEIK+R+V+KPL+ICVS + D+ W
Sbjct: 65 VAVALLQKNEIIAVPTDTIYGLACLVSSTSAIEKLYEIKEREVDKPLSICVSNLKDMQTW 124
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LL+ LLPGP TI+ R+ LN LNPN V +R+P+HKF+R + ++ P
Sbjct: 125 GIVDHIPISLLSCLLPGPYTIILKRTPALNPALNPNHDTVGIRVPNHKFIRHVAEVA-GP 183
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDG----GIISNPERFGSTIVDLSEENVYS 214
LALTSAN SNEPS + +EF+ LW++L + G + + R GSTI+DL+E Y
Sbjct: 184 LALTSANISNEPSCVYASEFENLWNKLGGIFHQSKKLGKMHDCLRRGSTIIDLTEPGCYK 243
Query: 215 IVRKGVCYDKILKILHKYH 233
I+R G+ + +L +Y+
Sbjct: 244 IIRHGIGAIYAVNMLKRYN 262
>gi|23274116|gb|AAH23823.1| YrdC domain containing (E.coli) [Mus musculus]
Length = 263
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A++S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 61 LRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 119
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 120 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTS 179
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 180 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 239
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 240 CALENTTSILQQKYGLL 256
>gi|30908964|gb|AAP37032.1| ischemia/reperfusion inducible protein [Mus musculus]
Length = 263
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A++S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 61 LRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 119
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 120 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTS 179
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 180 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 239
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 240 CALENTTSILQQKYGLL 256
>gi|148698400|gb|EDL30347.1| yrdC domain containing (E.coli) [Mus musculus]
Length = 263
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A++S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 61 LRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 119
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 120 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTS 179
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 180 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 239
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 240 CALENTTSILQQKYGLL 256
>gi|326487440|dbj|BAJ89704.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 274
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 130/220 (59%), Gaps = 12/220 (5%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
LP+ +VK D + G V+A+PTDT+YG ACDA +++A+N +YEIK R
Sbjct: 65 LPASQDHVVKAID---------AINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRI 115
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKV 138
+PLAICV+++ +I ++A + LL LLPGPVT+V R E+ LE LNP + +
Sbjct: 116 HTRPLAICVADVPEISRFAMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSI 175
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE 198
VR+P F+R + + S LALTSAN S PS++ + +F LW S V DGG++ +
Sbjct: 176 GVRVPKLDFIRSIARGAGSALALTSANLSGRPSSVGVKDFGDLWPHCSYVFDGGMLPS-G 234
Query: 199 RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
R GSTIVDL VY I+R G ++ IL + VE +
Sbjct: 235 RAGSTIVDLITPGVYKILRDGSSREETTAILGNFGFVEAS 274
>gi|326521554|dbj|BAK00353.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 214
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 130/220 (59%), Gaps = 12/220 (5%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
LP+ +VK D + G V+A+PTDT+YG ACDA +++A+N +YEIK R
Sbjct: 5 LPASQDHVVKAID---------AINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRI 55
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKV 138
+PLAICV+++ +I ++A + LL LLPGPVT+V R E+ LE LNP + +
Sbjct: 56 HTRPLAICVADVPEISRFAMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSI 115
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE 198
VR+P F+R + + S LALTSAN S PS++ + +F LW S V DGG++ +
Sbjct: 116 GVRVPKLDFIRSIARGAGSALALTSANLSGRPSSVGVKDFGDLWPHCSYVFDGGMLPS-G 174
Query: 199 RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
R GSTIVDL VY I+R G ++ IL + VE +
Sbjct: 175 RAGSTIVDLITPGVYKILRDGSSREETTAILGNFGFVEAS 214
>gi|241557718|ref|XP_002400036.1| YrdC domain-containing protein [Ixodes scapularis]
gi|215499737|gb|EEC09231.1| YrdC domain-containing protein [Ixodes scapularis]
Length = 208
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G +VALPTDT+YG+A A NS+++ LY +K+RD KP+AICV +I +WA
Sbjct: 3 AADILRNGGIVALPTDTIYGVAALAQNSESVEKLYRLKRRDAGKPIAICVHNADEISRWA 62
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++ +LL L PG VT VF R+ LN +LNP V VR+P+ F+RQ+ + PL
Sbjct: 63 QV-SIPEKLLHHLFPGAVTAVFQRTRELNPKLNPLTPLVGVRVPNSDFIRQVTRCCGEPL 121
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVDLSEENVYSIVR 217
ALTSAN S+E STL I EFQ LW L V DGG + R GST+++ S + I+R
Sbjct: 122 ALTSANVSSEMSTLSIQEFQALWPHLDAVFDGGNLGYNGLNREGSTVINFSIPGHFEIIR 181
Query: 218 KGVCYDKILKILHKYHLVEKNT 239
KG K IL + V +++
Sbjct: 182 KGWWVSKFDAILLRIFSVGQSS 203
>gi|356544602|ref|XP_003540738.1| PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein,
mitochondrial-like [Glycine max]
Length = 227
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 124/204 (60%), Gaps = 5/204 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK G V+A+PTDTLYG ACDA + +A+N +YEIK R PLAICV +++DI ++A
Sbjct: 24 AVEALKAGXVIAVPTDTLYGFACDACSLEAVNRIYEIKGRRHTSPLAICVGDVSDIARFA 83
Query: 100 DTHTVSFELLAELLPGPVTIVFNR----SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
T + LL LLPGPV +V R S L LNP + VR+PD F+R +
Sbjct: 84 VTDHLPHGLLDCLLPGPVIVVLKRGXXESSILERSLNPGFDSIGVRVPDCNFIRIIACGS 143
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
+ LALTSAN S + STL I +F+ LW V DGG+I + GST+VDL+ + Y I
Sbjct: 144 GTALALTSANLSGQSSTLSIKDFENLWEHCXFVYDGGLIPS-SLAGSTVVDLTTPHKYKI 202
Query: 216 VRKGVCYDKILKILHKYHLVEKNT 239
+R G ++ + IL K+ LVE T
Sbjct: 203 LRPGSAKEETVAILEKHSLVEAET 226
>gi|9759323|dbj|BAB09832.1| unnamed protein product [Arabidopsis thaliana]
Length = 239
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 127/199 (63%), Gaps = 4/199 (2%)
Query: 23 SKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
SK C + T+ A A + +K V+A+PTDTLYG ACDA + +A++ +YEIK R +
Sbjct: 14 SKSCLVHPATEAYAQE-AIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLT 72
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAV 140
PLAICV ++ DI + A T + LL LLPGPVT+V R E LE LNP + + V
Sbjct: 73 SPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGV 132
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF 200
R+PD +F+R++ + S LALTSAN S + S++C+ +F+ LW + V DGG++ + R
Sbjct: 133 RVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPS-GRA 191
Query: 201 GSTIVDLSEENVYSIVRKG 219
GSTIVDL++ Y I+R G
Sbjct: 192 GSTIVDLTKVGKYKIIRPG 210
>gi|42573748|ref|NP_974970.1| DHBP synthase RibB-like alpha/beta domain-containing protein
[Arabidopsis thaliana]
gi|332009969|gb|AED97352.1| DHBP synthase RibB-like alpha/beta domain-containing protein
[Arabidopsis thaliana]
Length = 288
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 127/199 (63%), Gaps = 4/199 (2%)
Query: 23 SKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
SK C + T+ A A + +K V+A+PTDTLYG ACDA + +A++ +YEIK R +
Sbjct: 63 SKSCLVHPATEAYAQE-AIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLT 121
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAV 140
PLAICV ++ DI + A T + LL LLPGPVT+V R E LE LNP + + V
Sbjct: 122 SPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGV 181
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF 200
R+PD +F+R++ + S LALTSAN S + S++C+ +F+ LW + V DGG++ + R
Sbjct: 182 RVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPS-GRA 240
Query: 201 GSTIVDLSEENVYSIVRKG 219
GSTIVDL++ Y I+R G
Sbjct: 241 GSTIVDLTKVGKYKIIRPG 259
>gi|440908112|gb|ELR58170.1| YrdC domain-containing protein, mitochondrial, partial [Bos
grunniens mutus]
Length = 195
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 5/192 (2%)
Query: 51 ALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLA 110
A+PTDTLYGLAC A+ S+A+ +Y +K R KPLA+C+ + D+ ++ V LL
Sbjct: 1 AVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYCHVR-VPEGLLK 59
Query: 111 ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEP 170
+LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTSAN S++
Sbjct: 60 DLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTSANLSSQS 119
Query: 171 STLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCYDKIL 226
S+L + EFQ LW LS++IDGG I + PE R GST+VDLS + I+R G +
Sbjct: 120 SSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCALESTS 179
Query: 227 KILHKYHLVEKN 238
IL +Y L+ +
Sbjct: 180 AILREYGLLPSH 191
>gi|255071095|ref|XP_002507629.1| predicted protein [Micromonas sp. RCC299]
gi|226522904|gb|ACO68887.1| predicted protein [Micromonas sp. RCC299]
Length = 289
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
+VTD A L++ ++A+PTDTLYGLA A + K+I LY K+R P+AICV
Sbjct: 85 RVTD------AVDALRRERIIAVPTDTLYGLAAGAHSDKSIRRLYAAKRRSETVPIAICV 138
Query: 90 SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNL--ELNPNVTKVAVRIPDHKF 147
S+ D+ ++ADT ++ LL ELLPGPVT++ ++ +L LNPN + +RIP F
Sbjct: 139 SDAKDVERYADTKHLAEGLLDELLPGPVTVLLSQKSSADLPSSLNPNSRLMGIRIPKSDF 198
Query: 148 LRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
+R + + LALTSAN+S STL +NEF +LW + V DGG I + R GS+IVDL
Sbjct: 199 IRAVARQYGHALALTSANQSGSASTLDLNEFTELWDDCAFVFDGGRIVS-GRVGSSIVDL 257
Query: 208 SEENVYSIVRKGVCYDKILKILHKYHLVE 236
S +S+ R+G Y+ K L K+ L +
Sbjct: 258 SLPGTFSVQRRGDKYEDTRKTLMKFGLRQ 286
>gi|406025170|ref|YP_006705471.1| YrdC domain-containing protein [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432769|emb|CCM10051.1| YrdC domain-containing protein, mitochondrial [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
Length = 222
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 122/196 (62%), Gaps = 2/196 (1%)
Query: 36 AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
AA AA L KG ++ALPTDT+YGLAC A N +A+ L++IK+R + P+A+CV I +I
Sbjct: 24 AAQYAATLLHKGGIIALPTDTVYGLACLAQNKQALKRLFQIKERANDNPIALCVGTIQEI 83
Query: 96 PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
K+ + +L LLPGPVT++F ++ + N V +R+P+H F+ Q+ +L
Sbjct: 84 AKYGKVNLKIIPILGNLLPGPVTLLFEAWPSIDQDGIANSHLVGIRMPNHPFIMQVAQLC 143
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVDLSEENVY 213
+ +ALTSAN+S EPS L + EF+ LW L V DGG + +P R GSTI+DLS + +
Sbjct: 144 NGAIALTSANKSKEPSCLNVQEFKPLWCDLDAVFDGGRLGTIDPMRLGSTILDLSIKASF 203
Query: 214 SIVRKGVCYDKILKIL 229
I+R G + + K L
Sbjct: 204 KIIRNGCALNDVKKTL 219
>gi|358338031|dbj|GAA56369.1| YrdC domain-containing protein mitochondrial [Clonorchis sinensis]
Length = 361
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 132/235 (56%), Gaps = 23/235 (9%)
Query: 16 HNAIALPSKMCSIVKVTDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINIL 73
HN I PS M + AA L AQ L+ G VVA+PTDT+YG++C +AI +
Sbjct: 117 HNYI--PSNMTDKIMSLSEAAAQLPHIAQLLRSGAVVAVPTDTIYGVSCSVHCEQAIKRI 174
Query: 74 YEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEH--LNLEL 131
+++K R NKP+AIC+ E+ IP W DT + LL LLPGPVT++ + LN+ L
Sbjct: 175 HQLKGRPTNKPMAICLDEVDSIPYWCDTTGLPQGLLNALLPGPVTLLLPKHSRDPLNVHL 234
Query: 132 NPNVTKVAVRIPDHKFLRQL-----------LKLMDSPLALTSANESNEPSTLCINEFQK 180
NP+ V VR+ DH F+R L + + PL LTSAN S + S L I EF
Sbjct: 235 NPDAHLVGVRVTDHGFVRDLCAALGRLETNGFRSIGHPLVLTSANLSGDASALRIEEFSA 294
Query: 181 LWSQLSVVIDGGIISNP----ERFGSTIVDLS--EENVYSIVRKGVCYDKILKIL 229
+W +L ++IDGG IS R GSTIVDLS + +Y IVR G + ++IL
Sbjct: 295 IWPELDLIIDGGPISTCAKELARSGSTIVDLSSASKGLYHIVRNGSALNSTVQIL 349
>gi|412993969|emb|CCO14480.1| predicted protein [Bathycoccus prasinos]
Length = 293
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 124/211 (58%), Gaps = 13/211 (6%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
A Q LK+G V+A+PTDTLYG ACDA+N++AI LY +K R+ KP+A+CVS ++ K
Sbjct: 81 FAVQALKRGSVIAVPTDTLYGFACDASNAEAIENLYAVKGREKTKPVAVCVSRAEEVKKI 140
Query: 99 AD-THTVSFELLAELLPGPVTIVFNR---SEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
+ + LL +LLPG VT++F R L+ LNPNV V VR+PD F+ +
Sbjct: 141 CELDGKIEESLLRKLLPGAVTLLFKRKWTETTLSKSLNPNVDNVGVRVPDCAFILDVCDA 200
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--------RFGSTIVD 206
D +ALTSAN S +PS + +NEF++L + V DGG I + R GSTIVD
Sbjct: 201 FDGAIALTSANTSGKPSCVDVNEFRELHEKCERVFDGGKIIEDDGSTDSALLRAGSTIVD 260
Query: 207 LSE-ENVYSIVRKGVCYDKILKILHKYHLVE 236
LS+ + + +VR G +L +Y +E
Sbjct: 261 LSKGDGTFHVVRDGCALTNTTSVLLEYGFIE 291
>gi|312075017|ref|XP_003140229.1| yrdC domain-containing protein [Loa loa]
gi|307764605|gb|EFO23839.1| yrdC domain-containing protein [Loa loa]
Length = 232
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 129/209 (61%), Gaps = 13/209 (6%)
Query: 20 ALPSKMCSIVKVTDPKAALLAAQCLK---KGCVVALPTDTLYGLACDATNSKAINILYEI 76
AL ++M I+++++ + +CL+ G +VALPTDTLYG+ +NS LY++
Sbjct: 3 ALTNEMEKIIRLSESTCSATICRCLQIFESGGIVALPTDTLYGVVTTLSNSDK---LYKL 59
Query: 77 KKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
K+R+ KPL + VS + D+ +W T+ L LLPGPVT++F RS L NP
Sbjct: 60 KRRNHLKPLGLFVSNVRDVQRWC-RQTIDNSQLRTLLPGPVTLIFERSTFLPRIFNPEHG 118
Query: 137 KVAVRIPDHKFLRQLL-KLMDSPLALTSANESNEPST-LCINEFQKLWSQLSVVIDGGII 194
V +RIPDH F+R L+ +L D PLA TSAN SN + +CI +F+ LWS+L ++IDGG+I
Sbjct: 119 TVGIRIPDHDFVRSLMTRLDDVPLAQTSANISNNQNNPICIEDFKDLWSELDLIIDGGVI 178
Query: 195 SNPE----RFGSTIVDLSEENVYSIVRKG 219
P+ GST+V+LS YSI+R G
Sbjct: 179 LRPDGKVNHEGSTVVNLSIPGTYSIIRDG 207
>gi|167525667|ref|XP_001747168.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774463|gb|EDQ88092.1| predicted protein [Monosiga brevicollis MX1]
Length = 300
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 120/187 (64%), Gaps = 1/187 (0%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
L++ VVALPTDT+YG+A A ++ A+ LY+IK+RD KP+AICV ++ D+ +A
Sbjct: 90 ALQREAVVALPTDTIYGIAAVAQSATAVQKLYDIKERDPAKPIAICVPKVADVYTYAHV- 148
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
TV ++L +LLPG VT+VF R LN LNP+ + +R+ +H + ++ + +P+ALT
Sbjct: 149 TVPDDVLHQLLPGAVTVVFKRKPALNPLLNPDTDLIGIRVTNHSLTQAIVAGLQAPIALT 208
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCY 222
SAN++ S + +EF+ LW L V+DGG + R GST+VDLS+ ++++R G
Sbjct: 209 SANKAGAASCVQADEFEHLWPALGCVVDGGRLGTGSRLGSTVVDLSKPQTFALLRDGDAE 268
Query: 223 DKILKIL 229
++ +L
Sbjct: 269 QHVVDVL 275
>gi|402853994|ref|XP_003891671.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Papio
anubis]
Length = 279
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 77 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 135
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 136 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 195
Query: 164 ANESNEPSTLCINEFQKLWSQLSVV---IDGGIISNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EF+ LW QLS+V G +PE R GST+VDLS + I+R G
Sbjct: 196 ANLSSQASSLNVEEFRDLWPQLSLVIDGGQIGGGQSPECRLGSTVVDLSVPGKFGIIRPG 255
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 256 CALESTTAILQQKYGLL 272
>gi|297283021|ref|XP_002802371.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like,
partial [Macaca mulatta]
Length = 268
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 66 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 124
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 125 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 184
Query: 164 ANESNEPSTLCINEFQKLWSQLSVV---IDGGIISNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EF+ LW QLS+V G +PE R GST+VDLS + I+R G
Sbjct: 185 ANLSSQASSLNVEEFRDLWPQLSLVIDGGQIGGGQSPECRLGSTVVDLSVPGKFGIIRPG 244
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 245 CALESTTAILQQKYGLL 261
>gi|308799281|ref|XP_003074421.1| yrdC protein-related (ISS) [Ostreococcus tauri]
gi|116000592|emb|CAL50272.1| yrdC protein-related (ISS), partial [Ostreococcus tauri]
Length = 239
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 113/189 (59%), Gaps = 6/189 (3%)
Query: 36 AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
A LA L++G V+A+PTDT+YG A A + A+ LYEIK R +AI V ++ DI
Sbjct: 32 AVALAVGALRRGGVIAVPTDTIYGFAARAEDGAAVRRLYEIKGRKATVAVAIAVGDVGDI 91
Query: 96 PKWADTHTVSFELLAELLPGPVTIVFNR--SEHLNL--ELNPNVTKVAVRIPDHKFLRQL 151
++ + + LL +LPGPVT++ R SE ELNP V + +R+P F+R++
Sbjct: 92 GRYGECSHLREGLLGRILPGPVTVLLRRRASEEGGASSELNPGVDLIGIRVPASDFVREV 151
Query: 152 LKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE-E 210
+ S +ALTSAN S E ST + EF +LW + V DGG+I +R GSTIVDLS +
Sbjct: 152 CRAHGSAIALTSANRSGETSTTSVEEFAELWDACAEVFDGGVIET-KRLGSTIVDLSSTD 210
Query: 211 NVYSIVRKG 219
Y +VR+G
Sbjct: 211 GRYGVVREG 219
>gi|145340914|ref|XP_001415562.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575785|gb|ABO93854.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 195
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 112/196 (57%), Gaps = 6/196 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G V+A+PTDT+YG A A N A+ LYEIK R PLAI V ++ D+ +
Sbjct: 1 AAAALRRGGVIAVPTDTIYGFAASAANGDAVRRLYEIKGRRAGVPLAIAVGDVRDVGTYG 60
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNL----ELNPNVTKVAVRIPDHKFLRQLLKLM 155
D + LA LLPGP T++ R ELNP V + +R+P H F+R++ +
Sbjct: 61 DDGHLREGALARLLPGPTTVLLRRRRGDAGRATPELNPGVDLIGIRVPAHDFVREVCRAH 120
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE-NVYS 214
+ALTSAN S E S EF +LW V DGG I +R GSTIVDLS N ++
Sbjct: 121 GGAIALTSANRSGETSATAAEEFAELWDACDEVFDGGAIP-AKRLGSTIVDLSSRANDFA 179
Query: 215 IVRKGVCYDKILKILH 230
IVR G D+++++L
Sbjct: 180 IVRAGERCDELVRVLE 195
>gi|380798151|gb|AFE70951.1| yrdC domain-containing protein, mitochondrial precursor, partial
[Macaca mulatta]
gi|380798153|gb|AFE70952.1| yrdC domain-containing protein, mitochondrial precursor, partial
[Macaca mulatta]
Length = 223
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 21 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 79
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 80 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 139
Query: 164 ANESNEPSTLCINEFQKLWSQLSVV---IDGGIISNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EF+ LW QLS+V G +PE R GST+VDLS + I+R G
Sbjct: 140 ANLSSQASSLNVEEFRDLWPQLSLVIDGGQIGGGQSPECRLGSTVVDLSVPGKFGIIRPG 199
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 200 CALESTTAILQQKYGLL 216
>gi|355557845|gb|EHH14625.1| hypothetical protein EGK_00582, partial [Macaca mulatta]
Length = 207
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 5 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 63
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 64 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 123
Query: 164 ANESNEPSTLCINEFQKLWSQLSVV---IDGGIISNPE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EF+ LW QLS+V G +PE R GST+VDLS + I+R G
Sbjct: 124 ANLSSQASSLNVEEFRDLWPQLSLVIDGGQIGGGQSPECRLGSTVVDLSVPGKFGIIRPG 183
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 184 CALESTTAILQQKYGLL 200
>gi|380023136|ref|XP_003695383.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Apis
florea]
Length = 268
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 120/195 (61%), Gaps = 15/195 (7%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
++ +A L++ ++A+PTDT+YGLA +++ +I +YEIKKRD +KPL+I +S + D
Sbjct: 62 RSLAVAVTLLQQNEIIAIPTDTIYGLAGIVSSTSSIEKIYEIKKRDKDKPLSISISNVND 121
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
I KWA + LL ++PGP+TI+ R+ LN LNPN V +RIP KFL+ + +
Sbjct: 122 IKKWAIVDHLPQNLLPLIIPGPITIILKRTPALNPALNPNHDTVGIRIPCFKFLQYISDI 181
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF---------GSTIV 205
+ PLALTSAN SNE S L +EFQ LW L GGI + +F GSTIV
Sbjct: 182 V-GPLALTSANLSNEASCLYASEFQNLWPML-----GGIFYDSTKFGKSSTKLRKGSTIV 235
Query: 206 DLSEENVYSIVRKGV 220
DLS+ Y IVR GV
Sbjct: 236 DLSKPGYYEIVRAGV 250
>gi|56755217|gb|AAW25788.1| SJCHGC02454 protein [Schistosoma japonicum]
Length = 268
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 129/228 (56%), Gaps = 35/228 (15%)
Query: 42 QCLKKGC-VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
Q + GC V+ALPTDT+YGLAC N+++I + IK R KP+AIC+ +++ I W D
Sbjct: 36 QLISHGCGVIALPTDTVYGLACSVYNTESIERIRHIKGRSETKPMAICLDQVSHISHWCD 95
Query: 101 THTVSFELLAELLPGPVTIVFNR-----SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
T + LL++LLPGPVT++ R + LN LNP +V +RIPD F+R+L+ +
Sbjct: 96 TKNIPTGLLSDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVGIRIPDSGFIRKLISAL 155
Query: 156 DS------------------PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS-- 195
PL LTSAN S +PS + I EF ++W + ++++GG I
Sbjct: 156 HEQTKLSSTSGNDEYSGGGHPLVLTSANLSGQPSAIQIEEFSEIWPSIDLIVNGGPIQPS 215
Query: 196 ------NPERFGSTIVDL--SEENVYSIVRKGVCYDKILKILH-KYHL 234
+ R GSTI+DL ++++Y +VR G YD + +L +Y+L
Sbjct: 216 LPSVNLDYNRSGSTIIDLCDCDKSIYYVVRSGSAYDATVAVLEDRYNL 263
>gi|198433752|ref|XP_002131934.1| PREDICTED: similar to ischemia/reperfusion inducible protein
isoform 2 [Ciona intestinalis]
gi|198433756|ref|XP_002131919.1| PREDICTED: similar to ischemia/reperfusion inducible protein
isoform 1 [Ciona intestinalis]
Length = 293
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 126/226 (55%), Gaps = 35/226 (15%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA---- 99
L +G +VALPTDTLYG+AC A +++A+ LYEIK R+ KP+AICV ++ + +W
Sbjct: 64 LHRGGIVALPTDTLYGVACLAQSTEAVEKLYEIKARNPLKPVAICVGDLYKVCQWTRFPQ 123
Query: 100 ---------------------DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
+ V + LL +LLPGPVTIV RS LN LNP + V
Sbjct: 124 GLIQSVSKTLGLEDQLDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPSLNNTLNPKTSLV 183
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNP- 197
+R+PDHKF++ L + PLALTSAN S E S+L I +F+ LW +L V+D G +
Sbjct: 184 GIRVPDHKFIKDLTNRLREPLALTSANVSGEESSLRIEDFRSLWPKLDAVVDDGEVGTRY 243
Query: 198 -------ERFGSTIVDLSEENV-YSIVRKGVCYDKILKILH-KYHL 234
+ GST+V + + V + I+R G Y+ + +L KY L
Sbjct: 244 VNKTLQYAKEGSTVVQILNDGVSFKILRPGCAYENTVSVLKCKYGL 289
>gi|402587524|gb|EJW81459.1| YrdC domain-containing protein [Wuchereria bancrofti]
Length = 232
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 13/208 (6%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLK---KGCVVALPTDTLYGLACDATNSKAINILYEIK 77
L ++M I+++++ + +CL+ G +VALPTDTLYG+ +NS LY++K
Sbjct: 4 LTNEMEKIIRLSESTYSAAICRCLQIFESGGIVALPTDTLYGVVTTLSNSDK---LYKLK 60
Query: 78 KRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTK 137
+R KPL + VS + ++ +W T+ L LLPGPVT++F RS L NP
Sbjct: 61 RRSRLKPLGLFVSNVREVQRWCH-QTIDNSQLRTLLPGPVTLIFERSTSLPSIFNPEHGT 119
Query: 138 VAVRIPDHKFLRQLL-KLMDSPLALTSANESNEPST-LCINEFQKLWSQLSVVIDGGII- 194
V +RIPDH F+R L+ +L D PLA TSAN SN+ S+ +CI +F+ LW +L ++ID GI+
Sbjct: 120 VGIRIPDHDFVRSLMTRLDDVPLAQTSANISNDQSSPVCIEDFKDLWPELDLIIDDGIVL 179
Query: 195 ---SNPERFGSTIVDLSEENVYSIVRKG 219
N R GST+V+LS YSI+R G
Sbjct: 180 HRDGNVNREGSTVVNLSIPGTYSIIRDG 207
>gi|170590097|ref|XP_001899809.1| yrdC domain containing protein [Brugia malayi]
gi|158592728|gb|EDP31325.1| yrdC domain containing protein [Brugia malayi]
Length = 232
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 127/209 (60%), Gaps = 13/209 (6%)
Query: 20 ALPSKMCSIVKVTDPKAALLAAQCLK---KGCVVALPTDTLYGLACDATNSKAINILYEI 76
L ++M I+++++ + +CL+ G +VALPTDT+YG+A NS LY++
Sbjct: 3 GLTNEMEKIIRLSESTYSAAICRCLQIFESGGIVALPTDTVYGVATALPNSDK---LYKL 59
Query: 77 KKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
K+R KPL + VS + ++ +W T+ L LLPGPVT++F RS L NP
Sbjct: 60 KRRSRLKPLGLFVSNVREVQRWCH-QTIDNNQLRTLLPGPVTLIFERSTSLPSIFNPEHG 118
Query: 137 KVAVRIPDHKFLRQLL-KLMDSPLALTSANESNEPST-LCINEFQKLWSQLSVVIDGGII 194
V +RIPDH F+R L+ +L D PLA TSAN SN+ S+ +CI +F+ LW +L ++ID GI+
Sbjct: 119 TVGIRIPDHDFVRSLMTRLDDVPLAQTSANISNDQSSPVCIEDFKDLWPELDLIIDDGIV 178
Query: 195 ----SNPERFGSTIVDLSEENVYSIVRKG 219
N R GST+V+LS YSI+R G
Sbjct: 179 FQRDGNVNREGSTVVNLSIPGTYSIIRDG 207
>gi|384251694|gb|EIE25171.1| hypothetical protein COCSUDRAFT_65132 [Coccomyxa subellipsoidea
C-169]
Length = 963
Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats.
Identities = 83/212 (39%), Positives = 126/212 (59%), Gaps = 4/212 (1%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
V D A +AA+ L++G VVA+PTDTLYGLA A + + + LY IK R + PLAIC
Sbjct: 753 VMPADESGAAVAAEALRRGDVVAVPTDTLYGLAACANSEQGVGRLYAIKHRQAHVPLAIC 812
Query: 89 VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNR--SEHLNLELNPNVTKVAVRIPDHK 146
V+++ + ++ + LL +LLPGPVT++ R L+ LNP V + +R+PD
Sbjct: 813 VADVAVVEQYGMCAHLPQGLLDDLLPGPVTVLLARRPDAALSAALNPGVQTIGIRVPDSA 872
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
F+ + + +ALTSAN S S I++F++LW Q + V D GI+ +R GST+VD
Sbjct: 873 FMLEACRQHGRAVALTSANISGAISPTSIHDFEQLWPQCAAVFDAGIVG-ADRAGSTVVD 931
Query: 207 LSEENVYSIVRKGVCYDKILKIL-HKYHLVEK 237
LS E + I+R+G + ++L KY + E+
Sbjct: 932 LSLEGSFRILREGSHPSHVRQVLTEKYGIAEQ 963
>gi|449534023|ref|XP_004173969.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like,
partial [Cucumis sativus]
Length = 175
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 114/173 (65%), Gaps = 5/173 (2%)
Query: 66 NSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSE 125
+++A++ +YEIK R + PLAICV +++DI ++A T + LL LLPGPVT+V R E
Sbjct: 1 SAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE 60
Query: 126 H--LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWS 183
L+ LNP + + VR+PD F+R + + ++ LALTSAN S +PS++C+N+F+ LW
Sbjct: 61 SSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQ 120
Query: 184 QLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
+ V DGG++ R GSTI+DL+E+ + I+R G ++ + L +Y L+E
Sbjct: 121 HCAYVYDGGVLP-AGRAGSTIIDLTEQGTFKIIRAG--KEQTIATLERYSLLE 170
>gi|297822817|ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
lyrata]
gi|297325130|gb|EFH55550.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
lyrata]
Length = 263
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 12/187 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +K V+A+PTDTLYG ACDA + +A+N +YEIK R + PLAICV ++ DI + A
Sbjct: 79 AIEAIKSDKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVFDIKRVA 138
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T+ + LL LLPGPVT+V +R E LE LNP + + +R+PD +F+R++L+ S
Sbjct: 139 TTNHLPHGLLDSLLPGPVTLVLHRGESSILEKSLNPGIGTIGIRVPDCEFIREVLRGSGS 198
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LALTSAN S + S++C+N+F+KLW L +++D +F S V LS++ S+
Sbjct: 199 VLALTSANLSGDRSSVCVNDFEKLWQDLQLLMD-------LKFESLWV-LSKQQWQSL-- 248
Query: 218 KGVCYDK 224
+ +C+ K
Sbjct: 249 RSICWKK 255
>gi|328777852|ref|XP_001120082.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Apis
mellifera]
Length = 270
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 118/197 (59%), Gaps = 17/197 (8%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
++ +A L++ ++A+PTDT+YGLA +++ +I LYEIKKRD +KPL+I V+ I D
Sbjct: 62 RSLAVAITLLQQNEIIAIPTDTIYGLAGIVSSTSSIEKLYEIKKRDKDKPLSISVNNIND 121
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
I KW + +LL+ +LPGP+TI+ R+ LN LNPN V +RIP KF+ +
Sbjct: 122 IKKWGIVDHLPQDLLSLILPGPITIIVKRTPALNPALNPNHDTVGIRIPSFKFI-SYISA 180
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF-----------GST 203
+ PLALTSAN SNE S L +EFQ LW L GGI + F GST
Sbjct: 181 ITGPLALTSANLSNEKSCLYASEFQNLWPML-----GGIFYDSNNFGKSKSKSKSRKGST 235
Query: 204 IVDLSEENVYSIVRKGV 220
IVDLS+ Y IVR G+
Sbjct: 236 IVDLSKPGYYKIVRAGI 252
>gi|256072137|ref|XP_002572393.1| hypothetical protein [Schistosoma mansoni]
gi|353233472|emb|CCD80827.1| hypothetical protein Smp_127100 [Schistosoma mansoni]
Length = 287
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 144/282 (51%), Gaps = 62/282 (21%)
Query: 21 LPSKMC-------------SIVKVTDPKAALLAAQCL--KKGCVVALPTDTLYGLACDAT 65
+PSK+C I+ V D L A L + VVALPTDT+YGLAC
Sbjct: 1 MPSKLCHLLTNFYPTIMNNKIINVKDASLNLNAIVQLISQNDGVVALPTDTIYGLACSVF 60
Query: 66 NSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNR-S 124
N++AI + IK R KP+AIC+ +++ I W DT + LL++LLPGPVT++ R S
Sbjct: 61 NTEAIERIRRIKGRSETKPMAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFS 120
Query: 125 EHLNLE-----LNPNVTKVAVRIPDHKFLRQLLKLMDS---------------------- 157
+ L LN +V +RIPD F+R+L+ ++
Sbjct: 121 DRLQDPLSTRLLNLGDKRVGIRIPDSGFIRKLISALNEQTRSSSIIGNNVEHSSGCDERD 180
Query: 158 --------PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--------SNPERFG 201
PL LTSAN S +PS + I EF ++WS + ++I+GG I S+ R G
Sbjct: 181 SISISGGHPLVLTSANLSGQPSAIQIEEFSEIWSSIDLIINGGPIQSDIFSGNSDCSRAG 240
Query: 202 STIVDL--SEENVYSIVRKGVCYDKILKILH-KYHLVEKNTF 240
STI+DL +++VYS+VR G Y+ + IL +Y+L + F
Sbjct: 241 STIIDLCNCDKSVYSVVRNGSAYNATVAILEGRYNLSLSDNF 282
>gi|324522067|gb|ADY47983.1| YrdC domain-containing protein [Ascaris suum]
Length = 208
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 13/204 (6%)
Query: 25 MCSIVKVTDPK---AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV 81
M I+++TD A A L+ G V+ALPTDT+YGL+ N+ + L+++K R
Sbjct: 1 MDKIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNA---DKLFKLKFRSR 57
Query: 82 NKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVR 141
KP A+ +S++T+I KWA T+ + LLPGPVT+VFNRS L E N + +R
Sbjct: 58 MKPFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFNRSSRLPAEFNEGHRTIGIR 116
Query: 142 IPDHKFLRQLLK-LMDSPLALTSANESNEPST-LCINEFQKLWSQLSVVIDGGIISNP-- 197
IPDH F+ L K L D+PLA TSAN S + + +F+ LW + ++IDG ++ +P
Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVEDFEDLWPGVDLIIDGDVLKDPTG 176
Query: 198 --ERFGSTIVDLSEENVYSIVRKG 219
R GST+V+L YSI+R G
Sbjct: 177 KVSRRGSTVVNLCIPGTYSIIRDG 200
>gi|324523357|gb|ADY48235.1| YrdC domain-containing protein [Ascaris suum]
Length = 226
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 13/204 (6%)
Query: 25 MCSIVKVTDPK---AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV 81
M I+++TD A A L+ G V+ALPTDT+YGL+ N+ + L+++K R
Sbjct: 1 MDKIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNA---DKLFKLKFRSR 57
Query: 82 NKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVR 141
KP A+ +S++T+I KWA T+ + LLPGPVT+VFNRS L E N + +R
Sbjct: 58 MKPFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFNRSSRLPAEFNEGHRTIGIR 116
Query: 142 IPDHKFLRQLLK-LMDSPLALTSANESNEPST-LCINEFQKLWSQLSVVIDGGIISNP-- 197
IPDH F+ L K L D+PLA TSAN S + + +F+ LW + ++IDG ++ +P
Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVEDFEDLWPGVDLIIDGDVLKDPTG 176
Query: 198 --ERFGSTIVDLSEENVYSIVRKG 219
R GST+V+L YSI+R G
Sbjct: 177 KVSRRGSTVVNLCIPGTYSIIRDG 200
>gi|355729581|gb|AES09915.1| yrdC domain containing [Mustela putorius furo]
Length = 160
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 102/158 (64%), Gaps = 6/158 (3%)
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
KPLA+C+ + D+ ++ V LL +LLPGPVT+V RSE LN +LNP V +RI
Sbjct: 1 KPLAVCLGRVADVYRYCHVR-VPEGLLKDLLPGPVTLVLERSEELNKDLNPFTPLVGIRI 59
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE- 198
PDH F++ L+++ PLALTSAN S++ S+L + EFQ LW QLS+VIDGG I N PE
Sbjct: 60 PDHAFIQDLVQVFGGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGPIGNGQSPEY 119
Query: 199 RFGSTIVDLSEENVYSIVRKGVCYDKILKIL-HKYHLV 235
R GST+VDLS + I+R G + IL KY L+
Sbjct: 120 RLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGLL 157
>gi|115451395|ref|NP_001049298.1| Os03g0201600 [Oryza sativa Japonica Group]
gi|113547769|dbj|BAF11212.1| Os03g0201600, partial [Oryza sativa Japonica Group]
Length = 183
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 3/174 (1%)
Query: 65 TNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRS 124
++++A+N +YEIK R +PLAICV+++ DI ++A + LL LLPGPVT+V R
Sbjct: 9 SSAEAVNRIYEIKGRVQTRPLAICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRG 68
Query: 125 EHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW 182
+ LE LNP + + VR+PD F+R + + S LALTSAN S PS++ + +F+ LW
Sbjct: 69 NNSILERSLNPGLESIGVRVPDFDFIRAISRGAGSALALTSANLSGHPSSVNVKDFEDLW 128
Query: 183 SQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
S V DGGI+ + R GSTIVDL VY I+R G + +L K+ VE
Sbjct: 129 PHCSYVFDGGILPS-GRAGSTIVDLITPGVYKILRDGSSRQETTAVLGKFGFVE 181
>gi|395526590|ref|XP_003765443.1| PREDICTED: yrdC domain-containing protein, mitochondrial
[Sarcophilus harrisii]
Length = 369
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 89/137 (64%), Gaps = 5/137 (3%)
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +LLPGPVT+V RS LN +LNP V +RIPDH F+R L++ PLALTS
Sbjct: 226 VPRELLEDLLPGPVTLVMERSGELNKDLNPFTPLVGIRIPDHPFMRDLVQKFSGPLALTS 285
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++PS+L + EFQ LW LS+VIDGG I + PE R GST+VDLS Y I+R G
Sbjct: 286 ANISSQPSSLNVKEFQDLWPHLSLVIDGGPIGDVKSPECRLGSTVVDLSVPGKYRIIRPG 345
Query: 220 VCYDKILKILH-KYHLV 235
+ IL KY LV
Sbjct: 346 CALTQTAAILQKKYSLV 362
>gi|449273138|gb|EMC82746.1| YrdC domain-containing protein, mitochondrial, partial [Columba
livia]
Length = 152
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 95/139 (68%), Gaps = 5/139 (3%)
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +LLPGPVT+V RSE LN +LNP + V VRIP+H F+R+L + PLALTS
Sbjct: 7 VPDELLRDLLPGPVTLVLKRSEELNKDLNPFTSLVGVRIPNHPFIRELARACPGPLALTS 66
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S + STL ++EFQ+LW QLS++IDGG I + PE R GST+VDLS ++I+R G
Sbjct: 67 ANISCQASTLTVSEFQELWPQLSLIIDGGPIGDIQSPECRLGSTVVDLSVSGKFTIIRPG 126
Query: 220 VCYDKILKIL-HKYHLVEK 237
++IL KY L+ +
Sbjct: 127 CALASTVEILRQKYGLIPE 145
>gi|449019426|dbj|BAM82828.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 258
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
AA+ L+ G ++ALPTDT+YGLA A NS I +LY+ K+RD+ KPLAI V + D+ +
Sbjct: 31 FAARLLRVGEIIALPTDTVYGLAAAARNSHGIELLYQTKQRDLRKPLAIAVPSVEDVSVY 90
Query: 99 ADTHTVSFELLAELLPGPVTIVF-NRSEHLNLELN-----------------PNVT---- 136
T + LL +LPGP+T++ R +++ ++L PN+
Sbjct: 91 LHTEHLPPGLLEAILPGPLTLLLRQREDYVGIDLQDVRIDQYRGWERAKRLAPNLNLRRD 150
Query: 137 -KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS 195
+ VR+PD F + + + PLALTSAN S ++EF+ LWS + V DGG +
Sbjct: 151 GLLGVRVPDASFACAVSRELGDPLALTSANVSGRGDCGSVDEFRALWSACAAVFDGGAMP 210
Query: 196 NPERFGSTIVDLSEENVYSIVRKGVCYDKILKIL-HKYHLVEKNT 239
P ST+VDLS + I R G +++IL +K+ L K+
Sbjct: 211 KPV-MPSTVVDLSVPGTFRITRAGWMATDLVRILENKFGLTNKSA 254
>gi|168009850|ref|XP_001757618.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691312|gb|EDQ77675.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 154
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L V+A+PTDTLYGLACDA++++AI +YEIK+R ++ PLA+CVS++ + +
Sbjct: 10 AVRALGNEQVIAVPTDTLYGLACDASSAEAIRRVYEIKERKLSSPLAVCVSDVDVVAAYG 69
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSE--HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+T + LL LLPG VT++ R E L+ LNP + + +RIPD F+R + +
Sbjct: 70 ETAQLPAGLLNALLPGAVTLLLPRREPGFLSASLNPGIGSIGIRIPDSDFIRGVARSFGG 129
Query: 158 PLALTSANESNEPSTLCINEFQKLW 182
+ALTSAN S+ ST+ I EF+ LW
Sbjct: 130 AVALTSANTSSHASTVRIEEFEHLW 154
>gi|449687608|ref|XP_002169716.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like,
partial [Hydra magnipapillata]
Length = 143
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 2/138 (1%)
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
T+S +L +LLPGPVT+VF RS LN LNP + VRIP F++ L + P+ALT
Sbjct: 5 TISDNVLEDLLPGPVTLVFQRSSLLNSYLNPTSNSIGVRIPKCAFIQTLAQKCQQPIALT 64
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYSIVRKGV 220
SAN S+ S+L INEF++LW +L +++DGG + + E R GST+VDL++E ++I+R+G
Sbjct: 65 SANISSAMSSLDINEFEELWPKLDLIVDGGTLGSSEQSRLGSTVVDLTKEGEFTIIREGC 124
Query: 221 CYDKILKILHKYHLVEKN 238
Y++++ ILHKY N
Sbjct: 125 AYNEVVNILHKYGFKNSN 142
>gi|119627723|gb|EAX07318.1| yrdC domain containing (E. coli), isoform CRA_b [Homo sapiens]
Length = 239
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 89/133 (66%), Gaps = 5/133 (3%)
Query: 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTSAN S
Sbjct: 100 LLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLS 159
Query: 168 NEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCYD 223
++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G +
Sbjct: 160 SQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCALE 219
Query: 224 KILKIL-HKYHLV 235
IL KY L+
Sbjct: 220 STTAILQQKYGLL 232
>gi|410966954|ref|XP_003989989.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Felis
catus]
Length = 169
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Query: 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTSAN S
Sbjct: 30 LLKDLLPGPVTLVLERSEELNKDLNPFTRLVGIRIPDHAFIQDLAQVFGGPLALTSANLS 89
Query: 168 NEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKGVCYD 223
++ S+L + EFQ LW QLS++IDGG I + + R GST+VDLS + I+R G +
Sbjct: 90 SQASSLNVEEFQDLWPQLSLIIDGGPIGDGQSSEYRLGSTVVDLSVPGKFGIIRPGCALE 149
Query: 224 KILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 150 RTTAILQQKYGLL 162
>gi|260789486|ref|XP_002589777.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae]
gi|229274960|gb|EEN45788.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae]
Length = 145
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 90/141 (63%), Gaps = 3/141 (2%)
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
ELL +LLPGPVT+V R+ LN LNP+ V +R+P HKF+RQL + P+ALTSAN
Sbjct: 1 MELLQDLLPGPVTVVMQRTAALNTNLNPSTDLVGIRVPQHKFMRQLAETCMEPIALTSAN 60
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYSIVRKGVCYD 223
S +T+ I EF+ LW QL +V+DGG + + + R GST+VDLS E + ++R G Y
Sbjct: 61 TSAAGNTIDIQEFENLWPQLDLVLDGGRLESTQAVREGSTVVDLSVEGQFRVLRVGCAYM 120
Query: 224 KILKIL-HKYHLVEKNTFPIP 243
+ +L +KY L + + IP
Sbjct: 121 STVDVLANKYDLTDITEYVIP 141
>gi|308480641|ref|XP_003102527.1| hypothetical protein CRE_04025 [Caenorhabditis remanei]
gi|308261259|gb|EFP05212.1| hypothetical protein CRE_04025 [Caenorhabditis remanei]
Length = 215
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 114/199 (57%), Gaps = 8/199 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +G +VALPTDTLYG++ S + LY +K+R KPL I + T + K
Sbjct: 21 AVSVFLRGGIVALPTDTLYGISTLLPFS---DRLYALKQRPFEKPLGIFLPSPTSM-KLV 76
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T+S EL LLPGPVT++F R +L E NP V VA R+PD + ++ + + PL
Sbjct: 77 SKQTISDELANCLLPGPVTLMFERLPNLPDEFNPGVVNVACRVPDCAIVSRICRKLGQPL 136
Query: 160 ALTSANESNEP-STLCINEFQKLWSQLSVVIDGG-IISNPERFGSTIVDLSEENVYSIVR 217
A TSAN S P + I+ F+ L S + +++D G I+S+ E GSTIVDL+ E+ + IVR
Sbjct: 137 AQTSANVSGSPLNPTSIDHFKNLHSNIDLILDNGQIVSSGE--GSTIVDLTVESCFRIVR 194
Query: 218 KGVCYDKILKILHKYHLVE 236
G + +K L + L E
Sbjct: 195 SGCAESETIKKLKSFGLTE 213
>gi|444706893|gb|ELW48210.1| Metal regulatory transcription factor 1 [Tupaia chinensis]
Length = 900
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/133 (48%), Positives = 87/133 (65%), Gaps = 5/133 (3%)
Query: 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
LL +LLPGPVT+V R+E LN +LNP V +RIPDH F++ L ++ PLALTSAN S
Sbjct: 762 LLKDLLPGPVTLVMERTEELNQDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTSANLS 821
Query: 168 NEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKGVCYD 223
++ S+L + EF+ LW QLS+VIDGG I + + R GST+VDLS + I+R G +
Sbjct: 822 SQASSLNVEEFRDLWPQLSLVIDGGPIGDSQNPVCRLGSTVVDLSVPGKFGIIRAGCALE 881
Query: 224 KILKIL-HKYHLV 235
IL KY L+
Sbjct: 882 NTTAILQQKYGLL 894
>gi|341892285|gb|EGT48220.1| hypothetical protein CAEBREN_06828 [Caenorhabditis brenneri]
Length = 215
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 112/199 (56%), Gaps = 8/199 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +G +VALPTDTLYG++ S + LY +K+R KPL I + T + K
Sbjct: 21 AVSVFLRGGIVALPTDTLYGISTLLPYS---DRLYALKQRPFEKPLGIFLPSPTSM-KLV 76
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T+S EL LLPGPVT++F R L E NP V VA R+PD + ++ + + PL
Sbjct: 77 SKQTISDELANCLLPGPVTLMFERLPTLPAEFNPGVLNVACRVPDCPIVSRICRKLGQPL 136
Query: 160 ALTSANESNEP-STLCINEFQKLWSQLSVVIDGG-IISNPERFGSTIVDLSEENVYSIVR 217
A TSAN S P + I+ F+ L S + +++D G IIS+ E GSTIVDL+ E+ Y I+R
Sbjct: 137 AQTSANVSGSPLNPTSIDHFKNLHSNIDLILDNGRIISSGE--GSTIVDLTVESSYRIIR 194
Query: 218 KGVCYDKILKILHKYHLVE 236
G ++ L + L E
Sbjct: 195 SGCAEKDTVEKLEMFGLTE 213
>gi|268532948|ref|XP_002631602.1| Hypothetical protein CBG20783 [Caenorhabditis briggsae]
Length = 216
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +G +VALPTDTLYG++ S + LY +K+R KPL I + T + K
Sbjct: 22 AVSVFLRGGIVALPTDTLYGISTLLPFS---DRLYALKQRPFEKPLGIFLPSPTSM-KLV 77
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T+S EL LLPGPVT++F R L E NP V VA R+PD + + + + PL
Sbjct: 78 SKQTISDELANCLLPGPVTLMFERLPTLPAEFNPGVANVACRVPDCPIVSMICRKLGQPL 137
Query: 160 ALTSANESNEP-STLCINEFQKLWSQLSVVIDGG-IISNPERFGSTIVDLSEENVYSIVR 217
A TSAN S P + I+ F+ L + +++D G I+S E GSTIVDL+ E+ + IVR
Sbjct: 138 AQTSANVSGSPLNPTSIDHFKDLQPYIDLILDNGQIVSTGE--GSTIVDLTVESKFRIVR 195
Query: 218 KGVCYDKILKILHKYHLVE 236
G + +K L + L E
Sbjct: 196 SGCAEKETMKTLKSFGLTE 214
>gi|341892431|gb|EGT48366.1| hypothetical protein CAEBREN_20292 [Caenorhabditis brenneri]
Length = 219
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 8/201 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +G +VALPTDTLYG++ S + LY +K+R KPL I + T + K
Sbjct: 21 AVSVFLRGGIVALPTDTLYGISTLLPYS---DRLYALKQRPFEKPLGIFLPSPTSM-KLV 76
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T+S EL LLPGPVT++F R L E NP V VA R+PD + ++ + + PL
Sbjct: 77 SKQTISDELANCLLPGPVTLMFERLPTLPAEFNPGVLNVACRVPDCPIVSRICRKLGQPL 136
Query: 160 ALTSANESNEP-STLCINEFQKLWSQLSVVIDGG-IISNPERFGSTIVDLSEENVYSIVR 217
A TSAN S P + I+ F+ L S + +++D G IIS+ E GSTIVDL+ E+ Y I+R
Sbjct: 137 AQTSANVSGSPLNPTSIDHFKNLHSNIDLILDNGRIISSGE--GSTIVDLTVESSYRIIR 194
Query: 218 KGVCYDKILKILHKYHLVEKN 238
G ++ L + L N
Sbjct: 195 SGCAEKDTVEKLKMFGLKLNN 215
>gi|52548883|gb|AAU82732.1| conserved hypothetical protein [uncultured archaeon GZfos19C7]
Length = 224
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 19/218 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +K G +V PT+T+YGL DA + A+ +Y+IK+RD+++P++I VS + + A
Sbjct: 12 ATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRDLSRPISIAVSSFEMLHEVA 71
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
D + FE++AELLPGPVTI+ + + + L V VR PD++ +++K P+
Sbjct: 72 DIDSECFEIIAELLPGPVTILLRKKDVVPAILTAASEVVGVRFPDNEIATRIIK-ETGPI 130
Query: 160 ALTSANESNEPSTLCINEFQ---KLWSQ-LSVVIDGG--IISNPERFGSTIVDLS----- 208
TSAN S CI E + KL + L ++I+GG S P ST+VD+S
Sbjct: 131 TATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMP----STVVDMSKVGAT 186
Query: 209 --EENVYSIVRKGVCYDKILKILHKYHLVEK-NTFPIP 243
E+ I RKG CYD++L +L + E + F +P
Sbjct: 187 ANEKGEIKIKRKGACYDRVLHVLRSKAVGEGLHRFSVP 224
>gi|52550560|gb|AAU84409.1| putative translation factor [uncultured archaeon GZfos9E5]
Length = 222
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 17/216 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +K G +V PT+T+YGL DA + A+ +Y+IK+R V +P++I VS + + A
Sbjct: 12 ATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAVTQPISIAVSSFEMLHEVA 71
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
D FE++AELLPGPVTI+F + + + L V VR PD++ + +++K P+
Sbjct: 72 DIDFECFEIIAELLPGPVTILFKKKDIVPAILTAASEVVGVRFPDNEIVTRIIK-ETGPI 130
Query: 160 ALTSANESNEPSTLCINEFQ---KLWSQ-LSVVIDGG--IISNPERFGSTIVDLS----- 208
TSAN S CI E + KL + L ++I+GG S P ST+VD+S
Sbjct: 131 TATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMP----STVVDMSKATAN 186
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEK-NTFPIP 243
E+ I RKG CYD++L +L + E + F +P
Sbjct: 187 EKREIEIKRKGACYDRVLHVLRSKAVGEGLHRFSVP 222
>gi|52548507|gb|AAU82356.1| putative translation factor [uncultured archaeon GZfos17A3]
Length = 241
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 118/217 (54%), Gaps = 18/217 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +K G +V PT+T+YGL DA + A+ +Y+IK+R +P++I VS + + A
Sbjct: 30 ATAIIKHGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAATQPISIAVSSFEMLHEVA 89
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
D + E++AELLPGPVTI+F + + + L + VR PD++ +++K P+
Sbjct: 90 DIDSEYVEIIAELLPGPVTILFKKKDIVPAILTAASEVIGVRFPDNEIATRIIKET-GPI 148
Query: 160 ALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGG--IISNPERFGSTIVDLS------ 208
TSAN S CI E + KL +L ++I+GG S P ST+VD+S
Sbjct: 149 TATSANVSGRNPPTCIEEVEVELKLKVELGIIINGGKCKYSMP----STVVDMSKAGATA 204
Query: 209 -EENVYSIVRKGVCYDKILKILHKYHLVEK-NTFPIP 243
E+ I RKG CYD++L +L + E + F +P
Sbjct: 205 NEKGEIKIKRKGACYDRVLHVLRSKAVGEGLHRFSVP 241
>gi|392892259|ref|NP_496826.2| Protein Y48C3A.18, isoform a [Caenorhabditis elegans]
gi|218654185|emb|CAB55118.2| Protein Y48C3A.18, isoform a [Caenorhabditis elegans]
Length = 216
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 13/207 (6%)
Query: 35 KAALLAAQCL-KKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
+ A+ AA C+ +G +VALPTDTLYG++ T + + LY +K+R KPL I + T
Sbjct: 16 EEAIDAAVCVFLRGGIVALPTDTLYGIS---TLLQYSDRLYALKQRPYEKPLGIFLPSPT 72
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
+ K T+S EL LLPGPVT++F R L E NP V VA R+PD + + K
Sbjct: 73 AM-KLVSRQTISDELANCLLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDCPIVSTICK 131
Query: 154 LMDSPLALTSANESNE---PSTLCINEFQKLWSQLSVVIDGG-IISNPERFGSTIVDLSE 209
+ PLA TSAN S P++ I+ F+ L + +++D G IIS+ E GSTIVDL+
Sbjct: 132 KLGQPLAQTSANVSGSSLNPTS--IDHFRDLHPNIDLILDAGSIISSGE--GSTIVDLTV 187
Query: 210 ENVYSIVRKGVCYDKILKILHKYHLVE 236
E+ + IVR G + ++ L + L +
Sbjct: 188 ESGFRIVRSGCAEKETMQKLKSFGLTK 214
>gi|435845452|ref|YP_007307702.1| translation factor SUA5 [Natronococcus occultus SP4]
gi|433671720|gb|AGB35912.1| translation factor SUA5 [Natronococcus occultus SP4]
Length = 194
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 106/194 (54%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL +A ++ A+ ++E K RD +KP+++ VS + +
Sbjct: 7 AAAAIRGGELVVYPTETVYGLGANALDADAVERVFETKGRDRSKPISMAVSSVPSALDYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++ E +A LPGPVT++ R E + EL +V +RIPDH +L + +P+
Sbjct: 67 RANSREREFMATFLPGPVTVLCRRREDVPDELTAGQDRVGIRIPDHAVALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSANES S ++E + + + VIDGG E ST+VD++ ++ R+
Sbjct: 127 TATSANESGSGSVRRLDELAPTIRDRAAAVIDGGETPGTE---STVVDVASGTIH---RR 180
Query: 219 GVCYDKILKILHKY 232
G D+I + L +
Sbjct: 181 GARADEIERWLESH 194
>gi|375090866|ref|ZP_09737173.1| Sua5/YciO/YrdC/YwlC family protein [Helcococcus kunzii ATCC 51366]
gi|374565002|gb|EHR36280.1| Sua5/YciO/YrdC/YwlC family protein [Helcococcus kunzii ATCC 51366]
Length = 344
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 117/197 (59%), Gaps = 12/197 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A+ +K G +VA+PT+T+YGLA D N +A+ ++ K R ++ PL + +S+I + +
Sbjct: 20 ASSIIKNGGLVAIPTETVYGLAADGLNPEALEKIFIAKNRPMDNPLILHISDIFQVYELT 79
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D E+L +L PGP+T++ NRS+ + E+ + VA+R+PD+K R +K+ D+P
Sbjct: 80 KDVKETDIEILKKLWPGPLTVILNRSDIVPDEVTAGLDTVAIRMPDNKITRSFIKICDTP 139
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA SAN S +PS T ++ + ++ +IDGG P G ST++DL+EE I
Sbjct: 140 LAAPSANLSTKPSPTTADAVYEDMNGRIDAIIDGG----PCTIGIESTVLDLTEE-APKI 194
Query: 216 VRKGVCYDKILKILHKY 232
+R G Y K ++L KY
Sbjct: 195 LRPG-YYTK--EMLEKY 208
>gi|355745164|gb|EHH49789.1| hypothetical protein EGM_00504, partial [Macaca fascicularis]
Length = 150
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 5/133 (3%)
Query: 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTSAN S
Sbjct: 11 LLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLS 70
Query: 168 NEPSTLCINEFQKLWSQLSVV---IDGGIISNPE-RFGSTIVDLSEENVYSIVRKGVCYD 223
++ S+L + EF+ LW QLS+V G +PE R GST+VDLS + I+R G +
Sbjct: 71 SQASSLNVEEFRDLWPQLSLVIDGGQIGGGQSPECRLGSTVVDLSVPGKFGIIRPGCALE 130
Query: 224 KILKIL-HKYHLV 235
IL KY L+
Sbjct: 131 STTAILQQKYGLL 143
>gi|410866507|ref|YP_006981118.1| SUA5 related protein [Propionibacterium acidipropionici ATCC 4875]
gi|410823148|gb|AFV89763.1| SUA5 related protein [Propionibacterium acidipropionici ATCC 4875]
Length = 277
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 19/223 (8%)
Query: 28 IVKVTDPKAAL----LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
++ VTDP+ + AA+ LK+G V LPTDT+YG+ DA + A+ L K R +
Sbjct: 21 VLDVTDPQIRVDSLRRAAEALKEGECVVLPTDTVYGIGADALDPLAVQRLLMAKGRGRDM 80
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
P + + + +P D + LAE PG +T++F E L ++L +AVR+
Sbjct: 81 PPPVLIGDAAVLPALCDRVPAAARDLAEAFWPGGLTLIFRAQEDLTMDLGETNGTIAVRV 140
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG 201
PD R LL++ PLA++SAN+S P+ L I + +L + ++V +DGG P R G
Sbjct: 141 PDQDAARDLLRIT-GPLAVSSANKSGHPAALEIGDALSQLGTSVAVYLDGG----PSRIG 195
Query: 202 --STIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTFPI 242
STI+D + ++ ++R+G + H V + P+
Sbjct: 196 ESSTIIDFASDDAGKVLRQGALS------IEDIHRVAPDVVPL 232
>gi|452206926|ref|YP_007487048.1| threonylcarbamoyl-AMP synthase YrdC [Natronomonas moolapensis
8.8.11]
gi|452083026|emb|CCQ36309.1| threonylcarbamoyl-AMP synthase YrdC [Natronomonas moolapensis
8.8.11]
Length = 197
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +++G +V PT+T+YGL DA + +AI ++E K R +KPL++ + E+ +A
Sbjct: 9 AVAAIRRGDLVVYPTETVYGLGVDALDPEAIERVFEAKGRSRHKPLSMALPELAAAADYA 68
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
LPGPVT++ R+E + L +V +R+PDH R L + P+
Sbjct: 69 RMTERERRFCERFLPGPVTVLVERTERVPDVLVDGGDRVGIRLPDHDTARALARRT-GPI 127
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S EPS ++E + + V+DGG E ST+VD+S IVR+G
Sbjct: 128 TATSANRSGEPSARRVDEIDAAIRERATVLDGGETPGTE---STVVDVS---AGRIVRRG 181
Query: 220 VCYDKI 225
D+I
Sbjct: 182 ELADEI 187
>gi|448622465|ref|ZP_21669159.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax denitrificans ATCC
35960]
gi|445754547|gb|EMA05952.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax denitrificans ATCC
35960]
Length = 200
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 11/196 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD +KPL+ ++ ++
Sbjct: 9 AAAAVRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDKPLSAGFPDVDAALEFV 68
Query: 99 -ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
AD +F + LPGPVT+V R + L L +V VR+PDH+ R L + +
Sbjct: 69 VADDREEAF--MRRFLPGPVTVVVERRDSLPDALVAGKDRVGVRVPDHELARALFRAAGT 126
Query: 158 PLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+ TSAN S S ++ ++ ++VV+DGG E ST+VD V+
Sbjct: 127 PVTATSANRSGTGSITHPSQLSDEIRDAVAVVLDGGTTPGTE---STVVDPGRGVVH--- 180
Query: 217 RKGVCYDKILKILHKY 232
R+G D I L ++
Sbjct: 181 RRGAMADDIEAWLDEH 196
>gi|392967926|ref|ZP_10333342.1| Sua5/YciO/YrdC/YwlC family protein [Fibrisoma limi BUZ 3]
gi|387842288|emb|CCH55396.1| Sua5/YciO/YrdC/YwlC family protein [Fibrisoma limi BUZ 3]
Length = 206
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 8/192 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKK-RDVNKPLAICVSE 91
DP+ L+ G VV PTDT+YG+ CD N++A+ + IK + + +
Sbjct: 14 DPRRIQYVVNALRDGAVVIYPTDTIYGMGCDIHNARAVERVARIKGIKPAKNDFSFICYD 73
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++ I +A +F+L+ +LLPGP T + S + LN N V +R+PDH RQL
Sbjct: 74 LSHIADYARVSNQAFKLMKKLLPGPFTFILEASSRVPKLLNTNKKTVGIRVPDHDIPRQL 133
Query: 152 LKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+ + +P+ TS + +E + F+K Q+ +VIDGG N STI+D +
Sbjct: 134 VHELGNPIITTSIRDEDEVIEYSTDPELIFEKFQHQVDIVIDGGYGGN---VPSTIIDAT 190
Query: 209 EENVYSIVRKGV 220
+++ +SI+R+G+
Sbjct: 191 DDD-FSIIRQGL 201
>gi|397489012|ref|XP_003815531.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pan
paniscus]
gi|10440179|dbj|BAB15668.1| unnamed protein product [Homo sapiens]
Length = 127
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 5/120 (4%)
Query: 121 FNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK 180
RSE LN +LNP V +RIPDH F++ L ++ + PLALTSAN S++ S+L + EFQ
Sbjct: 1 MERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQD 60
Query: 181 LWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCYDKILKIL-HKYHLV 235
LW QLS+VIDGG I + PE R GST+VDLS + I+R G + IL KY L+
Sbjct: 61 LWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGLL 120
>gi|94969639|ref|YP_591687.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
gi|94551689|gb|ABF41613.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
Length = 215
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 10/212 (4%)
Query: 28 IVKV--TDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
I+K+ +P+ L+A A LK G V+ +PTDT YGLA D N +A+ +YEIK R +K
Sbjct: 5 IIKINSAEPEQKLVAYVADQLKAGMVLGMPTDTFYGLAADPFNLRAVERIYEIKSRSRHK 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
PL++ + + + A SF LLA PGP+T++ L L+ N +AVRI
Sbjct: 65 PLSLMIESVDQAEELAQDLPSSFYLLARRFWPGPLTMIIRAHARLPLKATANSGNIAVRI 124
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFG 201
P +LK P+ TSAN S + Q++ +L ++IDGG ++P
Sbjct: 125 PSAPIPLAVLKAAGLPITATSANLSGQAECTTARALKQQMEERLPLIIDGG--NSPRDVH 182
Query: 202 STIVDLSE-ENVYSIVRKG-VCYDKILKILHK 231
STIVDLS + + I+R+G V ++I ++ +
Sbjct: 183 STIVDLSSGDGQWRIIREGAVSQEQISEMFEQ 214
>gi|257052622|ref|YP_003130455.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM
12940]
gi|256691385|gb|ACV11722.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM
12940]
Length = 198
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 8/194 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +K G +V PT+T+YGL DA ++ AI ++E K+RD + PL++ V+ + +
Sbjct: 10 AAEVVKSGGLVVYPTETVYGLGADALDTAAIEAVFETKRRDRDNPLSLGVASVEAALDYV 69
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E LPGPVT+V + + L +V VRIPDH R+LL+ PL
Sbjct: 70 SPSVTEQRFMQEFLPGPVTVVVEGRDPVPDALTGGRDRVGVRIPDHDLARELLE-RSGPL 128
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S +PS + ++ + V++DGG ST+VD+S ++ R+
Sbjct: 129 TATSANVSGQPSVTDPADLDAEIRTAAGVILDGGETPG---TASTVVDVSRGTIH---RR 182
Query: 219 GVCYDKILKILHKY 232
G D + L +
Sbjct: 183 GANADAVEDWLETH 196
>gi|448606535|ref|ZP_21658961.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738743|gb|ELZ90255.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sulfurifontis ATCC
BAA-897]
Length = 200
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 11/196 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD +KPL+ ++ +
Sbjct: 9 AADAVRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDKPLSAGFPDVDAALEHV 68
Query: 99 -ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
AD +F + LPGPVT+V R + L L +V VR+PDH+ R L + +
Sbjct: 69 VADAREEAF--MRRFLPGPVTVVVERRDSLPDALVAGKDRVGVRVPDHELARSLFRAAGT 126
Query: 158 PLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+ TSAN S S ++ ++ ++VV+DGG E ST+VD V+
Sbjct: 127 PVTATSANRSGTGSITHPSQLSDEIREAVAVVLDGGTTPGTE---STVVDPGRGVVH--- 180
Query: 217 RKGVCYDKILKILHKY 232
R+G D I L ++
Sbjct: 181 RRGSMADDIEAWLDEH 196
>gi|404493183|ref|YP_006717289.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Pelobacter
carbinolicus DSM 2380]
gi|77545247|gb|ABA88809.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Pelobacter
carbinolicus DSM 2380]
Length = 204
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 15/193 (7%)
Query: 34 PKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
P+ L++ +C+K+G +VA PTDT+YGL CD N K I +Y+IK+R KP + ++
Sbjct: 10 PQKRLISRVVECIKQGGIVAYPTDTIYGLGCDIFNRKGIKRIYQIKERVHRKPFSFICAD 69
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++D+ +A +F+++ LPGP T V + + L V +RIP + +
Sbjct: 70 LSDVANYAQVSNFAFKIMKRYLPGPYTFVLEATRVVPDLLVTKQKTVGIRIPSNPISLAI 129
Query: 152 LKLMDSPLALTSANESNE-----PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
++ + PL TSAN S E PS + ++L Q+++V+DGGII ST++
Sbjct: 130 VRELGHPLVTTSANLSGEEPCCDPSLI----EEELGKQINMVVDGGIIKGE---ASTVIS 182
Query: 207 LSEENVYSIVRKG 219
L ++N+ ++R+G
Sbjct: 183 LIDDNI-EVLRQG 194
>gi|448401495|ref|ZP_21571644.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena limicola JCM
13563]
gi|445666410|gb|ELZ19072.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena limicola JCM
13563]
Length = 194
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ + G +V PT+T+YGL A A+ ++E+K RD +KPL+ V + ++
Sbjct: 7 AAEAIDAGDLVVYPTETVYGLGAAALEPDAVERVFEVKGRDRSKPLSFAVPSVPSALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R E + EL +V VR+PDH +L + +P+
Sbjct: 67 RATERERRFMATFLPGPVTVLCRRRETIPEELTAGRDRVGVRVPDHPLALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S +PS + + ++ +VV+DGG E ST+VD+S ++ R+
Sbjct: 127 TATSANVSGQPSVRELGDLDPEIREAAAVVLDGGKTDGTE---STVVDVSSATIH---RR 180
Query: 219 GVCYDKILKILHKY 232
G D+I L +
Sbjct: 181 GAQADEIEAWLETH 194
>gi|288931240|ref|YP_003435300.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642]
gi|288893488|gb|ADC65025.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642]
Length = 334
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 106/173 (61%), Gaps = 8/173 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ +KKG +VA PT+T+YGL DA N KA+ ++E+K R + PL + VS + I +
Sbjct: 22 IAAEEIKKGNLVAFPTETVYGLGADALNEKAVRKIFEVKGRPADNPLIVHVSSVDQIYEI 81
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + ++ +L+ PGP+T+V +++ + + VAVR+PDHK +L++L ++P
Sbjct: 82 AQPNEIAKKLIDAFFPGPLTLVM-KNKKVPKITTAGLDTVAVRMPDHKVALKLIELSETP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN+S +PS T + + L + + V+IDGG + G ST+VD +
Sbjct: 141 IAAPSANKSGKPSPTKAEHVLEDLGNLVDVIIDGG----ETKIGLESTVVDTT 189
>gi|313229165|emb|CBY23750.1| unnamed protein product [Oikopleura dioica]
Length = 243
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 39/221 (17%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A + L K V+A PTDTL+G+A ++ +YEIK R KP+A+C S I I ++
Sbjct: 11 AKKQLSKDGVIAFPTDTLFGIAAQISSESGYRRIYEIKGRSEAKPVAVCFSTIPQILQYL 70
Query: 99 ----------------ADTHTVSF-----------------ELLAELLPGPVTIVFNRSE 125
A V F ELL+ LLPGPVT+V R +
Sbjct: 71 PALDRFRELLMHGRSEAKPVAVCFSTIPQILQYLPALDRFRELLSRLLPGPVTLVVPRGK 130
Query: 126 HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQL 185
+ +NPN + +RIPD+ R L + PL LTSAN+S S + N+F L L
Sbjct: 131 FIPEHVNPNCETIGIRIPDNTISRLLSQA--EPLCLTSANKSGAKSAITSNDFADLHPLL 188
Query: 186 SVVIDG--GIISNPERFGSTIVDLS-EENVYSIVRKGVCYD 223
+++ GI ++ R GST+V+L+ + Y I RKG +D
Sbjct: 189 DAIVETELGIPTSMSRAGSTVVELNLQAKTYFIRRKGCAFD 229
>gi|95929617|ref|ZP_01312359.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684]
gi|95134314|gb|EAT15971.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684]
Length = 204
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+CL++ V+A PTDT+YG+ CD N K I +Y++K+RDV KP + S++++I ++A
Sbjct: 20 ECLRRDGVIAYPTDTIYGVGCDIFNKKGIKKIYQLKRRDVKKPFSFICSDLSEISRYAHV 79
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
++F+++ LPGP T V + S + + V +R+PD+ ++++ + PL
Sbjct: 80 SNMAFKIMKRHLPGPYTFVLDASRVVPDLVMTKQRTVGIRMPDNAITLEIVRQLGHPLVT 139
Query: 162 TSANESNEPSTLCINEFQKLWSQ-LSVVIDGG-IISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S + + + W + L +V+DGG + +P ST++ L + + ++R+G
Sbjct: 140 TSANISGDETYQDPSLIHDDWGKHLDMVVDGGRLYGDP----STVISLRNDQI-EVLRQG 194
>gi|448315850|ref|ZP_21505489.1| Sua5/YciO/YrdC/YwlC family protein [Natronococcus jeotgali DSM
18795]
gi|445610609|gb|ELY64379.1| Sua5/YciO/YrdC/YwlC family protein [Natronococcus jeotgali DSM
18795]
Length = 194
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL +A ++ A+ ++E K RD +KP+++ V + ++
Sbjct: 7 AAAAIRSGELVVYPTETVYGLGANAVDADAVERVFEAKGRDRSKPISMAVPSVPAAFEYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E +A LPGPVT++ R E + L +V +R+PDH +L + +P+
Sbjct: 67 RASSREREFMAAFLPGPVTVLCRRREAVPDVLTSGRDRVGIRVPDHPLALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQKLWSQ-LSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSANES S + + + ++ V+DGG E ST+VD+S ++ R+
Sbjct: 127 TATSANESGSGSVRRPDALDPAFRERVAAVVDGGETPGTE---STVVDVSSGTIH---RR 180
Query: 219 GVCYDKILKILHKY 232
GV D+I + L +
Sbjct: 181 GVRADEIERWLESH 194
>gi|20094073|ref|NP_613920.1| translation factor (SUA5) [Methanopyrus kandleri AV19]
gi|19887062|gb|AAM01850.1| Translation factor (SUA5) [Methanopyrus kandleri AV19]
Length = 212
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 10/211 (4%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M ++++ DP A + L+ G +VA+P DT+Y L+CDATNS+A+ LY K+R +KP
Sbjct: 1 MVTVLEEEDPHAVKHVVRALRAGKLVAIPCDTVYSLSCDATNSEAVRRLYAAKERPKDKP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIP 143
+++ V + + L L PGPVTIV R + E+ + VRIP
Sbjct: 61 VSVAVHSPEKALELLEPVPRLEAALETLTPGPVTIVAPRRPGVVAPEVAAGRRTLGVRIP 120
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG- 201
DH F ++++ P+ TSAN S P+ +E F++L +L ++++G RFG
Sbjct: 121 DHPFFLRVVRRFGKPIVTTSANVSGRPAPTDPDEVFEQLGDRLDILVEGEC-----RFGE 175
Query: 202 -STIVDLSEENVYSIVRKGVC-YDKILKILH 230
ST+++L+ E I+R+G ++IL+ L
Sbjct: 176 PSTVIELTPEGNIDILREGAMPKEEILETLR 206
>gi|448320693|ref|ZP_21510179.1| Sua5/YciO/YrdC/YwlC family protein [Natronococcus amylolyticus DSM
10524]
gi|445605595|gb|ELY59517.1| Sua5/YciO/YrdC/YwlC family protein [Natronococcus amylolyticus DSM
10524]
Length = 194
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 7/191 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL +A +S A+ ++E K RD +KP+++ V +
Sbjct: 7 AATAIRAGELVVYPTETVYGLGANAVDSDAVERVFEAKGRDRSKPVSMAVPSAPSALDYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
E +A LPGPVT++ R E + EL +V VR+PDH +L + +P+
Sbjct: 67 RATDREREFMARFLPGPVTVLCRRREVVPDELTAGEDRVGVRVPDHDLALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S I++ + + ++V IDGG + E ST+VD+S ++ R+
Sbjct: 127 TSTSANISGSGSVRRIDDLETSIREAVAVTIDGGETAGTE---STVVDVSSGTIH---RR 180
Query: 219 GVCYDKILKIL 229
G D+I + L
Sbjct: 181 GARADEIERWL 191
>gi|313127651|ref|YP_004037921.1| translation factor sua5 [Halogeometricum borinquense DSM 11551]
gi|448286819|ref|ZP_21478038.1| translation factor sua5 [Halogeometricum borinquense DSM 11551]
gi|312294016|gb|ADQ68476.1| translation factor SUA5 [Halogeometricum borinquense DSM 11551]
gi|445573358|gb|ELY27880.1| translation factor sua5 [Halogeometricum borinquense DSM 11551]
Length = 208
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 7/188 (3%)
Query: 53 PTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL 112
PT+T+YGL D T++ A+ ++E+K R +KPL+I V ++ ++ + + +AE
Sbjct: 24 PTETVYGLGADGTDADAVERVFELKGRSRDKPLSIGVPDVDAAREYTRLTSFDADFMAEF 83
Query: 113 LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPST 172
LPGPVT+V R L L +V VR+PDH+ + D P+ TSAN S PS
Sbjct: 84 LPGPVTVVVERGSQLPDVLTAGGDRVGVRVPDHEVALDFFRRADCPVTATSANRSGAPSV 143
Query: 173 LCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHK 231
++ L + VID G P GST+VD S ++ R+G D I L
Sbjct: 144 THPDQLDATLKDSVGAVIDAG--EAPGGTGSTVVDPSRNVIH---RRGAMADAIETWLTD 198
Query: 232 YHLVEKNT 239
H+ E T
Sbjct: 199 -HVGESPT 205
>gi|395781805|ref|ZP_10462216.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella rattimassiliensis
15908]
gi|395420460|gb|EJF86736.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella rattimassiliensis
15908]
Length = 320
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +AI+ ++ IKKR PL V+ I ++
Sbjct: 14 AITLLEQGGLVALPTETVYGLAGDATNGRAISSIFSIKKRPQFNPLIAHVNGIEMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S +L+ + PGP+T+V E N+ + +AVR PD +F +++ +
Sbjct: 74 EIDFLSRQLMEKFWPGPLTLVLPLKEQHNIHPLTTSGLNTLAVRFPDSRFA-DIVQYLGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T F L +S+++DGG P + G STI+ + EN+Y
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVFASLGKTVSLILDGG----PSKIGLESTIIRICAENIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ +KI +++ K
Sbjct: 189 LRPGGLATEKIEEVVGK 205
>gi|11498387|ref|NP_069615.1| hypothetical protein AF0781 [Archaeoglobus fulgidus DSM 4304]
gi|2649831|gb|AAB90461.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 309
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+ G +VA PT+T+YG+ CDATN +A+ LYEIK R +NKP + V + K A
Sbjct: 15 AVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDYVGKIA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + +L+ PGP+T+V + L+P K+AVR+P H+ QL++++ P+
Sbjct: 75 EVDERAEKLMEAFFPGPLTLVLKSKGVMPSLLSPK-GKIAVRMPAHEVPLQLMEMLRKPI 133
Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSE 209
+ SAN S PS + ++L S++ V+ G E STIVDL+E
Sbjct: 134 VVPSANLSGRPSLMRWEHVVEELGSRIDAVVKGECKVGVE---STIVDLTE 181
>gi|327401143|ref|YP_004341982.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6]
gi|327316651|gb|AEA47267.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6]
Length = 317
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +KKG +VA PT+T+YGL DA N A+ ++E K+R PL + VS + + + A
Sbjct: 19 AAEIIKKGGLVAFPTETVYGLGGDALNENAVRRIFEAKERPPRNPLIVHVSSVEQVYRIA 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + V+ +L+ E PGP+ +V + + + + KVAVR+PDHK L++L ++P+
Sbjct: 79 EVNEVAEKLMGEFFPGPLALVLKKKDVVPDITTAGMKKVAVRMPDHKVALTLIELSETPI 138
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
A SAN S PS T + + L ++ ++D G + + G ST++D++
Sbjct: 139 AAPSANISGRPSPTKAEHVIEDLAGRIDAILDAGEV----KIGIESTVLDVT 186
>gi|448582657|ref|ZP_21646161.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax gibbonsii ATCC 33959]
gi|445732305|gb|ELZ83888.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax gibbonsii ATCC 33959]
Length = 200
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 15/198 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD +KPL+ ++ A
Sbjct: 9 AADAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDKPLSAGFPDV----DAA 64
Query: 100 DTHTVSFE----LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
H V+ E + LPGPVT+V R + L L +V VR+PDH+ L +
Sbjct: 65 LEHVVADEREEAFMRRFLPGPVTVVVERRDSLPDALVAGKERVGVRVPDHELALDLFRAA 124
Query: 156 DSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
+P+ TSAN S S ++ ++ ++VV+DGG E ST+VD V+
Sbjct: 125 GTPVTATSANRSGTGSITHPSQLSDEIREAVAVVLDGGTTPGTE---STVVDPGRGVVH- 180
Query: 215 IVRKGVCYDKILKILHKY 232
R+G D I L ++
Sbjct: 181 --RRGAMADDIEAWLDEH 196
>gi|448550915|ref|ZP_21629144.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. ATCC BAA-645]
gi|448558690|ref|ZP_21633180.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. ATCC BAA-644]
gi|445710860|gb|ELZ62656.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. ATCC BAA-645]
gi|445712073|gb|ELZ63857.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. ATCC BAA-644]
Length = 205
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD N PL+ ++ ++
Sbjct: 14 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRNNPLSAGFPDVDAALEFV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L +V VRIPDH+ L + +P+
Sbjct: 74 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGKDRVGVRIPDHELAVDLFRAAGTPV 133
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++ V+DGG E ST+VD V+ R+
Sbjct: 134 TATSANRSGTGSITHPSQLSDEIRDAVAAVLDGGTTPGTE---STVVDPGRGVVH---RR 187
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 188 GAMADDIEAWLDEH 201
>gi|88859366|ref|ZP_01134006.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2]
gi|88818383|gb|EAR28198.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2]
Length = 324
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +++G +VA+PT+T+YGLA DA N++A+ ++ K R N PL + +++ T + WA
Sbjct: 17 AAQLIEQGELVAVPTETVYGLAADARNAQAVAKIFAAKGRPTNHPLIVHLADHTKMADWA 76
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T + +L A PGP+T++ N++E ++ + +T V +R+P H L LL+ D
Sbjct: 77 KTVPETALKLAAAFWPGPLTLLLNKAEGVSDVVTGGLTTVGLRVPAHPALLSLLQQYDLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S C L +L+ V+DGG + STIVDL+ + V I+R
Sbjct: 137 VAAPSANPYKKLSPTCAEHVLTGLNGKLAAVLDGGACEH--GLESTIVDLTGDTV-QILR 193
Query: 218 KG 219
G
Sbjct: 194 AG 195
>gi|433422919|ref|ZP_20406114.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. BAB2207]
gi|432198501|gb|ELK54778.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. BAB2207]
Length = 204
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD + PL+ ++ ++
Sbjct: 14 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVDAALEFV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L +V VRIPDH+ L + +P+
Sbjct: 74 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGKDRVGVRIPDHELAVDLFRAAGTPV 133
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++VV+DGG E ST+VD V+ R+
Sbjct: 134 TATSANRSGTGSITHPSQLSDEIRDAVAVVLDGGTTPGTE---STVVDPGRGVVH---RR 187
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 188 GAMADDIEAWLDEH 201
>gi|448573384|ref|ZP_21640968.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax lucentense DSM 14919]
gi|445719149|gb|ELZ70832.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax lucentense DSM 14919]
Length = 198
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD + PL+ ++ ++
Sbjct: 8 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVDAALEFV 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L +V VRIPDH+ L + +P+
Sbjct: 68 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGRDRVGVRIPDHELAVDLFRAAGTPV 127
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++VV+DGG E ST+VD V+ R+
Sbjct: 128 TATSANRSGTGSITHPSQLSDEIRDAVAVVLDGGTTPGTE---STVVDPGRGVVH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 182 GAMADDIEAWLDEH 195
>gi|320106655|ref|YP_004182245.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
gi|319925176|gb|ADV82251.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
Length = 214
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 9/183 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+CL+ G V A+PTDT YGLA D N +A+ +YE+K R +KPL++ +++ + A
Sbjct: 23 RCLESGMVAAIPTDTFYGLAVDPVNLRAVEQIYELKGRAKHKPLSLLIADTAHAYELARD 82
Query: 102 HTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+F+ LAE PGP+TI+ L L + + VA+R+P+ R ++K + P+
Sbjct: 83 VDTAFDKLAEKFWPGPLTIIVKAGSRLPLRVTAHTGNVALRVPEAAIPRAIVKKLGLPIT 142
Query: 161 LTSANESNEPS---TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS-EENVYSIV 216
TSAN P C+ + +L Q+ +++DGG + +TIVDLS N + I+
Sbjct: 143 ATSANLRGLPECNYAACVRD--QLGGQIPLIVDGGPTAR--SIATTIVDLSGGGNSWMIL 198
Query: 217 RKG 219
R+G
Sbjct: 199 REG 201
>gi|390961755|ref|YP_006425589.1| putative translation factor, sua5 family [Thermococcus sp. CL1]
gi|390520063|gb|AFL95795.1| putative translation factor, sua5 family [Thermococcus sp. CL1]
Length = 339
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 110/201 (54%), Gaps = 9/201 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +AA+ + +G +VA PT+T+YGL DA N +A+ ++E K R + PL I +++
Sbjct: 12 DERKIRVAARFILEGKLVAFPTETVYGLGADALNGEAVRRIFEAKGRPADNPLIIHIADF 71
Query: 93 TDIPKWADTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+D+ K A +LLA E PGP+T V R E + L + VAVR+P H L
Sbjct: 72 SDLKKLASEVPKEAKLLAEEFWPGPLTFVLPRKEEVPLVTTGGLDTVAVRMPSHPIALSL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ +P+A SAN S +PS TL + + ++ +IDGG R G ST++DLS
Sbjct: 132 IR-ASTPIAAPSANISGKPSPTLAEHVIDDFYGKIKAIIDGG----ETRIGVESTVIDLS 186
Query: 209 EENVYSIVRKGVCYDKILKIL 229
E + G+ ++I +++
Sbjct: 187 SEKPTLLRPGGLPLEEIERVI 207
>gi|448543843|ref|ZP_21625304.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. ATCC BAA-646]
gi|445705985|gb|ELZ57872.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax sp. ATCC BAA-646]
Length = 199
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD N PL+ ++ ++
Sbjct: 8 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRNNPLSAGFPDVDAALEFV 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L +V VRIPDH+ L + +P+
Sbjct: 68 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGKDRVGVRIPDHELAVDLFRAAGTPV 127
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++ V+DGG E ST+VD V+ R+
Sbjct: 128 TATSANRSGTGSITHPSQLSDEIRDAVAAVLDGGTTPGTE---STVVDPGRGVVH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 182 GAMADDIEAWLDEH 195
>gi|448597638|ref|ZP_21654563.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax alexandrinus JCM
10717]
gi|445739099|gb|ELZ90608.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax alexandrinus JCM
10717]
Length = 199
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD + PL+ ++ ++
Sbjct: 8 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVDAALEFV 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L +V VRIPDH+ L + +P+
Sbjct: 68 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGKDRVGVRIPDHELAVDLFRAAGTPV 127
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++VV+DGG E ST+VD V+ R+
Sbjct: 128 TATSANRSGTGSITHPSQLSDEIRDAVAVVLDGGTTPGTE---STVVDPGRGVVH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 182 GAMADDIEAWLDEH 195
>gi|302532178|ref|ZP_07284520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
gi|302441073|gb|EFL12889.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
Length = 324
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 9/204 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G +VALPT+T+YGL DA N+ A+N ++E+K R + PL + + + W
Sbjct: 11 AAGVLRAGGLVALPTETVYGLGADAENADAVNRIFEVKGRPSSHPLIVHIGGAEQLDDWV 70
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + LLAE PGP+T+V R + LE + VAVR+PDH +LL
Sbjct: 71 EEVSPTARLLAERFWPGPLTLVLRRGRRVPLEATGGLETVAVRVPDHPVALELLAAFGGG 130
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S T + +L + +V+DGG P + G STIVD++ +V SI
Sbjct: 131 VTAPSANRFGSVSPTTADHVGAELGEAVDLVLDGG----PCQVGVESTIVDVT-GDVPSI 185
Query: 216 VRKGVCYDKILKILHKYHLVEKNT 239
+R G + L+ + + L +T
Sbjct: 186 LRPGGVTREDLEAVLGFPLAVPST 209
>gi|297585438|ref|YP_003701218.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens
MLS10]
gi|297143895|gb|ADI00653.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens
MLS10]
Length = 352
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
+A AA+ ++ G VVA PT+T+YGL DAT+ +AI ++E K R + PL + V+ I D
Sbjct: 25 RAIAEAAELIRNGEVVAFPTETVYGLGGDATSDEAIRRIFEAKGRPADNPLIVHVASIED 84
Query: 95 IPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
+W T + +L+A PGP+TIV + L+ + + V +R+PDH +L++
Sbjct: 85 AARWTLTLPKTAKDLMAAFWPGPLTIVLPHNGTLSGAVTAGLPTVGLRMPDHPVALRLIE 144
Query: 154 LMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
PLA S N S PS T + + L ++ +++DGG P G ST+V++++
Sbjct: 145 ASGRPLAAPSGNRSGRPSPTEAAHVEEDLNGRIPMILDGG----PAGVGLESTVVEVTDG 200
Query: 211 NVYSIVRKGVCYDKILKI 228
V + GV + + ++
Sbjct: 201 QVTVLRPGGVTLEALREV 218
>gi|222100697|ref|YP_002535265.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359]
gi|221573087|gb|ACM23899.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359]
Length = 335
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 8/193 (4%)
Query: 25 MCSIVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +VKV D ++ AA LKKG VV PT+T+YG+ DA N +A ++EIK R
Sbjct: 1 MTRVVKVDPLFPDERSLREAADLLKKGEVVVFPTETVYGIGADAYNEEACRKIFEIKGRP 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVF-NRSEHLNLELNPNVTKVA 139
+ PL + + + + + AD + + L PGP+T++ +S+ ++ + + VA
Sbjct: 61 ADNPLIVHICSFSQLEEVADGYESFRDFLERFWPGPLTVILPKKSQRISDVVTAGLPTVA 120
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPE 198
VR+P H +L++++ P+A SAN S PS + + ++S+++D G + P
Sbjct: 121 VRMPAHPVALKLIEMLGDPIAAPSANLSGRPSATSVEHVVEDFMGRVSLILDAG--NTPF 178
Query: 199 RFGSTIVDLSEEN 211
STI+DLS E
Sbjct: 179 GLESTIIDLSREK 191
>gi|401565268|ref|ZP_10806114.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Selenomonas sp. FOBRC6]
gi|400188010|gb|EJO22193.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Selenomonas sp. FOBRC6]
Length = 350
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 12/193 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT---DIP 96
AA L+ G +VA PT+T+YGL + ++ A +YE K R + PL + ++++ D+
Sbjct: 17 AAALLRSGALVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLILHIADLAMAHDV- 75
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
AD ++ LL PGP+T++ ++ H+ + + V VR PDH R+L++
Sbjct: 76 -AADVPPLAAHLLTAFAPGPLTVILPKAPHIPDIVTGGLPTVGVRCPDHDTARRLIRATG 134
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
P+A SAN S PS T + + ++ +++DGG R G STIVD +EE+V
Sbjct: 135 VPIAAPSANTSGRPSPTTAAMVYADMAGRIPLILDGGSC----RLGVESTIVDCTEESVV 190
Query: 214 SIVRKGVCYDKIL 226
+I+R G +++
Sbjct: 191 TILRPGAITREMM 203
>gi|390957499|ref|YP_006421256.1| translation factor SUA5 [Terriglobus roseus DSM 18391]
gi|390412417|gb|AFL87921.1| translation factor SUA5 [Terriglobus roseus DSM 18391]
Length = 213
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+A L+ A L+ G VVA+PTDT YGLA D N +A+ +YE+K R +KPL++ ++
Sbjct: 12 EPEADLVRYVASSLESGMVVAMPTDTFYGLAVDPVNLRAVEQIYELKTRAKHKPLSLLIA 71
Query: 91 EITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
++ + A +F+ LAE PGP+TI+ L L + + VA+R+P+ R
Sbjct: 72 NLSHGYELARDIDTAFDRLAEKFWPGPLTIIVKAGSRLPLRVTAHTGNVALRVPEAPIAR 131
Query: 150 QLLKLMDSPLALTSANESNEPS---TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
+++ + P+ TSAN + +P C+ E +L ++ +++DGG + +TIVD
Sbjct: 132 AVVEKLGLPITATSANLAGQPECTHARCVRE--QLGDRIPLIVDGGPTAR--TVPTTIVD 187
Query: 207 LS-EENVYSIVRKG 219
LS N + I+R+G
Sbjct: 188 LSGGGNSWMILREG 201
>gi|340344650|ref|ZP_08667782.1| Sua5 superfamily-related protein [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519791|gb|EGP93514.1| Sua5 superfamily-related protein [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 357
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 114/196 (58%), Gaps = 8/196 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A++ +K G +VA PT+T+YGL +A +S ++ ++ K R + PL I +S+I+D+ +
Sbjct: 33 ASKIIKSGNIVAFPTETVYGLGANALDSDSVKKIFVAKGRPSDNPLIIHISDISDLKRLT 92
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
AD T + +L+ + PGP+T+V +S+ + + VAVR+P++K + L+ +P
Sbjct: 93 ADIPTTAHKLIRKFWPGPLTLVLKKSKIVPKITTGGINTVAVRMPENKIAKLLIHETGTP 152
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA SAN S PS T + F+ + ++S++IDGG + G ST++DLS + +
Sbjct: 153 LAAPSANISGRPSPTTSGHVFEDMNGKISMIIDGG----KTKIGIESTVIDLSRKTPMLL 208
Query: 216 VRKGVCYDKILKILHK 231
V +++ K++ K
Sbjct: 209 RPGAVTLEQLQKVIGK 224
>gi|334128799|ref|ZP_08502678.1| Sua5/YciO/YrdC/YwlC family protein [Centipeda periodontii DSM 2778]
gi|333386211|gb|EGK57429.1| Sua5/YciO/YrdC/YwlC family protein [Centipeda periodontii DSM 2778]
Length = 350
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 8/205 (3%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
I++ T P AA ++ G +VA PT+T+YGL + ++ A +YE K R + PL +
Sbjct: 5 ILRPTAPADFERAAGLIRSGALVAFPTETVYGLGANGLDAAACTRIYEAKGRPSDNPLIL 64
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
++++T + A D ++ LL PGP+T++ ++ H+ + + V VR PD+
Sbjct: 65 HIADLTMAYEIASDVPPIAAHLLTAFAPGPLTVILPKAAHIPDIVTGGLATVGVRCPDNI 124
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
R L++ P+A SAN S PS T ++ + ++ +++DGG R G ST
Sbjct: 125 IARHLIRAAGVPIAAPSANTSGRPSPTTAAMVYEDMAGRIPLILDGGSC----RLGVEST 180
Query: 204 IVDLSEENVYSIVRKGVCYDKILKI 228
IVD +EE +I+R G +++ +
Sbjct: 181 IVDCTEEGALTILRPGAVTREMIAM 205
>gi|118580209|ref|YP_901459.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter propionicus DSM
2379]
gi|118502919|gb|ABK99401.1| translation factor SUA5 [Pelobacter propionicus DSM 2379]
Length = 202
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Query: 34 PKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
P+ L+A CL+ G ++A PTDT YG+ C N K I +Y +K+R+ KP +
Sbjct: 10 PQQRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPN 69
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++++ ++A +F++L LPGP T V + + L V +RIPD++ ++
Sbjct: 70 LSEVARFARVSNTAFKILKRYLPGPYTFVLEATRDVPDLLLTRQKTVGIRIPDNRICLEI 129
Query: 152 LKLMDSPLALTSANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVDLSEE 210
++++ SP+ TSAN S + T +++ QL +V+DGGI++ S++V+L +
Sbjct: 130 VQMLGSPIVTTSANLSGDEPTGNPGFIDEIFGHQLDIVVDGGILTKEV---SSVVNLVND 186
Query: 211 NVYSIVRKGV 220
I+R G+
Sbjct: 187 TP-EIIRAGM 195
>gi|337285303|ref|YP_004624777.1| sua5 superfamily-like protein [Pyrococcus yayanosii CH1]
gi|334901237|gb|AEH25505.1| sua5 superfamily-related protein [Pyrococcus yayanosii CH1]
Length = 340
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 8/181 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + ++AA+ +++G +VA PT+T+YGL DA N +A+ ++E K R + PL + +++
Sbjct: 12 DKRKLMVAARLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKNRPADNPLIVHIADF 71
Query: 93 TDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + A +LLAE PGP+T+V ++E++ + VAVR+P H+ L
Sbjct: 72 EQLKELAQEIPKEAKLLAERFWPGPLTLVLLKAENVPRVTTGGLDAVAVRMPAHEIALAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++L P+A SAN S PS T + + L+ ++ ++DGG R G ST++DL+
Sbjct: 132 IRLSGKPIAAPSANISGRPSPTTAEHVAEDLYGKIECIVDGG----ETRIGVESTVIDLT 187
Query: 209 E 209
E
Sbjct: 188 E 188
>gi|269957074|ref|YP_003326863.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
15894]
gi|269305755|gb|ACZ31305.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
15894]
Length = 346
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 8/209 (3%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M ++ P AA L+ G +VALPT+T+YGLA DA + + +Y K R + P
Sbjct: 1 MTVLLHADQPDDVAAAAGILRAGGIVALPTETVYGLAGDALDPAVVGAIYAAKGRPSDNP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIP 143
L + V+ D+P S LAE PGP+T+V R + + + + VAVR+P
Sbjct: 61 LIVHVAAFDDLPAVVRDVPGSARALAEAFWPGPLTMVLPRRDVVPDRVTAGLDTVAVRVP 120
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG- 201
H+ R +L+L PLA SAN++ PS T + L ++ V+DGG P G
Sbjct: 121 AHEAFRAVLRLAGVPLAAPSANQAGSPSPTTAEHVLHDLDGRIPAVLDGG----PCTVGV 176
Query: 202 -STIVDLSEENVYSIVRKGVCYDKILKIL 229
ST+VDL+ + GV +++ +L
Sbjct: 177 ESTVVDLTSTPPRLLRPGGVSLEELRAVL 205
>gi|448560642|ref|ZP_21634090.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax prahovense DSM 18310]
gi|445722292|gb|ELZ73955.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax prahovense DSM 18310]
Length = 200
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 11/196 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD +KPL+ ++ +
Sbjct: 9 AAASIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDKPLSAGFPDVDAALEHV 68
Query: 99 -ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
AD +F + LPGPVT+V R + L L +V VR+PDH+ L + +
Sbjct: 69 VADDREEAF--MRRFLPGPVTVVVERRDSLPDALVAGKERVGVRVPDHELALALFRASGT 126
Query: 158 PLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+ TSAN S S ++ ++ ++VV+DGG E ST+VD V+
Sbjct: 127 PVTATSANRSGTGSITHPSQLSDEIREAVAVVLDGGTTPGTE---STVVDPGRGVVH--- 180
Query: 217 RKGVCYDKILKILHKY 232
R+G D I L ++
Sbjct: 181 RRGAMADDIEAWLDEH 196
>gi|284036531|ref|YP_003386461.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
gi|283815824|gb|ADB37662.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
Length = 206
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 8/192 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKK-RDVNKPLAICVSE 91
DP+ + L+ G V+ PTDT+YG+ CD N++A+ + IK + + +
Sbjct: 14 DPRRIEHIVKALRDGAVIIYPTDTIYGMGCDIHNTRAVERVARIKGIKPAKNDFSFICYD 73
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++ I +A +F+L+ ++LPGP T + + + LN N V +R+PD+ RQ+
Sbjct: 74 LSHIADYARVGNQAFKLMKKVLPGPFTFILEATGSVPKILNSNKKTVGIRVPDNDIPRQI 133
Query: 152 LKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+ + +P+ TS + +E + F+K +Q+ +VIDGG N STIVD +
Sbjct: 134 VHELGNPIITTSIRDEDEIIEYSTDPELIFEKFQNQVDMVIDGGYGGN---VASTIVDAT 190
Query: 209 EENVYSIVRKGV 220
++N +SI+R+G+
Sbjct: 191 DDN-FSIIRQGL 201
>gi|268326242|emb|CBH39830.1| conserved hypothetical protein, containing yrdC domain [uncultured
archaeon]
Length = 234
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 13/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +K+G + PT+T+YGL DA + A+ +Y+IK+RDV++P+++ VS + K A
Sbjct: 30 AIAIIKRGGTIVYPTETVYGLGADALSETAVRKVYKIKRRDVSQPISVAVSSFEMLHKVA 89
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T E+L LLPGPVT++ + E + L + VR PD++ ++++ P+
Sbjct: 90 YTDPGISEILFALLPGPVTVLLKKKEIVPALLTAESDVLGVRFPDNEIATRIIE-ETGPI 148
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEEN----VY 213
TSAN S C+ E + + + ++I G S P ST+VD++ N
Sbjct: 149 TATSANVSGRTPPTCVEEVE-IKFLVDIIIHGSKCKYSMP----STVVDMTTANEGKAKI 203
Query: 214 SIVRKGVCYDKILKILHKYHLVEK-NTFPIP 243
I R+G CYD++L +L E +FP+P
Sbjct: 204 KIKRRGACYDRVLHVLRSKITGEGIYSFPLP 234
>gi|88608553|ref|YP_506460.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str.
Miyayama]
gi|88600722|gb|ABD46190.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str.
Miyayama]
Length = 195
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VV PT+T+Y LACDA+N +A+ +Y+IK+R+ K L I V+ I+D+ +A +
Sbjct: 9 LRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNE 68
Query: 104 VSFELLAELLPGPVTIVFNR--SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
L+ E PGPVT + R S HL P KVAVR+PD K ++L+ P+
Sbjct: 69 SQARLIQECCPGPVTFILKRKKSAHLRFRF-PE--KVAVRVPDSKVALKILRGFKRPVFA 125
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
TS N S P+ ++ F ++ S + + I N E G S+I+D+S + +VRKG
Sbjct: 126 TSVNLSGRPA---VSNFTQIGSYIKKRVSRIICDNREVKGTASSIIDISGKRAV-LVRKG 181
>gi|241895236|ref|ZP_04782532.1| SUA5 family translation factor [Weissella paramesenteroides ATCC
33313]
gi|241871542|gb|EER75293.1| SUA5 family translation factor [Weissella paramesenteroides ATCC
33313]
Length = 342
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +K+G +VA PT+T+YGL DA N KA+ +Y K R + PL + V++ + +A
Sbjct: 15 AARAIKRGSLVAFPTETVYGLGADAYNEKAVGKVYAAKGRPSDNPLIVHVADPEQVADFA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + +L+A PGP+T++ + + L++ + + VAVR+PD+ RQL++ P
Sbjct: 75 IVNERAQKLMAAYWPGPLTMILPVKPDVLSMTVTGGLDTVAVRLPDNAATRQLIRESGKP 134
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS TL + + L +++ ++D G P + G ST++DLS + + ++
Sbjct: 135 LVGPSANTSGKPSPTLAKHVYHDLHGKIAGILDDG----PTKIGVESTVLDLSTD-MPAV 189
Query: 216 VRKG 219
+R G
Sbjct: 190 LRPG 193
>gi|408357418|ref|YP_006845949.1| hypothetical protein AXY_20550 [Amphibacillus xylanus NBRC 15112]
gi|407728189|dbj|BAM48187.1| hypothetical protein AXY_20550 [Amphibacillus xylanus NBRC 15112]
Length = 341
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D +A ++ ++ G VVA PT+T+YGL DATN +A+ ++ K R + PL + V+ I
Sbjct: 11 DEQATDQLSKYIRSGEVVAFPTETVYGLGADATNPEAVKKIFLAKGRPSDNPLIVHVASI 70
Query: 93 TDIPKW-ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
I + + + L+ +PGP+T+V + ++ ++ + V VRIPDH ++L
Sbjct: 71 EQIESYVTEISPAARRLIQAFMPGPLTVVLPSNGKISDQVTAGLDTVGVRIPDHPAAQEL 130
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
++ + P+A SAN S +PS T I+ FQ L ++ ++DGG ST+VD + E
Sbjct: 131 IQKANVPIAAPSANLSGKPSPTSAIHVFQDLNGKIKAILDGGTTGV--GLESTVVDCTGE 188
Query: 211 NVYSIVRKGVCYDKILKIL 229
I GV +I ++L
Sbjct: 189 KPEIIRPGGVTQMEIEEVL 207
>gi|296268875|ref|YP_003651507.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM
43833]
gi|296091662|gb|ADG87614.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM
43833]
Length = 215
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 11/195 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP---LAICVSEITDIP 96
AA +++G +V +PTDT+YG+ CDA N++A+ L E K R + P L VS T +
Sbjct: 20 AASAVRRGELVVIPTDTVYGIGCDAFNTRAVAALLEAKGRGRDMPAPVLVGTVSAATALV 79
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ TH +L+ PGP+T++F + L +L VAVR+P H+ LL+
Sbjct: 80 QSLGTH--GQDLIDAFWPGPLTLIFRANPSLAWDLGDTKGTVAVRMPMHQVALDLLRET- 136
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A++SAN S +P + E Q +L +SV +DGG + + STIVDL+ V +
Sbjct: 137 GPMAVSSANRSGQPPATTVEEAQEQLGDAVSVYLDGGPCT--DNVPSTIVDLTTA-VPRL 193
Query: 216 VRKG-VCYDKILKIL 229
+RKG + DKI ++
Sbjct: 194 LRKGAIPVDKIRGVV 208
>gi|448376040|ref|ZP_21559324.1| Sua5/YciO/YrdC/YwlC family protein [Halovivax asiaticus JCM 14624]
gi|445658058|gb|ELZ10881.1| Sua5/YciO/YrdC/YwlC family protein [Halovivax asiaticus JCM 14624]
Length = 194
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G +V PT+T+YGL DA + AI ++E K RD +KPL++ V + +
Sbjct: 7 AADAIDAGELVVYPTETVYGLGADALDPSAIEHVFEAKGRDRDKPLSMAVPSVPSALEHV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R + L +V +R+PDH +L + +P+
Sbjct: 67 RATDRERRFMATFLPGPVTVLCTRRSSVPDVLTAGRDRVGIRVPDHPLALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S PS +E + Q +VV+DGG E ST+VD++ + ++ R+
Sbjct: 127 TATSANVSGRPSVRRPDELDDSIREQAAVVVDGGETDGTE---STVVDVATDTIH---RR 180
Query: 219 GVCYDKI 225
G D I
Sbjct: 181 GARADDI 187
>gi|225872631|ref|YP_002754088.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
51196]
gi|225793984|gb|ACO34074.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
51196]
Length = 210
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 15/186 (8%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS---EITDIPKWA 99
C++ G VV +PTDT YGLA D N +A+ +YE+K R +KPL++ ++ + ++ +
Sbjct: 20 CIRSGKVVGMPTDTFYGLAVDPVNLRAVESIYELKSRQKHKPLSLLIANPGQAYELAREV 79
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D H F+ LAE PGP+T++ L L N VA+R+PD + R +++ + P
Sbjct: 80 DNH---FDRLAERFWPGPLTVIVKAGSRLPLRSTANTGNVALRVPDAEIPRAVVEALGLP 136
Query: 159 LALTSANESNEPS---TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE-ENVYS 214
+ TSAN N C+ + +L ++ +++DGG P +TIVDLS +
Sbjct: 137 ITATSANLQNAAECTYASCVRD--QLGERIPLIVDGG--PTPRSLPTTIVDLSAGGGQWQ 192
Query: 215 IVRKGV 220
I+R+G
Sbjct: 193 ILREGA 198
>gi|448406948|ref|ZP_21573380.1| DNA binding protein, translation factor [Halosimplex carlsbadense
2-9-1]
gi|445676754|gb|ELZ29271.1| DNA binding protein, translation factor [Halosimplex carlsbadense
2-9-1]
Length = 198
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ + G + PT+T+YG+ +A +++A+ ++E+K RD +KP+++ V + ++
Sbjct: 7 AARAIADGDLAVYPTETVYGMGANAVDAEAVERVFEVKGRDRDKPVSLGVPSVERATEYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
D + LPGPVT+V R + + L +V VR+PDH L + P+
Sbjct: 67 DPTERELRFMRAFLPGPVTVVVQRRDVVPDVLTAGRERVGVRVPDHDLALDLFEAAGVPV 126
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++E ++ ++S ++DGG E ST+VD +V+ R+
Sbjct: 127 TATSANLSGTGSVRELDELSDEVRDRVSAMVDGGRTDGME---STVVDAESGDVH---RR 180
Query: 219 GVCYDKILKILHKYHLVE 236
G D+I L + E
Sbjct: 181 GAMADEIEAWLADHADTE 198
>gi|338732888|ref|YP_004671361.1| putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Simkania negevensis Z]
gi|336482271|emb|CCB88870.1| putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Simkania negevensis Z]
Length = 325
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 9/195 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L++G +VA+PT+T YGLA N A+ LYEIK R+ + L I V+ +
Sbjct: 24 AARLLQQGALVAIPTETTYGLAASILNETALKNLYEIKNRETSTALPIQVANTDQLKFIT 83
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
F+L+A+ LPGP+TIV ++ HL+ ++ + VAVRI +K R+L++L+ P
Sbjct: 84 RDLPHQFDLIAKHFLPGPLTIVLKKNPHLSSTISGGMDTVAVRISSNKIARRLIELVGCP 143
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA+ SAN S PS C + ++ ++DGG N E +G ST++ L + I
Sbjct: 144 LAMPSANLSGNPSPTCAKHVLEDFNGKIQGIVDGG---NSE-YGLESTVLSLEDPANPVI 199
Query: 216 VRKGVCYDK-ILKIL 229
+R GV + I K+L
Sbjct: 200 LRFGVISQRSIEKVL 214
>gi|157364237|ref|YP_001471004.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO]
gi|157314841|gb|ABV33940.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO]
Length = 338
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +++KV +P +L AAQ +K+G VVA PT+T+YGL D N A+ +++IK R
Sbjct: 1 MTTLIKVDPLNPNEGILRKAAQTIKEGGVVAFPTETVYGLGADCFNISAVLKIFQIKNRP 60
Query: 81 VNKPLAICVSEITDIPKW--ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
+ PL I + + + + D S+ ++ PGPVT +F + ++ E+ + V
Sbjct: 61 ADNPLIIHIYDKKQLEELVEGDIEQNSY-VMDVFWPGPVTFIFRKKANVPKEVTGGLETV 119
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNP 197
A+R+P H + L+L +P+A SAN S +PS T + L+ + V+IDGG P
Sbjct: 120 AIRMPSHPVAQVFLRLSGTPVAAPSANLSGKPSPTRAEHVIADLYGSVDVIIDGG--ETP 177
Query: 198 ERFGSTIVDLSEE 210
STIVDLS +
Sbjct: 178 LGLESTIVDLSRD 190
>gi|433589390|ref|YP_007278886.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema pellirubrum DSM
15624]
gi|448335522|ref|ZP_21524666.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema pellirubrum DSM
15624]
gi|433304170|gb|AGB29982.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema pellirubrum DSM
15624]
gi|445616912|gb|ELY70524.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema pellirubrum DSM
15624]
Length = 195
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 6/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G +V PT+T+YGLA DA + A+ ++E+K RD +KP+++ V + +
Sbjct: 7 AAEAIEEGKLVVYPTETVYGLAADALSPAAVERVFEVKGRDRSKPVSMAVPSVPSALQHV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT++ R E + EL +V VR+PDH +L + +P+
Sbjct: 67 RATERERQFMGTFLPGPVTVLCRRRETVPDELTAGRDRVGVRVPDHAVALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S +++ ++ +VV+D G ST+VD+S ++ R+
Sbjct: 127 TSTSANVSGRESACQVDDLDPEIREDAAVVLDSGETDGGTE--STVVDVSSGTIH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D+I L ++
Sbjct: 182 GAMADEIEAWLEQH 195
>gi|448293982|ref|ZP_21484082.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
gi|445568782|gb|ELY23360.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
Length = 205
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD + PL+ ++ +
Sbjct: 14 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVDAALELV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L ++ VRIPDH+ L + +P+
Sbjct: 74 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGKDRIGVRIPDHELALALFRASGTPV 133
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++VV+DGG E ST+VD V+ R+
Sbjct: 134 TATSANRSGTGSITHPSQLSDEIREAVAVVLDGGTTPGTE---STVVDPGRGVVH---RR 187
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 188 GAMADDIEAWLDEH 201
>gi|338731319|ref|YP_004660711.1| translation factor SUA5 [Thermotoga thermarum DSM 5069]
gi|335365670|gb|AEH51615.1| translation factor SUA5 [Thermotoga thermarum DSM 5069]
Length = 338
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 110/193 (56%), Gaps = 8/193 (4%)
Query: 25 MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M I+KV +P ++L AA+ +K+G VVA PT+T+YGL D N + ++++K R
Sbjct: 1 MTMILKVDAVEPNVSILQRAAKVIKEGGVVAFPTETVYGLGADCFNVVGVLKIFKVKNRP 60
Query: 81 VNKPLAICVSEITDIPKWADTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVA 139
+ PL + + E+ + + + T ++ +++ + PGPVT++F +S + E+ + +A
Sbjct: 61 PDNPLIVHICELQQLYELVEQDTKIAEKVIEKFWPGPVTLIFKKSAKVPKEVTGGLETIA 120
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPE 198
VR+P H R L+KL +P+A SAN S PS T + + L+ + V+ID G P
Sbjct: 121 VRMPSHPVARLLIKLSGTPIAAPSANLSGRPSPTKAEHVVEDLYGLIDVIIDAG--ETPL 178
Query: 199 RFGSTIVDLSEEN 211
S+I+D S++
Sbjct: 179 GLESSIIDFSKDR 191
>gi|240850071|ref|YP_002971464.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii
as4aup]
gi|240267194|gb|ACS50782.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii
as4aup]
Length = 320
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +AI+ ++ K R PL VS I ++
Sbjct: 14 AIALLEQGKLVALPTETVYGLAGDATNGRAISSIFSTKGRPQINPLIAHVSGIEMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+S +L+ E PGP+T+V E N+ + +AVR PD F ++++
Sbjct: 74 KIDFLSRQLMEEFWPGPLTLVLPLKEQHNIHPLTTSGLNTLAVRFPDSLFA-EVVQHFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T F L + +++DGG P + G STI+ + +EN+Y
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVFASLGESVPLILDGG----PAKIGLESTIIKICDENIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ DKI +++ K
Sbjct: 189 LRPGGLAADKIEEVVGK 205
>gi|406838189|ref|ZP_11097783.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vini DSM 20605]
Length = 343
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
I K+ P AA LKKG ++A PT+T+YGL DATN +A+ +Y K R + PL +
Sbjct: 3 ITKIYQPDQVDQAADELKKGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPLIV 62
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDH 145
VS + + K+A + + +L+ PGP+T++F + E L + + A R+P +
Sbjct: 63 TVSSVKMVEKYAIEISPAAHKLIKHFWPGPLTLIFKIKPESLPKAVTGGLKTAAFRMPAN 122
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTI 204
R+L++L P+ SAN S +PS T + F L +++ ++D G S STI
Sbjct: 123 TVTRKLIELAGVPIVGPSANSSGKPSPTTAAHVFHDLEGRIAGIVDDG--STKVGVESTI 180
Query: 205 VDLSEENVYSIVRKGVCYDKILK------ILHKYHLVEKNTFP 241
+DLS + V +++R G + L+ ++ +H V P
Sbjct: 181 IDLSTK-VPTVLRPGAVTAEELENFLQEPVISDHHQVGAQEVP 222
>gi|85858566|ref|YP_460768.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB]
gi|85721657|gb|ABC76600.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB]
Length = 217
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 18/187 (9%)
Query: 32 TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
T P+ ALL A+ L+KG VVA PT+T YGL DA N +AI ++ IK R N P+ + +
Sbjct: 12 THPEPALLQHVAENLRKGRVVAYPTETFYGLGADAGNERAIEKIFSIKGRQFNNPIPLII 71
Query: 90 SE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
+ +T IP+ A L+ PGP+T+VF S++++ L N + +RI
Sbjct: 72 GDRDELDSLVTAIPEAAQ------RLIHVFWPGPLTLVFRASKNVSPRLTANTGLIGIRI 125
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG 201
H R L + + +PL TSAN S + + +E + L S + ++DGG + G
Sbjct: 126 SSHPIARSLARSLGAPLTATSANFSGQKESTTAHEVARTLGSLIDGIVDGGQTRGNK--G 183
Query: 202 STIVDLS 208
ST+V+++
Sbjct: 184 STVVNIA 190
>gi|410720738|ref|ZP_11360091.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. Maddingley
MBC34]
gi|410600449|gb|EKQ54977.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. Maddingley
MBC34]
Length = 213
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G V PTDT+YGL + KA+ +Y++K+R ++KP+++C+S+I DI K A
Sbjct: 23 LRDGGTVVYPTDTVYGLGANIFQEKAVLDVYKMKERSLDKPVSVCLSQIDDIEKIAHVEQ 82
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
++ ++LPGP TI+ N + ++ ++ K+ VRIPD+ R++ + + P+ TS
Sbjct: 83 SVKTVIRKVLPGPYTIILNSKDTVSPQITGGTDKIGVRIPDNFICREISR--EFPITTTS 140
Query: 164 ANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKGV 220
AN S S E +K L ++ID G P R G ST+VDL+ I+R+G
Sbjct: 141 ANISGHQSPKNAQEARKELDDHPDIIIDSG----PCRGGISSTVVDLT-VTPPRILREGE 195
Query: 221 CYDKILKILHK---YH 233
K+L+++ K YH
Sbjct: 196 GMGKLLQVMEKEMGYH 211
>gi|339501276|ref|YP_004699311.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta caldaria DSM 7334]
gi|338835625|gb|AEJ20803.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta caldaria DSM 7334]
Length = 347
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 115/216 (53%), Gaps = 10/216 (4%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
T P+ AA+ LK+G +VA PT+T+YGL DATN+ A+ ++E K+R PL + ++
Sbjct: 7 TAPEDIERAARALKEGKLVAFPTETVYGLGADATNTTALARVFEAKRRPTFDPLIVHIAR 66
Query: 92 ITDIPKWADTHTVSFE-------LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPD 144
++P AD +S E L+ + PGP+T++ + H+ + VAVR+P
Sbjct: 67 SEELPSVADLSQLSAERRTLVTRLIEQFWPGPLTLILPKQPHVPDLATSALPTVAVRLPA 126
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGST 203
H + L++ P+A SAN S T + ++L +++ +IDGG + ST
Sbjct: 127 HPVAQDLIRRTGLPVAAPSANPFGYLSPTRAEHVKEQLGNKVDFIIDGG--RSDVGVEST 184
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
++DLS E V + G+ ++I ++ H +++ T
Sbjct: 185 VLDLSSEEVTILRPGGLARERIESLIGPVHQIDRTT 220
>gi|227538437|ref|ZP_03968486.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300]
gi|227241719|gb|EEI91734.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300]
Length = 206
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 9/190 (4%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAICVSEIT 93
KA LK+G V+ PTDT+YG+ CD TN KAI + EI+ V+K L+ ++T
Sbjct: 13 KAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGLKVDKANLSFICYDLT 72
Query: 94 DIPKWADTHTVS-FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
DI ++ S F +L + LPGP T +FN S + L+ V +R+PD+ +R+++
Sbjct: 73 DISQYTKPFDTSVFRVLKKALPGPFTFIFNASGQVPKLLSSKKKTVGIRVPDNHIVREIV 132
Query: 153 KLMDSPLALTSANESN---EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE 209
+++ +P+ TS + + E ST +K + + +VIDGG N ST+VDL+
Sbjct: 133 RVLGNPIVTTSIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGDN---VASTVVDLTN 189
Query: 210 ENVYSIVRKG 219
+ + IVR+G
Sbjct: 190 GD-FEIVREG 198
>gi|292654433|ref|YP_003534330.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
gi|291371068|gb|ADE03295.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
Length = 199
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN+ A+ +++IK RD + PL+ ++ +
Sbjct: 8 AAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVDAALELV 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L ++ VRIPDH+ L + +P+
Sbjct: 68 EVDDREEAFMRRFLPGPVTVVVERRDSLPDALVAGKDRIGVRIPDHELALALFRASGTPV 127
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++VV+DGG E ST+VD V+ R+
Sbjct: 128 TATSANRSGTGSITHPSQLSDEIREAVAVVLDGGTTPGTE---STVVDPGRGVVH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D I L ++
Sbjct: 182 GAMADDIEAWLDEH 195
>gi|408382487|ref|ZP_11180031.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium formicicum DSM
3637]
gi|407814842|gb|EKF85465.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium formicicum DSM
3637]
Length = 205
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 6/193 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+ L G V PTDT+YGL + + A+ +Y +K+R +NKP+++CVS++ DI +
Sbjct: 18 MVRDTLSGGGTVVYPTDTVYGLGANLFHEDALQNVYLMKRRPLNKPISLCVSKVEDIQQV 77
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + ++ ++LPGP T++ N+ E + L + K+ VRIPD+ R++ + + P
Sbjct: 78 AHLNPQLDGIIKKILPGPYTLILNKKEIVPLLITGGTDKIGVRIPDNSICREISR--EFP 135
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S PS + E +K L ++ID G S ST+VDL+ + I+R
Sbjct: 136 ITTTSANISGHPSPVSAQEARKDLDDHPDILIDSGPCSG--GISSTVVDLT-VSPPRILR 192
Query: 218 KGVCYDKILKILH 230
+G +K+L+ +
Sbjct: 193 EGAGMEKLLQFME 205
>gi|319405355|emb|CBI78972.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 320
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 6/195 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN KA+ ++ K R PL + VS+I +
Sbjct: 14 AVTILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKGRPFFNPLIVHVSDIVMAECYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+S L+ PGP+T+V H N+ + +AVR P F ++++
Sbjct: 74 KIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAVRFPKGGF-AEVIRHFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PLA SAN+S + S T I+ F+ L + + ++IDGG ++ STI+ + +ENVY +
Sbjct: 133 PLAAPSANQSGKLSPTSAISVFKSLGTLVPLIIDGG--ASKIGLESTIIKICDENVYLLR 190
Query: 217 RKGVCYDKILKILHK 231
G+ ++I K+ K
Sbjct: 191 PGGLAIEEIAKVAKK 205
>gi|338535114|ref|YP_004668448.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus fulvus HW-1]
gi|337261210|gb|AEI67370.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus fulvus HW-1]
Length = 203
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A + L++G ++A PTDT +GL CD ++ K I LY++K RD KPL+ +++
Sbjct: 15 PRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLS 74
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ ++A ++ + L PG T + + + + +V +R+PD +R+L +
Sbjct: 75 DVARYAHVSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVGIRVPDSALVRELAR 134
Query: 154 LMDSPLALTSA-NESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ PL TSA N EP T + +L L +++DGG+ N ST++ L +++
Sbjct: 135 ALGRPLVTTSATNTEGEPLTDAKDIKAELGHGLDLILDGGVTLNEP---STVISLIGDSL 191
Query: 213 YSIVRKG 219
I+R+G
Sbjct: 192 -EILRQG 197
>gi|15679686|ref|NP_276803.1| hypothetical protein MTH1692 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|22218836|pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
gi|2622823|gb|AAB86164.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 208
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 103/180 (57%), Gaps = 5/180 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A ++ G +V PTDT+YGL +A + A+ L+ +K R +KP++ICVS + +IP+++
Sbjct: 19 AISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFS 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ EL+ +LPGP T+V R+E + + ++V +R+PD + R++ P+
Sbjct: 79 RPSGDAMELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRIAARF--PV 136
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S +P + + E + + +V+D G + E ST++DL+ N ++R+G
Sbjct: 137 TATSANISGKPPSPRLEEIVRDLDAVDLVLDAGDCLDME--PSTVIDLT-VNPPRVLRRG 193
>gi|448381307|ref|ZP_21561510.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena thermotolerans
DSM 11522]
gi|445663115|gb|ELZ15869.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena thermotolerans
DSM 11522]
Length = 195
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 16/199 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G +V PT+T+YGLA DA + A+ ++E+K RD +KP+++ V + +
Sbjct: 7 AAEAIEEGKLVVYPTETVYGLAADALSPAAVERVFEVKGRDRSKPVSMAVPSVPSALQHV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT++ R E + EL +V +R+PDH +L + +P+
Sbjct: 67 RATERERQFMGTFLPGPVTVLCRRRERVPDELTAGQDRVGIRVPDHAVALRLCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVI------DGGIISNPERFGSTIVDLSEENVY 213
TSAN S S I++ + + V+ DGG ST+VD+S ++
Sbjct: 127 TSTSANVSGRESARRIDDLDPEIREAATVVLGSGETDGGTE-------STVVDVSSGTIH 179
Query: 214 SIVRKGVCYDKILKILHKY 232
R+G D+I L ++
Sbjct: 180 ---RRGAMADEIEAWLERH 195
>gi|313673749|ref|YP_004051860.1| sua5/ycio/yrdc/ywlc family protein [Calditerrivibrio nitroreducens
DSM 19672]
gi|312940505|gb|ADR19697.1| Sua5/YciO/YrdC/YwlC family protein [Calditerrivibrio nitroreducens
DSM 19672]
Length = 341
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
LP+K+ ++ + +A +A++ + G + +PT+T+YG+A NS AI ++E K R
Sbjct: 5 LPTKIITLTEENFKEALKIASEIISNGGIAVIPTETVYGIAASIYNSDAIQKIFEAKNRP 64
Query: 81 VNKPLAICVSEITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVA 139
++ PL + +S+ + D + S +L+ + PGP+T++F E ++ ++ + +A
Sbjct: 65 MDNPLIVHISDPKQLNDLTDEINETSRKLIQQFWPGPLTLIFKAKEGVDKKVTGGLNTIA 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGII 194
VR+PD+ F +L++ M PLA SAN S +PS I++ F++L ++ V++D GI+
Sbjct: 125 VRMPDNAFTLKLIE-MTGPLAAPSANISGKPSGTEISDIFEELNGKVDVIVDEGIV 179
>gi|374311624|ref|YP_005058054.1| Sua5/YciO/YrdC/YwlC family protein [Granulicella mallensis
MP5ACTX8]
gi|358753634|gb|AEU37024.1| Sua5/YciO/YrdC/YwlC family protein [Granulicella mallensis
MP5ACTX8]
Length = 214
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 9/183 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
Q L G VVALPTDT YGLA D N +A++ +Y++K R +KPL++ ++++ + A
Sbjct: 23 QHLNSGEVVALPTDTFYGLAVDPVNLRAVDRIYDLKSRARHKPLSLLIADVAQAYELARG 82
Query: 102 HTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+F+ LAE PGP+TI+ L L + N VA+R+P+ R ++ + P+
Sbjct: 83 IDTAFDRLAERFWPGPLTIIVKAGSKLPLRVTANTGNVALRVPEAPICRAVVAKLGLPIT 142
Query: 161 LTSANESNEPS---TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS-EENVYSIV 216
TSAN P C+ + + ++ +++DGG S +TIVDLS N + I+
Sbjct: 143 ATSANLRGLPECSYAGCVRD--QFGDKIPLIVDGGPTS--RSMATTIVDLSGGGNSWMIL 198
Query: 217 RKG 219
R+G
Sbjct: 199 REG 201
>gi|448734981|ref|ZP_21717200.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus salifodinae DSM
8989]
gi|445799035|gb|EMA49417.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus salifodinae DSM
8989]
Length = 194
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 17/198 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G VV PT+T+YGLA DA ++ A+ ++ +K RD +KP+++ V ++ ++
Sbjct: 7 AATAIREGEVVVYPTETVYGLAADALSTAAVERVFAVKGRDRSKPISLAVPDVETAAEYT 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDH----KFLRQLLKLM 155
+ E LPGPVT++ E + L +V VR+PDH FLR++
Sbjct: 67 RPTAQEKRFMDEFLPGPVTVLVEAREAVPDVLTAGGDQVGVRVPDHPTALAFLREV---- 122
Query: 156 DSPLALTSANESNEPSTLCINEFQKLWSQLS-VVIDGGI-ISNPERFGSTIVDLSEENVY 213
+PL TSAN S PS + S VIDGG + E ST+VD++E ++
Sbjct: 123 -APLTATSANVSGNPSARRAEAVDAAVREASAAVIDGGDELPGTE---STVVDVAERTIH 178
Query: 214 SIVRKGVCYDKILKILHK 231
R+G D+I L +
Sbjct: 179 ---RRGARADEIAAWLER 193
>gi|108757718|ref|YP_632028.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
gi|108461598|gb|ABF86783.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
Length = 203
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A + L++G ++A PTDT +GL CD ++ K I LY++K RD KPL+ +++
Sbjct: 15 PRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLS 74
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ ++A ++ + L PG T + + + + +V +R+PD +R+L +
Sbjct: 75 DVARYAHVSNFAYRTMKSLTPGAFTFILEATRLVPDLMMSKQKQVGIRVPDSALVRELTR 134
Query: 154 LMDSPLALTSA-NESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ PL TSA N EP T + L L +++DGG+ N ST++ L +++
Sbjct: 135 ALGRPLVTTSATNTEGEPLTDAKDIKADLGHGLDLILDGGVTLNEP---STVISLIGDSL 191
Query: 213 YSIVRKG 219
I+R+G
Sbjct: 192 -EILRQG 197
>gi|429736923|ref|ZP_19270798.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 138
str. F0429]
gi|429153705|gb|EKX96478.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 138
str. F0429]
Length = 350
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT---DIPK 97
A ++ G +VA PT+T+YGL + ++ A +YE K R + PL + ++++ D+
Sbjct: 18 AALIRSGALVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLILHIADLAMAHDV-- 75
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ +++ LL PGP+T++ ++ H+ + ++ V VR PDH R+L++
Sbjct: 76 ASEVPSLAAHLLTAFAPGPLTVILPKAPHIPDIVTGGLSTVGVRCPDHDIARRLIRAAGV 135
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + + ++ +++DGG R G STIVD +EE V +
Sbjct: 136 PIAAPSANTSGRPSPTTAAMVYADMAGRIPLILDGGSC----RLGVESTIVDCTEEGVVT 191
Query: 215 IVRKGVCYDKIL 226
I+R G +++
Sbjct: 192 ILRPGAITREMM 203
>gi|220932631|ref|YP_002509539.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168]
gi|219993941|gb|ACL70544.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168]
Length = 364
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 11/211 (5%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K I+K+ + A A L+KG VVA PT+T+YGL DAT+ A+ +++ K R +
Sbjct: 18 KKQDILKLKENDAIREGASLLQKGEVVAFPTETVYGLGADATSESAVKKIFKAKGRPRDN 77
Query: 84 PLAICVSEIT---DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAV 140
PL + + E+ DI K + T L+ PGP+T++F + E + + VAV
Sbjct: 78 PLIVHIGEMDQLYDIIKNPLSDTTR-RLIKHFWPGPLTLIFEKKETIPGVTTAGLESVAV 136
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPER 199
R PD+ R L+ L P+A SAN S PS T + F+ L ++ +IDGG P
Sbjct: 137 RFPDNPVARALIGLSSVPVAAPSANLSGSPSPTRAEHVFKDLKGRIPFIIDGG----PSS 192
Query: 200 FG--STIVDLSEENVYSIVRKGVCYDKILKI 228
G ST++D+ N + GV ++I ++
Sbjct: 193 VGVESTVIDIRSGNPVILRPGGVTREEIAEV 223
>gi|121602316|ref|YP_988708.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583]
gi|421760517|ref|ZP_16197333.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis INS]
gi|120614493|gb|ABM45094.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583]
gi|411174934|gb|EKS44961.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis INS]
Length = 320
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LKKG +V LPT+T+YGLA DATN KA+ ++ IK R PL VS I +
Sbjct: 14 AVEILKKGQLVVLPTETVYGLAGDATNGKAVASIFAIKGRPQFNPLIAHVSSIKMAECYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T+V H N+ + +AVR PD F ++++
Sbjct: 74 EIDCLSRRLMEAFWPGPLTLVLPLKPHHNIHPLTTAGLNTLAVRFPDGGF-AEIVQCFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T + F L ++S++ID G P + G STIV + + N+Y
Sbjct: 133 PLAAPSANQSGYLSPTSAASVFDSLGEKVSLIIDNG----PAKIGLESTIVKVCDGNIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ + I K++ K
Sbjct: 189 LRPGGIIAEDIEKVVEK 205
>gi|448579064|ref|ZP_21644380.1| DNA binding protein, translation factor [Haloferax larsenii JCM
13917]
gi|445724417|gb|ELZ76050.1| DNA binding protein, translation factor [Haloferax larsenii JCM
13917]
Length = 202
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G V PT+T+YG+ DAT+ +A+ +++IK RD +KPL+ ++ +
Sbjct: 14 AAAAIRDGDAVVYPTETVYGMGADATSPEAVERVFDIKGRDRDKPLSAGFPDVDSALDYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R E L L +V VR+PDH +L + ++P+
Sbjct: 74 EVTDHEEAFMRRFLPGPVTVVVERRESLPDVLVSGRDRVGVRVPDHDLALELFRAAETPV 133
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++ V+DGG E ST+VD + V+ R+
Sbjct: 134 TATSANLSGAGSITNPSQLPDEILDAVAAVLDGGTTPGTE---STVVDPGQGIVH---RR 187
Query: 219 GVCYDKILKILHKY 232
G D I L +
Sbjct: 188 GAMADDIEAWLETH 201
>gi|115380236|ref|ZP_01467257.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
gi|310821629|ref|YP_003953987.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1]
gi|115362760|gb|EAU61974.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
gi|309394701|gb|ADO72160.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
Length = 203
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 7/188 (3%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A + L +G +VA PTDT YGL CD + KAI LY++K RD KPL+ +++
Sbjct: 15 PRHVSRAVEVLSRGGLVAYPTDTYYGLGCDLASKKAIERLYQLKGRDKKKPLSFLCPDLS 74
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ K+A ++ + L PG T + + + + +V +R+PD R L
Sbjct: 75 DVAKYAHVSNFAYRTMKGLTPGAFTFILEATRIVPDMMMSRQKQVGIRVPDAPLARALAA 134
Query: 154 LMDSPLALTSA-NESNEPSTLCINEFQKLWSQLSVVIDGGI-ISNPERFGSTIVDLSEEN 211
+ PL TSA +E EP + ++L L +++DGG+ + P ST+V L ++
Sbjct: 135 GLGRPLVTTSASDEEGEPLIDARDIKERLGHGLDLILDGGVTLIEP----STVVSLIGDS 190
Query: 212 VYSIVRKG 219
+ I+R+G
Sbjct: 191 I-EILRQG 197
>gi|405374103|ref|ZP_11028673.1| Sua5/YciO/YrdC/YwlC family protein [Chondromyces apiculatus DSM
436]
gi|397087115|gb|EJJ18177.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus sp. (contaminant ex
DSM 436)]
Length = 203
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A + L++G ++A PTDT +GL CD ++ K I LY++K RD KPL+ +++
Sbjct: 15 PRHLQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLS 74
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ ++A ++ + L PG T + + + + +V +R+PD +R+L +
Sbjct: 75 DVARYAHVSNFAYRTMKGLTPGAFTFILEATRLVPDLMMSKQKQVGIRVPDSPLVRELAR 134
Query: 154 LMDSPLALTSA-NESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ PL TSA N EP T + +L L +++DGG+ N ST++ L +++
Sbjct: 135 ALGRPLVTTSATNTEGEPLTDAKDIKAELGHGLDLILDGGVTLNEP---STVISLIGDSL 191
Query: 213 YSIVRKG 219
I+R+G
Sbjct: 192 -EILRQG 197
>gi|87306381|ref|ZP_01088528.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
[Blastopirellula marina DSM 3645]
gi|87290560|gb|EAQ82447.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
[Blastopirellula marina DSM 3645]
Length = 380
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 119/227 (52%), Gaps = 25/227 (11%)
Query: 29 VKVTDPKAAL-------LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV 81
V+V D KAA A Q L +G VVA PT+T+YG+A A NS AI+ L E K R
Sbjct: 3 VRVIDVKAAEDRRDVIHRAVQALAEGQVVAFPTETVYGVAVSALNSGAIDRLMEAKGRPK 62
Query: 82 NKPLAICVSEITDIPKWADTHTVSFELLA-ELLPGPVTIVF----NRS--EHLNLELNPN 134
N+P A+ + ++ + T + LA PGPVT+V RS + L + P
Sbjct: 63 NQPFALAIRSKDELADYVPQATPLMKRLATRCWPGPVTLVLPCDDPRSVVQSLPASVIPA 122
Query: 135 VTK---VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVID 190
+ V +RIP H +++ ++L+ PLALTSAN S +P + +E + L L +V+D
Sbjct: 123 IAPSGFVGLRIPSHDLIQEAMRLLPGPLALTSANRSGQPDAVRGSEVTEALGDALGLVLD 182
Query: 191 GG--IISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLV 235
G S P ST+V + +V I+R GV +KILK L Y +V
Sbjct: 183 CGKCRYSQP----STVVRVVGNHV-EILRSGVVSEKILKRLSSYCVV 224
>gi|397670130|ref|YP_006511665.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium propionicum
F0230a]
gi|395142614|gb|AFN46721.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium propionicum
F0230a]
Length = 217
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 5/183 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + + +G V PTDT+YG+ C A ++KA+ L E KKR + P + ++E + + A
Sbjct: 22 AREAVAEGQCVVFPTDTVYGIGCAAFDAKAVTGLLEAKKRGRDMPPPVLIAEASMLRALA 81
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+A PG +TI+ L L+L VAVR+PDH R LL+ P
Sbjct: 82 GQVPEAARKLVARFWPGALTIIVKAQRSLPLDLGETRGTVAVRVPDHDQARALLRRT-GP 140
Query: 159 LALTSANESNEPSTLCINEFQKLWSQ-LSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A++SAN S +P+ E +++ ++ ++V +DGG P STI+D + + ++R
Sbjct: 141 MAVSSANVSGQPAATTAGEARRMLAEAVAVYLDGG--RAPGGKASTIIDFTGDEHGRVLR 198
Query: 218 KGV 220
+G
Sbjct: 199 QGA 201
>gi|373855347|ref|ZP_09598093.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus sp. 1NLA3E]
gi|372454416|gb|EHP27881.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus sp. 1NLA3E]
Length = 347
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 10/185 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ LK V+A PT+T+YGL +A NS+A+ ++ K R + PL I ++EI+ + ++
Sbjct: 24 AAKFLKDNEVIAFPTETVYGLGGNAENSEAVAKIFAAKGRPSDNPLIIHIAEISQLEEFV 83
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDS 157
+D V+ L+ + PGP+TIV N+ E EL + VAVR+PDH L+K
Sbjct: 84 SDVPQVAAVLMEKFWPGPLTIVLNKKEGQLSELATAGLPTVAVRMPDHPLALALIKASGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN+S +PS TL + L +++ ++DGG P G ST++D + E +
Sbjct: 144 PIAAPSANQSGKPSPTLARHVHDDLNGKIAGIVDGG----PTGVGLESTVIDCTNE-IPV 198
Query: 215 IVRKG 219
I+R G
Sbjct: 199 ILRPG 203
>gi|448611122|ref|ZP_21661756.1| DNA binding protein, translation factor [Haloferax mucosum ATCC
BAA-1512]
gi|445743554|gb|ELZ95035.1| DNA binding protein, translation factor [Haloferax mucosum ATCC
BAA-1512]
Length = 202
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 7/200 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G VV PT+T+YG+ DATN A+ +++ K RD +KPL+ + ++
Sbjct: 8 AADAVRHGEVVVYPTETVYGMGADATNPDAVERVFDTKGRDRDKPLSAGFPSVDAALEYV 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T + + LPGPVT+V R + L L +V VR+PDH + D+P+
Sbjct: 68 VTTDLEVAFMRRFLPGPVTVVVERRDALPDVLVAGRDRVGVRVPDHDLACDFFERADTPV 127
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ + ++VV+DGG E ST+VD ++ R+
Sbjct: 128 TATSANRSGTGSITNPSQLSDDVREAVAVVLDGGTTPGTE---STVVDPGRGIIH---RR 181
Query: 219 GVCYDKILKILHKYHLVEKN 238
G D I L ++ E +
Sbjct: 182 GAMADDIETWLAEHADSEPD 201
>gi|147919401|ref|YP_686860.1| YrdC family translation factor [Methanocella arvoryzae MRE50]
gi|110622256|emb|CAJ37534.1| putative translation factor (YrdC family) [Methanocella arvoryzae
MRE50]
Length = 192
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA + KG V+A PT+T+YG+ AT+ KAI+ ++++K+R + PL+I VS I + +
Sbjct: 9 LAADIILKGGVIAYPTETVYGIGALATDVKAISRVFKVKRRPESMPLSIAVSSIEMLQEV 68
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A+ V + + + LPGPVT++ + L L V +R PDH L++ P
Sbjct: 69 AE--IVHPDFIEKFLPGPVTVILRKKPVLPDSLTAGSDYVGIRFPDHPVALDLIRRT-GP 125
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
+ TSAN EP + +E + ++ +++GG STIVDL E Y ++RK
Sbjct: 126 IVSTSANLHGEPDPVTADE---VTVEVDYLLEGGRAKYAG--SSTIVDLRE---YKVLRK 177
Query: 219 GVCYDKILKILHK 231
G YD++ + + K
Sbjct: 178 GAMYDEVEEYMRK 190
>gi|355625588|ref|ZP_09048323.1| hypothetical protein HMPREF1020_02402 [Clostridium sp. 7_3_54FAA]
gi|354821281|gb|EHF05672.1| hypothetical protein HMPREF1020_02402 [Clostridium sp. 7_3_54FAA]
Length = 354
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKW 98
AA+ LK G +VA PT+T+YGL +A + KA +YE K R + PL V++ + P
Sbjct: 25 AAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAHVADFEGLRPLV 84
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L PGP+T++F +S+ + L + VAVR+P R+L++L P
Sbjct: 85 SRIPENGIKLAKAFWPGPMTLIFPKSDLVPLGTTGGLDTVAVRMPSDPVARELIRLAGVP 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + FQ + ++ +++DGG P G STIVD++EE + +
Sbjct: 145 VAAPSANTSGRPSPTRAEHVFQDMNGRIEMILDGG----PVGIGVESTIVDVTEE-IPVM 199
Query: 216 VRKGVCYDKILKILHK 231
+R G +++LH+
Sbjct: 200 LRPGAV---TMEMLHE 212
>gi|323485388|ref|ZP_08090736.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum
WAL-14163]
gi|323401251|gb|EGA93601.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum
WAL-14163]
Length = 354
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKW 98
AA+ LK G +VA PT+T+YGL +A + KA +YE K R + PL V++ + P
Sbjct: 25 AAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAHVADFEGLRPLV 84
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L PGP+T++F +S+ + L + VAVR+P R+L++L P
Sbjct: 85 SRIPENGIKLAKAFWPGPMTLIFPKSDLVPLGTTGGLDTVAVRMPSDPVARELIRLAGVP 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + FQ + ++ +++DGG P G STIVD++EE + +
Sbjct: 145 VAAPSANTSGRPSPTRAEHVFQDMNGRIEMILDGG----PVGIGVESTIVDVTEE-IPVM 199
Query: 216 VRKGVCYDKILKILHK 231
+R G +++LH+
Sbjct: 200 LRPGAV---TMEMLHE 212
>gi|344213265|ref|YP_004797585.1| DNA binding protein [Haloarcula hispanica ATCC 33960]
gi|343784620|gb|AEM58597.1| DNA binding protein [Haloarcula hispanica ATCC 33960]
Length = 194
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 45 KKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTV 104
+ G +V PT+T+YGL DA N+ A+ ++E K R+ +KP+++ V ++ ++ TH
Sbjct: 12 RDGELVVYPTETVYGLGADALNANAVERVFEAKGRERDKPVSMAVPDVESAREY--THPS 69
Query: 105 SFEL--LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
EL + E LPGPVT+V R + + L +V VR+PDH +LL PL T
Sbjct: 70 DRELAFMREFLPGPVTVVVERRDAVPDVLVAGRDRVGVRVPDHDLALELLAET-GPLTAT 128
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCY 222
SAN S PS I+ + + +VV+D G GST+V++ + +I R+G
Sbjct: 129 SANISGNPSARTIDGLDTIRERAAVVLDAGETDGG--TGSTVVNV---DTGTIHRRGAHA 183
Query: 223 DKI 225
D +
Sbjct: 184 DAV 186
>gi|124486054|ref|YP_001030670.1| translation factor SUA5 [Methanocorpusculum labreanum Z]
gi|124363595|gb|ABN07403.1| translation factor SUA5 [Methanocorpusculum labreanum Z]
Length = 198
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L + +V PT+T+YGL DA + A+ +YE K+R + KP+++ VS+I I A
Sbjct: 13 AVRVLSRDGLVVYPTETVYGLGADALSDTAVIKVYEAKQRPLGKPISVAVSDIEMIYGIA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
D + +++ LPGPVTIV L +L+ + +R PDH +L+ + D P+
Sbjct: 73 DVSPFAERFISKFLPGPVTIVLPVKNCLPGDLSGGTGTIGIRYPDHTLALELISMFDCPI 132
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S E S + +++ L +DGG++ ST+V+L N I R G
Sbjct: 133 TATSANISGEISPVSVDQVNVPHDYL---LDGGVLPG---IPSTVVNLETRN---IERPG 183
Query: 220 VCYDKILKIL 229
D I +
Sbjct: 184 AMLDDIARFF 193
>gi|375087340|ref|ZP_09733719.1| Sua5/YciO/YrdC/YwlC family protein [Megamonas funiformis YIT 11815]
gi|374561315|gb|EHR32657.1| Sua5/YciO/YrdC/YwlC family protein [Megamonas funiformis YIT 11815]
Length = 345
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 9/199 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D +A A QC+K G +VA PT+T+YGL D N A +Y K R + PL + +++
Sbjct: 12 DDEALKRAGQCIKDGGLVAFPTETVYGLGGDGLNEVAAKNIYLAKGRPSDNPLILHINDQ 71
Query: 93 TDIPKWADTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + T ++ +++ PGP+TI+ +S + + + +AVR+PD+ R L
Sbjct: 72 KMLGRIVSEVTPMAKKIMTAFCPGPITIILPKSNIVPKAVTGGLDTIAVRMPDNDIARAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+K D+P+A SAN S PS T ++ L S++ +V+DGG +FG STIVD +
Sbjct: 132 IKYADTPIAAPSANISGRPSPTTAQAVYKDLQSRIDMVLDGGAC----QFGVESTIVDCT 187
Query: 209 EENVYSIVRKGVCYDKILK 227
E+ V I+R G ++L+
Sbjct: 188 ED-VPIILRPGAITKEMLE 205
>gi|309775205|ref|ZP_07670216.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308917024|gb|EFP62753.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 234
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 10/233 (4%)
Query: 5 LHSFFTLGLFY----HNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGL 60
H F ++ F+ +NA +C + D K AQ LK+G VVA PTDT+YGL
Sbjct: 4 FHHFLSVMFFHVILCYNADNGKEMICMETRRFDKKDVKEVAQYLKEGKVVAFPTDTVYGL 63
Query: 61 ACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIV 120
N +A+ L E K R NKP+ V+ + + + A + + +L +PG T++
Sbjct: 64 GVIYENEEALQALKESKGRPENKPIPTMVANVEQMQQIAVMNEAACKLAKAFMPGAFTMI 123
Query: 121 FNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK 180
+ E L + V +R+P+ F+ QL+ PL +TSAN S E + + ++
Sbjct: 124 LKKKETLPAYVTNGFPTVGIRMPNDPFVLQLIAECGKPLLVTSANRSGEETGV---RDEQ 180
Query: 181 LWSQLSVVIDGGIISNPE-RFGSTIVDLSEENVYSIVRKG-VCYDKILKILHK 231
+ QL ID ++ + + STIVD+S + +VR+G V + I K+L K
Sbjct: 181 VLKQLDGRIDAIVLGEADGKLASTIVDMSTQEAV-LVREGPVTAEDIQKVLCK 232
>gi|323694150|ref|ZP_08108329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum
WAL-14673]
gi|323501867|gb|EGB17750.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum
WAL-14673]
Length = 354
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKW 98
AA+ LK G +VA PT+T+YGL +A + KA +YE K R + PL V++ + P
Sbjct: 25 AAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAHVADFEGLRPLV 84
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L PGP+T++F +S+ + L + VAVR+P R+L++L P
Sbjct: 85 SRIPENGIKLAKAFWPGPMTLIFPKSDLVPLGTTGGLDTVAVRMPSDPVARELIRLAGVP 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + FQ + ++ +++DGG P G STIVD++EE + +
Sbjct: 145 VAAPSANTSGRPSPTRAEHVFQDMNGRIEMILDGG----PVGIGVESTIVDVTEE-IPVM 199
Query: 216 VRKGVCYDKILKILHK 231
+R G +++LH+
Sbjct: 200 LRPGAV---TMEMLHE 212
>gi|300769987|ref|ZP_07079866.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762463|gb|EFK59280.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
ATCC 33861]
Length = 206
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 9/190 (4%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAICVSEIT 93
KA LK+G V+ PTDT+YG+ CD TN KAI + EI+ V+K L+ ++T
Sbjct: 13 KAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGMKVDKANLSFICYDLT 72
Query: 94 DIPKWADTHTVS-FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
DI ++ S F +L + LPGP T +FN S + L+ V +R+PD+ +R+++
Sbjct: 73 DISQYTKPFDTSVFRVLKKALPGPFTFIFNASGQVPKLLSSKKKTVGIRVPDNHIVREIV 132
Query: 153 KLMDSPLALTSANESN---EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE 209
+++ +P+ S + + E ST +K + + +VIDGG N ST+VDL+
Sbjct: 133 RVLGNPIVTASIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGDN---VASTVVDLTG 189
Query: 210 ENVYSIVRKG 219
+ + IVR+G
Sbjct: 190 GD-FEIVREG 198
>gi|442321027|ref|YP_007361048.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus stipitatus DSM
14675]
gi|441488669|gb|AGC45364.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus stipitatus DSM
14675]
Length = 203
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A + L++G +VA PTDT YG+ CD + KAI LY++K RD KPL+ +++
Sbjct: 15 PRHIQRAVEVLERGGLVAYPTDTYYGMGCDLGSKKAIERLYQLKGRDKKKPLSFLCPDLS 74
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ ++A ++ + L PG T + + + + +V +R+PD R+L +
Sbjct: 75 DVARYAHVSNFAYRTMKGLTPGAFTFILEATRLVPDLMMTRQKQVGIRVPDAPLARELAR 134
Query: 154 LMDSPLALTS-ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ PL TS +N EP T + L L +++DGG+ N ST+V L + +
Sbjct: 135 ALGRPLVTTSVSNLEGEPLTDARDIKDALGHGLDLILDGGVTLNEP---STVVSLIGDTL 191
Query: 213 YSIVRKG 219
I+R+G
Sbjct: 192 -EILRQG 197
>gi|269925890|ref|YP_003322513.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789550|gb|ACZ41691.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 205
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 10/205 (4%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+ D +A A KG ++A PTDT+YG+ + +A++ +Y K+R ++KP+ I +S
Sbjct: 7 IEDKEAVRQAIDFALKGELIAFPTDTVYGVGS-IVDPQAVSKIYRAKERPLDKPIPILLS 65
Query: 91 EITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
+ + + K+A D ++ EL PG +T+V E + + V RIPD++ R
Sbjct: 66 DDSYLEKYAKDIDAIAMELARTFWPGALTLVVRAREDVAEAVGSKDGTVGFRIPDYEPAR 125
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVD 206
++++ +A+TSAN S E + L ++ + L ++++++DGG P R G ST+VD
Sbjct: 126 EIIRQCGGAMAVTSANISGERNPLTADDVEHDLGDRVAIILDGG----PCRIGKPSTVVD 181
Query: 207 LSEENVYSIVRKGVCYDKILKILHK 231
LS+E IVRKG ++I IL K
Sbjct: 182 LSKEKPL-IVRKGALAEQIRAILEK 205
>gi|268325206|emb|CBH38794.1| conserved hypothetical protein, containing yrdC domain [uncultured
archaeon]
Length = 216
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 9/209 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +K+G + PT+T+YGL DA + A+ +Y+IK+RDV +P+++ VS + K A
Sbjct: 12 AIAIIKRGGTIVYPTETVYGLGADALSETAVREVYKIKRRDVTQPISVAVSSFEMLHKVA 71
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
E+++ LLPGPVT++ + E + L + VR PD++ ++++ P+
Sbjct: 72 YIDPGISEIISALLPGPVTVLLKKKEIVPALLTAESDVLGVRFPDNEIATRIIE-ETGPI 130
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN----VYSI 215
TSAN S C+ E + + + ++I G ST+VD++ N I
Sbjct: 131 TATSANVSGRTPPTCVEEVE-IEFLVDIIIHG--TKCKYSMPSTVVDMTTANEGKAKIKI 187
Query: 216 VRKGVCYDKILKILHKYHLVEK-NTFPIP 243
R+G CYD++L +L E +FP+P
Sbjct: 188 KRRGACYDRVLHVLRSKITGEGIYSFPLP 216
>gi|148263967|ref|YP_001230673.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter uraniireducens Rf4]
gi|146397467|gb|ABQ26100.1| translation factor SUA5 [Geobacter uraniireducens Rf4]
Length = 202
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 9/190 (4%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ + L KG VVA PTDT YG+ C N + I +Y IK+R+ KP + ++++
Sbjct: 12 PRLVAQVVEVLNKGGVVAYPTDTTYGIGCSIFNKRGIERIYSIKQREKKKPFSFICADLS 71
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
DI ++A +F+L+ LLPGP T V + + + L V +RIP +K ++K
Sbjct: 72 DIARYAKVSNYAFKLMKRLLPGPYTFVLDATSVVPDLLMTKQKTVGIRIPANKICLAVVK 131
Query: 154 LMDSPLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
+ P+ TSAN S E + FQ L + + IDGGI+S S++V L +
Sbjct: 132 QLGHPIVTTSANLSGEEPIG--DPFQVESYLGKLIDLTIDGGILSADV---SSVVSLIGD 186
Query: 211 NVYSIVRKGV 220
V ++RKGV
Sbjct: 187 -VPEVLRKGV 195
>gi|322418699|ref|YP_004197922.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18]
gi|320125086|gb|ADW12646.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18]
Length = 202
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 7/191 (3%)
Query: 33 DPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+ L+A + LK G VVA PTDT YG+ C + K I +Y+IK+RD KP + S
Sbjct: 9 NPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQIKQRDRKKPFSFICS 68
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
++++I ++A +F+ L LLPGP T V + + + V +R+PD+K
Sbjct: 69 DMSEISRYARVSNYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRVPDNKICLA 128
Query: 151 LLKLMDSPLALTSANESNE-PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE 209
++K + +P+ TSAN S E P +L QL +V+DGG +S S++V L
Sbjct: 129 IVKELGAPIVTTSANLSGEDPIGNPWAVEHELGRQLDLVVDGGDLSADV---SSVVSLIG 185
Query: 210 ENVYSIVRKGV 220
+ ++RKGV
Sbjct: 186 DRP-EVLRKGV 195
>gi|322435977|ref|YP_004218189.1| Sua5/YciO/YrdC/YwlC family protein [Granulicella tundricola
MP5ACTX9]
gi|321163704|gb|ADW69409.1| Sua5/YciO/YrdC/YwlC family protein [Granulicella tundricola
MP5ACTX9]
Length = 214
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Query: 33 DPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+ AL+ A ++ G +VALPTDT YGLA D N +A+ +Y +K R +KPL++ ++
Sbjct: 12 EPEPALVDYIAGRIESGLLVALPTDTFYGLAVDPVNLRAVERIYHLKNRARHKPLSLLIA 71
Query: 91 EITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
++ A +F+ LAE PGP+TI+ L L + N VA+R+P+ R
Sbjct: 72 DVAQAYGLARECDTAFDRLAERFWPGPLTIIVKAGSKLPLRVTANTGNVALRVPEAPIAR 131
Query: 150 QLLKLMDSPLALTSAN-ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
++ + P+ TSAN E + T ++L ++ +++DGG + +TIVDLS
Sbjct: 132 AVVAKLGLPITATSANLEGHAECTSASGVREQLGDKIPLIVDGGPTA--RTVATTIVDLS 189
Query: 209 -EENVYSIVRKG 219
N ++I+R+G
Sbjct: 190 GGGNSWTILREG 201
>gi|291532654|emb|CBL05767.1| translation factor SUA5 [Megamonas hypermegale ART12/1]
Length = 271
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 9/199 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D +A A QC+K G +VA PT+T+YGL D N A +Y K R + PL + +++
Sbjct: 12 DDEALKRAGQCIKDGGLVAFPTETVYGLGGDGLNEVASKNIYLAKGRPSDNPLILHINDQ 71
Query: 93 TDIPKWADTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + T ++ +++ PGP+TI+ +S + + + +AVR+PD+ R L
Sbjct: 72 KMLGRIVSEVTPMAKKIMTAFCPGPITIILPKSNIVPKAVTGGLDTIAVRMPDNDIARAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+K D+P+A SAN S PS T ++ L S++ +V+DGG +FG STIVD +
Sbjct: 132 IKYADTPIAAPSANISGRPSPTTAQAVYKDLQSRIDMVLDGGAC----QFGVESTIVDCT 187
Query: 209 EENVYSIVRKGVCYDKILK 227
E+ V I+R G ++L+
Sbjct: 188 ED-VPIILRPGAITKEMLE 205
>gi|189424902|ref|YP_001952079.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ]
gi|189421161|gb|ACD95559.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ]
Length = 203
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 1/164 (0%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ CLK G +VA PTDT YGL C N K + +Y++K+RD KP + S+++
Sbjct: 12 PRQIAQVVDCLKNGGIVAYPTDTTYGLGCSIFNKKGLERIYQVKQRDKRKPFSFICSDLS 71
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
++ ++A +F+++ LPGP T V S + L V +R+PD+ +++
Sbjct: 72 EVSRYARLTNHAFKIMKRYLPGPYTFVLEASREVPDLLITKQKTVGIRMPDNAICLSIVQ 131
Query: 154 LMDSPLALTSANESNEPSTLCINEFQKLWSQ-LSVVIDGGIISN 196
+ P+ TSAN S E E +L+ L +V+DGG+++
Sbjct: 132 GLGVPIVTTSANLSGEDPVGDPLEINRLFGHALDLVVDGGLLTT 175
>gi|297619997|ref|YP_003708102.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3]
gi|297378974|gb|ADI37129.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3]
Length = 209
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 112/195 (57%), Gaps = 8/195 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK G + PTDT+YG+ A + ++ +Y+IK RD +KP +I + + +DI K+A
Sbjct: 15 AKKYLKNGEIALCPTDTIYGICGYALDKNVVDRIYKIKNRDESKPFSISLQKKSDIQKYA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ V+ +L+ + LPGP+T++ + E + + + V +RIPD K +L+L + P+
Sbjct: 75 KVNNVAKKLINKFLPGPITLILPKKESIPDYICKDY--VGIRIPDSKI---ILELSEIPI 129
Query: 160 ALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S PS+ I++ K + + + ++ID G + STIV + + ++ I
Sbjct: 130 TSTSANVSGRPSSYSISKMDKEILNSVDIIIDDG--DCEYKKPSTIVKIIDNDIELIREG 187
Query: 219 GVCYDKILKILHKYH 233
+ +D ILK L+ Y+
Sbjct: 188 SISFDNILKELNLYN 202
>gi|390565304|ref|ZP_10245981.1| Sua5/YciO/YrdC/YwlC family protein [Nitrolancetus hollandicus Lb]
gi|390171445|emb|CCF85315.1| Sua5/YciO/YrdC/YwlC family protein [Nitrolancetus hollandicus Lb]
Length = 216
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 13/218 (5%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
+ I++ TDP+A AA+ L G +V PTDT+YGLA A+ LY K R +++P
Sbjct: 6 LPEIIRETDPQAVHKAAEVLANGGLVVFPTDTVYGLAASIDRPDAVARLYTAKGRPLDRP 65
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELL-----PGPVTIVFNRSEHLNLELNPNVTKVA 139
+ + VS + A+ T S + + LL PG +TI+ ++ L E+ + +V
Sbjct: 66 IPVLVSSR----RQAERLTASMDRRSRLLTERFWPGGLTILLPAADWLPFEVVRDTGQVG 121
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPE 198
VR+PDH+ +++ LA TSAN S EP + + L S + +++DGG
Sbjct: 122 VRMPDHRLALAIIEASGGALATTSANRSGEPEAKTAEQARDVLGSAVDLILDGGTGGG-- 179
Query: 199 RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
ST+V S ++ + R + +++L+ + L +
Sbjct: 180 -VPSTVVRFSGNDLIVLRRGAIEPERLLQAIEGARLAD 216
>gi|366086229|ref|ZP_09452714.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus zeae KCTC 3804]
Length = 340
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVDAVGKVYAAKGRPSDNPLIVTVADAAMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+A PGP+T++ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPAAAKLMATFWPGPLTMILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + L +++ V+D G P R G STIVDL+ +I
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLSGKIAGVLDDG----PTRVGVESTIVDLT-VTPPAI 187
Query: 216 VRKG-VCYDKILKIL----HKYHLVEKNTFP 241
+R G + D++ IL H V KN P
Sbjct: 188 LRPGAIGPDELEPILGPVDSAIHHVGKNEAP 218
>gi|328957993|ref|YP_004375379.1| putative ribosome maturation factor; RNA binding protein
[Carnobacterium sp. 17-4]
gi|328674317|gb|AEB30363.1| putative ribosome maturation factor; RNA binding protein
[Carnobacterium sp. 17-4]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L AAQ +++G +++ PT+T+YGL DATN A+ +Y K R + PL + VS I ++ +
Sbjct: 2 LKAAQKIQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSTIEEVEQ 61
Query: 98 W-ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT----KVAVRIPDHKFLRQLL 152
+ + V+ +L+ PGP+T++F +H+ P VT VA+R+PD++ QL+
Sbjct: 62 YVQEVPEVAKKLMQTFWPGPLTLIFKVKDHV---FAPTVTAGLASVAMRMPDNEVTLQLI 118
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ PL SAN S +PS T + + L +++ V+D G ST++D+++
Sbjct: 119 RKSGKPLVGPSANTSGKPSPTTADHVYHDLKGKIAGVLDDG--DTGLGLESTVLDITDPK 176
Query: 212 VYSIVRKGVCYDKILK-----ILHKYHLVEKNTFP 241
+ +I+R G + L+ + HL+ + P
Sbjct: 177 LPTILRPGATTKEALEKVIGTVFVDRHLISNDEVP 211
>gi|238927404|ref|ZP_04659164.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC
43531]
gi|238884686|gb|EEQ48324.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC
43531]
Length = 350
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +VA PT+T+YGL + ++ A +YE K R + PL + +++++ + + A
Sbjct: 17 AAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLILHIADLSMLNETA 76
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + LL PGP+T+V ++ H+ + ++ V VR P H R+ ++ P
Sbjct: 77 EAVPSTAAHLLTAFAPGPITVVVPKAVHVPPLVTGGLSTVGVRCPAHDIARRFIRAAGVP 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + + ++ +++DGG S FG STIVD +EE +I
Sbjct: 137 IAAPSANTSGRPSPTAAAMVYADMAGRIPLILDGGSCS----FGVESTIVDCTEEGRVTI 192
Query: 216 VRKG-VCYDKI 225
+R G V Y+ I
Sbjct: 193 LRPGAVTYEMI 203
>gi|389845747|ref|YP_006347986.1| DNA binding protein, translation factor [Haloferax mediterranei
ATCC 33500]
gi|448616633|ref|ZP_21665343.1| DNA binding protein, translation factor [Haloferax mediterranei
ATCC 33500]
gi|388243053|gb|AFK17999.1| DNA binding protein, translation factor [Haloferax mediterranei
ATCC 33500]
gi|445751288|gb|EMA02725.1| DNA binding protein, translation factor [Haloferax mediterranei
ATCC 33500]
Length = 203
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G V PT+T+YG+ DATN AI +++IK RD +KPL+ ++ ++
Sbjct: 9 AADAIRRGEAVVYPTETVYGMGADATNPDAIERVFDIKGRDRDKPLSAGFPDVDAALEYV 68
Query: 100 --DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D V+F + LPGPVT+V R + L L +V VR+PDH + +
Sbjct: 69 VVDDREVAF--MRRFLPGPVTVVVERRDSLPDVLVSGRDRVGVRVPDHDLALDFFEQAGT 126
Query: 158 PLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+ TSAN S S ++ ++ ++ V+DGG E ST+VD ++
Sbjct: 127 PVTATSANRSGTGSITNPSQLSDEIREAVAFVLDGGTTPGTE---STVVDPGRGIIH--- 180
Query: 217 RKGVCYDKILKILHKY 232
R+G D+I L +
Sbjct: 181 RRGAMADEIEAWLETH 196
>gi|383319995|ref|YP_005380836.1| translation factor SUA5 [Methanocella conradii HZ254]
gi|379321365|gb|AFD00318.1| translation factor SUA5 [Methanocella conradii HZ254]
Length = 199
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA +++G V+A PT+T+YG+ AT+ AI +Y++K R +++PL+I VS + +
Sbjct: 11 LAAGIVRRGGVIAYPTETVYGVGGLATDVDAIRRVYQLKGRPLSQPLSIAVSSMEMLESV 70
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A+ F L LPGPVT++ + + L L V +R PDH L+ P
Sbjct: 71 ANVECRDFIL--RFLPGPVTVILKKKKVLPDILTAGSKYVGIRYPDHPMALSLIS-KTGP 127
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
+ TSAN E + +E + + V+DGG ++G STIVDL E Y+IV
Sbjct: 128 IVSTSANLHGEKDPVAADEVKL---PVDYVLDGGRC----KYGAPSTIVDLHE---YAIV 177
Query: 217 RKGVCYDKILKIL 229
RKGV YD++ + +
Sbjct: 178 RKGVMYDEVRRYM 190
>gi|124007775|ref|ZP_01692477.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134]
gi|123986721|gb|EAY26502.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134]
Length = 209
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD--VNKPLAICVSEITDIPKWA 99
+CL+ G V+ PTDT+YGL CD N KA+ + +IKK + K L+ ++++ I ++A
Sbjct: 23 ECLRSGGVIIYPTDTVYGLGCDIHNQKAVEKICQIKKINPKKRKNLSFICNDLSHIAEYA 82
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+F+L+ + LPGP T + S + LN + V +RIPD+ R ++K + +P+
Sbjct: 83 RIGNATFKLMKKALPGPYTFILETSSRVPKILNISKKNVGIRIPDNNIARLIVKELGNPI 142
Query: 160 ALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
+S +E + +++ ++ +VIDGG N GSTI+D S++NV +++
Sbjct: 143 ITSSVLAEDEVVKYLTDPEDIYEQYKHKVDLVIDGG---NGSNVGSTIIDCSDDNV-TVL 198
Query: 217 RKG 219
R+G
Sbjct: 199 RQG 201
>gi|292669718|ref|ZP_06603144.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541]
gi|422343207|ref|ZP_16424135.1| hypothetical protein HMPREF9432_00195 [Selenomonas noxia F0398]
gi|292648515|gb|EFF66487.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541]
gi|355378514|gb|EHG25694.1| hypothetical protein HMPREF9432_00195 [Selenomonas noxia F0398]
Length = 350
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 105/191 (54%), Gaps = 8/191 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK-W 98
AA ++ G +VA PT+T+YGL + ++ A +YE K R + PL + ++++T +
Sbjct: 17 AAGLIQSGELVAFPTETVYGLGANGLDAAACTRIYEAKGRPSDNPLILHIADLTMAHEVT 76
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ ++ LL PGP+T++ ++ H+ + ++ V VR PDH R+L++ P
Sbjct: 77 SNMPPLAAHLLTAFAPGPITVILPKAAHIPDIVTGGLSTVGVRCPDHTAARRLIRAAGVP 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T ++ + ++ +++DGG R G STIVD +EE ++
Sbjct: 137 IAAPSANTSGRPSPTTAAMVYEDMAGRIPLILDGGSC----RLGVESTIVDCTEEGALTL 192
Query: 216 VRKGVCYDKIL 226
+R G +++
Sbjct: 193 LRPGAVTREMI 203
>gi|341820755|emb|CCC57055.1| SUA5 family translation factor [Weissella thailandensis fsh4-2]
Length = 342
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G +VA PT+T+YGL DA N KA+ +Y K R + PL + V++ + +A
Sbjct: 15 AARAIQRGSLVAFPTETVYGLGADAYNEKAVGKVYAAKGRPSDNPLIVHVADPEQVSDFA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + +L++ PGP+T++ + L++ + + VAVR+PD+ RQL++ P
Sbjct: 75 IVNERAQKLMSAYWPGPLTMILPVKPGVLSMTVTGGLDTVAVRLPDNDATRQLIRESGKP 134
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS TL + + L +++ ++D G P + G ST++DLS + + ++
Sbjct: 135 LVGPSANTSGKPSPTLAKHVYHDLHGKIAGILDDG----PTKIGVESTVLDLSSD-MPAV 189
Query: 216 VRKG 219
+R G
Sbjct: 190 LRPG 193
>gi|395792073|ref|ZP_10471512.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432992|gb|EJF98966.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 320
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +A++ ++ K R PL VS I ++
Sbjct: 14 AVALLEQGRLVALPTETVYGLAGDATNGRAVSSIFSTKNRPQFNPLIAHVSGIKMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D VS L+ PGPVT V H ++ + +AVR PD +F ++++
Sbjct: 74 DIDVVSRRLMEAFWPGPVTFVLPLKAHHDIHPLTTSGLNTLAVRFPDSRFA-EVVQCFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T + L + +++DGG P + G STI+ + E++Y
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVLESLGRSVPLILDGG----PSKIGLESTIIKICGESIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I KI K
Sbjct: 189 LRPGGLSVEEIEKIAGK 205
>gi|341583102|ref|YP_004763594.1| putative translation factor [Thermococcus sp. 4557]
gi|340810760|gb|AEK73917.1| putative translation factor [Thermococcus sp. 4557]
Length = 339
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 112/206 (54%), Gaps = 9/206 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +AA+ + G +VA PT+T+YGL DA N++A+ ++E K R + PL + +++
Sbjct: 12 DERGIKIAARFILDGKLVAFPTETVYGLGADALNARAVRRIFEAKGRPADNPLIVHIADF 71
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+D+ + A LLAE PGP+T+V R E++ + VAVR+P H L
Sbjct: 72 SDLGRLARDVPREARLLAERFWPGPLTMVLPRDENVPDVTTGGLDTVAVRMPAHPIALAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ +P+A SAN S +PS TL + + ++ +IDGG + G ST++DLS
Sbjct: 132 IR-ASTPVAAPSANISGKPSPTLAEHVIDDFYGRIECIIDGG----ETKIGVESTVIDLS 186
Query: 209 EENVYSIVRKGVCYDKILKILHKYHL 234
E + G+ ++I K++ + +
Sbjct: 187 SERPTLLRPGGLPLEEIEKVIGEVEI 212
>gi|76801361|ref|YP_326369.1| hypothetical protein NP1420A [Natronomonas pharaonis DSM 2160]
gi|76557226|emb|CAI48801.1| tRNA threonylcarbamoyladenosine biosynthesis protein YrdC
[Natronomonas pharaonis DSM 2160]
Length = 194
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +V PT+T+YGLA DA + +A+ ++E K RD +KP+++ + + ++
Sbjct: 9 AVAALRRGDLVVYPTETVYGLAADALDPEAVKRVFEAKGRDRDKPVSMALPSVAAAAEYV 68
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
LPGPVT++ R + + L +V +R+P H R L + + P+
Sbjct: 69 TFSDRERAFCEAFLPGPVTVLLERGDRVPDVLVAGRDRVGLRVPAHDIARDLARRV-GPI 127
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S PS + +VV+DGG E ST+VD++ ++ IVR+G
Sbjct: 128 TATSANVSGNPSARRPEAVDATIRERAVVVDGGETPGTE---STVVDIAADD---IVRRG 181
Query: 220 VCYDKILKILHKY 232
D I L ++
Sbjct: 182 AQADDIDAWLTEH 194
>gi|423714121|ref|ZP_17688380.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421268|gb|EJF87524.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 320
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +A++ ++ K R PL VS I ++
Sbjct: 14 AVALLEQGRLVALPTETVYGLAGDATNGRAVSSIFSTKNRPQFNPLIAHVSGIKMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D VS L+ PGPVT V H ++ + +AVR PD +F ++++
Sbjct: 74 DIDVVSRRLMEAFWPGPVTFVLPLKAHHDIHPLTTSGLNTLAVRFPDSRFA-EVVQCFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T + L + +++DGG P + G STI+ + E++Y
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVLESLGRSVPLILDGG----PSKIGLESTIIKICGESIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I KI K
Sbjct: 189 LRPGGLSVEEIEKIAGK 205
>gi|261403807|ref|YP_003248031.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius
M7]
gi|261370800|gb|ACX73549.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius
M7]
Length = 211
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 19/179 (10%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++ TDTLYG++ +A N A+ +Y+IKKRD NKPL+IC+ +I +I K+A + ++
Sbjct: 30 GKIIICGTDTLYGISANALNENAVKKIYQIKKRDYNKPLSICLKDINEIKKYAYVNELAE 89
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALTS 163
+++ LPGP+TI+ + ++ PN+ + +RIPD + +R+L + PL TS
Sbjct: 90 KIIKHFLPGPITIILKKKSNI-----PNLVSKEYIGIRIPDEEIIRELAIV---PLTTTS 141
Query: 164 ANESNEPSTLCINEFQ-KLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSIVRKG 219
AN S C+ E ++ + VID G S P STI+ + + ++ +++R+G
Sbjct: 142 ANISGGKDPTCVEEIDGEIIKNVDYVIDIGKCKYSKP----STIIKIKDSSI-TLIREG 195
>gi|406938094|gb|EKD71391.1| hypothetical protein ACD_46C00194G0005 [uncultured bacterium]
Length = 324
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 7/214 (3%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
+K+TD +A L+ G +VA PT+T+YGL DATN A+ ++ K R N PL +
Sbjct: 1 MKITDQMNQAVA--ILRAGGLVAFPTETVYGLGADATNEAAVAKIFAAKNRPKNHPLIVH 58
Query: 89 VSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
++ + + WA D + +L PGP+T++F + H+ L + +RIP H
Sbjct: 59 LASLEQVFDWAFDVSPQAKKLAKSFWPGPLTMIFKKKNHVLDALTGGQNTIGLRIPRHPI 118
Query: 148 LRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
+QLL+ +A SAN+ S T + ++L ++ +++DGG+ STI+D
Sbjct: 119 AQQLLQQFGGGIAAPSANQFTHLSPTTAEDVREELGQKVDLILDGGVCD--VGVESTIID 176
Query: 207 LSEENVYSIVRKGVCYDKILK-ILHKYHLVEKNT 239
++ I+R G+ +L+ +LH+ L + NT
Sbjct: 177 MTNTEKPRILRPGMINKTMLEAVLHEPILTQNNT 210
>gi|406886793|gb|EKD33751.1| hypothetical protein ACD_75C02606G0002 [uncultured bacterium]
Length = 229
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 105/185 (56%), Gaps = 13/185 (7%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+A L+ + LK G V+ PTDT YG+ CD N KAI + ++K+R +KP +
Sbjct: 35 NPQARLIDQVVKLLKGGAVICYPTDTGYGIGCDLFNQKAIKQIMQLKRRPHDKPFSFLCC 94
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
++TDI ++A ++ L+ + LPGP T+V ++ + + V +R+P H R
Sbjct: 95 DLTDISQYAHVSNTAYRLMKKTLPGPYTLVLPGTKLVPKVMATKQKTVGIRVPSHPISRM 154
Query: 151 LLKLMDSPLALTSANESNEPSTLC----INEFQKLWSQLSVVIDGG-IISNPERFGSTIV 205
L++ + +P+ TS ++E + L I+E+ + +++ +VIDGG I +P ST+V
Sbjct: 155 LIETLGNPIVNTSVMLADEETALAEPYLIDEY--IGNRIDLVIDGGTIFPDP----STVV 208
Query: 206 DLSEE 210
DL+ +
Sbjct: 209 DLTSD 213
>gi|68171141|ref|ZP_00544550.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa]
gi|88658214|ref|YP_507600.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str.
Arkansas]
gi|67999466|gb|EAM86106.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa]
gi|88599671|gb|ABD45140.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str.
Arkansas]
Length = 194
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 9/194 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A Q LK ++ PT+T+Y LA A + +A+ +Y+IK R NKPL++ +S I I +++
Sbjct: 5 AVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIKQFS 64
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+F+++ +L PGPVT V + L + +RIPDH ++L D+P+
Sbjct: 65 TLTEHTFKIIQKLSPGPVTFVLPIHNYNKLPRQFFNDTIGIRIPDHPIALEILSNFDNPV 124
Query: 160 ALTSANESNEPSTLCINEFQKLWSQ-LSVVI-DGGIISNPERFGSTIVDLSEENVYSIVR 217
TS N S +PS ++ Q+ Q +SV+I D +++ E ST++DL+ Y I+R
Sbjct: 125 VGTSVNISGQPSVTASHQVQETIKQHISVIIEDDSLVNGIE---STVIDLTS---YKILR 178
Query: 218 KG-VCYDKILKILH 230
G V KI I+H
Sbjct: 179 TGAVSEKKIQDIIH 192
>gi|325958344|ref|YP_004289810.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21]
gi|325329776|gb|ADZ08838.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21]
Length = 204
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 111/201 (55%), Gaps = 12/201 (5%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP A + LK+G +V PTDT+YG+A +A N A++ +++ KKR K +++C++EI
Sbjct: 12 DPDTITQAKEYLKQGKIVVYPTDTVYGIAANAYNESAVSKVFDTKKRLKTKAVSLCLAEI 71
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
I A + L+ +L PGP T++ + E ++ L K+ +RIPD+K R L
Sbjct: 72 EAINDVAFMDNKTEILVEQLFPGPFTVIMRKKEQISPLLTGGTNKIGIRIPDNKLSRDLA 131
Query: 153 KLMDSPLALTSANES--NEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ P+ TSAN S N P T ++L + +V+D G+ ++G ST+VD++
Sbjct: 132 S--EFPITSTSANISGLNVPET-PKEVVEQLGDSVDLVLDAGVC----KYGYHSTVVDMT 184
Query: 209 EENVYSIVRKGVCYDKILKIL 229
+ I+R G Y+ ++ +L
Sbjct: 185 GDKPI-ILRMGAGYETLMNLL 204
>gi|389852068|ref|YP_006354302.1| sua5 superfamily-like protein [Pyrococcus sp. ST04]
gi|388249374|gb|AFK22227.1| sua5 superfamily-like protein [Pyrococcus sp. ST04]
Length = 340
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA +++G +VA PT+T+YGL DA N +A+ ++E K R + PL + +++ + + +
Sbjct: 18 VAASLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPPDNPLIVHIADFSQVYEL 77
Query: 99 ADTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A E+LA + PGP+TIV R E + + VA+R+P H+ L+KL
Sbjct: 78 AKEVPEEAEMLAKKFWPGPLTIVLPRKELVPKVTTGGLETVAIRMPAHEIALHLIKLSGR 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
P+A SAN S +PS T + + ++ +IDGG R G ST++DL+E
Sbjct: 138 PIAAPSANISGKPSPTTAEHVIDDFYGRIECIIDGG----ETRVGVESTVIDLTE 188
>gi|257386952|ref|YP_003176725.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM
12286]
gi|257169259|gb|ACV47018.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM
12286]
Length = 193
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G +V PT+T+YGLA DA + A+ ++++K RD +KP+++ V + +
Sbjct: 7 AADAIDDGELVIYPTETVYGLAGDALDPDAVQRVFDVKGRDRSKPVSLAVPSVDAATDYT 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT++ R + L +V +R+PDH+ LL+ + +P+
Sbjct: 67 EPSERELAFMRAFLPGPVTVLARRRPSVPDVLTAGRDRVGIRVPDHELALALLERV-API 125
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S E S ++E + + +VV+DGG E ST+VD++ + IVR+
Sbjct: 126 TSTSANVSGEQSARTVDEIGESVREGTAVVLDGGRTPGTE---STVVDVAADE---IVRE 179
Query: 219 GVCYDKILKILHKY 232
G + I + L ++
Sbjct: 180 GADCEAIREWLAEH 193
>gi|354609959|ref|ZP_09027915.1| Sua5/YciO/YrdC/YwlC family protein [Halobacterium sp. DL1]
gi|353194779|gb|EHB60281.1| Sua5/YciO/YrdC/YwlC family protein [Halobacterium sp. DL1]
Length = 198
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 8/189 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
++ G +V PT+T+YGLA DA ++ A+ +++ K R + PL+ + D +
Sbjct: 15 IRDGGLVVYPTETVYGLAADALDTDAVAGVFDAKGRSRDDPLSFAFPDWEDALAYVRVDE 74
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E +AE LPGPVT+V + E + L +V VR+PDH+ LL+ + +P+ TS
Sbjct: 75 TEREFMAEFLPGPVTVVCEKREGVPDVLTGGRDRVGVRVPDHEVALALLERV-APVTATS 133
Query: 164 ANESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCY 222
AN S +PS + + + V+DGG + E ST+VD++ I+R+G
Sbjct: 134 ANRSGQPSVTDPGDLDPAFVDGVDAVLDGGETAGTE---STVVDVARGE---ILRRGADA 187
Query: 223 DKILKILHK 231
D + L +
Sbjct: 188 DTVEAWLQQ 196
>gi|406927366|gb|EKD63407.1| hypothetical protein ACD_51C00281G0004 [uncultured bacterium]
Length = 184
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 7/178 (3%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+ G VV PTDT YGLACD N KA++ LYE+K+ NKPL+I V + + K+
Sbjct: 10 EVLRNGGVVTHPTDTCYGLACDIFNQKAVDRLYELKQMPKNKPLSIIVGSLEEARKYGVF 69
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ + EL + PG +T+V +R+ + LN + + +RIP + ++LK PL+
Sbjct: 70 NDKALELAKKGWPGDLTLVLSRTSEVPTYLNNGIDTIGIRIPSDELTLEMLKRWGGPLST 129
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S + + K VVID G+I P + STIV + + + S++R+G
Sbjct: 130 TSANLSKGSNPYSSKDALK----GDVVIDVGVI--PCKKPSTIVSVVDGGI-SVLRQG 180
>gi|118594847|ref|ZP_01552194.1| Putative translation factor [Methylophilales bacterium HTCC2181]
gi|118440625|gb|EAV47252.1| Putative translation factor [Methylophilales bacterium HTCC2181]
Length = 324
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 113/196 (57%), Gaps = 9/196 (4%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
++K TD A LK G +V LPT+T+YGLA DAT++ AI ++ +KKR N PL +
Sbjct: 5 LLKATDSDCINQAVTLLKDGKLVGLPTETVYGLAADATHTSAIQEIFRVKKRPPNHPLIL 64
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
+ +++D+ +WA + +++ L + +PG ++++ +++ ++ + K+ +RIP H+
Sbjct: 65 HLPDLSDLSQWAINIPDITYALAKQFMPGSLSVLLHKNPSVSNAITGGSNKICIRIPHHE 124
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
++++ + SP+ SAN S T + Q L+ ++ V+DGG R G ST
Sbjct: 125 TTLKIIERLGSPIVAPSANIFGRISPTSAEHVMQDLFGEIDAVVDGGEC----RVGIEST 180
Query: 204 IVDLSEENVYSIVRKG 219
IVDL+ + +++R G
Sbjct: 181 IVDLTTP-IPTLLRPG 195
>gi|282163670|ref|YP_003356055.1| hypothetical protein MCP_1000 [Methanocella paludicola SANAE]
gi|282155984|dbj|BAI61072.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 197
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 15/193 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +K G V+A PT+T+YG+ AT+ A+ +Y+IK R +N+PL+I VS + + A
Sbjct: 10 AAGIVKTGGVIAYPTETVYGIGALATDVGALQRVYQIKNRPLNQPLSIAVSSMEMLKSVA 69
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
F L + LPGPVT++ +++ L L + +R PD+K L+ P+
Sbjct: 70 KVECEDFIL--KFLPGPVTVILKKNKILPDILTARSKYIGIRWPDNKMALDLIN-QTGPI 126
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
TSAN E + E + + V+DGG P R+G STIVDL E Y++VR
Sbjct: 127 VSTSANLHGEKDPVRAEEVK---IAVDYVLDGG----PCRYGAPSTIVDLHE---YTVVR 176
Query: 218 KGVCYDKILKILH 230
KG+ Y+++ + ++
Sbjct: 177 KGIMYEEVRRYMY 189
>gi|410613429|ref|ZP_11324488.1| YrdC family protein [Glaciecola psychrophila 170]
gi|410167091|dbj|GAC38377.1| YrdC family protein [Glaciecola psychrophila 170]
Length = 316
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+KG VALPT+T+YGLA DA++ A+N ++E K R N PL + + +I+ + KWA
Sbjct: 4 AVSLLQKGECVALPTETVYGLAADASDINAVNKIFEAKGRPKNHPLIVHIPDISHLEKWA 63
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+++L PGP++++ ++EH+ E+ + + +R+P H +L+ +++
Sbjct: 64 KAIPNTAYDLANLFWPGPLSLLLKKAEHVPYEITGGLDTIVLRVPAHPLFLDVLRKLNTG 123
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S T+ Q L +++ V++GG + STI+DL E I+R
Sbjct: 124 LAAPSANRYKHLSPTITKQVMQGLDGRIAAVLEGGACEH--GLESTILDLVSEKP-RILR 180
Query: 218 KG 219
G
Sbjct: 181 AG 182
>gi|148269220|ref|YP_001243680.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga petrophila RKU-1]
gi|147734764|gb|ABQ46104.1| translation factor SUA5 [Thermotoga petrophila RKU-1]
Length = 335
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L+ G V+ PT+T+YG+ DA N +A ++E+K R + PL + + + + A
Sbjct: 20 AVELLRNGEVIIFPTETVYGIGADAYNEEACRKIFELKGRPTDNPLIVHIHSFDQLEEIA 79
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + L + PGP+T++ +SE + L + ++ VAVR+P H +L++L +P
Sbjct: 80 EGYEAHLDFLKKFWPGPLTVILRKKSEKIPLVVTAGLSTVAVRMPAHPVALKLIELFGNP 139
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+A SAN S PS + + ++ ++ID G + P STIVDL++E
Sbjct: 140 IAAPSANLSGRPSATNVQHVIEDFMGKVKLIIDAG--NTPFGLESTIVDLTKEK 191
>gi|409722842|ref|ZP_11270236.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus hamelinensis 100A6]
gi|448724584|ref|ZP_21707090.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus hamelinensis 100A6]
gi|445785412|gb|EMA36203.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus hamelinensis 100A6]
Length = 195
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 8/200 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + AA+ K G +V PT+T+YGL DA + A+ ++E+K R + P++ V+ +
Sbjct: 2 DARRIARAAESAKNGDLVVYPTETVYGLGADALSETAVERVFEVKGRPRDDPVSFGVASV 61
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
++ E + LPGPVT+V + L +V +RIPDH R LL
Sbjct: 62 ERAAEYTRPTEREVEFMEAFLPGPVTVVVEAGGAVPEALTAGRDRVGIRIPDHPVARDLL 121
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ PL TSAN S S ++E + + V+D G + E ST+VD+S
Sbjct: 122 REA-GPLTATSANRSGTGSARTVDEIDGSVRTACGAVLDVGELPGTE---STVVDVSAGT 177
Query: 212 VYSIVRKGVCYDKILKILHK 231
++ R+G D+I + +
Sbjct: 178 IH---RRGALADRIATWIER 194
>gi|395778566|ref|ZP_10459078.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella elizabethae
Re6043vi]
gi|423715122|ref|ZP_17689346.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella elizabethae F9251]
gi|395417774|gb|EJF84111.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella elizabethae
Re6043vi]
gi|395430606|gb|EJF96648.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella elizabethae F9251]
Length = 320
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 16/200 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VA+PT+T+YGLA DATN +A++ ++ KKR PL V+ I ++
Sbjct: 14 AIALLEQGKLVAVPTETVYGLAGDATNGRALSSIFSTKKRPQFNPLIAHVNGIEMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNP----NVTKVAVRIPDHKFLRQLLKL 154
+ +S +L+ PGP+T+V +++H +++P + +A+R PD +F +++
Sbjct: 74 EIDFLSRQLMEAFWPGPLTLVLPLKAQH---DIHPLTTAGLNTLAIRFPDSRFA-DIVQC 129
Query: 155 MDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEEN 211
PLA SAN+S S F L + +++DGG P R G STI+ + EN
Sbjct: 130 FGRPLAAPSANQSGRLSPTSAEAVFASLGESVPLILDGG----PTRIGLESTIIKVCGEN 185
Query: 212 VYSIVRKGVCYDKILKILHK 231
+Y + G+ DKI ++L K
Sbjct: 186 IYLLRPGGLATDKIEEVLGK 205
>gi|254796933|ref|YP_003081770.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str.
Illinois]
gi|254590181|gb|ACT69543.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str.
Illinois]
Length = 195
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 11/180 (6%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VV PT+T+Y LACDA+N +A+ +Y+IK+R++ K L + V+ I+ + +A +
Sbjct: 9 LRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNIKKNLPVMVAGISQLESFASFNE 68
Query: 104 VSFELLAELLPGPVTIVFNR--SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
L+ E PGPVT + R S HL KVAVR+PD K ++L+ + P+
Sbjct: 69 SQARLIKECCPGPVTFILKRKKSAHLRFRFP---EKVAVRVPDSKVALKILRGFNRPVFA 125
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
TS N S P+ ++ F ++ S + + I N G S+I+D+S + +VRKG
Sbjct: 126 TSVNLSGRPA---VSSFTQIGSYMKKRVSRIICDNRGVKGTASSIIDISGKRAV-LVRKG 181
>gi|409095082|ref|ZP_11215106.1| sua5 superfamily-like protein [Thermococcus zilligii AN1]
Length = 340
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA L++G +VA PT+T+YGL DA N A ++E K R + PL + ++E+ + K
Sbjct: 18 VAAGILRRGGLVAFPTETVYGLGADALNESATRRIFEAKGRPADNPLIVHIAEVEWLEKL 77
Query: 99 A-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + ++EL + PGP+TIV + + + VAVR+P H +L++L +
Sbjct: 78 AKEVPEKAWELAEKFWPGPLTIVLPARDTVPRTTTGGLDTVAVRMPAHPIALELIRLSNV 137
Query: 158 PLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S PS + + + ++ ++DGG P ST++DL+ E +
Sbjct: 138 PVAAPSANISGRPSPTSADHVIEDFYGKIDCIVDGG--ETPIGVESTVIDLTSEVPVLLR 195
Query: 217 RKGVCYDKILKILHK 231
G+ +++ K+L +
Sbjct: 196 PGGLPVEELSKVLGE 210
>gi|262165359|ref|ZP_06033096.1| YrdC family protein [Vibrio mimicus VM223]
gi|262025075|gb|EEY43743.1| YrdC family protein [Vibrio mimicus VM223]
Length = 329
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DA+ +A+ ++ K R N PL + I +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLIVHFGSAEQIAEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 85 TDVAPEAYQLAEAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|319406928|emb|CBI80565.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 320
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN KA+ ++ K R + PL + VS+I +
Sbjct: 14 AVAILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPLIVHVSDIVMAECYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+S L+ PGP+T+V H N+ + +A+R P F+ ++++
Sbjct: 74 KIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSPKGGFV-EVIRHFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S + S T ++ F L + + ++IDGG + G STI+ + +EN+Y
Sbjct: 133 PLAAPSANQSGKLSPTSALSVFTSLGTSVPLIIDGG----DSKIGLESTIIKICDENIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I K+ K
Sbjct: 189 LRPGGLAIEEIEKVAKK 205
>gi|15643615|ref|NP_228661.1| hypothetical protein TM0852 [Thermotoga maritima MSB8]
gi|403252593|ref|ZP_10918902.1| hypothetical protein EMP_02419 [Thermotoga sp. EMP]
gi|418044978|ref|ZP_12683074.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga maritima MSB8]
gi|4981386|gb|AAD35934.1|AE001752_1 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678060|gb|EHA61207.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga maritima MSB8]
gi|402812083|gb|EJX26563.1| hypothetical protein EMP_02419 [Thermotoga sp. EMP]
Length = 335
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 8/193 (4%)
Query: 25 MCSIVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M ++KV D K AA+ L+ G V+ PT+T+YG+ DA N +A ++++K+R
Sbjct: 1 MTRVLKVDPLFPDEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERP 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVA 139
+ PL + + + + A+ + + L + PGP+T++F +SE + + ++ VA
Sbjct: 61 ADNPLIVHIHSFKQLEEIAEGYEPHLDFLKKFWPGPLTVIFRKKSEKIPPVVTADLPTVA 120
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPE 198
VR+P H +L++L P+A SAN S PS + + ++ ++ID G P
Sbjct: 121 VRMPAHPVALKLIELFGHPIAAPSANISGRPSATNVKHVIEDFMGKVKLIIDAG--DTPF 178
Query: 199 RFGSTIVDLSEEN 211
STIVDL++E
Sbjct: 179 GLESTIVDLTKEK 191
>gi|448589416|ref|ZP_21649575.1| DNA binding protein, translation factor [Haloferax elongans ATCC
BAA-1513]
gi|445735844|gb|ELZ87392.1| DNA binding protein, translation factor [Haloferax elongans ATCC
BAA-1513]
Length = 202
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G V PT+T+YG+ DAT+ +A+ +++IK RD +KPL+ ++ +
Sbjct: 14 AAAAIRDGDAVVYPTETVYGMGADATSPEAVERVFDIKGRDRDKPLSAGFPDVDSALDYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V R + L L + +V VR+PDH+ +L + ++P+
Sbjct: 74 EVTDREEAFMRRFLPGPVTVVVERRDSLPDVLVSSRERVGVRVPDHELALELFRAAETPV 133
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++ V+DGG E ST+VD + ++ R+
Sbjct: 134 TATSANLSGAGSITNPSQLPDEIHDAVAFVLDGGTTPGTE---STVVDPGQGIIH---RR 187
Query: 219 GVCYDKI 225
G D I
Sbjct: 188 GAMADDI 194
>gi|320529371|ref|ZP_08030459.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399]
gi|320138337|gb|EFW30231.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399]
Length = 355
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ ++ G +VA PT+T+YGL + + A +Y K R + PL + I D+ A
Sbjct: 17 AAQMIRDGALVAFPTETVYGLGANGLDVAACARIYAAKGRPSDNPL---ILHIADLSMAA 73
Query: 100 DTHTV----SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
D + + LL PGP+T++ ++ H+ + ++ V VR PDH R L++
Sbjct: 74 DAARIVTPAAAHLLTAFAPGPITVILPKAAHVPDIVTGGLSTVGVRCPDHDIARALIRAA 133
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
P+A SAN S PS T L ++ ++DGG R+G STIVD +E+ +
Sbjct: 134 GVPIAAPSANTSGRPSPTTAAMVSDDLAGRIPCILDGGAC----RWGVESTIVDCTEDGI 189
Query: 213 YSIVRKGV 220
+++R G
Sbjct: 190 VTVLRPGA 197
>gi|258626302|ref|ZP_05721149.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258581354|gb|EEW06256.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 322
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DA+ +A+ ++ K R N PL + I +WA
Sbjct: 18 AAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLIVHFGSAEQIAEWA 77
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 78 TDVAPEAYQLAEAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 137
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 138 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 194
Query: 218 KG 219
G
Sbjct: 195 AG 196
>gi|350569219|ref|ZP_08937615.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium avidum ATCC
25577]
gi|348660037|gb|EGY76747.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium avidum ATCC
25577]
Length = 328
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA NS A+ L K+R + P + VS+ +P
Sbjct: 66 AADAIADGECIVLPTDTVYGIGADALNSLAVQRLLNAKERGRDMPPPVLVSDSVALPALC 125
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
V+ E LAE PG +T++ E L ++L +AVR+PD R+LL+ M P
Sbjct: 126 QHIPVAAEALAEKYWPGGLTLILRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 184
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A++SAN+S P+ L E +L ++V +D G P R G STI+D +
Sbjct: 185 MAVSSANKSGHPAALTAQEAANQLGVTVAVYLDAG----PSRVGEASTIIDFVSTTDGKV 240
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 241 VRQGALS---LEAIHE 253
>gi|261409693|ref|YP_003245934.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10]
gi|261286156|gb|ACX68127.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10]
Length = 365
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 9/185 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A Q L +G VA PT+T+YGL DA N++A+ ++ K R + PL + +SE+ +
Sbjct: 26 AGQVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPSDNPLIVHISELAQLDGLV 85
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ L+A PGP+++V + ++ + + VAVR+PDH+ L+
Sbjct: 86 QQVNETERALMASFWPGPLSLVLPVKPGAVSPRVTAGLDTVAVRMPDHRVALALISAAGC 145
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S PS TL + + L + V+DGG P G ST+V + E+ +
Sbjct: 146 PLAAPSANRSGRPSPTLASHVLEDLAGAIDGVLDGG----PAGVGVESTVVQVGEDGAVT 201
Query: 215 IVRKG 219
++R G
Sbjct: 202 VLRPG 206
>gi|57640883|ref|YP_183361.1| putative translation factor Sua5p-like protein [Thermococcus
kodakarensis KOD1]
gi|57159207|dbj|BAD85137.1| putative translation factor Sua5p homolog [Thermococcus
kodakarensis KOD1]
Length = 339
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 5/199 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K +AA+ + +G +VA PT+T+YGL DA N A+ ++E K R + PL I ++ I
Sbjct: 12 DEKKIKVAARLILEGKLVAFPTETVYGLGADALNEGAVRRIFEAKGRPADNPLIIHIASI 71
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
D+ K A +LLAE PGP+T+V + E + L + VAVR+P H L
Sbjct: 72 DDLEKVAREVPEKAKLLAERFWPGPLTLVLPKREEVPLVTTGGLDTVAVRMPAHPIALAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
++ +PLA SAN S +PS T + + ++ +IDGG ST+VDL+EE
Sbjct: 132 IR-ASTPLAAPSANISGKPSPTSAEHVIDDFYGKIEGIIDGG--ETWVGVESTVVDLTEE 188
Query: 211 NVYSIVRKGVCYDKILKIL 229
+ G+ +++ K++
Sbjct: 189 PPVLLRPGGIPLEELEKVI 207
>gi|433640057|ref|YP_007285817.1| Sua5/YciO/YrdC/YwlC family protein [Halovivax ruber XH-70]
gi|433291861|gb|AGB17684.1| Sua5/YciO/YrdC/YwlC family protein [Halovivax ruber XH-70]
Length = 194
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +V PT+T+YGL DA + AI ++E K RD +KPL++ V + +
Sbjct: 14 GELVVYPTETVYGLGADALDPSAIERVFEAKGRDRDKPLSMAVPSVPSALEHVRATDRER 73
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
+A LPGPVT++ R + L +V +R+PDH +L + +P+ TSAN
Sbjct: 74 RFMATFLPGPVTVLCTRRSSVPDVLTAGRDRVGIRVPDHPLALRLCERAGTPITATSANV 133
Query: 167 SNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKI 225
S PS +E + Q +VV+DGG E ST+VD++ + ++ R+G D I
Sbjct: 134 SGRPSVRRPDELDDSIREQAAVVLDGGETDGTE---STVVDVATDTIH---RRGARADDI 187
>gi|39996696|ref|NP_952647.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
sulfurreducens PCA]
gi|409912117|ref|YP_006890582.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
sulfurreducens KN400]
gi|39983577|gb|AAR34970.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
sulfurreducens PCA]
gi|298505707|gb|ADI84430.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
sulfurreducens KN400]
Length = 203
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 33 DPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+A L++ A+ L +G V+A PTDT YG+ C + K I +Y +K+R+ KP + S
Sbjct: 9 NPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICS 68
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
E++++ ++A ++++L LPGP T V + + + L V +RIPD++
Sbjct: 69 ELSEVARYAKVSNYAYKILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRIPDNRICIA 128
Query: 151 LLKLMDSPLALTSANESN-EPSTLCINEFQKLWSQLSVVIDGG 192
L+K + P+ TSAN S EP + + L QL +V+DGG
Sbjct: 129 LVKELGHPIVTTSANLSGEEPIGDPLEVERTLGKQLDLVVDGG 171
>gi|333924795|ref|YP_004498375.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333750356|gb|AEF95463.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 354
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +K G +VA PT+T+YGL + + A+ +Y K R + PL + V++ A
Sbjct: 24 AAQIIKNGGLVAFPTETVYGLGANGLDGTAVAGIYRAKGRPSDNPLILHVADFA----MA 79
Query: 100 DTHTVSFELLAELL-----PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
+T + +A +L PGP+T+V R+ H+ ++ + V +R+P H L+K
Sbjct: 80 ETLSAGLPPVAGMLMDKFWPGPLTLVVPRANHIPGQVTGGLDTVGIRMPSHPVALALIKA 139
Query: 155 MDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG--STIVDLSEEN 211
P+A SAN S PS Q L ++ ++DGG P G ST++D+S E
Sbjct: 140 AGVPIAAPSANRSGRPSPTRAAHVQADLQGRIDAILDGG----PTGVGLESTVLDVSGEQ 195
Query: 212 VYSIVRKGVCYDKILKILHK 231
+ GV Y+++ +L +
Sbjct: 196 PVILRPGGVTYEQLADLLPR 215
>gi|387790479|ref|YP_006255544.1| Sua5/YciO/YrdC/YwlC family protein [Solitalea canadensis DSM 3403]
gi|379653312|gb|AFD06368.1| Sua5/YciO/YrdC/YwlC family protein [Solitalea canadensis DSM 3403]
Length = 204
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 13/194 (6%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP--LAIC-- 88
+P+A +CLKKG V+ PTDT+YGL CD TN KAI + +I+ K IC
Sbjct: 11 NPRAIEQVVECLKKGGVIIYPTDTVYGLGCDITNQKAIERVCQIRGLKPEKANLSFICYD 70
Query: 89 VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFL 148
+S +++ K D T F +L LPGP T +FN S + LN V +R+PD+
Sbjct: 71 LSHLSNYTKPVD--TTLFRVLKSHLPGPFTFIFNASGQVPKLLNSKKKTVGIRVPDNNIA 128
Query: 149 RQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIV 205
R+++ + +P+ TS ++ +E + ++K + +VIDGG N ST+V
Sbjct: 129 REIVNQLGNPIVSTSIHDDDEILEYSTDPELIYEKYQDLVDIVIDGGYGGNE---ASTVV 185
Query: 206 DLSEENVYSIVRKG 219
D ++ + IVR+G
Sbjct: 186 DCTDGEM-EIVRQG 198
>gi|448417446|ref|ZP_21579382.1| translation factor sua5 [Halosarcina pallida JCM 14848]
gi|445677934|gb|ELZ30430.1| translation factor sua5 [Halosarcina pallida JCM 14848]
Length = 207
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 53 PTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL 112
PT+T+YGL DAT++ A+ ++E+K RD KPL++ V ++ ++A +
Sbjct: 24 PTETVYGLGADATDADAVERVFELKGRDRTKPLSVGVPDVAAAREYARPTPFETRFMERF 83
Query: 113 LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPST 172
LPGPVT+V R L L +V VR+PD++ + + P+ TSAN S PS
Sbjct: 84 LPGPVTVVVERGPDLPDALTAGRARVGVRVPDYETTLEFYRRAGRPVTATSANRSGAPSI 143
Query: 173 LCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKIL 229
E L ++ V+D G P ST+VD NV I R+G D++ L
Sbjct: 144 RTPAELDPALRKRVGAVLDAG--ETPGGTESTVVDPG-RNV--IHRRGAMADEVAAWL 196
>gi|373123670|ref|ZP_09537514.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
21_3]
gi|422328439|ref|ZP_16409465.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
6_1_45]
gi|371660240|gb|EHO25493.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
6_1_45]
gi|371660365|gb|EHO25616.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
21_3]
Length = 204
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 6/200 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K A+ LK G VVA PTDT++GL N +A+ L E K R NKP+ V+++
Sbjct: 7 DKKDVKEVAELLKNGQVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPIPTMVADV 66
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ A + L +PG T++ + E L + V +R+PD F+ +L+
Sbjct: 67 EQMKCIAQMPAEAVALADAFMPGAFTMILKKQETLPDYVTNGFPTVGIRMPDDPFVLRLI 126
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE-RFGSTIVDLSEEN 211
K PL +TSAN S E + + +++ QL ID ++ + + STIVD+SEE
Sbjct: 127 KECGKPLLVTSANRSGEETGV---RDEQVLEQLDGRIDAIVLGEAKGKLASTIVDMSEEE 183
Query: 212 VYSIVRKG-VCYDKILKILH 230
IVR+G + D I K+LH
Sbjct: 184 -PRIVREGPISADDIKKVLH 202
>gi|354607210|ref|ZP_09025180.1| hypothetical protein HMPREF1003_01747 [Propionibacterium sp.
5_U_42AFAA]
gi|353557325|gb|EHC26694.1| hypothetical protein HMPREF1003_01747 [Propionibacterium sp.
5_U_42AFAA]
Length = 287
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 61 AADAIADGVCIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 120
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 121 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 179
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 180 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 235
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 236 VRQGALS---LEAIHE 248
>gi|313899365|ref|ZP_07832876.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2]
gi|312955818|gb|EFR37475.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2]
Length = 214
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 6/200 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K A+ LK G VVA PTDT++GL N +A+ L E K R NKP+ V+++
Sbjct: 17 DKKDVKEVAELLKNGQVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPIPTMVADV 76
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ A + L +PG T++ + E L + V +R+PD F+ +L+
Sbjct: 77 EQMKCIAQMPAEAVALADAFMPGAFTMILKKQETLPDYVTNGFPTVGIRMPDDPFVLRLI 136
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE-RFGSTIVDLSEEN 211
K PL +TSAN S E + + +++ QL ID ++ + + STIVD+SEE
Sbjct: 137 KECGKPLLVTSANRSGEETGV---RDEQVLEQLDGRIDAIVLGEAKGKLASTIVDMSEEE 193
Query: 212 VYSIVRKG-VCYDKILKILH 230
IVR+G + D I K+LH
Sbjct: 194 -PRIVREGPISADDIKKVLH 212
>gi|417931747|ref|ZP_12575112.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
SK182B-JCVI]
gi|340775690|gb|EGR97743.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
SK182B-JCVI]
Length = 292
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA NS A+ L K+R + P + VS+ +P
Sbjct: 66 AADAIADGECIVLPTDTVYGIGADALNSLAVQRLLNAKERGRDMPPPVLVSDSVALPALC 125
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 126 EHIPAAAMALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 184
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D + +
Sbjct: 185 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGEPSTIIDFVSTSDGKV 240
Query: 216 VRKGV 220
VR+G
Sbjct: 241 VRQGA 245
>gi|448346863|ref|ZP_21535743.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema altunense JCM 12890]
gi|445631522|gb|ELY84752.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema altunense JCM 12890]
Length = 195
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL A +S+ + ++E+K RD KPL+ V + ++
Sbjct: 7 AADAIESGALVVYPTETVYGLGGAALDSETVERVFEVKGRDRTKPLSFAVPSVPSALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R + EL +V VRIPD+ L + +P+
Sbjct: 67 RATDRERRFMASFLPGPVTVLCRRRAAVPDELTAGRERVGVRIPDNDLALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S +++ ++ +VV+DGG ST+VD+S ++ R+
Sbjct: 127 TATSANVSGRESARRLDDLDPEIREAAAVVLDGGRTDGGTE--STVVDVSSGTIH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D+I L +
Sbjct: 182 GAQADEIEAWLEGH 195
>gi|377809405|ref|YP_005004626.1| hypothetical protein PECL_658 [Pediococcus claussenii ATCC BAA-344]
gi|361056146|gb|AEV94950.1| hypothetical protein PECL_658 [Pediococcus claussenii ATCC BAA-344]
Length = 338
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 118/211 (55%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +K+G +VA PT+T+YGL DATN +A+N ++E K R + PL + V++I + + A
Sbjct: 13 AAKAIKEGKLVAFPTETVYGLGADATNVQAVNQVFEAKGRPSDNPLIVHVADIKTVEELA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + ++ L+ PGP+TI+ + L+ + +T A R PD+K L+K P
Sbjct: 73 EINKNAYNLMKRFWPGPLTIILPIKPGSLDKVVTGGLTTAAFRNPDNKETIDLIKAAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS T + L +++ V+D G R G ST++D+S + + +I
Sbjct: 133 LVGPSANTSGKPSPTKPEHVLHDLDGKIAGVLDDG----ETRIGVESTVIDVSTK-IPAI 187
Query: 216 VRKG-VCYDKILKILHK----YHLVEKNTFP 241
+R G V ++I ++ + +H V KN P
Sbjct: 188 LRPGAVTVEQIESVIGEIQTDHHKVGKNETP 218
>gi|83945388|ref|ZP_00957736.1| Sua5/YciO/YrdC family protein [Oceanicaulis sp. HTCC2633]
gi|83851222|gb|EAP89079.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633]
Length = 327
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Query: 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
+P I+ TDP A AA+ LK G VALPT+T+YGLACDATN+ A+ +YE K R
Sbjct: 5 IPPSDTPILSATDPAALEEAARLLKAGGCVALPTETVYGLACDATNADAVAGVYEAKGRP 64
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKV 138
PL V + D +L PGP+T+V ++ + + +
Sbjct: 65 SFNPLICHVDTVERARALIDLDETGEQLADAFWPGPLTLVASKRAPSPVSDLAAAGLDSL 124
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNP 197
AVR+P + LR L+ +D+PLA SAN S S + L ++ +++DGG P
Sbjct: 125 AVRLPRSEALRALVSRLDAPLAAPSANASGTISPTTAQHVKDSLNGRIHLILDGGAC--P 182
Query: 198 ERFGSTIVDLSEENVYSIVRKG 219
STIV L E +++R G
Sbjct: 183 VGVESTIVSLLEPGRPTLLRPG 204
>gi|424807974|ref|ZP_18233376.1| hypothetical protein SX4_1891 [Vibrio mimicus SX-4]
gi|342324511|gb|EGU20292.1| hypothetical protein SX4_1891 [Vibrio mimicus SX-4]
Length = 251
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DA+ +A+ ++ K R N PL + I +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLIVHFGSAEQIAEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 85 TDVVPEAYQLAEAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|83591211|ref|YP_431220.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073]
gi|83574125|gb|ABC20677.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073]
Length = 352
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA+ L +G VVA PT+T+YGL +A + +A+ ++ K R + PL + ++ D+
Sbjct: 20 LAAKILARGGVVAFPTETVYGLGANALDGRAVRRIFRAKGRPADNPLIVHIASFQDVQDL 79
Query: 99 -ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + L+ PGP+T++ RS+ + E+ + V +R+P H + L++
Sbjct: 80 VAYLPPRATLLMQRFWPGPLTLIMPRSDLIPDEVTAGLDTVGLRMPSHPVAQALIRATRL 139
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + + L ++ VIDGG P G ST++DL+ V +
Sbjct: 140 PIAAPSANTSGRPSPTTGQHVLRDLRGKIDAVIDGG----PSTVGVESTVLDLTSP-VPT 194
Query: 215 IVR-KGVCYDKILKILHK 231
I+R G+ Y+++ +L K
Sbjct: 195 ILRPGGITYEELQAVLGK 212
>gi|375089108|ref|ZP_09735444.1| Sua5/YciO/YrdC/YwlC family protein [Dolosigranulum pigrum ATCC
51524]
gi|374560909|gb|EHR32262.1| Sua5/YciO/YrdC/YwlC family protein [Dolosigranulum pigrum ATCC
51524]
Length = 331
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L+ VVA PT+T+YGL DAT+S+AI +Y+ K R + PL + +++
Sbjct: 14 AAQLLQSEEVVAFPTETVYGLGADATSSQAIQGIYQAKGRPSDNPLIVHIAQRSQLMELT 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T +P A +L+ + PGP+TI+ N + + + E+ + + +R+PDH +L
Sbjct: 74 TYVPPKAQ------QLMDQFWPGPLTIILNVKRQAVAPEVTAGLATIGIRMPDHPLALEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
++ + P+A S+N S +PS T + L +++ V+DGG ST++DL+ E
Sbjct: 128 IRQVGRPIAAPSSNTSGKPSPTTAQHVMDDLAGKIAAVVDGG--ETGVGLESTVIDLTSE 185
Query: 211 NVYSIVRKG 219
V +I+R G
Sbjct: 186 -VPTILRPG 193
>gi|423711156|ref|ZP_17685476.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella washoensis Sb944nv]
gi|395415070|gb|EJF81505.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella washoensis Sb944nv]
Length = 320
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +A+ ++ KKR PL + VS I ++
Sbjct: 14 AVAFLERGKLVALPTETVYGLAGDATNGRAVASIFSAKKRPQFNPLIVHVSSIIMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T+V H N+ + +AVR PD F ++++
Sbjct: 74 EIDRLSRRLMEVFWPGPLTLVLPLKTHHNIHPLATSGLNTLAVRFPDSGFA-EVVRCFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T F L + +++DGG + G STI+ + +E+VY
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVFASLGLSVPLILDGGF----SKIGLESTIIKVCDESVYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I K++ K
Sbjct: 189 LRPGGLAAEEIEKVIGK 205
>gi|73668440|ref|YP_304455.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro]
gi|72395602|gb|AAZ69875.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro]
Length = 367
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 107/201 (53%), Gaps = 4/201 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A+ +K+G VA PT+T+YGL D N +A+ ++E KKR PL++ V D+ K A
Sbjct: 28 ASAIIKRGGTVAFPTETVYGLGADGLNPEAVMKIFEAKKRPPGNPLSLLVHSREDVEKVA 87
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +F L+ PGP+TI+ +++ + + + + VR+PDH+ L+K +P
Sbjct: 88 RNIPESAFRLMNAFWPGPLTIILEKNDIVPDITSGRLKSIGVRMPDHRVPLDLIKRAGTP 147
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S +PS +L + L ++ ++DGG + ST++D++ E +
Sbjct: 148 LAAPSANLSGKPSPSLAAHVISDLTGRIDAILDGGEAAI--GLESTVIDMTVEPPVVLRP 205
Query: 218 KGVCYDKILKILHKYHLVEKN 238
V ++++ I+ K KN
Sbjct: 206 GAVSFEELESIIGKVRPGYKN 226
>gi|383937144|ref|ZP_09990554.1| sua5 YciO YrdC YwlC family protein [Rheinheimera nanhaiensis
E407-8]
gi|383701807|dbj|GAB60645.1| sua5 YciO YrdC YwlC family protein [Rheinheimera nanhaiensis
E407-8]
Length = 323
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
AQ LK+G +VA+PT+T+YGLA DATN A++ ++ K R + PL + +++ T +P WA
Sbjct: 18 AQLLKQGQLVAVPTETVYGLAADATNPAAVSAIFSAKGRPAHHPLIVHLADKTQLPHWAS 77
Query: 101 T-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ ++ L PGP+T++ +++H++ + ++ V +R+P H L LL+ L
Sbjct: 78 RISSAAYALAEAFWPGPLTLLLPKADHVSPVVTGGLSSVGLRVPAHPVLLALLQQQQLAL 137
Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
A SAN + S + L ++S V+DGG P FG STIVDL+ V +IV
Sbjct: 138 AAPSANLYKKLSPTSAQQVMAGLNGRISAVLDGG----PCAFGLESTIVDLT-GTVPTIV 192
Query: 217 RKG 219
R G
Sbjct: 193 RAG 195
>gi|163848701|ref|YP_001636745.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus
J-10-fl]
gi|222526643|ref|YP_002571114.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl]
gi|163669990|gb|ABY36356.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus
J-10-fl]
gi|222450522|gb|ACM54788.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl]
Length = 351
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 4/210 (1%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
T P A +A + L++G +VA PT+T+YGL A + +A+ ++ K R N PL + ++
Sbjct: 8 TSPAAIAMAGELLRRGELVAFPTETVYGLGGHALDERAVAAIFTAKGRPANDPLIVHITA 67
Query: 92 ITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
TD+P A T ++ L A PGP+T++ R + L + VAVR+P H ++
Sbjct: 68 ATDLPLVAATVPPLAGRLAAACWPGPLTLIVPRHPRVPLTVTAGRETVAVRVPSHPIAQE 127
Query: 151 LLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE 209
LL+ P+A SAN S T + L +++ VIDGG + P ST++D +
Sbjct: 128 LLRAAGVPVAAPSANRFGHTSPTTADHVLADLDGRIAAVIDGG--ATPIGIESTVLDCTT 185
Query: 210 ENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + G+ + + ++ + L + T
Sbjct: 186 DPPTLLRPGGISLETLTDLIGEVQLRSQPT 215
>gi|422439335|ref|ZP_16516158.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL037PA3]
gi|422470821|ref|ZP_16547321.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL037PA2]
gi|313837663|gb|EFS75377.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL037PA2]
gi|314972603|gb|EFT16700.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL037PA3]
Length = 295
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 28 IVKVTDPKA---ALL-AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
I+ V DP A AL+ AA + G + LPTDT+YG+ DA N A+ L K+R +
Sbjct: 53 ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
P + VS+ +P + LAE PG +T++ E L ++L +AVR+
Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMDLGETNGTLAVRV 172
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG 201
PD R+LL+ M P+A++SAN+S P+ L E +L +++V +D G P R G
Sbjct: 173 PDQDQTRELLR-MTGPMAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVG 227
Query: 202 --STIVDLSEENVYSIVRKGVCYDKILKILHK 231
STI+D +VR+G L+ +H+
Sbjct: 228 ESSTIIDFVSTADGKVVRQGALS---LEAIHE 256
>gi|395204880|ref|ZP_10395820.1| SUA5 related protein [Propionibacterium humerusii P08]
gi|422574350|ref|ZP_16649904.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL044PA1]
gi|314927456|gb|EFS91287.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL044PA1]
gi|328907542|gb|EGG27308.1| SUA5 related protein [Propionibacterium humerusii P08]
Length = 295
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 28 IVKVTDPKA---ALL-AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
I+ V DP A AL+ AA + G + LPTDT+YG+ DA N A+ L K+R +
Sbjct: 53 ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
P + VS+ +P + LAE PG +T++ E L ++L +AVR+
Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMDLGETNGTLAVRV 172
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG 201
PD R+LL+ M P+A++SAN+S P+ L E +L +++V +D G P R G
Sbjct: 173 PDQDQTRELLR-MTGPMAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVG 227
Query: 202 --STIVDLSEENVYSIVRKGVCYDKILKILHK 231
STI+D +VR+G L+ +H+
Sbjct: 228 ESSTIIDFVSTADGKVVRQGALS---LEAIHE 256
>gi|258621755|ref|ZP_05716786.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258585986|gb|EEW10704.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 329
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DA+ +A+ ++ K R N PL + I +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLIVHFGSAEQIAEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 85 TDVVPEAYQLAEAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|399576011|ref|ZP_10769768.1| hypothetical protein HSB1_18070 [Halogranum salarium B-1]
gi|399238722|gb|EJN59649.1| hypothetical protein HSB1_18070 [Halogranum salarium B-1]
Length = 194
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G V PT+T+YGL DA ++ A+ ++E+K R ++ PL++ V ++ ++
Sbjct: 8 AADAVARGEAVVYPTETVYGLGADALDADAVEGVFELKGRSLDNPLSLGVPDVDTALQYT 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E LPGPVT+V R + L ++V +RIPDH +LL PL
Sbjct: 68 APTPTEEAFMREFLPGPVTVVVERRTMVPDVLTSGKSRVGIRIPDHDVALELLGET-GPL 126
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S PS + + +++ + V+DGG E ST+VD ++ R+
Sbjct: 127 TATSANVSGSPSVTRLEDLDERIRTGAGAVVDGGETPGTE---STVVDPGAGVIH---RR 180
Query: 219 GVCYDKI 225
G D I
Sbjct: 181 GARADDI 187
>gi|291543207|emb|CBL16316.1| translation factor SUA5 [Ruminococcus champanellensis 18P13]
Length = 341
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G VV +PT+T+YGLA DATN A+ ++ K R ++ PL + +S + ++ +
Sbjct: 16 AAGLIREGQVVGMPTETVYGLAADATNRDAVAKVFAAKGRPMDNPLIVHISSMEELEQAV 75
Query: 100 DTHTVSFELLAELL----PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
EL+A L PGP+T++ +SE + +E + + V VR+P H + L+++
Sbjct: 76 SRVP---ELVASLADAFWPGPLTMIMPKSELIPMETSGGLDTVGVRMPSHPVAQALIRIA 132
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
P+A SAN S PS T + + ++ ++DGG S ST+V ++
Sbjct: 133 GVPIAAPSANRSGYPSPTTAQHVLADMQGRIPAILDGGACSC--GLESTVVAFDDDRTVR 190
Query: 215 IVRKGVCYDKIL 226
I+R G ++L
Sbjct: 191 ILRPGFVTKEML 202
>gi|319403916|emb|CBI77504.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 320
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A ++G +VALPT+T+YGLA DATN KA+ ++ K R + PL + VS+I +
Sbjct: 14 AVAIFQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPLIVHVSDIVMAECYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+S L+ PGP+T+V H N+ + +A+R P F ++++
Sbjct: 74 KIDLLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSPKGGF-AEVIRHFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S + S T ++ F L + + ++IDGG + G STI+ + +EN+Y
Sbjct: 133 PLAAPSANQSGKLSPTSALSVFTSLGTSVPLIIDGGA----SKIGIESTIIKICDENIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I K+ K
Sbjct: 189 LRPGGLAIEEIEKVAKK 205
>gi|448354332|ref|ZP_21543091.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba hulunbeirensis JCM
10989]
gi|445638213|gb|ELY91352.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba hulunbeirensis JCM
10989]
Length = 196
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P + AA ++ G +V PT+T+YGL DA + A+ ++E+K RD +KP+++ V +
Sbjct: 3 PTSIDRAADAIRDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLAVPSVP 62
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
+ T +A LPGPVT++ R E + L +V +R+PD L +
Sbjct: 63 AAFDYVRTTERERRFMATFLPGPVTVLCRRLESVPDVLTAGEDRVGIRVPDQPTALALCE 122
Query: 154 LMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+P+ TSAN S S + E L ++ V+DGG E ST+VD S E +
Sbjct: 123 RAGTPITATSANVSGTGSVRRLAELDDDLRESVATVLDGGETPGTE---STVVDPSSETI 179
Query: 213 YSIVRKGVCYDKI 225
+ R+G D+I
Sbjct: 180 H---RRGALADEI 189
>gi|21227350|ref|NP_633272.1| SUA5 protein [Methanosarcina mazei Go1]
gi|20905707|gb|AAM30944.1| SUA5 protein [Methanosarcina mazei Go1]
Length = 364
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 4/194 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++KG VA PT+T+YGL D N + ++E K+R PL++ V DI K A
Sbjct: 28 AAEIIRKGGTVAFPTETVYGLGADGLNPDTVLKIFEAKERPPGNPLSLLVHSREDIKKVA 87
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + L+ PGP+TIV + + + + N+ + +R+PDH+ +L+K +P
Sbjct: 88 KNIPEKALLLMDTFWPGPLTIVLEKKDTVPEITSGNLPTIGLRMPDHRIPLELIKRAGTP 147
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S +PS +L I+ L ++ VIDGG ST+VDL+ E +
Sbjct: 148 LAAPSANLSGKPSPSLAIHVLADLAGRIDAVIDGG--GTAIGLESTVVDLTVEPPVVLRI 205
Query: 218 KGVCYDKILKILHK 231
V ++ K++ K
Sbjct: 206 GAVGIGELEKVIGK 219
>gi|167629001|ref|YP_001679500.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum
Ice1]
gi|167591741|gb|ABZ83489.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum
Ice1]
Length = 422
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 17/198 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA CL+ G +VA PT+T+YGL DA ++A+ ++ K R + PL + +++ D+ +
Sbjct: 26 AAACLQAGGLVAFPTETVYGLGADALQAEAVAAIFTAKGRPSDNPLIVHIADRDDVARL- 84
Query: 100 DTHTVSFELLAELL-----PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
TV F LA L PGP+T+V S + + + VAVR+P H R L+
Sbjct: 85 ---TVGFPALARRLAERFWPGPLTLVLPASPQIPAVVTAGLATVAVRMPSHPVARALIGE 141
Query: 155 MDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEEN 211
+P+A SAN S PS T + ++ L ++ ++DGG G ST+VD + +
Sbjct: 142 AGTPVAAPSANRSGRPSPTTAAHVWEDLGGRIDGIVDGGDCD----LGLESTVVDAT-GD 196
Query: 212 VYSIVRKGVCYDKILKIL 229
V I+R G ++++ L
Sbjct: 197 VAVILRPGGVTREMIEAL 214
>gi|395780224|ref|ZP_10460691.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella washoensis 085-0475]
gi|395419491|gb|EJF85791.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella washoensis 085-0475]
Length = 320
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 10/193 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L++G +VALPT+T+YGLA DATN +A+ ++ KKR PL + VS I ++ +
Sbjct: 18 LERGKLVALPTETVYGLAGDATNGRAVASIFSAKKRPQFNPLIVHVSSIIMAERYVEIDR 77
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+S L+ PGP+T+V H N+ + +AVR PD F ++++ PLA
Sbjct: 78 LSRRLMEVFWPGPLTLVLPLKTHHNIHPLATSGLNTLAVRFPDSGFA-EVVRCFGRPLAA 136
Query: 162 TSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRK 218
SAN+S S T F L + +++DGG + G STI+ + +E+VY +
Sbjct: 137 PSANQSGRLSPTSAEAVFASLGLSVPLILDGGF----SKIGLESTIIKVCDESVYLLRPG 192
Query: 219 GVCYDKILKILHK 231
G+ ++I K++ K
Sbjct: 193 GLAAEEIEKVIGK 205
>gi|262171882|ref|ZP_06039560.1| YrdC family protein [Vibrio mimicus MB-451]
gi|261892958|gb|EEY38944.1| YrdC family protein [Vibrio mimicus MB-451]
Length = 322
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DA+ +A+ ++ K R N PL + I +WA
Sbjct: 18 AAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLIVHFGSAEQIAEWA 77
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 78 TDVVPEAYQLAEAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 137
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 138 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 194
Query: 218 KG 219
G
Sbjct: 195 AG 196
>gi|449147138|ref|ZP_21777878.1| hypothetical protein D908_20383 [Vibrio mimicus CAIM 602]
gi|449077246|gb|EMB48240.1| hypothetical protein D908_20383 [Vibrio mimicus CAIM 602]
Length = 329
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DA+ +A+ ++ K R N PL + I +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLIVHFGSAEQIAEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 85 TDVVPEAYQLAEAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|448357318|ref|ZP_21546022.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba chahannaoensis JCM
10990]
gi|445649337|gb|ELZ02276.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba chahannaoensis JCM
10990]
Length = 194
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL DA + A+ ++E+K RD +KP+++ V + +
Sbjct: 7 AADAIRDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLGVPSVPAAFDYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T + +A LPGPVT++ R E++ L +V +R+PD L + +P+
Sbjct: 67 RTTERERQFMATFLPGPVTVLCRRLENVPDVLTAGEDRVGIRVPDQPTALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + + L + ++ V+DGG E ST+VD S E ++ R+
Sbjct: 127 TATSANVSGTGSVRRLADLDDDLRASVATVLDGGETPGTE---STVVDPSSETIH---RR 180
Query: 219 GVCYDKI 225
G D+I
Sbjct: 181 GALADEI 187
>gi|323702620|ref|ZP_08114282.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans
DSM 574]
gi|323532439|gb|EGB22316.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans
DSM 574]
Length = 354
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AAQ +K G +VA PT+T+YGL + + A+ +Y K R + PL + V++
Sbjct: 24 AAQIIKNGGLVAFPTETVYGLGANGLDGTAVAGIYRAKGRPSDNPLILHVADFAMAEALS 83
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A V+ L+ + PGP+T+V R+ H+ ++ + V +R+P H L+K P
Sbjct: 84 AGLPPVAGMLMDKFWPGPLTLVVPRANHIPGQVTGGLDTVGIRMPSHPVALALIKAAGVP 143
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS Q L ++ ++DGG P G ST++D+S E +
Sbjct: 144 IAAPSANRSGRPSPTRAAHVQADLQGRIDAILDGG----PTGVGLESTVLDVSGEQPVIL 199
Query: 216 VRKGVCYDKILKILHK 231
GV Y+++ +L +
Sbjct: 200 RPGGVTYEQLADLLPR 215
>gi|422465838|ref|ZP_16542414.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA4]
gi|422469748|ref|ZP_16546269.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA3]
gi|314981453|gb|EFT25547.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA3]
gi|315092117|gb|EFT64093.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA4]
Length = 290
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|326792742|ref|YP_004310563.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM
5427]
gi|326543506|gb|ADZ85365.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM
5427]
Length = 344
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 19/198 (9%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+TD A L AA L++G +VA PT+T+YGL +A N A+ +Y+ K R + PL + ++
Sbjct: 6 ITDTTALLEAANILQQGGLVASPTETVYGLCANALNENAVKNIYKAKGRPSDNPLIVHIA 65
Query: 91 E-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIP 143
+ + ++P A T L+ PGP+T++F S + + + VA+R P
Sbjct: 66 DLEMLSPLVEEVPPMART------LMEHFWPGPLTLIFKASSLVPKVVTGGLDTVAIRFP 119
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG-- 201
H ++QL+K PLA SAN S +PS ++ L ID I+ + ++G
Sbjct: 120 SHPIIQQLIKASGLPLAAPSANTSGKPSP---TNASRVIEDLEGKIDAIIVGDSSKYGVE 176
Query: 202 STIVDLSEENVYSIVRKG 219
ST+VD + E V +I+R G
Sbjct: 177 STVVDTTGE-VATILRPG 193
>gi|375083514|ref|ZP_09730533.1| Sua5 superfamily-related protein [Thermococcus litoralis DSM 5473]
gi|375083979|ref|ZP_09730991.1| Sua5 superfamily-related protein [Thermococcus litoralis DSM 5473]
gi|374741406|gb|EHR77832.1| Sua5 superfamily-related protein [Thermococcus litoralis DSM 5473]
gi|374741707|gb|EHR78126.1| Sua5 superfamily-related protein [Thermococcus litoralis DSM 5473]
Length = 341
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 8/197 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ +++G +VA PT+T+YGL DA N A+ ++E K R + PL I ++E + +
Sbjct: 18 IAARFIREGKLVAFPTETVYGLGADALNENAVKRIFEAKGRPPDNPLIIHIAEFDQVYEL 77
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A ++LAE PGP+TIV + + + + VA+R+P H+ L+K
Sbjct: 78 AREVPEKAKMLAEKFWPGPLTIVLPKGDKVPYATTGGLETVAIRMPAHEIALALIKTSKR 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS TL + + ++ +IDGG + G ST++DL+ E
Sbjct: 138 PIAAPSANISGKPSPTLAEHVADDFYGRIECIIDGG----ETKIGVESTVIDLTTEPPML 193
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I +++ K
Sbjct: 194 LRPGGLPLEEIERVIGK 210
>gi|162457645|ref|YP_001620012.1| translation factor [Sorangium cellulosum So ce56]
gi|161168227|emb|CAN99532.1| Putative translation factor [Sorangium cellulosum So ce56]
Length = 201
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 4/187 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
+P+ A ++KG V+ PTDT+YG CD N AI +Y+IK NK LA ++
Sbjct: 11 EPRKIARAIDLIQKGEVIGYPTDTVYGFGCDLMNKAAIERVYQIKGMRQNKNLAFICPDL 70
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+DI ++A ++ +L LPGP T + + + ++ V +R+P+H L+
Sbjct: 71 SDIARYAIVENQTYRILKRYLPGPYTFILPATREVPKYVHLKQKTVGIRVPNHPVALALV 130
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ + PL T+A E + E + L++V+D G + +T++DLS+ V
Sbjct: 131 RALGRPLISTTAAPPGEDPIIDPGEIDDRFPGLALVLDAGTGGS---VPTTVIDLSQGEV 187
Query: 213 YSIVRKG 219
IVR+G
Sbjct: 188 -QIVREG 193
>gi|268610025|ref|ZP_06143752.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus flavefaciens FD-1]
Length = 337
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 112/203 (55%), Gaps = 9/203 (4%)
Query: 29 VKVTDPKAALL-AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
V ++D +A LL AA+ +K G +V +PT+T+YGL DA+N A+ ++ K R + PL +
Sbjct: 4 VLLSDSEADLLKAAKLIKDGNIVGIPTETVYGLGADASNEAAVRNIFAAKGRPADNPLIV 63
Query: 88 CVSEITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
+++ + K+ + +++ L PGP+T+V +++ + + + + V +R+P H
Sbjct: 64 HLADFSHAVKYTSSIPQLAYRLAERFCPGPLTMVLPKNDSIPMVTSGGLDTVGIRVPSHP 123
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
+ ++++L P+A SAN S PS T + + +++ ++DGG FG ST
Sbjct: 124 VMHRIIELSGCPIAAPSANTSGYPSPTSAAHVMNDMNGKVAAIVDGG----ESEFGVEST 179
Query: 204 IVDLSEENVYSIVRKGVCYDKIL 226
++ + E+ I+R G ++L
Sbjct: 180 VIAIEGESTVRILRPGCITREML 202
>gi|304438487|ref|ZP_07398427.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368570|gb|EFM22255.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 350
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 15/213 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +VA PT+T+YGL + ++ A +YE K R + PL + +++++ + + A
Sbjct: 17 AAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLILHIADLSMLHEAA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D + LL PGP+T++ ++ H+ + + V VR P H R+L++ P
Sbjct: 77 EDVPPAAAHLLTAFAPGPITVIVPKAAHIPPLVTGGLATVGVRCPAHDVARRLIRAAGMP 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + ++ +++DGG S +G STIVD +EE +I
Sbjct: 137 IAAPSANISGRPSPTTAAMTAADMMGRIPLILDGGSCS----WGVESTIVDCTEEGCITI 192
Query: 216 VRKGVCYDKI-------LKILHKYHLVEKNTFP 241
+R G ++ L + LV +T P
Sbjct: 193 LRPGAVTPEMISAELPHLTVRMDAALVSADTAP 225
>gi|395790234|ref|ZP_10469728.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella taylorii 8TBB]
gi|395426885|gb|EJF93003.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella taylorii 8TBB]
Length = 320
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VALPT+T+YGLA DATN +A++ ++ K+R PL + VS I+ ++
Sbjct: 14 AVALLKQGKLVALPTETVYGLAGDATNGRAVSSIFFTKRRPQFNPLIVHVSSISMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T+V + N+ + +AVR PD F ++++
Sbjct: 74 EIDFLSRRLMEVFWPGPLTLVLSLKAQHNIHPLTTSGLNTLAVRFPDSHFA-EVVQCFGQ 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T F L + +++DGG P + G STI+ + E++Y
Sbjct: 133 PLAAPSANQSGCLSPTSAEAVFASLGGAVPLILDGG----PSKIGLESTIIKVCNEDIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I K++ K
Sbjct: 189 LRPGGLSSEEIEKVVGK 205
>gi|386024196|ref|YP_005942501.1| SUA5 related protein [Propionibacterium acnes 266]
gi|332675654|gb|AEE72470.1| SUA5 related protein [Propionibacterium acnes 266]
Length = 280
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 54 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 113
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 114 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 172
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 173 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 228
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 229 VRQGALS---LEAIHE 241
>gi|282853792|ref|ZP_06263129.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
gi|386071252|ref|YP_005986148.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes ATCC
11828]
gi|282583245|gb|EFB88625.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
gi|353455618|gb|AER06137.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes ATCC
11828]
Length = 287
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 61 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 120
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 121 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 179
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 180 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 235
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 236 VRQGALS---LEAIHE 248
>gi|229829441|ref|ZP_04455510.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM
14600]
gi|229791872|gb|EEP27986.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM
14600]
Length = 504
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 16/214 (7%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
+ L++G +VA PT+T+YGL DA N+++ +Y K R + PL + +++ + + A
Sbjct: 14 GEILREGGLVAFPTETVYGLGGDAENAESSRKIYAAKGRPSDNPLIVHIADFSQMEAIAQ 73
Query: 101 THTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+LA+ PGP+T++ +++ + LE + VAVR+P H RQL+ +
Sbjct: 74 ELAPQVRILADAFWPGPLTMIVRKNDRIPLETTGGLDTVAVRMPSHPVARQLILSSGCMI 133
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
A SAN S PS T + L ++ +IDGG P G STIVDLS E + +++
Sbjct: 134 AAPSANSSGRPSPTRAEHVADDLSGKIDAIIDGG----PVEIGLESTIVDLS-EGIPTVL 188
Query: 217 RKGVCYDKIL-KILHKYH------LVEKNTFPIP 243
R G ++L ++L + H L+E+N P
Sbjct: 189 RPGYINLRMLEEVLGQDHVRMDPGLMEENVSARP 222
>gi|388579288|gb|EIM19613.1| hypothetical protein WALSEDRAFT_58609 [Wallemia sebi CBS 633.66]
Length = 799
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 14/212 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA L +G +VA PT+T+YGL +A N KA+N +++ K R + PL + VS K+
Sbjct: 33 AAISLLEGKIVAFPTETVYGLGANAFNEKAVNSIFKAKGRPNDNPLIVHVSSFKMFEKYF 92
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ S+++L + L PGP+TI+ N E L E ++T V VR+P H R L+++ +
Sbjct: 93 SQPMPSSYDILTKHLWPGPLTILVNSPETLPGETTAHLTTVGVRMPSHPVARALIEISGT 152
Query: 158 PLALTSANESNEPSTLCINE-----FQKLWSQ--LSVVIDGGIISNPERFGSTIVD-LSE 209
PLA SAN S +PS + FQ+ ++ + ++DGG S+ ST++D +SE
Sbjct: 153 PLAAPSANSSGKPSPTTADHVFDDTFQRNEAREVMDFILDGG--SSDIGLESTVIDGISE 210
Query: 210 ENVYSIVR-KGVCYDKILKILHKYHLV-EKNT 239
I+R GV + I I+ +++ E+NT
Sbjct: 211 PGKIKILRPGGVTVEAIANIVGIENVIYERNT 242
>gi|448330374|ref|ZP_21519656.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema versiforme JCM 10478]
gi|445611755|gb|ELY65501.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema versiforme JCM 10478]
Length = 195
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 6/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +V PT+T+YGLA DA A+ ++E K RD +KP+++ V + +
Sbjct: 7 AAEAIEAGELVVYPTETVYGLAADALEGVAVERVFETKGRDRSKPISMAVPSVPSALQHV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT++ R E + EL +V +R+PD++ +L + +P+
Sbjct: 67 RATERERQFMGTFLPGPVTVLCRRREAVPDELTAGRDRVGIRVPDNEIALRLCERTGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + ++ +VV+DGG ST+VD+S ++ R+
Sbjct: 127 TATSANVSGRESARRPADLDPEIREAAAVVLDGGETDGGTE--STVVDVSSGTIH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D+I L ++
Sbjct: 182 GAKADEIEAWLERH 195
>gi|346315036|ref|ZP_08856552.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
2_2_44A]
gi|345905136|gb|EGX74876.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
2_2_44A]
Length = 204
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 6/200 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K A+ LK G VVA PTDT++GL N +A+ L E K R NKP+ V+++
Sbjct: 7 DKKDVKEVAELLKNGKVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPIPTMVADV 66
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ A + L +PG T++ + E L + V +R+PD F+ +L+
Sbjct: 67 EQMKCIAQMPAEAVALADAFMPGAFTMILKKQETLPDYVTNGFPTVGIRMPDDPFVLRLI 126
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE-RFGSTIVDLSEEN 211
K PL +TSAN S E + + +++ QL ID ++ + + STIVD+SEE
Sbjct: 127 KECGKPLLVTSANRSGEETGV---RDEQVLEQLDGRIDAIVLGEAKGKLASTIVDMSEEE 183
Query: 212 VYSIVRKG-VCYDKILKILH 230
IVR+G + D I ++LH
Sbjct: 184 -PRIVREGPISADDIKRVLH 202
>gi|422459293|ref|ZP_16535941.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL050PA2]
gi|422575707|ref|ZP_16651245.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL001PA1]
gi|314923484|gb|EFS87315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL001PA1]
gi|315103527|gb|EFT75503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL050PA2]
Length = 290
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|150399931|ref|YP_001323698.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB]
gi|150012634|gb|ABR55086.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB]
Length = 205
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 8/197 (4%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
K + + + +G V+ TDTLYGL+ +A + AI +Y+IKKRD NKP++I + E
Sbjct: 16 KEIEIVKKVVLEGGVILCGTDTLYGLSTNALDENAIEKIYKIKKRDPNKPISISLGEKYQ 75
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
+ K+ + +L+ + +PGP+TI+ + + L L N V VRIPD+ +R++ +
Sbjct: 76 VEKYVYVDDTARKLIDKFMPGPITIILKKKDILPDILGKN--DVGVRIPDNDVIRKISVV 133
Query: 155 MDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
PL TSAN S E S + + E K+ ++ ++ID G + R STI+ + + +
Sbjct: 134 ---PLTTTSANISGEVSPIALEEVDPKVKEKVDLIIDSGTCKH--RMQSTIIKVIDGKIE 188
Query: 214 SIVRKGVCYDKILKILH 230
I + ++ ILK L
Sbjct: 189 LIREGKIPFEDILKALE 205
>gi|20093338|ref|NP_619413.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A]
gi|19918700|gb|AAM07893.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A]
Length = 360
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G VA PT+T+YGL + + +A+ ++E K+R PL++ V D+ K A
Sbjct: 28 AAEIIRRGGTVAFPTETVYGLGANGLDPEAVRKIFEAKERPPGNPLSLLVHSGEDVGKVA 87
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +F L+ PGP+TIV + + + + N+ + +R+PDH+ +L+K +P
Sbjct: 88 KNIPEKAFRLMDSFWPGPLTIVLEKKDIVPEITSGNLPSIGLRMPDHRIPLELVKRAGTP 147
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S +PS +L + L ++ VIDGG + ST+VD++ E +
Sbjct: 148 LAAPSANLSGKPSPSLAAHVLADLTGRIDAVIDGGGTAI--GLESTVVDMTVEPPVVLRP 205
Query: 218 KGVCYDKILKILHK 231
V ++ K++ K
Sbjct: 206 GAVGIAELEKVIGK 219
>gi|50842729|ref|YP_055956.1| SUA5 related protein [Propionibacterium acnes KPA171202]
gi|50840331|gb|AAT82998.1| SUA5 related protein [Propionibacterium acnes KPA171202]
Length = 307
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 81 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 140
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 141 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 199
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 200 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 255
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 256 VRQGALS---LEAIHE 268
>gi|289425314|ref|ZP_06427091.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
gi|289428531|ref|ZP_06430215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
gi|295130810|ref|YP_003581473.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
gi|335054319|ref|ZP_08547136.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium sp. 434-HC2]
gi|387503625|ref|YP_005944854.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes 6609]
gi|407935648|ref|YP_006851290.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes C1]
gi|417929209|ref|ZP_12572593.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK182]
gi|422524154|ref|ZP_16600163.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL053PA2]
gi|289154292|gb|EFD02980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
gi|289158225|gb|EFD06444.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
gi|291376823|gb|ADE00678.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
gi|315077780|gb|EFT49831.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL053PA2]
gi|333765117|gb|EGL42484.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium sp. 434-HC2]
gi|335277670|gb|AEH29575.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes 6609]
gi|340773332|gb|EGR95824.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK182]
gi|407904229|gb|AFU41059.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes C1]
gi|456739444|gb|EMF63987.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
FZ1/2/0]
Length = 287
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 61 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 120
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 121 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 179
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 180 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 235
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 236 VRQGALS---LEAIHE 248
>gi|335052335|ref|ZP_08545226.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium sp. 409-HC1]
gi|342213240|ref|ZP_08705965.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium sp.
CC003-HC2]
gi|365962942|ref|YP_004944508.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965183|ref|YP_004946748.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974117|ref|YP_004955676.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes TypeIA2
P.acn33]
gi|333764159|gb|EGL41560.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium sp. 409-HC1]
gi|340768784|gb|EGR91309.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium sp.
CC003-HC2]
gi|365739623|gb|AEW83825.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741864|gb|AEW81558.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744116|gb|AEW79313.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes TypeIA2
P.acn33]
Length = 287
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 61 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 120
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 121 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 179
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 180 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 235
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 236 VRQGALS---LEAIHE 248
>gi|422388708|ref|ZP_16468811.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL096PA2]
gi|422392865|ref|ZP_16472918.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL099PA1]
gi|422424721|ref|ZP_16501671.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL043PA1]
gi|422430768|ref|ZP_16507647.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL072PA2]
gi|422438307|ref|ZP_16515151.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL092PA1]
gi|422449308|ref|ZP_16526033.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL036PA3]
gi|422457128|ref|ZP_16533790.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL030PA1]
gi|422462119|ref|ZP_16538743.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL038PA1]
gi|422474989|ref|ZP_16551453.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL056PA1]
gi|422478318|ref|ZP_16554741.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL007PA1]
gi|422480855|ref|ZP_16557258.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL063PA1]
gi|422483357|ref|ZP_16559746.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL036PA1]
gi|422485160|ref|ZP_16561522.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL043PA2]
gi|422488414|ref|ZP_16564743.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL013PA2]
gi|422490515|ref|ZP_16566830.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL020PA1]
gi|422493530|ref|ZP_16569830.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL086PA1]
gi|422498283|ref|ZP_16574555.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL002PA3]
gi|422502090|ref|ZP_16578335.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL027PA2]
gi|422506046|ref|ZP_16582269.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL036PA2]
gi|422508337|ref|ZP_16584518.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL046PA2]
gi|422516491|ref|ZP_16592600.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA2]
gi|422518855|ref|ZP_16594923.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL074PA1]
gi|422522110|ref|ZP_16598140.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL045PA1]
gi|422527498|ref|ZP_16603488.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL083PA1]
gi|422529931|ref|ZP_16605897.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL053PA1]
gi|422532126|ref|ZP_16608072.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA1]
gi|422534572|ref|ZP_16610496.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL072PA1]
gi|422537124|ref|ZP_16613012.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL078PA1]
gi|422545188|ref|ZP_16621018.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL082PA1]
gi|422552017|ref|ZP_16627808.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA3]
gi|422553952|ref|ZP_16629724.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA2]
gi|422560733|ref|ZP_16636420.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA1]
gi|422568429|ref|ZP_16644047.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL002PA2]
gi|313772060|gb|EFS38026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL074PA1]
gi|313791910|gb|EFS40011.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA1]
gi|313801608|gb|EFS42848.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL110PA2]
gi|313810260|gb|EFS47981.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL083PA1]
gi|313818788|gb|EFS56502.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL046PA2]
gi|313820560|gb|EFS58274.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL036PA1]
gi|313822635|gb|EFS60349.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL036PA2]
gi|313825432|gb|EFS63146.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL063PA1]
gi|313830590|gb|EFS68304.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL007PA1]
gi|313833626|gb|EFS71340.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL056PA1]
gi|313838321|gb|EFS76035.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL086PA1]
gi|314924925|gb|EFS88756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL036PA3]
gi|314960550|gb|EFT04652.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL002PA2]
gi|314962566|gb|EFT06666.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL082PA1]
gi|314973591|gb|EFT17687.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL053PA1]
gi|314975813|gb|EFT19908.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL045PA1]
gi|314978721|gb|EFT22815.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL072PA2]
gi|314983708|gb|EFT27800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA1]
gi|314987889|gb|EFT31980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA2]
gi|314989700|gb|EFT33791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA3]
gi|315080407|gb|EFT52383.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL078PA1]
gi|315084736|gb|EFT56712.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL027PA2]
gi|315085420|gb|EFT57396.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL002PA3]
gi|315088522|gb|EFT60498.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL072PA1]
gi|315095864|gb|EFT67840.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL038PA1]
gi|315105834|gb|EFT77810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL030PA1]
gi|327326416|gb|EGE68206.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL096PA2]
gi|327443485|gb|EGE90139.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL013PA2]
gi|327445688|gb|EGE92342.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL043PA2]
gi|327448328|gb|EGE94982.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL043PA1]
gi|327453371|gb|EGF00026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL092PA1]
gi|328754697|gb|EGF68313.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL020PA1]
gi|328760893|gb|EGF74458.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL099PA1]
Length = 290
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|383456098|ref|YP_005370087.1| Sua5/YciO/YrdC/YwlC family protein [Corallococcus coralloides DSM
2259]
gi|380734794|gb|AFE10796.1| Sua5/YciO/YrdC/YwlC family protein [Corallococcus coralloides DSM
2259]
Length = 206
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 21 LPSKMCSIVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEI 76
+P + I++V P+ A + L+KG ++A PTDT YGL CD KAI LY++
Sbjct: 1 MPPAVAPILEVDVDHPSPRHVARAVEVLEKGGLIAYPTDTYYGLGCDLNAKKAIERLYQL 60
Query: 77 KKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
K RD KPL++ +++D+ ++A ++ + L PG T + + + +
Sbjct: 61 KGRDKKKPLSLLCPDLSDVARYAHVSNFAYRAMKGLTPGAFTFILEATRLVPEVMMTKQK 120
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIIS 195
+V +R+PD R+L K + PL TSA ++ + + L L +++DGG+
Sbjct: 121 QVGLRVPDAALPRELAKALGRPLITTSATHTDGTVLSDARDIKTALGHGLDLILDGGVTL 180
Query: 196 NPERFGSTIVDLSEENVYSIVRKG 219
N ST+V L + + I+R+G
Sbjct: 181 NEP---STVVSLIGDTL-EILRQG 200
>gi|85859579|ref|YP_461781.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB]
gi|85722670|gb|ABC77613.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB]
Length = 202
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 6/187 (3%)
Query: 29 VKVTDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLA 86
+ +P+ L+ A+ L+ G +V PTDT+YGL C+ N K I +YEIKKR+ +PL+
Sbjct: 5 INTQNPQTRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLS 64
Query: 87 ICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
+++ DI K+A + ++ LPGP T + S + + P +R+PD++
Sbjct: 65 FICADLKDISKYAQVTDFGYRIMKRHLPGPYTFILQASRLVPKIILPKRQTTGIRVPDNR 124
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIV 205
L+ + P+ TS +++ E + ++ + V+I+GGII+ STIV
Sbjct: 125 ICMALVAELGQPIISTSVKAADDRYLNDPEEIESIFKHHVDVIINGGIIAAEP---STIV 181
Query: 206 DLSEENV 212
L ++ V
Sbjct: 182 SLIDDTV 188
>gi|422384674|ref|ZP_16464809.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL096PA3]
gi|327331709|gb|EGE73446.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL096PA3]
Length = 290
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|422427844|ref|ZP_16504755.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL087PA1]
gi|422433425|ref|ZP_16510293.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL059PA2]
gi|422435983|ref|ZP_16512840.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL083PA2]
gi|422443790|ref|ZP_16520588.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL002PA1]
gi|422445967|ref|ZP_16522714.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL027PA1]
gi|422451603|ref|ZP_16528304.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL030PA2]
gi|422454206|ref|ZP_16530886.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL087PA3]
gi|422495555|ref|ZP_16571842.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL025PA1]
gi|422501557|ref|ZP_16577811.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL063PA2]
gi|422510409|ref|ZP_16586555.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL059PA1]
gi|422539213|ref|ZP_16615086.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL013PA1]
gi|422543127|ref|ZP_16618977.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL037PA1]
gi|422548057|ref|ZP_16623873.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL050PA3]
gi|422549934|ref|ZP_16625734.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL050PA1]
gi|422558459|ref|ZP_16634199.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL025PA2]
gi|422562825|ref|ZP_16638502.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL046PA1]
gi|422570180|ref|ZP_16645787.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL067PA1]
gi|422578443|ref|ZP_16653967.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA4]
gi|313764218|gb|EFS35582.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL013PA1]
gi|313812713|gb|EFS50427.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL025PA1]
gi|313816311|gb|EFS54025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL059PA1]
gi|313827395|gb|EFS65109.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL063PA2]
gi|314915696|gb|EFS79527.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL005PA4]
gi|314917935|gb|EFS81766.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL050PA1]
gi|314920318|gb|EFS84149.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL050PA3]
gi|314931538|gb|EFS95369.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL067PA1]
gi|314955549|gb|EFS99952.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL027PA1]
gi|314957923|gb|EFT02026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL002PA1]
gi|314967571|gb|EFT11670.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL037PA1]
gi|315098769|gb|EFT70745.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL059PA2]
gi|315101461|gb|EFT73437.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL046PA1]
gi|315108753|gb|EFT80729.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL030PA2]
gi|327450547|gb|EGE97201.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL087PA3]
gi|327454114|gb|EGF00769.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL083PA2]
gi|328753197|gb|EGF66813.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL025PA2]
gi|328753964|gb|EGF67580.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL087PA1]
Length = 290
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|422513607|ref|ZP_16589730.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL087PA2]
gi|313807751|gb|EFS46238.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL087PA2]
Length = 290
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNTLAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|116873906|ref|YP_850687.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116742784|emb|CAK21908.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 345
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 112/205 (54%), Gaps = 9/205 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+KG VA PT+T+YGL DATN AI +Y K R + PL + ++ + ++
Sbjct: 21 AAKLLQKGECVAFPTETVYGLGADATNQAAIQKIYTAKGRPSDNPLIVHIARREQMDQFV 80
Query: 100 DTH-TVSFELLAELLPGPVTIVFNR-SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+++ + +L+ + PGP+T++ + L ++ ++ V VR+P+H L+K +
Sbjct: 81 ESYPPKAIQLMEKFWPGPLTLILPLIKDSLAANVSAGLSTVGVRMPEHPVSLDLIKTANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + + L +++ +IDGG P G ST++D S+E
Sbjct: 141 PVAAPSANRSGKPSPTTAAHVIEDLDGKIAGIIDGG----PTGVGLESTVIDCSQETPVI 196
Query: 215 IVRKGVCYDKILKILHKYHLVEKNT 239
+ G+ ++I +++ + +T
Sbjct: 197 LRPGGITKEQIERVIGPVKVATNST 221
>gi|385808631|ref|YP_005845027.1| SUA5-like translation factor [Ignavibacterium album JCM 16511]
gi|383800679|gb|AFH47759.1| Putative SUA5-like translation factor [Ignavibacterium album JCM
16511]
Length = 314
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 4/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +VA PT+T+YGL +A + A++ ++E+K+R PL + + I + A
Sbjct: 6 AAEYIRNGKLVAFPTETVYGLGANALDPFAVSKIFELKERPAFDPLIVHIESIESAEQLA 65
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
DT F LAE PGP+TIV + + + + + V +R+P+HK +L+KL P
Sbjct: 66 DTKNNKFHRLAEKFWPGPLTIVLPKKKIIPDIVTSGLDTVGLRMPNHKIALELIKLSGCP 125
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
+A SAN+ S +K + Q+ +IDGG ST++ L E++ + I+R
Sbjct: 126 IAAPSANKFGRVSPTSAQHVKKYFPQIDCIIDGG--KTQVGIESTVIYLYEDS-FEILRP 182
Query: 219 GV 220
G+
Sbjct: 183 GI 184
>gi|422390439|ref|ZP_16470534.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL103PA1]
gi|422465117|ref|ZP_16541724.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL060PA1]
gi|422564528|ref|ZP_16640179.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL082PA2]
gi|314966528|gb|EFT10627.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL082PA2]
gi|315092952|gb|EFT64928.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL060PA1]
gi|327327352|gb|EGE69128.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL103PA1]
Length = 290
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGKTNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|261210756|ref|ZP_05925048.1| YrdC family protein [Vibrio sp. RC341]
gi|260840241|gb|EEX66821.1| YrdC family protein [Vibrio sp. RC341]
Length = 320
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + + +R+P H L ++LK
Sbjct: 77 TDIADEAYQLAQAFWPGPLTMLLPKAEHVSPVVTGGLDTIGIRVPAHPVLLEILKAHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+A SAN + S + L +L+ V+DGG + STIVDL+
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLT 185
>gi|451342786|ref|ZP_21911869.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449338517|gb|EMD17662.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 200
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
V + K L AQ + G +VA PT+T+YGLAC +S A++ L + K+RD +K + + +
Sbjct: 4 VVEEKEIDLIAQAIGNGEIVAFPTETVYGLACKFNDSDALDKLMDAKERDYSKAVTLMLK 63
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+I DI K+ +T ++ + +PG +T+V R + ++ + + + +RIPD +F
Sbjct: 64 DIDDIGKYGETDENIMKIARKFMPGRITLVLKRKKTVDPIMTNYLPTIGIRIPDSQF--- 120
Query: 151 LLKLMD--SPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
+L L+D P+ +TSAN S P+T E +L ++S V+ G S ST+V L
Sbjct: 121 VLNLIDKTGPILVTSANLSGHPNTTNEKEVLHQLEGRISYVVKGQCSS---ALASTVVLL 177
Query: 208 SEENVYSIVRKGVCYDK 224
++ + I+R+G+ + K
Sbjct: 178 TDGKI-EILREGLIHKK 193
>gi|334139397|ref|ZP_08512789.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. HGF7]
gi|333602210|gb|EGL13641.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. HGF7]
Length = 361
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 10/206 (4%)
Query: 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
+ T KA AA L +G VA PT+T+YGL DATNS A+ +Y K R + PL + +
Sbjct: 20 RETADKAIAEAAGLLVQGETVAFPTETVYGLGADATNSAAVEGIYRAKGRPSDNPLIVHI 79
Query: 90 SEITDIPKWADTHTVS--FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHK 146
++ + + +A+ L+ PGP+T++ R+ ++ + ++ V VRIPDH
Sbjct: 80 ADRSQMDAFAEGAPAEPLRRLMDAFWPGPLTVIVPVRAGAVSPLVTAGLSTVGVRIPDHP 139
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
LL+ P+A SAN S PS T+ + L ++ ++DGG P G ST
Sbjct: 140 VALALLRAAGCPVAAPSANSSGRPSPTMAEHVADDLGGRIGGIVDGG----PTGVGVEST 195
Query: 204 IVDLSEENVYSIVRKGVCYDKILKIL 229
+V+ + VY + GV +++ + L
Sbjct: 196 VVEWASGAVYILRPGGVTAEQLREAL 221
>gi|397772281|ref|YP_006539827.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema sp. J7-2]
gi|397681374|gb|AFO55751.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema sp. J7-2]
Length = 195
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL A + + ++E+K RD KPL+ V + ++
Sbjct: 7 AADAIESGALVVYPTETVYGLGGAALEPEPVERVFEVKGRDRTKPLSFAVPSVPSALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R + EL +V VRIPD+ L + +P+
Sbjct: 67 RATDRERRFMATFLPGPVTVLCRRRAAVPDELTAGRERVGVRIPDNDLALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++E ++ +VV+DGG ST+VD+S ++ R+
Sbjct: 127 TATSANVSGRESARRLDELDPEIREAAAVVLDGGRTDGGTE--STVVDVSSGTIH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D+I L ++
Sbjct: 182 GAQADEIDAWLERH 195
>gi|219850818|ref|YP_002465250.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris
E1-9c]
gi|219545077|gb|ACL15527.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris
E1-9c]
Length = 193
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L + +V PTDT+YGL DA + +A+ +YE K R + KP++I VS+ + A
Sbjct: 7 AVKVLHRDGLVVYPTDTIYGLGADALSDEAVAAVYEAKHRPLAKPISIAVSDRDMLAALA 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
V+ + + LPGP T+V + L L + +RIPDH +L++ D P+
Sbjct: 67 VVTPVAEQFIEAFLPGPFTVVLKAKKVLPETLTGGTGMIGLRIPDHPIALELIREFDGPI 126
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S + IN+ + L ID G ++ ST+VDL + ++R G
Sbjct: 127 TATSANLSGGKDPVTINDVHVRYDLL---IDAGRLTG---LPSTVVDLVD---MRMIRPG 177
Query: 220 VCYDKILKILHK 231
+D+ L K
Sbjct: 178 EKFDEAAAFLRK 189
>gi|262402565|ref|ZP_06079126.1| YrdC family protein [Vibrio sp. RC586]
gi|262351347|gb|EEZ00480.1| YrdC family protein [Vibrio sp. RC586]
Length = 321
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLCEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ ++EH++ + + V +R+P H L ++LK
Sbjct: 77 TDIADEAYQLAQAFWPGPLTMLLPKAEHVSPVVTGGLETVGLRVPAHPVLLEILKAHHLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGKLAAVLDGGECQH--GLESTIVDLTSKPI-RVLR 193
Query: 218 KG 219
G
Sbjct: 194 AG 195
>gi|406893379|gb|EKD38459.1| hypothetical protein ACD_75C00728G0003 [uncultured bacterium]
Length = 203
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 9/183 (4%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+A L+ + LK G V+ PTDT YG+ CD N KAI + ++K+R +KP +
Sbjct: 9 NPQARLIDQVVKLLKSGAVICYPTDTGYGIGCDLFNQKAIKQVMQLKRRPHDKPFSFMCF 68
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
++TDI ++A ++ L+ + LPGP T V ++ + + V +R+P H R
Sbjct: 69 DLTDISQYAHVSNTAYRLMKKCLPGPYTFVLPGTKLVPRVMASKQKTVGIRVPGHPISRL 128
Query: 151 LLKLMDSPLALTSANESNEPSTLCINEF--QKLWSQLSVVIDGG-IISNPERFGSTIVDL 207
L++ + +P+ TS +E + L + Q + +++ ++IDGG I +P ST++DL
Sbjct: 129 LIETLGNPVVNTSVMLDDEQAALADPYYIDQYIGNRIDLIIDGGPIFPDP----STVIDL 184
Query: 208 SEE 210
+ +
Sbjct: 185 TSD 187
>gi|422396677|ref|ZP_16476708.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL097PA1]
gi|327329872|gb|EGE71626.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
HL097PA1]
Length = 300
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 64 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 123
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 124 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 182
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 183 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 238
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 239 VRQGALS---LEAIHE 251
>gi|189485673|ref|YP_001956614.1| Sua5-related translation factor [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287632|dbj|BAG14153.1| Sua5-related translation factor [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 202
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 5/196 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D A A+ ++ G + +PTDT+YG A DA N +A ++Y+IK R K + V +I
Sbjct: 9 DKMAYKKVAEVIRNGGIAIVPTDTVYGFAVDAFNIEAQKVVYKIKGRSHKKSFILMVPDI 68
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
I + + ++ PG +T++ +E + L+ + VRIPD KF+ +LL
Sbjct: 69 ESIRILVEIPEKALKIAKRFWPGQLTLILPTTEMGKI-LSGGKKDLGVRIPDSKFMLKLL 127
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
K M SP+ TS N SN+ S I+E + + + +DGG F ST++D+ +
Sbjct: 128 KEMGSPVFTTSVNMSNKKSAKNIDETLRFDEMVDIAVDGGQCRFS--FESTVIDMVKFP- 184
Query: 213 YSIVRKG-VCYDKILK 227
Y +VR+G + DKILK
Sbjct: 185 YMVVRRGCLDTDKILK 200
>gi|325291370|ref|YP_004267551.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271]
gi|324966771|gb|ADY57550.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271]
Length = 368
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 112/209 (53%), Gaps = 14/209 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK-- 97
AAQ +K G +VA PT+T+YGL DA N +A ++++K R + PL + V+++ + +
Sbjct: 32 AAQLIKAGNLVAFPTETVYGLGADALNPRACAEIFKVKGRPADNPLILHVADLEEARRLT 91
Query: 98 --WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
W D + PGP+T+V ++E + ++ + VA R+PDH L++L
Sbjct: 92 SFWNDKAEIC---AGAFWPGPLTMVLPKAEFIPDVISGGLKTVAFRMPDHPVALSLIRLS 148
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
PLA SAN S +PS T + +Q L ++ ++ID G + ST++DLSEE
Sbjct: 149 GCPLAAPSANLSGKPSPTDGEHVWQDLQGRIPLMIDAGKCAI--GLESTVLDLSEEIPVI 206
Query: 215 IVRKGVCYDKILKILHKYH----LVEKNT 239
+ G+ +++ ++L K L E NT
Sbjct: 207 LRPGGITREQLEEVLGKVEVDPFLTEMNT 235
>gi|315230833|ref|YP_004071269.1| YrdC/Sua5 protein [Thermococcus barophilus MP]
gi|315183861|gb|ADT84046.1| putative YrdC/Sua5 protein [Thermococcus barophilus MP]
Length = 341
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 8/180 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +AA+ +++G +VA PT+T+YGL DA N KA+ ++E K R + PL + ++
Sbjct: 12 DNRKIKIAAKFIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIVHIARF 71
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + A E+LAE PGP+TIV + +++ + VA+R+P H+ L
Sbjct: 72 EQLYELARNVPREAEILAEHFWPGPLTIVLPKKDNVPKTTTGGLDTVAIRMPAHEIALNL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+K P+A SAN S +PS TL + + ++ +IDGG + + G ST++DL+
Sbjct: 132 IKASGRPIAAPSANISGKPSPTLAEHVVDDFYGRIECIIDGGEV----KIGVESTVLDLT 187
>gi|251799799|ref|YP_003014530.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2]
gi|247547425|gb|ACT04444.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2]
Length = 356
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 5/183 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G +VA PT+T+YGL DA N+ A+ +++ K R + PL + +++ + +
Sbjct: 25 AASLLRDGELVAFPTETVYGLGADARNTTAVEGIFKAKGRPSDNPLIVHIADENQLAELV 84
Query: 100 DTH-TVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ ++ L+ EL PGP+TIV R+ ++ + +T V +R+PDH L++
Sbjct: 85 LPYPELAGRLMKELWPGPLTIVLPVRTGAVSPLVTAGLTTVGIRMPDHPAALALIRQSGC 144
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S PS TL + + L ++S ++DGG ST+++L + N I+
Sbjct: 145 PVAAPSANRSGRPSPTLAAHVLEDLAGKISGIVDGGATGV--GLESTVIELPDSNTIRIL 202
Query: 217 RKG 219
R G
Sbjct: 203 RPG 205
>gi|419421425|ref|ZP_13961653.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes PRP-38]
gi|379977916|gb|EIA11241.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes PRP-38]
Length = 297
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G + LPTDT+YG+ DA N+ A+ L K+R + P + VS+ +P
Sbjct: 61 AADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVALPALC 120
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LAE PG +T+V E L ++L +AVR+PD R+LL+ M P
Sbjct: 121 QHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNGTLAVRVPDQDQTRELLR-MTGP 179
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA++SAN+S P+ L E +L +++V +D G P R G STI+D +
Sbjct: 180 LAVSSANKSGHPAALTAQEAADQLGVEVAVYLDAG----PSRVGESSTIIDFVSTTDGKV 235
Query: 216 VRKGVCYDKILKILHK 231
VR+G L+ +H+
Sbjct: 236 VRQGALS---LEAIHE 248
>gi|339441923|ref|YP_004707928.1| putative translation factor [Clostridium sp. SY8519]
gi|338901324|dbj|BAK46826.1| putative translation factor [Clostridium sp. SY8519]
Length = 352
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 5/197 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP+ AA +++G +VA PT+T+YGL DA + +Y K R + PL + +
Sbjct: 14 DPEIIKEAAALIRRGELVAFPTETVYGLGADALLPEGARRIYAAKGRPSDNPLIVHICAY 73
Query: 93 TDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ K LLAE PGP+T++F +SE + E + VAVR+P H L
Sbjct: 74 DALKKITADLPREAALLAEAFWPGPLTMIFRKSECVPRETTGGMDTVAVRMPSHPVAAAL 133
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
++ +A SAN S PS TL + ++ L ++ +++DGG + STIVDLSEE
Sbjct: 134 IRESGGYIAAPSANTSGRPSPTLARHVYEDLQGRIPLILDGGAVGI--GLESTIVDLSEE 191
Query: 211 NVYSIVRKGVCYDKILK 227
V I+R G ++L+
Sbjct: 192 -VPMILRPGYITKEMLE 207
>gi|154151514|ref|YP_001405132.1| Sua5/YciO/YrdC/YwlC family protein [Methanoregula boonei 6A8]
gi|154000066|gb|ABS56489.1| Sua5/YciO/YrdC/YwlC family protein [Methanoregula boonei 6A8]
Length = 190
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 13/193 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L ++ PTDTLYGL DA + +A+ +YE KKRD++KP++I VS+ + +
Sbjct: 7 AVSVLTHDGLIVYPTDTLYGLGADAFSDEALEKVYEAKKRDLSKPISIAVSDFEMLAAVS 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T + E + LPGPVT++ + L L+ + +RIP H Q+++ D+P+
Sbjct: 67 HTTPFAEEFIERFLPGPVTVIVPVRKMLPEILSGGTGMIGIRIPAHGVALQIIEKFDAPI 126
Query: 160 ALTSANESN--EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
TSAN S +P T ++ + +DGG ++ ST+VDL+++ IVR
Sbjct: 127 TATSANLSGGKDPQTP-----EECTVPRDLFVDGGRLAGKP---STVVDLTKKE---IVR 175
Query: 218 KGVCYDKILKILH 230
+G D I L
Sbjct: 176 RGAEADAIEAFLR 188
>gi|160872705|ref|ZP_02062837.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli]
gi|159121504|gb|EDP46842.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli]
Length = 307
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 10/206 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A CLK G ++ LPT+T+Y LA DATN AI ++ +K+R +N+PL++ +++ + +WA
Sbjct: 10 AVSCLKAGKLIVLPTETVYALAGDATNLNAILQIFSLKRRPLNQPLSVLLAKEHPMTRWA 69
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D V+ +L PGP+T++ + + + EL K+ +R+PDH + +L
Sbjct: 70 RDIPEVAEKLAERFWPGPLTLILKKEKTVLPELTGGQHKIGLRVPDHPIAQAVLSSFARG 129
Query: 159 LALTSANESNEPSTLCINEFQKLWSQ-LSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S S I + + Q L +IDGG P R G STI+D++ + I
Sbjct: 130 VAAPSANRSTALSPTHIKHVRAEFDQPLEWMIDGG----PCRIGIESTIIDVT-FTIPRI 184
Query: 216 VRKGVCYDKILKILHKYHLVEKNTFP 241
+R G + + Y +EK+T P
Sbjct: 185 LRLGALPLAKIASITPYE-IEKSTSP 209
>gi|116753773|ref|YP_842891.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta thermophila PT]
gi|116665224|gb|ABK14251.1| translation factor SUA5 [Methanosaeta thermophila PT]
Length = 198
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+C+ G +V PT+T+YG+ +A + +I +Y IK+R ++KP++I VS + A
Sbjct: 12 AARCILSGGIVVYPTETVYGIGANALDESSIVRVYAIKRRPLDKPISIAVSSFEMLCDVA 71
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+++ +LLPGPVT + + + L V VR PDH+ +L++ M P+
Sbjct: 72 HVRPEDLDMMRKLLPGPVTFLVRKRSIVPDMLTAGSPLVGVRYPDHEMALRLIE-MTGPI 130
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
TSAN + P E ++ S++ ++IDGG R+ ST+VDLS I+
Sbjct: 131 TSTSANITGAPPPSDPKEIDPEILSRVDMLIDGGRC----RYAVPSTLVDLSTRR---IL 183
Query: 217 RKGVCYDKILKILHK 231
R G D++L+++ +
Sbjct: 184 RMGAMADRVLEVIGR 198
>gi|340355726|ref|ZP_08678402.1| Sua5/YciO/YrdC/YwlC family protein [Sporosarcina newyorkensis 2681]
gi|339622134|gb|EGQ26665.1| Sua5/YciO/YrdC/YwlC family protein [Sporosarcina newyorkensis 2681]
Length = 343
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 9/203 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A LK G +VA PT+T+YGL AT+ +A+ ++E K R + PL + + +D+ ++
Sbjct: 21 AVDILKSGGLVAFPTETVYGLGAVATDEQAVRKIFEAKGRPADNPLIVHIGRQSDMERFV 80
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLE-LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A V+ +L+ PGP+T+V + + E + + VA+R+PDH QLL+ ++
Sbjct: 81 ARVPEVAAQLIEAFWPGPLTLVMEKKPGVIAETVTAGMETVAIRMPDHPVALQLLQKLEL 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S +PS T + + L ++ +++DGG G ST++D++
Sbjct: 141 PLAAPSANRSGKPSPTEAEHVYHDLLGKIPLILDGGATG----IGVESTVLDITVTPPVI 196
Query: 215 IVRKGVCYDKILKILHKYHLVEK 237
+ G+ +++ ++ HL K
Sbjct: 197 LRPGGIVKEQLEALIGTVHLAAK 219
>gi|406888991|gb|EKD35305.1| hypothetical protein ACD_75C01962G0005 [uncultured bacterium]
Length = 215
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 18/204 (8%)
Query: 25 MCSIVKVTDPKAALL-AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
MCSI +++ AA L++G +VA PT+T YGLA D A+ L+++K+R K
Sbjct: 1 MCSISPKDRIGSSIRHAAVVLQQGGIVAFPTETYYGLAVDPDCESAVARLFQVKQRQAYK 60
Query: 84 PLAICVSE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
PL + + +++IP H +EL+ + PGP+T+VF ++L+ +L N
Sbjct: 61 PLLLLIDRSEQLSDLVSEIP-----HRY-WELMEKFWPGPLTLVFPARKNLSRQLTGNTG 114
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESN-EPSTLCINEFQKLWSQLSVVIDGGIIS 195
+ +RI H R+L++ M P+ TSAN S P+ F+ +++ ++DGG
Sbjct: 115 TIGIRISPHPIARKLVRKMGKPITATSANLSGAAPAKTADEVFEMFQNRVDYILDGG--E 172
Query: 196 NPERFGSTIVDLSEENVYSIVRKG 219
ST+V L + N+ +I+RKG
Sbjct: 173 TAAGLCSTVVGLQDGNL-TILRKG 195
>gi|254381244|ref|ZP_04996609.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1]
gi|194340154|gb|EDX21120.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1]
Length = 335
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 6/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G +VALPT+T+YGL +A + A+ ++++K R + PL + ++ + W
Sbjct: 21 AAEVLRAGGLVALPTETVYGLGANAEDPAAVARIFQVKGRPPSHPLIVHIAAAEHLDDWV 80
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+T + LLAE PGP+T+V R + LE + VAVR+PDH LL
Sbjct: 81 ETVPETARLLAEHFWPGPLTLVLRRGPRVPLEATGGLETVAVRVPDHPVALALLSAFGGG 140
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ SAN S + + +L + +V+DGG S STIVD++ E V SI+R
Sbjct: 141 VTAPSANRFGSVSPTTADHVRTELGGAVDLVLDGG--SCEVGVESTIVDVTGE-VPSILR 197
Query: 218 -KGVCYDKILKILHKYHLVEKNT 239
GV + + +L + V +
Sbjct: 198 PGGVTREDLEAVLSRSMAVPSTS 220
>gi|402833162|ref|ZP_10881782.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Selenomonas sp. CM52]
gi|402281154|gb|EJU29845.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Selenomonas sp. CM52]
Length = 375
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 109/210 (51%), Gaps = 23/210 (10%)
Query: 30 KVTDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
KV P AA + AA L+ G VVA PT+T+YGL + ++ A +YE K R + PL +
Sbjct: 5 KVLPPTAAAIEEAAHLLRAGEVVAFPTETVYGLGANGFDAAACTKIYEAKGRPSDNPLIL 64
Query: 88 CVS------EIT-DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAV 140
++ E+ D+P+ A+ LLA PGP+T+V R + + + V V
Sbjct: 65 HIAHRAMLDEVALDVPEMAE------HLLAAFAPGPLTLVLRRRAAVPDRITGGLATVGV 118
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPER 199
R+P++ L++ PLA SAN S PS T + L ++ +++DGG P R
Sbjct: 119 RMPENDAALALIRATGFPLAAPSANTSGRPSPTTAEAVLEDLAGRIPLILDGG----PCR 174
Query: 200 FG--STIVDLSEENVYSIVRKGVCYDKILK 227
FG STIVD++ E I+R G ++L+
Sbjct: 175 FGVESTIVDVTGEAAV-ILRPGAITREMLE 203
>gi|320161912|ref|YP_004175137.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1]
gi|319995766|dbj|BAJ64537.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1]
Length = 360
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 6/207 (2%)
Query: 36 AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
A L A +CL+ G +VA PT+T+YGL +A + +A+ ++E K R N PL + + +
Sbjct: 20 ALLEATECLRSGGLVAFPTETVYGLGGNALDGRAVQRIFEAKGRPANDPLIVHLPSADAL 79
Query: 96 PKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
P T LAE PGP+T++ R +++ L + + VAVR+P H + LL++
Sbjct: 80 PMVVKTIPTIVSTLAEHFWPGPLTLILPRGDNVPLSVTAGLDTVAVRVPSHPVAQALLQM 139
Query: 155 MDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
+A SAN S T + + L ++ +V+DGG S P ST++D++ +
Sbjct: 140 SGLAIAAPSANRFGGVSPTSAEHVLRDLEGRIEMVLDGG--STPIGVESTVLDITAP-IP 196
Query: 214 SIVR-KGVCYDKILKILHKYHLVEKNT 239
I+R G+ + + +L + L+E+
Sbjct: 197 RILRPGGISREALEAVLGRVELLERKA 223
>gi|451948586|ref|YP_007469181.1| translation factor SUA5 [Desulfocapsa sulfexigens DSM 10523]
gi|451907934|gb|AGF79528.1| translation factor SUA5 [Desulfocapsa sulfexigens DSM 10523]
Length = 210
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A QCLK+G +VA PT+T YGLA D N +AI LY +KKR+ K +++ + ++T +
Sbjct: 11 ALQCLKQGGIVAYPTETFYGLAVDPENEQAITDLYALKKREEQKAISLIIPDVTHLLSLV 70
Query: 100 DTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ L+ PGP+T++F+ +H+ L +A+R+ H +L +
Sbjct: 71 SLVPNGYKGLMNSFWPGPLTLIFSARKHIPSILTGGTNTLALRVSSHPVAMKLAESWGGA 130
Query: 159 LALTSANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVDLSEENVY-SIV 216
L TSAN S E + + ++ ++S V+DGG P GSTIV +++ + I+
Sbjct: 131 LTTTSANISGEEALATAEDVHTVFGDRVSCVLDGG--PTPGGQGSTIVHCTDDTMECRII 188
Query: 217 RKGV 220
R+GV
Sbjct: 189 REGV 192
>gi|312880381|ref|ZP_07740181.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260]
gi|310783672|gb|EFQ24070.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260]
Length = 338
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G +VA PT+T+YGL DATN +A+ ++ K R + PL + V+ + +
Sbjct: 20 AVRVLLGGGLVAFPTETVYGLGADATNPRAVGGIFAAKGRPGDNPLIVHVASLEEAQALG 79
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ L A PGP+T+V + E+ + VA+R+P H + L++L P+
Sbjct: 80 AFDDRARALAARFWPGPLTLVVEADPRIPEEVRAGLPTVAIRMPRHPLAQDLIRLAGVPV 139
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
A SAN S PS T + + L ++ +++DGG P G ST+VD++ E V +
Sbjct: 140 AAPSANRSGRPSPTDAASVREDLDGRIPLILDGG----PAEVGVESTVVDVTGEKVVLLR 195
Query: 217 RKGVCYDKILKI 228
G+ + + ++
Sbjct: 196 PGGISSEDLERV 207
>gi|294783757|ref|ZP_06749081.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA]
gi|294480635|gb|EFG28412.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA]
Length = 217
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 116/214 (54%), Gaps = 10/214 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ +I ++D K LA++ LKKG ++ PTDT+YGLA TN ++IN +Y K R
Sbjct: 6 KIDNISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELL----PGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + E+L +L PG +T++ R EH+ + +
Sbjct: 65 PLIALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKEHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E + NE + + S++ +++DGG E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNELSEAIKSRVDILVDGGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG-VCYDKILKILHK 231
STI+DL+ +V I+R G + D+I KI+ +
Sbjct: 185 --ASTIIDLT-SDVPKILRNGAISTDEITKIIGR 215
>gi|126726057|ref|ZP_01741899.1| Putative translation factor [Rhodobacterales bacterium HTCC2150]
gi|126705261|gb|EBA04352.1| Putative translation factor [Rhodobacterales bacterium HTCC2150]
Length = 320
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
L++ L++G +VA PT+T+YGL DA N KA+ ++ K R PL + V + ++
Sbjct: 15 LSSLILQRGGLVAFPTETVYGLGADARNDKAVAAIFAAKGRPSFNPLIVHVQSLPAATEF 74
Query: 99 ADTHTVSFELLAELLPGPVTIVFN--RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
AD ++F+L PGP+++V + L+ ++ + VA+RIP H + LL++
Sbjct: 75 ADFSPLAFKLAQAFWPGPLSLVLPLLKGGQLSHLVSAGMPSVAIRIPAHPVAQGLLQVFG 134
Query: 157 SPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S + S L ++ ++DGG+ S STI+ +S+++V +
Sbjct: 135 GPIAAPSANPSGQISPTTPGHVTAGLKDRIDAILDGGLCS--VGVESTILGVSDDDVTLL 192
Query: 216 VRKGVCYDKILKIL 229
G+ ++I K++
Sbjct: 193 RPGGISVEQIAKVI 206
>gi|295092488|emb|CBK78595.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cf. saccharolyticum
K10]
Length = 377
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKW 98
AA L++G +VA PT+T+YGL +A + A +YE K R + PL +++ + P
Sbjct: 48 AAAILREGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADFEALAPLT 107
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A+ +L PGP+T+VF +S + + VAVR+P R+L++L P
Sbjct: 108 AEIPEAGRKLAEAFWPGPLTMVFKKSGVVPHGTTGGLETVAVRMPSDPVARELIRLAGVP 167
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + Q + ++ +++DGG P G STIVD++EE + ++
Sbjct: 168 IAAPSANTSGRPSPTRAEHVLQDMDGKIEMIVDGG----PVGIGVESTIVDVTEE-IPTL 222
Query: 216 VRKGVCYDKILK 227
+R G ++L+
Sbjct: 223 LRPGAVTMEMLR 234
>gi|302390585|ref|YP_003826406.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646]
gi|302201213|gb|ADL08783.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646]
Length = 343
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 8/206 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
+P++ LAA+ +K G +VA PT+T+YGL +A + KA +Y+ KKR + PL + +
Sbjct: 10 EPESINLAARVIKNGGLVAFPTETVYGLGANALDEKAAFKIYQAKKRPQDNPLIVHIHSP 69
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++ K A + +L E PGP+TIV +S + + VAVR+P H L
Sbjct: 70 GELDKLASNVPRTARILMEKFWPGPLTIVLEKSGAVPYGTTGGLDTVAVRMPRHPVALAL 129
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ P+A SAN S PS T + ++ L ++ +++DGG P G ST++DL+
Sbjct: 130 IRESGVPIAAPSANISGRPSPTTAGDVYEDLAGRVDIILDGG----PCEVGVESTVLDLT 185
Query: 209 EENVYSIVRKGVCYDKILKILHKYHL 234
E + GV +++ +L + L
Sbjct: 186 GEVPVILRPGGVTREELEAVLGRVEL 211
>gi|358466467|ref|ZP_09176289.1| hypothetical protein HMPREF9093_00759 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069023|gb|EHI78979.1| hypothetical protein HMPREF9093_00759 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 217
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 10/214 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ +I ++D K LA + LKKG ++ PTDT+YGLA TN ++IN +Y K R +
Sbjct: 6 KIDNISDISDDKWTELANE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFSS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELL----PGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + E+L +L PG +T++ R +H+ + +
Sbjct: 65 PLIALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKQHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E + NE + + S++ +++DGG E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNELSEAIKSRVDILVDGGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG-VCYDKILKILHK 231
STI+DL+ + V I+RKG + D+I KI+ +
Sbjct: 185 --ASTIIDLTSD-VPKILRKGAISTDEITKIIGR 215
>gi|406912274|gb|EKD51918.1| hypothetical protein ACD_62C00158G0005 [uncultured bacterium]
Length = 198
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 11/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A Q ++KG V+A+PTDT+YGLA +I +++IKKR NKPL I ++ T +
Sbjct: 8 AVQKIEKGRVIAVPTDTVYGLAASIRFPDSIQNIFDIKKRPFNKPLVIQIAATTQLDSLV 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
F L PGP+T+VF + +++ ++ V +RI D + LR+L+ L P
Sbjct: 68 TDIPQIFHQLKSFWPGPLTMVFEANIQNIPQKIRAGTNTVGIRIADCQLLRELI-LQTGP 126
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
LA+ SAN S+ PS E + + + V+DGG P G ST+V L N I+
Sbjct: 127 LAIPSANVSDFPSAKTRKEVEGYFGKEFPVLDGG----PCSLGKESTVVSLV-GNELKIL 181
Query: 217 RKGVCYDKILKILHKYH 233
RKGV ++ ++L K++
Sbjct: 182 RKGVITEE--ELLKKHN 196
>gi|404496457|ref|YP_006720563.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
metallireducens GS-15]
gi|418064817|ref|ZP_12702193.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter metallireducens RCH3]
gi|78194060|gb|ABB31827.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
metallireducens GS-15]
gi|373563090|gb|EHP89291.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter metallireducens RCH3]
Length = 203
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 9/167 (5%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ + LK G ++A PTDT YG+ C + K I +Y +K+R+ KP + S+++
Sbjct: 12 PRLVAQVVKILKDGGIIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSDLS 71
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
++ ++A ++++L LPGP T V + + + L V +RIPD++ L+K
Sbjct: 72 EVARYAKVSNYAYKMLKRHLPGPYTFVLDATSIVPDLLVTKQKTVGIRIPDNRICLSLVK 131
Query: 154 LMDSPLALTSANESNE-----PSTLCINEFQKLWSQLSVVIDGGIIS 195
+ P+ TSAN S E P + +N + QL VV+DGGI+S
Sbjct: 132 ELGHPIITTSANLSGEEPIGDPYLVDLN----MGKQLDVVVDGGILS 174
>gi|448364266|ref|ZP_21552860.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba asiatica DSM 12278]
gi|445645154|gb|ELY98161.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba asiatica DSM 12278]
Length = 194
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL DA +S A+ +++ K RD +KP+++ V + ++
Sbjct: 7 AADAVRDGELVVYPTETVYGLGADALDSDAVGRVFDAKGRDRSKPISLAVPSVPAALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ E + L +V VR+PDH L + ++P+
Sbjct: 67 RATERERRFMATFLPGPVTVLCRSREPVPGVLTAGRDRVGVRVPDHPIALALCERAETPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++E +L + +DGG E S++VD + E ++ R+
Sbjct: 127 TATSANVSGRGSVRRLDELDPELREATAATLDGGETPGTE---SSVVDPTSETIH---RR 180
Query: 219 GVCYDKI 225
G D I
Sbjct: 181 GALADDI 187
>gi|451940384|ref|YP_007461022.1| translation factor, Sua5/YciO/YrdC family [Bartonella australis
Aust/NH1]
gi|451899771|gb|AGF74234.1| translation factor, Sua5/YciO/YrdC family [Bartonella australis
Aust/NH1]
Length = 320
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 22/201 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LKKG +VALPT+T+YGLA DATN KA+ ++ +KKR PL + V+ + ++
Sbjct: 14 AIAILKKGRLVALPTETVYGLAGDATNGKAVASIFSLKKRPQFNPLIVHVNGVIMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNV--------TKVAVRIPDHKFLRQL 151
+ +S L+ PGP+T+V L L++N N+ +AVR P F ++
Sbjct: 74 EIDLLSRRLMEAFWPGPLTLV------LPLKVNHNIHPLTTAGLNTLAVRFPSGGFA-EV 126
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ D PLA SAN+S S T + L S + ++IDGG+ S G STI+ +
Sbjct: 127 IRYFDRPLAAPSANQSGRLSPTSAESVLSSLGSLVPLIIDGGVSS----IGIESTIIKVC 182
Query: 209 EENVYSIVRKGVCYDKILKIL 229
E+ Y + GV ++I +++
Sbjct: 183 NESAYLLRPGGVATEEIEEVM 203
>gi|385806102|ref|YP_005842500.1| Sua5/YciO/YrdC/YwlC family protein [Fervidicoccus fontis Kam940]
gi|383795965|gb|AFH43048.1| Sua5/YciO/YrdC/YwlC family protein [Fervidicoccus fontis Kam940]
Length = 355
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +A+ +K G +VA PT+T+YGL +A N A +Y++K R + P+ + +S I
Sbjct: 13 DAEKIKIASSIIKNGGLVAFPTETVYGLGANALNEHATRKIYQVKGRPSDNPIIVHISSI 72
Query: 93 TDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ K A + ++++L+ +L PGP+T++ RS + + + VAVR+P H + L
Sbjct: 73 EMLEKIAVNVPEIAYKLIKKLWPGPLTLILKRSNAVPKLVTGGLDTVAVRMPAHPIAQNL 132
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVD-L 207
++ + P+A SAN S +PS T + + L+ ++ +IDGG + +G ST+++ L
Sbjct: 133 IEQAELPIAAPSANISGKPSPTRAEHVIKDLYGKIEAIIDGGEV----LYGVESTVINVL 188
Query: 208 SEE------NVYSIVRKGVCYDKILKILH 230
SEE YS+ D+ +KI H
Sbjct: 189 SEEPILLRPGAYSVEIIESIIDRKVKIPH 217
>gi|289581382|ref|YP_003479848.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
gi|448283202|ref|ZP_21474480.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
gi|289530935|gb|ADD05286.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
gi|445574670|gb|ELY29165.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
Length = 196
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G +V PT+T+YGL DA + A+ ++E+K RD +KP+++ V + +
Sbjct: 9 AADAICDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLAVPSVPAAFDYV 68
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T +A LPGPVT++ R E++ L +V +R+PD L + +P+
Sbjct: 69 RTTERERRFMATFLPGPVTVLCQRLENVPDVLTAGEDRVGIRVPDQPTALALCERAGTPI 128
Query: 160 ALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + E L ++ V+DGG E ST+VD S E ++ R+
Sbjct: 129 TATSANVSGAGSVRRLEELDDGLRESVAAVLDGGETPGTE---STVVDPSSETIH---RR 182
Query: 219 GVCYDKI 225
G D+I
Sbjct: 183 GALADEI 189
>gi|154249397|ref|YP_001410222.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153333|gb|ABS60565.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum
Rt17-B1]
Length = 331
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 8/174 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK G +VA PT+T+YGL ATN +A+ ++++K R + PL + VS + +I A
Sbjct: 23 ACEVLKSGGLVAFPTETVYGLGATATNPEAVKKIFQVKGRPADNPLIVHVSSVDEIENIA 82
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+++ ++ PGP+T V + E++ E+ + V VRIP H ++L+ P+
Sbjct: 83 YLSEKYIDIIKKVTPGPITFVLKKKENIPSEVTAGLETVGVRIPAHPVAQKLINC-SGPI 141
Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
A SAN S +PS N + L + +ID G + FG STIVDL+++
Sbjct: 142 AAPSANRSGKPSPTDANAVIEDLNGLVECIIDAGECA----FGIESTIVDLTKD 191
>gi|212224235|ref|YP_002307471.1| putative translation factor [Thermococcus onnurineus NA1]
gi|212009192|gb|ACJ16574.1| Hypothetical translation factor [Thermococcus onnurineus NA1]
Length = 339
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +AA+ + +G +VA PT+T+YGL DA N +A ++E K R + PL + +++
Sbjct: 12 DGRKIKIAAKFILEGKLVAFPTETVYGLGADALNEEAARRIFEAKGRPADNPLIVHIADF 71
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
D+ K A LLAE PGP+T+V + E + + VAVR+P H L
Sbjct: 72 DDLKKLAREIPDEARLLAEKFWPGPLTVVLPKKEEVPTVTTGGLDTVAVRMPAHPIALAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ +P+A SAN S +PS TL + + ++ +IDGG + G ST+VDLS
Sbjct: 132 IR-ASTPIAAPSANISGKPSPTLAEHVIDDFYGKIECIIDGG----ETKIGVESTVVDLS 186
Query: 209 EENVYSIVRKGVCYDKILKILHKYHL 234
E + G+ ++I K++ + +
Sbjct: 187 GEKPTLLRPGGLPLEEIEKVIGEVEI 212
>gi|373488667|ref|ZP_09579331.1| translation factor SUA5 [Holophaga foetida DSM 6591]
gi|372005612|gb|EHP06248.1| translation factor SUA5 [Holophaga foetida DSM 6591]
Length = 201
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-D 100
+ L + V+A PTDTLYGL C + KA++ + +K RD KP++I +++ + ++A
Sbjct: 20 EILTRDGVIAYPTDTLYGLGCLISRKKAVDRILTLKHRDPRKPMSILCADMEMLCRYARH 79
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
T +F LL +LLPGP T++ S + L T V +RIPD+ F + KL P+
Sbjct: 80 METSTFRLLKQLLPGPYTVILPASREVPRYLQAKQT-VGLRIPDNPFCTAITKLAGEPIL 138
Query: 161 LTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN EP L E Q +L L +V+D G P STI+DL+ + ++R+G
Sbjct: 139 STSANLYGEPPLLSSWEIQEELGHALDMVVDCG---EPVGESSTILDLTGDEPL-VLRQG 194
Query: 220 V 220
Sbjct: 195 A 195
>gi|388458031|ref|ZP_10140326.1| translation initiation protein [Fluoribacter dumoffii Tex-KL]
Length = 321
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 113/208 (54%), Gaps = 6/208 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G VA+PT+T+YGLA N KAI ++ +K R +N PL + V++ D+ +W
Sbjct: 11 AIHDLQEGKPVAIPTETVYGLAAPVNNEKAIRAVFAMKNRPLNHPLIVHVAKNWDLTQWV 70
Query: 100 -DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D + +L+ + PGP+T+VF+ + + +N + T VAVR P H ++LL + +
Sbjct: 71 KDIPEYAQQLIEKFWPGPLTLVFHCKVDQINPLITGGQTTVAVRCPAHPLTQELLMKLGT 130
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PL SAN + S T + + Q ++DGG + STI+D + Y I+
Sbjct: 131 PLVAPSANPFGKVSPTTAQHVSESFPDQELTILDGGRCT--VGIESTILDATHAKNYQIL 188
Query: 217 RKGVCYDK-ILKILHKYHLVEKNTFPIP 243
R G+ +K I +++ L ++NT +P
Sbjct: 189 RHGLIDEKTIAEVITTPSLHQENTLRVP 216
>gi|227486773|ref|ZP_03917089.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC
51172]
gi|227235243|gb|EEI85258.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC
51172]
Length = 344
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D A AA +K G +VA PT+T+YGL D N +A +++ K R + PL + +S I
Sbjct: 14 DTDAIKKAANFIKSGQLVAFPTETVYGLGADGINDEACRKIFKAKGRPSDNPLILHISHI 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ + + T L EL PGP+T++F +S+ + + VA+R P + R L+
Sbjct: 74 SMLDNLVEEITDKHRKLFELWPGPMTLIFKKSKSIPDAVTAGGDTVAIRFPSDQIARALI 133
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
D+P+A SAN S PS T + +Q + + V+IDGG + ST++DLS +
Sbjct: 134 TEADTPIAAPSANISGRPSPTNASDVYQDMDGIIPVIIDGG--ESNIGIESTVIDLSGDE 191
Query: 212 VYSIVRKGVCYDKILK 227
I+R G + LK
Sbjct: 192 PI-ILRPGFYTYEFLK 206
>gi|146296540|ref|YP_001180311.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410116|gb|ABP67120.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 348
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 108/192 (56%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA PT+T+YGL +A +A++ ++ K R + PL + +S + A
Sbjct: 19 AAQILKEGGLVAFPTETVYGLGANALLKEAVDKIFVAKGRPQDNPLIVHISSKKMLDMCA 78
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T ++L+ + PGP+TIV + E + + + V +R+P++K +L++L P
Sbjct: 79 KVTDERVYKLIEKFWPGPLTIVLPKKECIPDNVTAGLNTVGIRMPNNKIALELIELAGVP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T + + L+ ++ V+IDGG S FG ST++DLS Y I
Sbjct: 139 VAAPSANVSGKPSPTEAQHVIEDLFGKVDVIIDGGKCS----FGLESTVIDLSSSKPY-I 193
Query: 216 VRKGVCYDKILK 227
+R G ILK
Sbjct: 194 LRPGAVPFSILK 205
>gi|326800728|ref|YP_004318547.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
gi|326551492|gb|ADZ79877.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
Length = 235
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 15/184 (8%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAICVSEITDIPKWAD-T 101
LKKG ++ PTDT+YG+ CD TN KAI L I+ K L+ ++TDI ++
Sbjct: 51 LKKGGIIIYPTDTVYGIGCDITNQKAIETLCRIRGIKPEKANLSFICYDLTDIAQYTKPI 110
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
T +F LL + LPGP T +FN S + ++ N V +R+PD+ R++++ + +P+
Sbjct: 111 DTATFRLLKKSLPGPFTYIFNASNQVPKLMSSNKKTVGIRVPDNNIAREIVRQLGNPIVS 170
Query: 162 TSANESNE------PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S ++ +E L +FQ L + +VIDGG N ST+VD + + +
Sbjct: 171 ASIHDEDEILEYSTDPELIHEKFQNL---VDLVIDGGYGGNE---ASTVVDCTSGE-FDV 223
Query: 216 VRKG 219
+R+G
Sbjct: 224 IRQG 227
>gi|374340390|ref|YP_005097126.1| Sua5/YciO/YrdC/YwlC family protein [Marinitoga piezophila KA3]
gi|372101924|gb|AEX85828.1| Sua5/YciO/YrdC/YwlC family protein [Marinitoga piezophila KA3]
Length = 341
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 9/201 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +K G +V PT+T+YGL +A + A+ ++ K R + PL S+I DI +
Sbjct: 21 AAEYIKAGKLVVFPTETVYGLGANALDETAVKNIFIAKGRPSDNPLIAHFSDIKDILDFV 80
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ FE + L PGP+T V + +++ + VAVRIP H R L+K ++P+
Sbjct: 81 EIDKNLFEKIKILTPGPITFVLKKKKNIPDIVTAGRNTVAVRIPAHPIARALIKESNTPI 140
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
A SAN S +PS T + + L ++ ++I+GG + FG ST++DL+E+ + +++
Sbjct: 141 AAPSANLSGKPSPTDPQHVIEDLNGRVDIIINGGKVD----FGLESTVIDLTEK-IPTLL 195
Query: 217 RKG-VCYDKILKILHKYHLVE 236
R G + +K+ +I K + E
Sbjct: 196 RPGPITPEKLREIFGKIEIPE 216
>gi|296111567|ref|YP_003621949.1| SUA5 family translation factor () [Leuconostoc kimchii IMSNU 11154]
gi|339491164|ref|YP_004705669.1| SUA5 family translation factor [Leuconostoc sp. C2]
gi|295833099|gb|ADG40980.1| SUA5 family translation factor (putative) [Leuconostoc kimchii
IMSNU 11154]
gi|338852836|gb|AEJ31046.1| SUA5 family translation factor (putative) [Leuconostoc sp. C2]
Length = 337
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M + + TD +A A+ LK G VVA PT+T+YGL DATN A+ ++ K R + P
Sbjct: 1 MKTTIFTTDQQALAKASALLKAGEVVAFPTETVYGLGADATNDLAVKKVFTAKGRPADNP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIP 143
L + V++++ + + + +L+ + PG +TI+ + +++ + + VA R+P
Sbjct: 61 LIMTVADVSQLEAYVTISEAAQKLMTQFWPGSLTIILPIITGQVSMLVTGGLQTVAFRLP 120
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG-- 201
+ R+L+++ PL SAN S +PS Q +W + I G + P G
Sbjct: 121 ANDVTRELIRMTGVPLVGPSANLSGKPSPTTA---QHVWHDMQGKISGIVDDGPTMVGVE 177
Query: 202 STIVDLSEENVYSIVRKGVCYDKILK 227
ST+VD+S V +I+R G L+
Sbjct: 178 STVVDMSAA-VPTILRPGAVTQNQLQ 202
>gi|312142774|ref|YP_003994220.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium hydrogeniformans]
gi|311903425|gb|ADQ13866.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium hydrogeniformans]
Length = 350
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 113/209 (54%), Gaps = 6/209 (2%)
Query: 25 MCSIVKVT-DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
I+K D +A AA+ L KG +VA+PT+T+YGLA DA N +A+ ++E K R +
Sbjct: 4 QTEIIKANNDDQAVEKAAELLHKGELVAIPTETVYGLAADALNPEAVKRIFEAKGRPQDN 63
Query: 84 PLAICVSEITDIPKW--ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVR 141
PL I + D+ K + +L+ + PGP+T++F +S + E + + VAVR
Sbjct: 64 PLIIHIGAQKDLEKLIAEKVSKRAQKLIDKYWPGPLTLIFKKSSLVPAETSAGLDTVAVR 123
Query: 142 IPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERF 200
+P H +LL+ LA SAN S PS T + + L +++ +++DGG S
Sbjct: 124 MPSHPVTIKLLQKSGLVLAAPSANTSGYPSPTRAEHVYADLKTKIPLILDGG--SCEVGV 181
Query: 201 GSTIVDLSEENVYSIVRKGVCYDKILKIL 229
ST++DLS++ + G+ +++ + L
Sbjct: 182 ESTVIDLSQKEAVVLRPGGISREELAEFL 210
>gi|15791118|ref|NP_280942.1| hypothetical protein VNG2312C [Halobacterium sp. NRC-1]
gi|169236871|ref|YP_001690071.1| hypothetical protein OE4244F [Halobacterium salinarum R1]
gi|10581723|gb|AAG20422.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727937|emb|CAP14725.1| tRNA threonylcarbamoyladenosine biosynthesis protein YrdC
[Halobacterium salinarum R1]
Length = 198
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Query: 45 KKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTV 104
++G +V PT+T+YGLA DA + AI +E K+R KPL+ ++ +
Sbjct: 15 REGGLVVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSFAFPDVEAAVEHVAVGET 74
Query: 105 SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+AE LPGPVT+V + + + L +V VR+PD + LL+ + +PL TSA
Sbjct: 75 ERAFMAEFLPGPVTVVCEKRDSVPDVLTGGRDRVGVRVPDSEVAVALLERV-APLTATSA 133
Query: 165 NESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD 223
N S EPS + +++ V+D G +P GST+VD++ I+R G D
Sbjct: 134 NVSGEPSVTNPAALDPAFRARVDAVVDAG--ESPGGTGSTVVDVAR---GEILRAGAVGD 188
Query: 224 KILKILHKY 232
+ + L ++
Sbjct: 189 AVREWLAEH 197
>gi|311032025|ref|ZP_07710115.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13]
gi|311033339|ref|ZP_07711429.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13]
Length = 350
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+ VVA PT+T+YGL +A + +A+ ++E K R + PL + +S++ + +
Sbjct: 24 AAGLLKENEVVAFPTETVYGLGANALSDQAVLKIFEAKGRPSDNPLIVHISKLEQLAELV 83
Query: 100 DTHTVS-FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D S +L+ PGP+T+V + E ++ + + +AVR+PDH R L+++ P
Sbjct: 84 DNVPESAHKLMEAFWPGPLTLVLTKKEGVSQYVTAGLETLAVRMPDHSVARALIEISGLP 143
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S +PS ++ L +++ ++DGG ST+VD + E +
Sbjct: 144 LAAPSANLSGKPSPTTAKHVEEDLIHRIAGIVDGGATGV--GLESTVVDCTAETPMILRP 201
Query: 218 KGVCYDKILKILHK 231
GV +++ K++ K
Sbjct: 202 GGVTKEELEKVVGK 215
>gi|448367337|ref|ZP_21555103.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba aegyptia DSM 13077]
gi|445652956|gb|ELZ05829.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba aegyptia DSM 13077]
Length = 194
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL DA NS A++ +++ K RD +KP+++ V + ++
Sbjct: 7 AADAIRDGELVVYPTETVYGLGADALNSDAVDRVFDAKGRDHSKPISLAVPSVPAALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ E + L +V VR+PDH L + ++P+
Sbjct: 67 RATERERRFMATFLPGPVTVLCRAREPVPEVLTAGRDRVGVRVPDHPTALALCERAETPI 126
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVV-IDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++E + + + +DGG E S++VD + E ++ R+
Sbjct: 127 TATSANVSGRGSVRRLDELDPEFREATAATLDGGETPGTE---SSVVDPTNETIH---RR 180
Query: 219 GVCYDKI 225
G D I
Sbjct: 181 GTLADDI 187
>gi|448342310|ref|ZP_21531262.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema gari JCM 14663]
gi|445626301|gb|ELY79650.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema gari JCM 14663]
Length = 195
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL A + + ++E+K RD KPL+ V + ++
Sbjct: 7 AADAIESGALVVYPTETVYGLGGAALEPEPVERIFEVKGRDRTKPLSFAVPSVPSALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R + EL +V VRIPD+ L + +P+
Sbjct: 67 RATDRERRFMATFLPGPVTVLCRRRAAVPDELTAGRERVGVRIPDNDLALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S +++ ++ +VV+DGG ST+VD+S ++ R+
Sbjct: 127 TATSANVSGRESARRLDDLDPEIREAAAVVLDGGRTDGGTE--STVVDVSSGTIH---RR 181
Query: 219 GVCYDKILKILHKY 232
G D+I L ++
Sbjct: 182 GAQADEIDAWLERH 195
>gi|452964093|gb|EME69141.1| putative translation factor [Magnetospirillum sp. SO-1]
Length = 323
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 26 CSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPL 85
+++ DP A A + L +G +VA PT+T+YGL DAT+ A+ +++ K R PL
Sbjct: 6 SAMILSADPAAIARAGRVLAEGGLVAFPTETVYGLGGDATSDAAVAAIFKAKGRPSFNPL 65
Query: 86 AICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNR--SEHLNLELNPNVTKVAVRIP 143
VS + + + + L PGP+T+V R ++L + + VAVR+P
Sbjct: 66 IAHVSGLDQAAALVEFNGDAHRLAERFWPGPLTLVLKRRPDSPVSLLASAGLDSVAVRMP 125
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG- 201
DH L++ PLA SAN S S T + Q L ++++V+DGG P R G
Sbjct: 126 DHPVALALIRAAGRPLAAPSANRSGRVSPTRAEHVAQCLEGRIAMVLDGG----PCRVGV 181
Query: 202 -STIVDLSEENVYSIVRKGVCYDKILKIL 229
ST++DLSE+ + GV +++ +L
Sbjct: 182 ESTVLDLSEQPPTLLRPGGVTAEELEAVL 210
>gi|254427759|ref|ZP_05041466.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
gi|196193928|gb|EDX88887.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
Length = 182
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L AAQ ++ G V+A PT+++YGL CD N A+ L IK+R V+K L + + +
Sbjct: 6 LSAAQIIQAGGVIAYPTESVYGLGCDPFNQDAVMQLLAIKQRPVSKGLILIGETLAQLAP 65
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + L + P PVT + +EHL + KVAVR+PDH RQL L
Sbjct: 66 YLRLNDQQAARLQQQWPAPVTYLVEANEHLPAWVRGQHRKVAVRVPDHPLARQLCNLAGQ 125
Query: 158 PLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGI--ISNPERFGSTIVDLSEENV 212
P+ TSAN S P+ N +Q +L QL ++ G S P STI+DL +
Sbjct: 126 PIISTSANISGRPAA--CNRYQVARQLGDQLDFIVSGACDRASKP----STIIDLESGRI 179
>gi|222055790|ref|YP_002538152.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter daltonii FRC-32]
gi|221565079|gb|ACM21051.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter daltonii FRC-32]
Length = 202
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A + L+KG VVA PTDT YG+ C N K I +Y IK+RD KP + ++++
Sbjct: 12 PRLLAQAVEILEKGGVVAYPTDTTYGIGCSIFNKKGIERIYAIKQRDRKKPFSFICADLS 71
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
DI +A +F+++ LPGP T + + + + V +RIP +K + K
Sbjct: 72 DIAHYARVSNYAFKVMKRFLPGPYTFILDATSVVPDLCMTKQKTVGIRIPANKICLAITK 131
Query: 154 LMDSPLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
L+ P+ TSAN S E + FQ L + + +DGG+++ S++V L +
Sbjct: 132 LLGHPIITTSANLSGEDPIG--DPFQVENTLGKLIDLTVDGGVLTADV---SSVVSLIGD 186
Query: 211 NVYSIVRKGV 220
++RKGV
Sbjct: 187 RP-EVLRKGV 195
>gi|443320004|ref|ZP_21049138.1| Sua5/YciO/YrdC/YwlC family protein [Gloeocapsa sp. PCC 73106]
gi|442790280|gb|ELR99879.1| Sua5/YciO/YrdC/YwlC family protein [Gloeocapsa sp. PCC 73106]
Length = 215
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 7/203 (3%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ + LK G V+ PTDT+Y + CD + AI + EIK+ +KPL C S ++
Sbjct: 14 PRRIAEISNALKDGAVMLYPTDTVYAIGCDLQSKSAIKRVREIKQLSNDKPLTFCCSSLS 73
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLL 152
+I ++A ++ ++ L+PGP T + ++ + L +NP +R+PDH + LL
Sbjct: 74 NISEYALVTDQAYRIMKHLIPGPYTFLLPATKLVPKLVMNPKRKTSGIRVPDHVICQALL 133
Query: 153 KLMDSPLALTSANESNEPSTLCI--NEFQKLWSQLSVVIDGGIISNPERFG---STIVDL 207
+D+P+ TSA+ + L E +L+ L ++D II + G STI+DL
Sbjct: 134 SSLDNPIISTSAHLPDIDGKLPTLGREKIRLFDNLDNLVD-MIIEDDSESGSEFSTIIDL 192
Query: 208 SEENVYSIVRKGVCYDKILKILH 230
S+ IVR+G+ ++ + + L+
Sbjct: 193 SDGEAPKIVRQGLNWESVKRWLY 215
>gi|71394063|gb|AAZ32102.1| putative translation factor [uncultured euryarchaeote Alv-FOS5]
Length = 342
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 106/196 (54%), Gaps = 8/196 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL DA N++A+ ++E K R + PL + ++ I A
Sbjct: 22 AALAIREGKLVAFPTETVYGLGADALNAEAVKRIFEAKGRPQDNPLIVHIAHEEGIYNLA 81
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + +L+ PGP+T++ +S + + VA+R+P H R+L+ L + P
Sbjct: 82 REVPRKAKDLIDRFWPGPLTLILKKSPIIPDRTTAGLDTVAIRMPSHPIARKLILLSERP 141
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T + L+ ++ +IDGG P G ST++DL+ + +
Sbjct: 142 IAAPSANTSGKPSPTTGKHVIDDLYGKVEYIIDGG----PTNVGLESTVIDLTTDPPMLL 197
Query: 216 VRKGVCYDKILKILHK 231
GV ++ ++L K
Sbjct: 198 RPGGVTLGQLEEVLGK 213
>gi|419719442|ref|ZP_14246721.1| Sua5/YciO/YrdC/YwlC family protein [Lachnoanaerobaculum saburreum
F0468]
gi|383304355|gb|EIC95761.1| Sua5/YciO/YrdC/YwlC family protein [Lachnoanaerobaculum saburreum
F0468]
Length = 366
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 9/187 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA +K G +VA PT+T+YGL DA +A +Y K R + PL + +SEI ++
Sbjct: 32 LAADIIKSGGLVAFPTETVYGLGADAFMEEAAKKIYAAKGRPSDNPLIVHISEIREVDDI 91
Query: 99 AD-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ + + L + PGP+T+V + + + + VAVR+PD+ R ++K
Sbjct: 92 AECIPDIFYSLAKKYWPGPMTVVLKKRNIVPDATSGGLDTVAVRLPDNNIARAIIKESGV 151
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T I+ + + ++ ++IDGG + G STI+DL+ ++ +
Sbjct: 152 PIAAPSANTSGRPSPTKAIHVLEDMNGKIDMIIDGGTVG----IGVESTIIDLT-SDIPT 206
Query: 215 IVRKGVC 221
++R G
Sbjct: 207 LLRPGAV 213
>gi|339482376|ref|YP_004694162.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. Is79A3]
gi|338804521|gb|AEJ00763.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. Is79A3]
Length = 347
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 6/204 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ L G VA PT+T+YGL D TN AIN +Y+IK+R ++ PL + + +I+D+ WA
Sbjct: 24 AAQVLNAGGTVAFPTETVYGLGADVTNPDAINKIYKIKQRPIDHPLIVHIGDISDLHYWA 83
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM--D 156
+ +++L PGP+T++ RS H+ + V +RIP H LL + +
Sbjct: 84 EEIPDSAWKLANHFWPGPLTLILQRSRHIPDSVTGGQDTVGLRIPAHPVALALLAALGPE 143
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
LA SAN S T+ + ++L S + +++DGG STI+ +++ +
Sbjct: 144 KALAAPSANRFGRISPTIAAHVREELGSAVDMILDGGACE--VGLESTIISFHDQSPMIL 201
Query: 216 VRKGVCYDKILKILHKYHLVEKNT 239
G+ + +L ++ NT
Sbjct: 202 RPGGIAVSALESVLEDPVILAHNT 225
>gi|448481828|ref|ZP_21605143.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum arcis JCM 13916]
gi|445821527|gb|EMA71316.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum arcis JCM 13916]
Length = 209
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G +V PT+T+YGL DA ++ A+ ++E+K RD + PL++ V+ + D ++A
Sbjct: 19 AAAAVDRGELVVYPTETVYGLGADALDADAVERVFELKGRDRSNPLSLGVASVDDALRYA 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ LPGPVT+V R + + L +V +R+PDH R LL PL
Sbjct: 79 RPTERAVAFARAFLPGPVTVVVERGDPVPDALTAGRDRVGIRVPDHDLARALLDET-GPL 137
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + ++ ++ VID G E ST+VD +I R+
Sbjct: 138 TATSANVSGTGSVTDPADLDDRIRGGVAAVIDDGEAPGTE---STVVD---PEAGTIHRR 191
Query: 219 GVCYDKI 225
G I
Sbjct: 192 GAMAGAI 198
>gi|253701566|ref|YP_003022755.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21]
gi|251776416|gb|ACT18997.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21]
Length = 202
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Query: 33 DPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+ L+A + LK G VVA PTDT YG+ C + K I +Y++K+RD KP + S
Sbjct: 9 NPQPRLVAKVVEVLKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICS 68
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+I++I ++A +F+ L LLPGP T V + + + V +R+PD+
Sbjct: 69 DISEISRYARVSNYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRMPDNNICLA 128
Query: 151 LLKLMDSPLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGIISNPERFGSTIVDL 207
++K + P+ TSAN S E N +Q +L L +V+DGG +S +++
Sbjct: 129 IVKELGHPIVTTSANLSGEDPIG--NPWQVEHELGKLLDLVVDGGDLSADVSSVVSLIGD 186
Query: 208 SEENVYSIVRKGV 220
S E ++RKGV
Sbjct: 187 SPE----LLRKGV 195
>gi|262066500|ref|ZP_06026112.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
ATCC 33693]
gi|291379804|gb|EFE87322.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
ATCC 33693]
Length = 217
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 10/214 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ +I ++D K LA++ LKKG ++ PTDT+YGLA TN ++IN +Y K R
Sbjct: 6 KIDNISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELL----PGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + E+L +L PG +T++ R +H+ + +
Sbjct: 65 PLIALLSSVDKVEEVATISDENREILEKLAHTFWPGALTVILKRKQHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E + NE + + S++ +++DGG E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNELSEAIKSRVDILVDGGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG-VCYDKILKILHK 231
STI+DL+ + V I+R G + D+I KI+ +
Sbjct: 185 --ASTIIDLTSD-VPKILRNGAISTDEITKIIGR 215
>gi|402302551|ref|ZP_10821662.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Selenomonas sp. FOBRC9]
gi|400380369|gb|EJP33188.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Selenomonas sp. FOBRC9]
Length = 355
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ ++ G +VA PT+T+YGL + ++ A +Y K R + PL + +++++ A
Sbjct: 17 AAQMIRDGALVAFPTETVYGLGANGLDAAACARIYAAKGRPSDNPLILHIADLSMAADAA 76
Query: 100 DTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T T + LL PGP+T++ ++ H+ + ++ V VR PDH R L++ P
Sbjct: 77 RTVTPAAAHLLTAFAPGPITVILPKAAHVPDIVTGGLSTVGVRCPDHDIARALIRAAGVP 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T L ++ ++DGG R+G STIVD +E+ + ++
Sbjct: 137 VAAPSANTSGRPSPTTAAMVADDLAGRIPCILDGGAC----RWGVESTIVDCTEDGIVTV 192
Query: 216 VRKGV 220
+R G
Sbjct: 193 LRPGA 197
>gi|302380242|ref|ZP_07268714.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
ACS-171-V-Col3]
gi|302312025|gb|EFK94034.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
ACS-171-V-Col3]
Length = 342
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 28/223 (12%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV----- 89
KA AA+ +K G VVA PT+T+YGL + + +A ++++K+R + PL + V
Sbjct: 15 KALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDM 74
Query: 90 -----SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPD 144
SEIT+ K +L+ L PGP+TI+F +S+ +N ++ VA+R P
Sbjct: 75 VKNLSSEITEDQK---------KLMDNLWPGPLTIIFKKSDKVNDVVSCGGDTVAIRNPS 125
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGST 203
+ R L+ P+A SAN+S PS T + + + ++ +++DGG S ST
Sbjct: 126 DEIARFLIDKSGCPIAAPSANKSGRPSPTNAQDVYSDMQDEIEMILDGG--SCNIGIEST 183
Query: 204 IVDLSEENVYSIVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
+VDL+E+ Y+I+R G + L ++++ L++ NT P
Sbjct: 184 VVDLTEK-PYTILRPGFYIKEDLEEYLDEVVYDKSLIDSNTIP 225
>gi|448351319|ref|ZP_21540126.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba taiwanensis DSM
12281]
gi|445634273|gb|ELY87456.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba taiwanensis DSM
12281]
Length = 194
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL DA +S A++ +++ K RD +KP+++ V + ++
Sbjct: 7 AADAIRDGELVVYPTETVYGLGADALDSDAVDRVFDAKGRDRSKPISLAVPSVPAALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ E + L +V VR+PDH L + ++P+
Sbjct: 67 RATERERRFMATFLPGPVTVLCRARELVPEVLTAGRDRVGVRVPDHPTALALCERAETPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++E +L + +DGG E S++VD + E ++ R+
Sbjct: 127 TATSANVSGRGSVRRLDELDPELRETTAATLDGGETPGTE---SSVVDPASETIH---RR 180
Query: 219 GVCYDKI 225
G D I
Sbjct: 181 GALADDI 187
>gi|163867863|ref|YP_001609067.1| hypothetical protein Btr_0635 [Bartonella tribocorum CIP 105476]
gi|161017514|emb|CAK01072.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 320
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +A++ ++ KKR PL V+ I ++
Sbjct: 14 AITLLEQGRLVALPTETVYGLAGDATNGRALSSIFSTKKRPQFNPLIAHVNGIEMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T+V + N+ + +A+R PD +F ++++ +
Sbjct: 74 EIDFLSRRLMEVFWPGPLTLVLPLKKQHNIHPLTTAGLDTLAIRFPDSRFA-EIVQCLGR 132
Query: 158 PLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S F L + +++DGG P + G STI+ + E +Y
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVFTSLGESVPLILDGG----PAKIGLESTIIKICGERIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ DKI +++ +
Sbjct: 189 LRPGGLAADKIEEVVGR 205
>gi|260437528|ref|ZP_05791344.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM
2876]
gi|292810161|gb|EFF69366.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM
2876]
Length = 351
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ + +G +VA PT+T+YGL D+ + A +Y K R + PL + +SE DI K +
Sbjct: 22 AAEIISRGGLVAFPTETVYGLGGDSFDPAAAEKIYAAKGRPSDNPLIVHISEFDDIYKLS 81
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++LA+ PGP+T++ +++ + + + + VAVR+P HK R+L+K +
Sbjct: 82 DEVPEIAKVLADKFWPGPLTMIVKKNKSVPVTVTGGLDTVAVRLPSHKVARKLIKESGTF 141
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T + L ++ ++ID G I STIVDL+ E+V I+R
Sbjct: 142 IAAPSANISGRPSPTTAKHVIDDLNGRIDMIIDDGSIEI--GLESTIVDLT-EDVPVILR 198
Query: 218 KG-VCYDKILKILHKYHL 234
G V ++ + + + K L
Sbjct: 199 PGYVTFEMLEETVGKVRL 216
>gi|319898590|ref|YP_004158683.1| hypothetical protein BARCL_0418 [Bartonella clarridgeiae 73]
gi|319402554|emb|CBI76099.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 320
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DAT+ KA+ ++ K R PL + VS+I +
Sbjct: 14 AVTILQQGKLVALPTETVYGLAGDATDGKAVASIFSTKGRPPFNPLIVHVSDIVMAECYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T+V H N+ + +AVR P F ++++
Sbjct: 74 EIDLLSRRLMEAFWPGPLTVVLPLKVHHNIHPLTTAGLNTLAVRFPRGGFA-EIVRHFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S + S T + F L + + ++IDGG + G STI+ + +ENVY
Sbjct: 133 PLAAPSANQSGKLSPTSATSVFTSLGTSVPLIIDGG----DSKIGLESTIIKICDENVYI 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I ++ K
Sbjct: 189 LRPGGLAIEEIERVAKK 205
>gi|260587375|ref|ZP_05853288.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583]
gi|331083675|ref|ZP_08332786.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542242|gb|EEX22811.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583]
gi|330403886|gb|EGG83438.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 349
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK G +VA PT+T+YGL D N+++ +Y K R + PL I ++++ + K
Sbjct: 21 AGEILKNGGLVAFPTETVYGLGGDGLNARSSEKIYTAKGRPSDNPLIIHIADMESLNKIV 80
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+LLAE PGP+T++F +S + E + VAVR+P+H L++
Sbjct: 81 RQIPEKAKLLAEKFWPGPLTMIFQKSSEVPYETTGGLESVAVRMPNHPVALALIQAGGGY 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T + + L ++ +++DGG + STIVD + EN+ I+R
Sbjct: 141 IAAPSANTSGRPSPTKAEHVAEDLSGRIDMIVDGGDVGI--GLESTIVDFT-ENIPVILR 197
Query: 218 KG 219
G
Sbjct: 198 PG 199
>gi|315123100|ref|YP_004065106.1| putative translation factor [Pseudoalteromonas sp. SM9913]
gi|315016860|gb|ADT70197.1| putative translation factor [Pseudoalteromonas sp. SM9913]
Length = 335
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G VALPT+T+YGLA DA+NS A+ ++ K R N PL + + E++ + WA
Sbjct: 19 AVALLKAGECVALPTETVYGLAADASNSDAVAKIFAAKGRPTNHPLIVHIPELSHVHHWA 78
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + L PGP+T++ N ++LN + + + +R+P H +LK +++
Sbjct: 79 KNVNKAAITLAEAFWPGPLTLILNAKDNLNSPVTGGLNSIGLRVPAHPQFLAVLKQLNTG 138
Query: 159 LALTSANESNEPSTL-CINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN + S + + + L ++S V++GG STIVD + E + I+R
Sbjct: 139 LAAPSANRYKQLSPINTAHVMRDLNGRISAVLEGGQCD--VGIESTIVDATTEQL-RILR 195
Query: 218 KG 219
G
Sbjct: 196 PG 197
>gi|197117703|ref|YP_002138130.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
bemidjiensis Bem]
gi|197087063|gb|ACH38334.1| tRNA (N6-threonylcarbamyl-A37) modification ATPase [Geobacter
bemidjiensis Bem]
Length = 202
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Query: 33 DPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+ L+A + LK G VVA PTDT YG+ C + K I +Y++K+RD KP + S
Sbjct: 9 NPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICS 68
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+I++I ++A +F+ L LLPGP T V + + + V +R+PD+
Sbjct: 69 DISEISRYARVSNYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRMPDNNICLA 128
Query: 151 LLKLMDSPLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGIISNPERFGSTIVDL 207
++K + P+ TSAN S E N +Q +L L +V+DGG +S +++
Sbjct: 129 IVKELGHPIVTTSANLSGEDPIG--NPWQVEHELGKLLDLVVDGGDLSADVSSVVSLIGD 186
Query: 208 SEENVYSIVRKGV 220
S E ++RKGV
Sbjct: 187 SPE----LLRKGV 195
>gi|117925136|ref|YP_865753.1| translation factor SUA5 [Magnetococcus marinus MC-1]
gi|117608892|gb|ABK44347.1| translation factor SUA5 [Magnetococcus marinus MC-1]
Length = 206
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 15/184 (8%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+A LL AAQ L++G V+ PTDT YGL C +N K + + IK+ L + +
Sbjct: 11 NPQARLLRQAAQILQEGGVIVYPTDTTYGLGCVMSNRKGVERVVRIKQLSDTHQLTLLCA 70
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+++DI +A + LL LPGP T V S + ++ P + +R+P+H+
Sbjct: 71 DLSDIANYARVDNSCYRLLKRFLPGPYTFVLEASREVPKKILPRRKTIGLRVPNHQICHA 130
Query: 151 LLKLMDSPLALTS----ANES--NEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTI 204
LL+L+ PL TS +E +PS + +L Q+ ++IDGGI+ PE STI
Sbjct: 131 LLELVGEPLLSTSVRLPGHEEIFTDPSLI----RDQLEHQVDLIIDGGIL--PE-HPSTI 183
Query: 205 VDLS 208
+D++
Sbjct: 184 IDMT 187
>gi|365925057|ref|ZP_09447820.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266228|ref|ZP_14768714.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394425916|gb|EJE98815.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 337
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 9/209 (4%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
I K+ P AA L KG ++A PT+T+YGL DATN A+ +Y K R + PL +
Sbjct: 3 ITKIYKPAEIKQAAGELNKGELIAFPTETVYGLGADATNELAVKRVYLAKGRPSDNPLIV 62
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDH 145
VS + ++A D + +L+ PGP+T+VFN + L+ + + A R+P +
Sbjct: 63 TVSSTEMMEQFATDISEDAKKLIKNFWPGPLTLVFNIKPGTLSKTVTGGLKTAAFRMPQN 122
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--S 202
+ R+L++L P+ SAN S +PS T + + L +++ ++D G P + G S
Sbjct: 123 EVTRRLIELAQVPIVGPSANSSGKPSPTTAEHVYHDLEGKIAGIVDDG----PTQVGVES 178
Query: 203 TIVDLSEENVYSIVRKGVCYDKILKILHK 231
TI+D+S + + V ++I +L K
Sbjct: 179 TIIDMSTDKPLILRPGAVTVEEIEAVLQK 207
>gi|160881865|ref|YP_001560833.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans
ISDg]
gi|160430531|gb|ABX44094.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans
ISDg]
Length = 352
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 4/174 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK+G +VA PT+T+YGL DA + A +YE K R + PL + ++ I + + A
Sbjct: 21 AVELLKEGQLVAFPTETVYGLGGDALDKTAARRIYEAKGRPSDNPLIVHIANIEALKELA 80
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ ++ L + PGP+T++ +S+ + LE + VA+R+P + R+L+K
Sbjct: 81 VEVPEEAYRLADDFWPGPLTMILKKSDLVPLETTGGLDTVAIRMPSDEIARRLIKESGLY 140
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
LA SAN+S PST + L +S++IDGG S+ STIVDL+ +N
Sbjct: 141 LAAPSANKSGRPSTTKAEHVIEDLDGCVSMIIDGG--SSTIGLESTIVDLTGDN 192
>gi|381210936|ref|ZP_09918007.1| hypothetical protein LGrbi_13504 [Lentibacillus sp. Grbi]
Length = 340
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 5/197 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D +A AA+ L+ G VA PT+T+YGL DATN A++ ++ K R + PL V+
Sbjct: 14 DYQAIREAAELLRDGRTVAFPTETVYGLGADATNEAAVSGIFRAKGRPEDNPLIAHVATK 73
Query: 93 TDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ T +V+ +LL + PGP+T+V + + ++ + VRIP+H R+L
Sbjct: 74 EQLRSLVSTLPSVAEKLLDQFTPGPLTVVLPSNGVCAGNVTSGLSTIGVRIPEHPVAREL 133
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
LK D P+A SAN S +PS T + ++ L ++S ++DGG S ST+VD + +
Sbjct: 134 LKACDIPVAAPSANISGKPSPTTADHVWEDLNGKISGLVDGG--STGVGVESTVVDCT-Q 190
Query: 211 NVYSIVRKGVCYDKILK 227
+V ++R G + LK
Sbjct: 191 DVPIVLRPGGITKEQLK 207
>gi|303234993|ref|ZP_07321617.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4]
gi|302493848|gb|EFL53630.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4]
Length = 342
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 32/237 (13%)
Query: 25 MCSIVKVTDPKAALLA----AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +I++ D K + A A+ +K G VVA PT+T+YGL + + +A ++++K+R
Sbjct: 1 MNTIIENLDEKNKIQALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRK 60
Query: 81 VNKPLAICV----------SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE 130
+ PL + V SEIT+ K +L+ L PGP+TI+F +S+ +N
Sbjct: 61 RDNPLILHVTNEDMVKNLSSEITEDQK---------KLMDNLWPGPLTIIFKKSDKVNDV 111
Query: 131 LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVI 189
++ VA+R P + R L+ P+A SAN+S PS T + + + ++ +++
Sbjct: 112 VSCGGDTVAIRNPSDEIARFLIDKSGCPIAAPSANKSGRPSPTNAQDVYSDMQDEIEMIL 171
Query: 190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
DGG S ST+VDL+E+ Y+I+R G + L ++++ L++ NT P
Sbjct: 172 DGG--SCNIGIESTVVDLTEK-PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIP 225
>gi|284032940|ref|YP_003382871.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
gi|283812233|gb|ADB34072.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
Length = 295
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 6/183 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A ++ G +V LPTDT+YGLA DA + A+ L + K R + P + +S + + A
Sbjct: 30 AVDAIEAGDLVVLPTDTVYGLAADAFKADAVQRLLDAKGRGRDMPPPVLISVVESLDALA 89
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +L E PG +T++ + L +L VA+R+PDH+ R+LL P
Sbjct: 90 TDVPEAGRKLCEEFWPGALTVICHAQGSLMWDLGDTHGTVALRVPDHENTRELLSRT-GP 148
Query: 159 LALTSANESNEPSTLCI-NEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA++SAN S +P+ L + + ++L ++V +DGG +S E STIVDL+ +V +VR
Sbjct: 149 LAVSSANRSGQPAALDVYDAEEQLADSVAVYLDGGAVSGGEP--STIVDLT-GDVPHVVR 205
Query: 218 KGV 220
G
Sbjct: 206 IGA 208
>gi|18976678|ref|NP_578035.1| sua5 superfamily-like protein [Pyrococcus furiosus DSM 3638]
gi|397650806|ref|YP_006491387.1| sua5 superfamily-like protein [Pyrococcus furiosus COM1]
gi|18892255|gb|AAL80430.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638]
gi|393188397|gb|AFN03095.1| sua5 superfamily-like protein [Pyrococcus furiosus COM1]
Length = 341
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +AA+ +++G +VA PT+T+YGL DA N KA ++E K R + PL + ++E
Sbjct: 12 DERKLRVAARLIREGKLVAFPTETVYGLGADALNEKAARRIFEAKGRPADNPLIVHIAEF 71
Query: 93 TDIPKWADTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + + A ++LA + PGP+TIV R E + + VA+R+P ++ +L
Sbjct: 72 SQVYELAREVPEEAKMLAKKFWPGPLTIVLPRREIVPDVTTGGLDTVAIRMPANEIALKL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+KL P+A SAN S +PS T + + ++ +IDGG + G ST++DL+
Sbjct: 132 IKLSGRPIAAPSANISGKPSPTTAEHVADDFYGKIECIIDGG----ETKIGVESTVIDLT 187
Query: 209 E 209
E
Sbjct: 188 E 188
>gi|84494536|ref|ZP_00993655.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649]
gi|84384029|gb|EAP99909.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649]
Length = 260
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 17/201 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI------- 92
A +++G +V LPTDTLYG+ DA + A+ L + K R P + V E+
Sbjct: 20 ATAGVRQGDLVVLPTDTLYGIGADAFSPDAVQRLLDAKGRGREMPPPVLVPEVRTVDGLA 79
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
TD+P +A L+ PGP+T+VF L +L VAVR+PD++ +LL
Sbjct: 80 TDVPAYARA------LIERYWPGPLTLVFKAQPSLMWDLGDTGGTVAVRMPDNEVALELL 133
Query: 153 KLMDSPLALTSANESNEP-STLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
K + P+A++SAN + +P S I+ +L + + +DGG ++ STIVD +
Sbjct: 134 KEV-GPMAVSSANRTGQPASRTIIDAATQLGASVEFYLDGGPVTG--GLASTIVDCTHPE 190
Query: 212 VYSIVRKGVCYDKILKILHKY 232
+ R + D+I+ + +++
Sbjct: 191 PTILRRGAIDADEIMALANQH 211
>gi|392940168|ref|ZP_10305812.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter siderophilus
SR4]
gi|392291918|gb|EIW00362.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter siderophilus
SR4]
Length = 354
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 119/215 (55%), Gaps = 21/215 (9%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M IV++ DP+ L+ AA +++G +VA PT+T+YG+ ++ N +A+ ++ K R
Sbjct: 1 MTKIVRINKNDPEIELIDFAANVIREGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRP 60
Query: 81 VNKPLAICVSE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNP 133
+ PL + ++E + D+P+ A T L+ + PGP+T++F +SE +
Sbjct: 61 QDNPLIVHIAELEQIYDLVEDVPQKAKT------LMKKFWPGPLTLIFKKSEKVPYVNTA 114
Query: 134 NVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ VA+R+P + L+K + P++ SAN S +PS T + + L+ ++ V+IDGG
Sbjct: 115 GMDTVAIRMPSNPIAHLLIKRAEVPISAPSANVSGKPSPTDASHVIEDLYGKVDVIIDGG 174
Query: 193 IISNPERFGSTIVDLSEENVYSIVRKGVCYDKILK 227
ST++DL+E+ V I+R G ++LK
Sbjct: 175 KCDV--GVESTVLDLTEK-VPVILRPGAVTLEMLK 206
>gi|358068017|ref|ZP_09154489.1| hypothetical protein HMPREF9333_01370 [Johnsonella ignava ATCC
51276]
gi|356693986|gb|EHI55655.1| hypothetical protein HMPREF9333_01370 [Johnsonella ignava ATCC
51276]
Length = 369
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 9/183 (4%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A + KG + A PT+T+YGL DA N ++ +Y K R + PL + +++I+ + A+
Sbjct: 36 AAIISKGGLAAFPTETVYGLGGDALNPESAKKIYTAKSRPCDNPLIVHIADISQLKLLAE 95
Query: 101 THTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
LLAE PGP+T++ +S + E + + VAVR+P RQL++L + +
Sbjct: 96 DIPERAYLLAEKFWPGPMTLILKKSSIVPYETSGGLDTVAVRLPADDIARQLIRLSKTAI 155
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
A SAN S +PS TL + + L ++ V+ID G P G STI+D+S I+
Sbjct: 156 AAPSANTSGKPSPTLASHVVEDLGGRIDVIIDAG----PAEIGLESTIIDVSTSETV-IL 210
Query: 217 RKG 219
R G
Sbjct: 211 RPG 213
>gi|417926427|ref|ZP_12569826.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
SY403409CC001050417]
gi|341589277|gb|EGS32559.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
SY403409CC001050417]
Length = 342
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 32/237 (13%)
Query: 25 MCSIVKVTDPKAALLA----AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +I++ D K + A A+ +K G VVA PT+T+YGL + + +A ++++K+R
Sbjct: 1 MNTIIENLDEKNKIQALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRK 60
Query: 81 VNKPLAICV----------SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE 130
+ PL + V SEIT+ K +L+ L PGP+TI+F +S+ +N
Sbjct: 61 RDNPLILHVTNEDMVKNLSSEITEDQK---------KLMDNLWPGPLTIIFKKSDKVNDV 111
Query: 131 LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVI 189
++ VA+R P + R L+ P+A SAN+S PS T + + + ++ +++
Sbjct: 112 VSCGGDTVAIRNPSDEIARFLIDESGCPIAAPSANKSGRPSPTNAQDVYSDMQGEIEMIL 171
Query: 190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
DGG S ST+VDL+E+ Y+I+R G + L ++++ L++ NT P
Sbjct: 172 DGG--SCNIGIESTVVDLTEK-PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIP 225
>gi|326389253|ref|ZP_08210821.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
JW 200]
gi|345016596|ref|YP_004818949.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|325994616|gb|EGD53040.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
JW 200]
gi|344031939|gb|AEM77665.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 354
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 119/215 (55%), Gaps = 21/215 (9%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M IV++ DP+ L+ AA +++G +VA PT+T+YG+ ++ N +A+ ++ K R
Sbjct: 1 MTKIVRINKNDPEIELIDFAANVIREGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRP 60
Query: 81 VNKPLAICVSE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNP 133
+ PL + ++E + D+P+ A T L+ + PGP+T++F +SE +
Sbjct: 61 QDNPLIVHIAELKQIYDLVEDVPQKAKT------LMKKFWPGPLTLIFKKSEKVPYVNTA 114
Query: 134 NVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ VA+R+P + L+K + P++ SAN S +PS T + + L+ ++ V+IDGG
Sbjct: 115 GMDTVAIRMPSNPIAHLLIKRAEVPISAPSANVSGKPSPTDASHVIEDLYGKVDVIIDGG 174
Query: 193 IISNPERFGSTIVDLSEENVYSIVRKGVCYDKILK 227
ST++DL+E+ V I+R G ++LK
Sbjct: 175 KCDV--GVESTVLDLTEK-VPVILRPGAVTLEMLK 206
>gi|418070394|ref|ZP_12707669.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus R0011]
gi|423080182|ref|ZP_17068813.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus ATCC
21052]
gi|357539814|gb|EHJ23831.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus R0011]
gi|357543843|gb|EHJ25856.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus ATCC
21052]
Length = 340
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A++ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ N L++++ + A R PD R+L+ P
Sbjct: 73 TITPDAAKLMDTFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDDALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + L +++ V+D G P R G STI+DL+ +I
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDG----PTRVGVESTIIDLTVTPP-AI 187
Query: 216 VRKGVCYDKILKIL-----HKYHLVEKNTFP 241
+R G L+ L H V KN P
Sbjct: 188 LRPGAIGPHELEPLLGPVDSAAHHVGKNEAP 218
>gi|229551969|ref|ZP_04440694.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1]
gi|385835029|ref|YP_005872803.1| SUA5 domain protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314704|gb|EEN80677.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1]
gi|355394520|gb|AER63950.1| SUA5 domain protein [Lactobacillus rhamnosus ATCC 8530]
Length = 340
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A++ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ N L++++ + A R PD R+L+ P
Sbjct: 73 TITPDAAKLMDTFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDDALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + L +++ V+D G P R G STI+DL+ +I
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDG----PTRVGVESTIIDLTVTPP-AI 187
Query: 216 VRKGVCYDKILKIL-----HKYHLVEKNTFP 241
+R G L+ L H V KN P
Sbjct: 188 LRPGAIGPHELEPLLGPVDSAAHHVGKNEAP 218
>gi|408418912|ref|YP_006760326.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacula toluolica Tol2]
gi|405106125|emb|CCK79622.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacula toluolica Tol2]
Length = 202
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
+KKG ++A PTDT YG+ CD N KAI +Y IK+R+ NKP + ++ DI K+A
Sbjct: 22 IKKGGIIAYPTDTFYGIGCDIMNKKAIEKIYTIKQRNKNKPFSFICPDLKDISKYAKVSN 81
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
++ + LLPGP T V + S+ + + +R+PD+K L + P+ TS
Sbjct: 82 FAYRNMKRLLPGPYTFVLSGSKLVPKIMLTKRRTAGIRVPDNKIALALANELGHPIISTS 141
Query: 164 ANES-----NEPSTLCINEFQKLWSQLSVVIDGGII-SNPERFGSTIVDLSEENVYSIVR 217
A ++PS L + + +VIDGG + +P S I D+ E I+R
Sbjct: 142 ATRPDGKVFDDPSLL----HDYFATTIDIVIDGGSVPGSPSSVISLIDDVPE-----IIR 192
Query: 218 KG 219
G
Sbjct: 193 YG 194
>gi|421769639|ref|ZP_16206345.1| Sua5 YciO YrdC YwlC family protein [Lactobacillus rhamnosus
LRHMDP2]
gi|421771456|ref|ZP_16208116.1| Sua5 YciO YrdC YwlC family protein [Lactobacillus rhamnosus
LRHMDP3]
gi|411184144|gb|EKS51278.1| Sua5 YciO YrdC YwlC family protein [Lactobacillus rhamnosus
LRHMDP2]
gi|411186042|gb|EKS53168.1| Sua5 YciO YrdC YwlC family protein [Lactobacillus rhamnosus
LRHMDP3]
Length = 340
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A++ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ N L++++ + A R PD R+L+ P
Sbjct: 73 TITPDAAKLMDTFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDDALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + L +++ V+D G P R G STI+DL+ +I
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDG----PTRVGVESTIIDLTVTPP-AI 187
Query: 216 VRKGVCYDKILKIL-----HKYHLVEKNTFP 241
+R G L+ L H V KN P
Sbjct: 188 LRPGAIGPHELEPLLGPVDSAAHHVGKNEAP 218
>gi|448424738|ref|ZP_21582594.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum terrestre JCM 10247]
gi|445681948|gb|ELZ34373.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum terrestre JCM 10247]
Length = 209
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G +V PT+T+YGL DA ++ A+ ++E+K RD + PL++ V+ + D ++A
Sbjct: 19 AAAAVDRGELVVYPTETVYGLGADALDADAVERVFELKGRDRSNPLSLGVASVDDALRYA 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ LPGPVT+V R + + L +V +R+PDH R LL PL
Sbjct: 79 RPTERAVAFARAFLPGPVTVVVERGDPVPDALTAGRDRVGIRVPDHDLARALLDET-GPL 137
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + ++ ++ VID G E ST+VD +I R+
Sbjct: 138 TATSANVSGTGSVTDPADLDDRIREGVAAVIDDGEAPGTE---STVVD---PEAGTIHRR 191
Query: 219 GVCYDKI 225
G I
Sbjct: 192 GAMAGAI 198
>gi|217967196|ref|YP_002352702.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724]
gi|217336295|gb|ACK42088.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724]
Length = 338
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 119/212 (56%), Gaps = 13/212 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ L+KG +VA PT+T+YGL DA N +A+ ++ K R + P+ + V + +
Sbjct: 20 AAQVLEKGGLVAFPTETVYGLGADALNPEAVKKIFIAKGRPPDNPIIVHVGKKEQVYSLT 79
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +++ +L+ E PGP+T++F +S ++ + KV +R P +K +LL++ P
Sbjct: 80 ENVPSIAEKLMEEFWPGPLTLIFYKSNLVDDVVTAGSPKVGIRQPMNKVALKLLEVFGKP 139
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + + L ++ ++IDGG ++ FG ST++D++ + I
Sbjct: 140 IAAPSANVSGRPSPTKAEHVIEDLEDKIDIIIDGGDVN----FGVESTVLDITTDTPI-I 194
Query: 216 VRKGVC-YDKILKILHKYHLV---EKNTFPIP 243
R G C ++I +++ K +V EK+ +P
Sbjct: 195 YRPGACPKEEIERVIGKKVMVWNKEKSKEDVP 226
>gi|258508168|ref|YP_003170919.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG]
gi|385827840|ref|YP_005865612.1| translational factor [Lactobacillus rhamnosus GG]
gi|257148095|emb|CAR87068.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG]
gi|259649485|dbj|BAI41647.1| translational factor [Lactobacillus rhamnosus GG]
Length = 340
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A++ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ N L++++ + A R PD R+L+ P
Sbjct: 73 TITPDAAKLMDTFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDDALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + L +++ V+D G P R G STI+DL+ +I
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDG----PTRVGVESTIIDLTVTPP-AI 187
Query: 216 VRKGVCYDKILKIL-----HKYHLVEKNTFP 241
+R G L+ L H V KN P
Sbjct: 188 LRPGAIGPHELEPLLGPVDSAAHHVGKNEAP 218
>gi|14602037|ref|NP_148583.1| translation factor [Aeropyrum pernix K1]
gi|5106101|dbj|BAA81412.1| putative translation factor [Aeropyrum pernix K1]
Length = 367
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D +A AA+ L++G +VA PT+T+YGL DA N +A ++E+K R + PL + VS +
Sbjct: 22 DRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHVSSL 81
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
A+ + L+ +L PGP+T+V R + + + VAVR+P HK +L+
Sbjct: 82 EMARTVAEIPGKALRLVEKLWPGPLTLVLPRKPVVPDIVTAGLETVAVRMPAHKVALELV 141
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
K P+A SAN S PS T + + L + V++D G FG STI+DL+
Sbjct: 142 KAAGRPVAAPSANPSGRPSPTSGEHVIRDLDCMVDVILDAGETY----FGVESTIIDLTR 197
>gi|420154940|ref|ZP_14661812.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Clostridium sp. MSTE9]
gi|394759921|gb|EJF42570.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Clostridium sp. MSTE9]
Length = 344
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 106/202 (52%), Gaps = 14/202 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +VA+PT+T+YGLA +A + +A+ ++ K R ++ PL + +S++ +WA
Sbjct: 21 AGNLLKNGGLVAIPTETVYGLAANALDGRAVAAIFAAKGRPMDNPLIVHISQLD---QWA 77
Query: 100 ----DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
+ + EL PGP+TI+ +S + E++ VAVR P H R ++
Sbjct: 78 ALVSEIPPRAMELANRFWPGPLTIILPKSPLIPDEVSAGQATVAVRFPSHPVARAVIDAA 137
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
PLA SAN S PS T + L ++ V+DGG P R G ST++ L++E
Sbjct: 138 GVPLAAPSANLSGSPSPTEAQHVLADLDGRIDAVLDGG----PCRVGVESTVITLAQEVP 193
Query: 213 YSIVRKGVCYDKILKILHKYHL 234
+ G+ +++ ++L + +
Sbjct: 194 RLLRPGGITPEQLSQVLGRVEV 215
>gi|339634495|ref|YP_004726136.1| translation factor SUA5 [Weissella koreensis KACC 15510]
gi|338854291|gb|AEJ23457.1| translation factor SUA5 [Weissella koreensis KACC 15510]
Length = 343
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 10/195 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L+KG +V+ PT+T+YGL DA N KA++ +Y K R + PL + VS + +A
Sbjct: 14 AVKALQKGQLVSFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPLIVHVSRPETVQTYA 73
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ ++ L+ + + VA R+PD+ R L+ + SP
Sbjct: 74 KVDARAQKLMDTFWPGPLTIILPIQAGKLSALVTGGLQTVASRMPDNDLTRSLIDQVGSP 133
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS N + L +++ V+D G + G ST++DLS +I
Sbjct: 134 LVGPSANTSGKPSPTIANHVYHDLHGKIAGVLDDGAT----KIGVESTVIDLSTPQA-AI 188
Query: 216 VRKG-VCYDKILKIL 229
+R G + ++I IL
Sbjct: 189 LRPGKITAEQIEAIL 203
>gi|448337498|ref|ZP_21526575.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema pallidum DSM 3751]
gi|445625404|gb|ELY78764.1| Sua5/YciO/YrdC/YwlC family protein [Natrinema pallidum DSM 3751]
Length = 195
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL A S+ + ++E+K RD KPL+ V + ++
Sbjct: 7 AADAIESGDLVVYPTETVYGLGGAALESETVERVFEVKGRDRTKPLSFAVPSVPSALQYV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R + EL +V VRIPD+ L + +P+
Sbjct: 67 RATDRERRFMATFLPGPVTVLCRRRAAVPDELTAGRERVGVRIPDNDLALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S +++ ++ +VV+DGG ST+VD+S ++ R
Sbjct: 127 TATSANVSGRESARRLDDLDPEIREAAAVVLDGGRTDGGTE--STVVDVSSGTIH---RH 181
Query: 219 GVCYDKILKILHKY 232
G D+I L ++
Sbjct: 182 GAQADEIEAWLEQH 195
>gi|223477815|ref|YP_002582323.1| sua5 superfamily-like protein [Thermococcus sp. AM4]
gi|214033041|gb|EEB73869.1| sua5 superfamily-related protein [Thermococcus sp. AM4]
Length = 343
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 20/180 (11%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE------- 91
+AA+ +++G +VA PT+T+YGL DA N KA+ ++E K R + PL I ++E
Sbjct: 17 VAARLIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIIHIAEREWLFEL 76
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
DIP+ A EL PGP+T+V + E + + VAVR+P H +L
Sbjct: 77 ARDIPEKA------LELAERFWPGPLTLVLPKGERVPSVTTGGLDTVAVRMPAHPIALEL 130
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++L P+A SAN S +PS T + + ++ ++DGG P G ST++DL+
Sbjct: 131 IRLSGRPVAAPSANISGKPSPTDADHVVDDFYGRIECIVDGG----PTWIGVESTVLDLT 186
>gi|169824779|ref|YP_001692390.1| translation factor [Finegoldia magna ATCC 29328]
gi|167831584|dbj|BAG08500.1| translation factor [Finegoldia magna ATCC 29328]
Length = 342
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 32/237 (13%)
Query: 25 MCSIVKVTDPKAALL----AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +I++ D K + AA+ +K G VVA PT+T+YGL + + +A ++++K+R
Sbjct: 1 MNTIIENLDEKNKIKSLEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRK 60
Query: 81 VNKPLAICV----------SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE 130
+ PL + V SEIT+ K +L+ L PGP+TI+F +S+ +N
Sbjct: 61 RDNPLILHVTNEDMVKNLSSEITEDQK---------KLMDNLWPGPLTIIFKKSDKVNDV 111
Query: 131 LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVI 189
++ VA+R P + R L+ P+A SAN+S PS T + + + ++ +++
Sbjct: 112 VSCGGDTVAIRNPSDEIARFLIDKSGCPIAAPSANKSGRPSPTNAQDVYSDMQGEIEMIL 171
Query: 190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
DGG S ST+VDL+E+ Y+I+R G + L ++++ L++ NT P
Sbjct: 172 DGG--SCNIGIESTVVDLTEK-PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIP 225
>gi|199597585|ref|ZP_03211014.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001]
gi|199591608|gb|EDY99685.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001]
Length = 340
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A++ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ N L++++ + A R PD R+L+ P
Sbjct: 73 TITPDAAKLMDTFWPGPLTIILNVLPGRLSMKVTGGLQTAAFRNPDDALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + L +++ V+D G P R G STI+DL+ +I
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDG----PTRVGVESTIIDLTVTPP-AI 187
Query: 216 VRKGVCYDKILKIL-----HKYHLVEKNTFP 241
+R G L+ L H V KN P
Sbjct: 188 LRPGAIGPHELEPLLGPVDSAAHHVGKNEAP 218
>gi|310644396|ref|YP_003949155.1| translation factor (sua5) [Paenibacillus polymyxa SC2]
gi|309249347|gb|ADO58914.1| Putative translation factor (SUA5) [Paenibacillus polymyxa SC2]
gi|392305078|emb|CCI71441.1| putative protein YwlC [Paenibacillus polymyxa M1]
Length = 427
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+T K AA L+ G VA PT+T+YGL DA ++KA+ ++ K R + PL + +S
Sbjct: 83 ITAEKGIREAAVLLQAGETVAFPTETVYGLGADARSTKAVEAVFAAKGRPSDNPLIVHIS 142
Query: 91 EITDIPKW-ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFL 148
+ + A+ + + L+ PGP+T+V S+ L+ + + V VR+PDH
Sbjct: 143 DAAQLKGMVAEINDTARALMNTFWPGPLTLVLPVVSQALSSRVTAGLDTVGVRMPDHPIA 202
Query: 149 RQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIV 205
+L+ PLA SAN S PS TL + + L ++ ++DGG P G ST+V
Sbjct: 203 LRLIAEAGCPLAAPSANRSGRPSPTLAQHVLEDLKGRIGGILDGG----PTGVGLESTVV 258
Query: 206 DLSEENVYSIVRKG 219
+ +E +I+R G
Sbjct: 259 QVGDEGTVTILRPG 272
>gi|23100449|ref|NP_693916.1| hypothetical protein OB2994 [Oceanobacillus iheyensis HTE831]
gi|22778682|dbj|BAC14950.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 339
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 21/207 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA L+ G VA PT+T+YGL DATN +A++ +++ K R + PL V+ +
Sbjct: 21 AAGILQAGQTVAFPTETVYGLGADATNPQAVSKIFQAKGRPEDNPLIAHVATKEQLQRLV 80
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
T IP + D +L+A PGP+T + + + + + VRIP+H QLL
Sbjct: 81 TSIPGYVD------KLIAAFSPGPLTFILPSNGICASNVTAGLDTIGVRIPNHPVALQLL 134
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
K +D P+A SAN S +PS T + F L +++ ++DGG P G ST++D ++
Sbjct: 135 KEVDIPIAAPSANISGKPSPTTADHVFNDLEGRIAGLVDGG----PTGVGLESTVIDCTQ 190
Query: 210 ENVYSIVRKGVCYDKILKILHKYHLVE 236
E + I+R G + L+ + + LV+
Sbjct: 191 E-IPVILRPGGVTKENLESVIGHVLVD 216
>gi|389581383|ref|ZP_10171410.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacter postgatei 2ac9]
gi|389403018|gb|EIM65240.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacter postgatei 2ac9]
Length = 202
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 104/192 (54%), Gaps = 13/192 (6%)
Query: 34 PKAAL--LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
P+A + +A + LKKG ++A PTDT YG+ CD N KAI +Y+IK+RD KP + +
Sbjct: 10 PQARIISMAVESLKKGGIIAYPTDTFYGIGCDIMNKKAIEKIYQIKQRDKTKPFSFICPD 69
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ +I ++A +++ + LLPGP T + S+ + + +R+P ++ L
Sbjct: 70 LKNIAEYAKVSNIAYRHMKRLLPGPYTFILTGSKMVPKIMLTKRKTAGIRVPANQIAINL 129
Query: 152 LKLMDSPLALTSANESN----EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
+ +P+ TSA + + E ++L + F +++ +V+DGG + N S+++ L
Sbjct: 130 ALELGNPIISTSATDPDGQVFENASLLHDYFD---ARIDMVLDGGPVPN---IPSSVISL 183
Query: 208 SEENVYSIVRKG 219
E+ ++R G
Sbjct: 184 VEDEP-EVIRHG 194
>gi|345023578|ref|ZP_08787191.1| hypothetical protein OTW25_20089 [Ornithinibacillus scapharcae
TW25]
Length = 344
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 8/196 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK G VA PT+T+YGL DATN++A+ +++ K R + PL V+ + K
Sbjct: 23 AAQLLKAGHTVAFPTETVYGLGADATNAEAVAKIFQAKGRPQDNPLIAHVASKDQLLKLV 82
Query: 100 DTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D+ E L+ PGP+T V + + + V VRIP H LLK+ D P
Sbjct: 83 DSLPDYVENLIDAFSPGPITYVLPSNGICAENVTAGLPTVGVRIPSHPVALALLKVCDVP 142
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T + ++ L +++ ++DGG P G STI+D ++E +
Sbjct: 143 IAAPSANLSGKPSPTTADHVWEDLNGRIAGIVDGG----PTGVGVESTIIDCTQETPSIL 198
Query: 216 VRKGVCYDKILKILHK 231
G+ ++I +I+ K
Sbjct: 199 RPGGISKEEIEEIVGK 214
>gi|84488926|ref|YP_447158.1| hypothetical protein Msp_0096 [Methanosphaera stadtmanae DSM 3091]
gi|84372245|gb|ABC56515.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
Length = 208
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 13/191 (6%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L +G +V PTDT+YG+ D N A+ +Y KKR +KP++IC+ +IT + + A
Sbjct: 22 LGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYDKPISICLHDITQVKEVAIVTD 81
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
++ ELLPGP T++ + ++ L N + +RIPD+K L K D P+ TS
Sbjct: 82 EIEHIINELLPGPYTLLLRKKSNIPDILTANTNIIGIRIPDNKITHSLTK--DFPITSTS 139
Query: 164 ANESNEPSTLCINEFQK-LWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSIVRK-- 218
AN SN + I + +K L + + ID G I + P STI+DL+++N I+R+
Sbjct: 140 ANLSNIQTPDNITDIKKQLGDNIDIYIDCGKKIKNQP----STIIDLTQQNP-KIIRQHK 194
Query: 219 -GVCYDKILKI 228
+KILKI
Sbjct: 195 NNELINKILKI 205
>gi|332158705|ref|YP_004423984.1| sua5 superfamily-like protein [Pyrococcus sp. NA2]
gi|331034168|gb|AEC51980.1| sua5 superfamily-related protein [Pyrococcus sp. NA2]
Length = 340
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + +AA+ +++G +VA PT+T+YGL DA N A+ ++E K R + PL + +S
Sbjct: 12 DERKLRIAARLIREGKLVAFPTETVYGLGADALNESAVRRIFEAKGRPADNPLIVHISSF 71
Query: 93 TDIPKWADTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + + A ++LA E PGP+ IV +SE + + VA+R+P +K +L
Sbjct: 72 SQVHELAREVPEEAKMLAREFWPGPLAIVLPKSEIVPKVTTGGLDTVAIRMPANKIALKL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++L P+A SAN S +PS T + + + ++ ++DGG + G ST++DL+
Sbjct: 132 IELSGRPIAAPSANISGKPSPTSAEHVAEDFYGKIECIVDGG----ETKIGVESTVIDLT 187
Query: 209 E 209
E
Sbjct: 188 E 188
>gi|392395596|ref|YP_006432198.1| translation factor SUA5 [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526674|gb|AFM02405.1| translation factor SUA5 [Desulfitobacterium dehalogenans ATCC
51507]
Length = 348
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +++G +VALPT+T+YGL +A ++ A ++++K R + PL + VS++ + +
Sbjct: 21 AAQLIREGQLVALPTETVYGLGANAMDANACKEIFKVKGRPQDNPLIVHVSDLEMVKRLV 80
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T L AE PGP+T+V ++ + ++ + VA+R+P H +L+K P
Sbjct: 81 EEWTPQAALCAEKFWPGPLTLVLEKTAFVPDVVSGGLGTVAIRMPKHPVALELIKEAGVP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S +PS T I+ ++ L ++ +++DGG S ST++DL+ E V +I+R
Sbjct: 141 IAAPSANLSGKPSPTQGIHVWKDLKGKIPMILDGGTCSV--GVESTVLDLTGE-VPTILR 197
Query: 218 KG 219
G
Sbjct: 198 PG 199
>gi|149278400|ref|ZP_01884537.1| translation factor [Pedobacter sp. BAL39]
gi|149230770|gb|EDM36152.1| translation factor [Pedobacter sp. BAL39]
Length = 250
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP--LAIC-- 88
+PKA A + LKKG ++ PTDT+YGL CD TN KAI + I+ K +C
Sbjct: 55 NPKAIEQAVEVLKKGGIIIYPTDTVYGLGCDITNQKAIERICRIRGIKPEKANFSFVCSD 114
Query: 89 VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFL 148
+ I+D K DT T F +L + LPGP T + N + ++ L+ N V +R+PD+
Sbjct: 115 LRHISDYIKPIDTTT--FRVLKKALPGPFTFILNANNNVPKLLSSNKKTVGIRVPDNDIA 172
Query: 149 RQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIV 205
R++++L+ +P+ TS + +E + +K ++ +VIDGG N ST+V
Sbjct: 173 REIVRLLGNPILSTSIKDDDEVIEYSTDPELIHEKYEDRVDLVIDGGYGDNEP---STVV 229
Query: 206 DLSEENVYSIVRKG 219
D + + ++R+G
Sbjct: 230 DCTSGE-FEVIREG 242
>gi|448307218|ref|ZP_21497118.1| Sua5/YciO/YrdC/YwlC family protein [Natronorubrum bangense JCM
10635]
gi|445596196|gb|ELY50289.1| Sua5/YciO/YrdC/YwlC family protein [Natronorubrum bangense JCM
10635]
Length = 196
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKK-RDVNKPLAICVSEITDIPKW 98
AA + G +V PT+T+YGL DA + A++ ++++K R +KP++ V + ++
Sbjct: 7 AAAAINDGKLVVYPTETVYGLGADALDPDAVDAVFDVKDXRARSKPISFAVPSVPSALRY 66
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +A LPGPVT++ R E + EL +V VR+PDH L + +P
Sbjct: 67 VRATDRERQFMARFLPGPVTVLCRRRESIPDELTAGRDRVGVRVPDHDLALALCERAGTP 126
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S + S + SVV++ G E ST+VDLS ++ R
Sbjct: 127 ITATSANVSGQGSVRTPEALDPAIREAASVVLEAGETRGTE---STVVDLSTATIH---R 180
Query: 218 KGVCYDKILKILHK 231
+G D+I L +
Sbjct: 181 RGAMADEIEAWLER 194
>gi|422810572|ref|ZP_16858983.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
J1-208]
gi|378751462|gb|EHY62052.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
J1-208]
Length = 345
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN AI +YE K R + PL + ++ + +A
Sbjct: 21 AAELLQNGECVAFPTETVYGLGADATNQAAIQKIYEAKGRPSDNPLIVHIARRNQMDSFA 80
Query: 100 DTH-TVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+TI+ + + L ++ ++ V VR+P+H L+ +
Sbjct: 81 ASYPPKAIQLMDKFWPGPLTIILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALISAANV 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG ST++D S E +
Sbjct: 141 PVAAPSANRSGKPSPTTADHVIEDLDGKIAGIIDGGATG--VGLESTVIDCSLEIPIILR 198
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
GV ++I +++ + NT
Sbjct: 199 PGGVTKEQIEQVIGPVDISTNNT 221
>gi|218233574|ref|YP_002370102.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264]
gi|218161531|gb|ACK61523.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264]
Length = 346
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 104/188 (55%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + +
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
T+IP A+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 TEIPPVAE------KLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG + ST++D +
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-ST 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|383453567|ref|YP_005367556.1| Sua5/YciO/YrdC/YwlC family protein [Corallococcus coralloides DSM
2259]
gi|380735126|gb|AFE11128.1| Sua5/YciO/YrdC/YwlC family protein [Corallococcus coralloides DSM
2259]
Length = 321
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L+ G V+ALPT+T+YGLA +A + A+ ++ IK R N PL + + + +P+WA
Sbjct: 10 AVELLRHGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPANHPLIVHIPDEEYLPEWA 69
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
LA PGP+T+V R+ + VA+R+P H ++L+ +
Sbjct: 70 REVPHEARALARAFWPGPLTLVLRRTSKATDAVTGGQDTVALRVPGHSVAMEVLERLGGG 129
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S Q+ L S + +V+DGG P G STIVDLS +I
Sbjct: 130 VAAPSANRFGRVSPTTAEHVQRDLGSDVDLVLDGG----PSTVGVESTIVDLS-SGAPAI 184
Query: 216 VR-KGVCYDKILKILHKYHLVEKNT 239
+R G+ + I ++L + V +T
Sbjct: 185 LRPGGLATEDIERVLGRAVPVRTST 209
>gi|422314964|ref|ZP_16396411.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
D10]
gi|404593080|gb|EKA94738.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
D10]
Length = 217
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 116/214 (54%), Gaps = 10/214 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ +I ++D K LA++ LKKG ++ PTDT+YGLA TN ++IN +Y K R
Sbjct: 6 KINNISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELL----PGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + E+L +L PG +T++ R +H+ + +
Sbjct: 65 PLIALLSSVDKVEEVATISDENREVLEKLAHAFWPGALTVILKRKKHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E + NE + + S++ +++DGG E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGESTPKSYNELSEAIKSRVDILVDGGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG-VCYDKILKILHK 231
STI+DL+ + V I+R G + D+I KI+ +
Sbjct: 185 --ASTIIDLTSD-VPKILRNGAISTDEITKIIGR 215
>gi|297588759|ref|ZP_06947402.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516]
gi|297574132|gb|EFH92853.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516]
Length = 342
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 28/218 (12%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---------- 89
AA +K G VVA PT+T+YGL + + +A ++++K+R + PL + V
Sbjct: 20 AADLIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEEMVRNLS 79
Query: 90 SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
SEIT+ K +L+ L PGP+TI+F +S+ +N ++ VA+R P + R
Sbjct: 80 SEITEDQK---------KLMDNLWPGPLTIIFKKSDKVNDVVSCGGNTVAIRNPSDEIAR 130
Query: 150 QLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
L+ D P+A SAN+S PS T + + + ++ +++DGG S ST+VDL+
Sbjct: 131 FLIDKSDCPIAAPSANKSGRPSPTNAQDVYSDMQGEIEMILDGG--SCNIGIESTVVDLT 188
Query: 209 EENVYSIVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
E+ Y+I+R G + L ++++ L++ T P
Sbjct: 189 EK-PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSKTIP 225
>gi|283781887|ref|YP_003372642.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068]
gi|283440340|gb|ADB18782.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068]
Length = 345
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 5/192 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AQ L G +VA+PT+T+YGLA DATN A+ ++ K R + PL + ++ +I +W
Sbjct: 25 GAQLLAAGELVAIPTETVYGLAADATNPMAVRKIFAAKGRPADHPLIVHIAYPDEIDRWG 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +++L A PGP+T++ R +++ + + +AVR P H ++LL+ +
Sbjct: 85 TEIPPAAWDLAAAFWPGPLTMIVRRRSNVDSVVAGGLDTIAVRCPSHPVAQRLLRELGRG 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN+ S T + + L +VIDGG STIVDLS ++ +I+R
Sbjct: 145 VAAPSANKFGHVSPTTAAHVLAEFGDTLPLVIDGGACEV--GLESTIVDLS-QSTPTILR 201
Query: 218 KGVCYDKILKIL 229
G L+++
Sbjct: 202 PGAISQTDLELV 213
>gi|270158487|ref|ZP_06187144.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968]
gi|289166681|ref|YP_003456819.1| translation initiation protein [Legionella longbeachae NSW150]
gi|269990512|gb|EEZ96766.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968]
gi|288859854|emb|CBJ13840.1| putative translation initiation protein [Legionella longbeachae
NSW150]
Length = 321
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 17/192 (8%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIP 96
L++G VA+PT+T+YGLA N +AI ++ IK R +N PL I V+E + DIP
Sbjct: 15 LQQGKPVAIPTETVYGLAAPINNEQAIKAVFAIKNRPLNHPLIIHVAENWALDLLVKDIP 74
Query: 97 KWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
+A +L+ + PGP+T+VF+ + + ++ + T VA+R P H ++LLK +
Sbjct: 75 AYAQ------QLIKKFWPGPLTLVFHCKQDQISPLITGGQTTVAIRCPAHPIAQELLKKL 128
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
PL SAN + S T + + ++Q ++DGG + STI+D ++ Y
Sbjct: 129 GVPLVAPSANPFGKVSPTTAEHVSESFYNQELTILDGGRCT--VGIESTIIDATDPQNYQ 186
Query: 215 IVRKGVCYDKIL 226
I+R G+ +K +
Sbjct: 187 ILRHGIIDEKAI 198
>gi|297569512|ref|YP_003690856.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925427|gb|ADH86237.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 205
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ + L++G V+ PTDT+YG+ CD N KA+ +Y++K+R + +P + +++
Sbjct: 12 PRLIKQVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKQRPLARPFSFICADLK 71
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ +A + +L + LPGP T V ++ + + V +R+PDH+ +L+
Sbjct: 72 DVSTYAHVSNTGYRVLRKSLPGPYTFVLPATKLVPKIMMTKQKTVGIRMPDHRICMELVT 131
Query: 154 LMDSPLALTSANESNEPSTLCINEF---QKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
+ +P+ TSA + + I+ + ++ Q+ ++ID G +++ ST+V L ++
Sbjct: 132 GLGNPILTTSAAPDDPDARQLIHAYEVEERYGKQVDLIIDSGPLAHSSP--STVVSLEDD 189
Query: 211 NVYSIVRKG 219
++ ++R G
Sbjct: 190 DL-QVLRPG 197
>gi|444918460|ref|ZP_21238531.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Cystobacter fuscus DSM 2262]
gi|444709826|gb|ELW50824.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Cystobacter fuscus DSM 2262]
Length = 204
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ A L G V+A PTDT YGL CD + K I LY++K RD KPL+I +++
Sbjct: 17 PRHVQRAVDILSGGGVIAYPTDTYYGLGCDLGSKKGIERLYKLKGRDRKKPLSILCPDLS 76
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ K+A ++ + L PG T + + + + +V +R+PD + R L
Sbjct: 77 DVAKYAHVSNFAYRTMKGLTPGAFTFILEATRLVPEVMMSKQKQVGIRVPDSELARALAA 136
Query: 154 LMDSPLALTSANES-NEPSTLCINEFQKLWSQLSVVIDGGI 193
+ PL TSA ++ EP T + L L +++D G+
Sbjct: 137 GLGRPLVTTSATDAEGEPLTDARSIKDALGHGLDLILDAGV 177
>gi|406994505|gb|EKE13491.1| hypothetical protein ACD_13C00015G0056 [uncultured bacterium]
Length = 351
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+A LK G ++ PT+TLYG+ DATN +A+ L K R + KP +I V +I ++
Sbjct: 13 IADGILKSGGLIIYPTETLYGVGVDATNEEAVKKLTVYKNRPLGKPYSIAVRDIKMAEEY 72
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + L E LPGP+T++ L + KV +R+PD++F+++L+ P
Sbjct: 73 GNINQTAKNLFLEFLPGPLTVIVRGKHKLARGVESENGKVGIRLPDYEFVQKLVGKFGKP 132
Query: 159 LALTSANESNEP-----STLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+ TSAN S + S + N QK + +V+D G + P R ST++D +
Sbjct: 133 ITATSANASYKKRPYQVSDILDNLSQKQKDLIDLVVDAGKL--PTRDPSTVIDTT 185
>gi|345327249|ref|XP_001511974.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 120
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
Query: 134 NVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGI 193
T V +RIP H F+RQL++ PLALTSAN S++ S+L + EF+ LW QLS+++DGG
Sbjct: 7 TATLVGIRIPRHAFMRQLVQKFSGPLALTSANVSSQASSLTVKEFRDLWPQLSLIVDGGP 66
Query: 194 ISN---PE-RFGSTIVDLSEENVYSIVRKGVCYDKILKILH-KYHL 234
I + PE R GST+VDLS +S++R G + IL KY L
Sbjct: 67 IGDVQSPECRLGSTVVDLSVPGKFSVIRPGCALTQTADILQRKYGL 112
>gi|281411518|ref|YP_003345597.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10]
gi|281372621|gb|ADA66183.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10]
Length = 335
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L+ G V+ PT+T+YG+ DA N +A ++E+K R + PL + + + + + A
Sbjct: 20 AVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSLEQLEEIA 79
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + L + PGP+T++ +SE + + + VAVR+P H +L++L +P
Sbjct: 80 EGYEPHLDFLKKFWPGPLTVILRKKSEKIPPVVTAGLPTVAVRMPAHPVALKLIELFGNP 139
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+A SAN S PS + + ++ ++ID G P STIVDL++E
Sbjct: 140 IAAPSANISGRPSATNVKHVVEDFMGKVKLIIDAG--DTPFGLESTIVDLTKEK 191
>gi|323491653|ref|ZP_08096832.1| putative translation factor [Vibrio brasiliensis LMG 20546]
gi|323314229|gb|EGA67314.1| putative translation factor [Vibrio brasiliensis LMG 20546]
Length = 320
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 5/193 (2%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
+ +D + LA Q L G +VA+PT+T+YGLA DA+N +A+ ++ K R N PL +
Sbjct: 6 LSASDKQDIELAKQILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLIVH 65
Query: 89 VSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
+ + + WA D ++ + PGPVT++ N++ + + + +R+P H
Sbjct: 66 IGNVEQLSDWARDIPQQAYTIADAFWPGPVTLLLNKAPQATPVVTGGLDTIGIRMPAHDV 125
Query: 148 LRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
LLK +A SAN + S T + L ++S V+DGG ++ STI+D
Sbjct: 126 FSTLLKSSGMAVAAPSANPYKKLSPTSAEHVLNSLGGKISAVLDGGDCAH--GLESTIID 183
Query: 207 LSEENVYSIVRKG 219
L+E+ + I+R G
Sbjct: 184 LTEKP-FRILRTG 195
>gi|295094170|emb|CBK83261.1| Sua5/YciO/YrdC/YwlC family protein [Coprococcus sp. ART55/1]
Length = 350
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
V D + AA+ LK+G +VA PT+T+YGL DA N A + +Y K R + PL + ++
Sbjct: 10 VDDDRMYEQAAEILKRGGLVAFPTETVYGLGGDALNPDASHRIYAAKGRPSDNPLIVHIA 69
Query: 91 EITDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
E + + + A+T + + L E PGP+TI+ N+ E + + VA+R+P H
Sbjct: 70 ETSSVYELAETVSDDTKKLMEAFWPGPLTIILNKKEVVPHTTTGGLDTVAIRMPSHPVAM 129
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLS 208
+L+K +A SAN S PS Q+ + ++ ++IDGG + STIVD++
Sbjct: 130 RLIKDSGVYIAAPSANLSGRPSPTTAQHVQQDMDGRIDMIIDGGAVGI--GIESTIVDMT 187
Query: 209 EENVYSIVRKG 219
+ +I+R G
Sbjct: 188 GDRP-TILRPG 197
>gi|260888151|ref|ZP_05899414.1| SUA5 protein [Selenomonas sputigena ATCC 35185]
gi|260862180|gb|EEX76680.1| SUA5 protein [Selenomonas sputigena ATCC 35185]
Length = 377
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 11/204 (5%)
Query: 30 KVTDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
KV P AA + A L+ G VVA PT+T+YGL + ++ A +YE K R + PL +
Sbjct: 7 KVLPPTAAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLIL 66
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
++ + + A D ++ LLA PGP+T+V R + + + V VR+P++
Sbjct: 67 HIAHRAMLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAAVPDRITGGLATVGVRMPEND 126
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
L++ PLA SAN S PS T + L ++ +++DGG P RFG ST
Sbjct: 127 AALALIRAAGFPLAAPSANTSGRPSPTTAETVLEDLAGRIPLILDGG----PCRFGVEST 182
Query: 204 IVDLSEENVYSIVRKGVCYDKILK 227
IVD++ E I+R G ++L+
Sbjct: 183 IVDVTGEAAV-ILRPGAITREMLE 205
>gi|448509956|ref|ZP_21615837.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum distributum JCM
9100]
gi|448522048|ref|ZP_21618313.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum distributum JCM
10118]
gi|445696297|gb|ELZ48388.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum distributum JCM
9100]
gi|445702322|gb|ELZ54276.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum distributum JCM
10118]
Length = 209
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G V PT+T+YGL DA ++ A+ ++E+K RD + PL++ V+ + D ++A
Sbjct: 19 AAAAVDRGEPVVYPTETVYGLGADALDADAVERVFELKGRDRSNPLSLGVASVDDALRYA 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ LPGPVT+V R + + L +V +R+PDH R LL PL
Sbjct: 79 RPTERAVAFARAFLPGPVTVVVERGDPVPDALTAGRDRVGIRVPDHDLARALLDET-GPL 137
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S T + ++ ++ VID G E ST+VD +I R+
Sbjct: 138 TATSANVSGTGSVTDPADLDDRIRGGVAAVIDDGEAPGTE---STVVD---PEAGTIHRR 191
Query: 219 GVCYDKI 225
G I
Sbjct: 192 GAMAGAI 198
>gi|424612899|ref|ZP_18051702.1| SUA5 domain protein, partial [Vibrio cholerae HC-41A1]
gi|408015089|gb|EKG52685.1| SUA5 domain protein, partial [Vibrio cholerae HC-41A1]
Length = 220
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|409200010|ref|ZP_11228213.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas flavipulchra
JG1]
Length = 336
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
TDP A AA+ + G +VA+PT+T+YGLA DA A+ ++ K R + PL + ++
Sbjct: 13 ATDPSAVAQAAELARDGHLVAVPTETVYGLAADARQPDAVKKIFAAKGRPADHPLIVHLA 72
Query: 91 EITDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
+ + + +W +T F+ LA+ PGP+TIV + H++ + V +R+P+H +
Sbjct: 73 DKSLVTEWVETLPDYFDALADAFWPGPLTIVAKKQAHVSDVVTGGHPTVGIRVPNHPAML 132
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVD 206
LL+ ++S LA SAN + S + L +++ V+DGG P G STIVD
Sbjct: 133 ALLQHINSGLAAPSANPYKKISPTTAEQVLFGLSGKIAAVLDGG----PCEVGLESTIVD 188
Query: 207 LSEENVYSIVRKG 219
+S I+R G
Sbjct: 189 ISSATP-RILRAG 200
>gi|239637409|ref|ZP_04678391.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603]
gi|239597009|gb|EEQ79524.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603]
Length = 347
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 6/184 (3%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VALPT+T+YGL DATN +A++ +YE K R + PL + + +++ + + DT
Sbjct: 31 GGLVALPTETVYGLGADATNQEAVSHIYEAKGRPSDNPLIVHIHDMSQMNDFVDTLEPKV 90
Query: 107 ELLAE-LLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+ L E PGP++ + +S +L ++ + +AVR+P H R +L+ +D P+A SA
Sbjct: 91 QSLMEAFWPGPISFILPLKSGYLCPKVTGGLNSIAVRMPSHPIGRSVLQHIDKPIAAPSA 150
Query: 165 NESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD 223
N S PS FQ L ++ +I+G + E ST++D ++ + I R G
Sbjct: 151 NISGRPSPTTFEHVFQDLNGRIDGIINGD--QSEEGLESTVLDCTQY-PFRIARPGSITK 207
Query: 224 KILK 227
K+++
Sbjct: 208 KMIE 211
>gi|218778786|ref|YP_002430104.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218760170|gb|ACL02636.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 202
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ LK+G ++A PTDT+YG+ CD N KAI +Y +K+ + +PL+ S++ +I +A
Sbjct: 20 EVLKRGGIIAYPTDTIYGIGCDIMNKKAIQKVYRLKQMESTQPLSFICSDLQNISDYAKV 79
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+++ + LLPGP T + S+ + + +R+P+H +++K + +P+
Sbjct: 80 SNYAYKTMKRLLPGPYTFILEASKLVPKIMITKRKTAGIRVPEHAICMEIIKELGNPIIS 139
Query: 162 TSA-----NESNEPSTLCINEFQKLWSQLSVVIDGGIISN 196
TSA NE +PS L +Q+ +VIDGG +S
Sbjct: 140 TSAADLDGNEFMDPSLL----HDYYNNQIDLVIDGGPVSG 175
>gi|376259651|ref|YP_005146371.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. BNL1100]
gi|373943645|gb|AEY64566.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. BNL1100]
Length = 354
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 20/179 (11%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI------CVSEIT 93
AA+ LK+G VA PT+T+YGL +A + A+N +++ K R + PL + VSE+T
Sbjct: 21 AAEALKQGMTVAFPTETVYGLGANALDGVAVNKIFKAKGRPSDNPLIVHIADREKVSELT 80
Query: 94 D-IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
IP A L+ +L PGP+T+V +S + E+ + VA+R+P H QL+
Sbjct: 81 SFIPNKA------VALMDKLWPGPLTLVMKKSSVIPREITAGLDTVAIRMPGHPVALQLI 134
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
KL P+A SAN S +PS T + L ++ ++ID G R G ST++D+S
Sbjct: 135 KLAGIPVAAPSANVSGKPSPTTAQHVLDDLEGKIEIIIDAG----SSRVGLESTVLDVS 189
>gi|330840018|ref|YP_004414598.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC
35185]
gi|329747782|gb|AEC01139.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC
35185]
Length = 375
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 11/204 (5%)
Query: 30 KVTDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
KV P AA + A L+ G VVA PT+T+YGL + ++ A +YE K R + PL +
Sbjct: 5 KVLPPTAAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLIL 64
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
++ + + A D ++ LLA PGP+T+V R + + + V VR+P++
Sbjct: 65 HIAHRAMLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAAVPDRITGGLATVGVRMPEND 124
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
L++ PLA SAN S PS T + L ++ +++DGG P RFG ST
Sbjct: 125 AALALIRAAGFPLAAPSANTSGRPSPTTAETVLEDLAGRIPLILDGG----PCRFGVEST 180
Query: 204 IVDLSEENVYSIVRKGVCYDKILK 227
IVD++ E I+R G ++L+
Sbjct: 181 IVDVTGEAAV-ILRPGAITREMLE 203
>gi|448450533|ref|ZP_21592352.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum litoreum JCM 13561]
gi|445811647|gb|EMA61650.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum litoreum JCM 13561]
Length = 209
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G +V PT+T+YGL DA ++ A+ ++++K RD + PL++ V+ + D ++A
Sbjct: 19 AAAAVDRGELVVYPTETVYGLGADALDADAVERVFDLKGRDRSNPLSLGVASVDDALRYA 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ LPGPVT+V R + + L +V +R+PDH R LL PL
Sbjct: 79 RPTERAVAFARAFLPGPVTVVVERGDPVPDALTAGRDRVGIRVPDHDLARALLDET-GPL 137
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + ++ ++ VID G E ST+VD +I R+
Sbjct: 138 TATSANVSGTGSVTDPADLDDRIRGGVAAVIDDGEAPGTE---STVVD---PEAGTIHRR 191
Query: 219 GVCYDKI 225
G I
Sbjct: 192 GAMAGAI 198
>gi|406967466|gb|EKD92538.1| hypothetical protein ACD_28C00409G0016 [uncultured bacterium]
Length = 206
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 6/192 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VA PTDT YGLA D N A+ LY K D++KP++I + + + K+A
Sbjct: 14 AVSILKQGGIVAHPTDTCYGLAVDIHNPAALLHLYHTKGMDLSKPVSILTASLKEAQKYA 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++ L+ + PG +T+V R L LN + + V +R D F LL+ P+
Sbjct: 74 QFSDLALRLVKQFWPGALTLVLPRKSVLPFFLNSDESFVGLRCIDEPFSVALLQAWGGPV 133
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN + S + + Q ++D G I P R STI+ + +ENV +++R G
Sbjct: 134 TTTSANFHGKSSPYAVRDIS---VQPDFILDAGDI--PVRMPSTIIRIDDENV-NLLRSG 187
Query: 220 VCYDKILKILHK 231
+ + + L +
Sbjct: 188 DLDEAVFEFLSR 199
>gi|390629609|ref|ZP_10257603.1| SUA5 family translation factor [Weissella confusa LBAE C39-2]
gi|390485245|emb|CCF29951.1| SUA5 family translation factor [Weissella confusa LBAE C39-2]
Length = 342
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +K+G +VA PT+T+YGL DA N A+ +Y K R + PL + VS+ + ++A
Sbjct: 15 AVRAIKRGSLVAFPTETVYGLGADAFNDTAVGKVYAAKGRPSDNPLIVHVSDPEQVDRFA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + +L+ PGP+T++ + ++ + + VA R+PD+ R L++ D+P
Sbjct: 75 EVNDWAKKLMDAFWPGPLTMILPVKPGTVSTTVTGGLDTVAARMPDNDLTRALIREADAP 134
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS T + + L +++ ++D G + G ST++DLS + ++
Sbjct: 135 LVGPSANTSGKPSPTTAQHVYHDLHGKIAGILDDGAT----KIGVESTVIDLSTDQP-AV 189
Query: 216 VRKG 219
+R G
Sbjct: 190 LRPG 193
>gi|336425993|ref|ZP_08606007.1| hypothetical protein HMPREF0994_02013 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336011458|gb|EGN41418.1| hypothetical protein HMPREF0994_02013 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 349
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 6/198 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +VA PT+T+YGL DA N + +YE K R + PL + + DI + A
Sbjct: 21 AGDILKAGGLVAFPTETVYGLGGDALNPDSSKKIYEAKGRPSDNPLIVHICRWEDIYRIA 80
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T E LAE PGP+T++ + + + E + VA+R P H R+L++
Sbjct: 81 EPVTEEVERLAEAFWPGPLTMILQKKDTVPKETTGGLDTVAIRFPSHPVARRLIEAAGGF 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T+ + + ++ +++DGG + STIVD+S I+R
Sbjct: 141 VAAPSANASGRPSPTMAEYVAEDMNGRIEMILDGGAVGI--GLESTIVDVSGPEPI-ILR 197
Query: 218 KGVCYDKIL-KILHKYHL 234
G ++L K+L + L
Sbjct: 198 PGYVTQEMLEKVLGEVEL 215
>gi|414082886|ref|YP_006991592.1| SUA5 domain-containing protein [Carnobacterium maltaromaticum
LMA28]
gi|412996468|emb|CCO10277.1| SUA5 domain protein [Carnobacterium maltaromaticum LMA28]
Length = 340
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 11/211 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ ++ G +VA PT+T+YGL DA N +A+ +Y K R + PL + ++ ++
Sbjct: 14 AAKLIQAGELVAFPTETVYGLGADALNEEAVKKVYAAKGRPSDNPLIVHIARREELESLV 73
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ ++ L+ + PGP+T++F + + + + VA+R+PD+ +L++L +
Sbjct: 74 AEIPAIAEPLIKKFWPGPLTLIFKAKPGFFSTSVTAGLESVAIRMPDNSLTLKLIQLAER 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PL SAN S PS T + + L +++ +IDGG ST++DL+ I+
Sbjct: 134 PLVGPSANTSGRPSPTSAEHVYHDLEGKIAGIIDGGATGI--GLESTVLDLTSPENPLIL 191
Query: 217 RKGVCYDKILK------ILHKYHLVEKNTFP 241
R G + LK + + +HL+ K P
Sbjct: 192 RPGAITQQDLKEVLGKDVTYDHHLIGKEEAP 222
>gi|403068624|ref|ZP_10909956.1| hypothetical protein ONdio_03419 [Oceanobacillus sp. Ndiop]
Length = 341
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 7/183 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK G +A PT+T+YGL DATN A+ +++ K R + PL V+ + + +
Sbjct: 23 AAERLKAGKTIAFPTETVYGLGADATNEAAVAKIFKAKGRPQDNPLIAHVATVEQLRRLV 82
Query: 100 DTHTV-SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D V + +L+ PGP+T + + + T + VRIPDH + LL+ D P
Sbjct: 83 DDIPVYAVQLMEAFSPGPLTYILPNNGTCADNVTAGQTTIGVRIPDHPVAQALLERADVP 142
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
+A SAN S +PS + +W+ L IDG + P G ST++D ++E + I+
Sbjct: 143 VAAPSANLSGKPSPTLADH---VWADLHGRIDGLLDGGPTGVGLESTVIDCTQE-IPIIL 198
Query: 217 RKG 219
R G
Sbjct: 199 RPG 201
>gi|310819587|ref|YP_003951945.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1]
gi|309392659|gb|ADO70118.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
Length = 313
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 17/207 (8%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-D 100
+ L+ G V+ALPT+T+YGLA +A + A+ ++ IK R PL + + + +P+WA D
Sbjct: 2 EILRSGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARD 61
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+++L A PGP+T+V R+ + VA+R+P+H +L + LA
Sbjct: 62 IPPEAWKLAAAFWPGPLTLVLRRTSRATDAVTGGQDTVALRVPNHPLALAVLSALGGGLA 121
Query: 161 LTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
SAN S ++ L S + +++DGG P G STIVDLS + +
Sbjct: 122 APSANRFGRVSPTTAGHVREDLGSDVDLILDGG----PCTVGVESTIVDLSSGDPAILRP 177
Query: 218 KGVCYDKILKILHKYHLVEKNTFPIPV 244
G+ +++ +L + P+PV
Sbjct: 178 GGLAAEELEHVLGR---------PVPV 195
>gi|260891996|ref|YP_003238093.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4]
gi|260864137|gb|ACX51243.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4]
Length = 338
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L++G +VA PT+T+YGL AT +A+ ++ +K R KPL + +++ ++ ++
Sbjct: 21 AGELLRRGELVAFPTETVYGLGAAATQDEALRRVFAVKGRPARKPLTLHLADPEEVFRYV 80
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + L++ PGP+T++ + L L V +R+PDH ++L+++ P
Sbjct: 81 KEVPSTARRLISSFWPGPLTLILPAASGLPPSLTAGGETVGIRVPDHAVAQELIRMAGLP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S P+ T + +L +++ V+DGG P ST+V++ E + +VR
Sbjct: 141 LAAPSANLSGRPAPTKAAHVLAELGGKIAGVLDGG--PTPLGIESTVVEVRGEEL--VVR 196
Query: 218 K 218
+
Sbjct: 197 R 197
>gi|237735225|ref|ZP_04565706.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|365832298|ref|ZP_09373834.1| Sua5/YciO/YrdC/YwlC family protein [Coprobacillus sp. 3_3_56FAA]
gi|374626785|ref|ZP_09699196.1| Sua5/YciO/YrdC/YwlC family protein [Coprobacillus sp. 8_2_54BFAA]
gi|229380970|gb|EEO31061.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|365260621|gb|EHM90570.1| Sua5/YciO/YrdC/YwlC family protein [Coprobacillus sp. 3_3_56FAA]
gi|373914032|gb|EHQ45866.1| Sua5/YciO/YrdC/YwlC family protein [Coprobacillus sp. 8_2_54BFAA]
Length = 201
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ + VVA PT+T++GL + +A++ LYE+K RD K +++ +S+ DI K+A
Sbjct: 15 AKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAISMMISKAEDIEKYAY 74
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+ +L+A +PG +TI+ + H++ ++ + +RIPD F+ LL P+
Sbjct: 75 VDETAKKLIAAFMPGMITIILKKRPHIDDYFTASLDTIGIRIPDDPFVLSLLDKT-GPML 133
Query: 161 LTSANESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
+TSAN S E S + K++ ++ +++ G IS + STIVDLS+ V I+R G
Sbjct: 134 VTSANLSGENSLVDDKAVMKVFHGKIPLIVKGESIS---KKASTIVDLSKGKV-EILRLG 189
>gi|163761038|ref|ZP_02168116.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43]
gi|162281819|gb|EDQ32112.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43]
Length = 323
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M I+ V+DP A + L++G VA+PT+T+YGLA DATN AI +YE K R P
Sbjct: 1 MTQILTVSDPNTLRAAVEALRRGEAVAVPTETVYGLAADATNPSAITAIYEAKGRPRFNP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELL-----PGPVTIV--FNRSEHLNLELNPNVTK 137
L +S ++D+ A H V F LAE L PGP+T+V N ++ +
Sbjct: 61 L---ISHVSDM-DMARAH-VLFTPLAEKLAAAFWPGPLTLVLPLNPDGGIHELATAGLET 115
Query: 138 VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISN 196
AVRIP+ F R L+K PLA SAN S S T + L ++++V+DGG
Sbjct: 116 AAVRIPE-GFARTLIKSFGGPLAAPSANRSGRISPTSARHVADDLDGRINLVLDGG---- 170
Query: 197 PERFG--STIVDLSEENVYSIVRKGVCYDKI 225
P R G STI+ ++ + + + G+ D I
Sbjct: 171 PCRVGVESTILAVNGDKLTLLRPGGIPVDAI 201
>gi|395784727|ref|ZP_10464549.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella melophagi K-2C]
gi|395421987|gb|EJF88209.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella melophagi K-2C]
Length = 320
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 22/200 (11%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK+G +VALPT+T+YGLA DATN KA+ ++ KKR PL + VS I +
Sbjct: 14 AVEVLKQGQLVALPTETVYGLAGDATNGKAVASIFTTKKRPQFNPLIVHVSSIVMAEHYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNV--------TKVAVRIPDHKFLRQL 151
+ +S + PGP+T+V L L++N N+ +AVR P F ++
Sbjct: 74 EIDLLSRRFMEAFWPGPLTLV------LPLKVNHNIHPLTTSGLDTLAVRFPVGGF-AEV 126
Query: 152 LKLMDSPLALTSANESNE-PSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ PLA SAN+S ST + F L + + ++IDGG+ + G STI+ +
Sbjct: 127 VQHFGRPLAAPSANQSGGLSSTSAASVFASLGASVPLIIDGGV----SKIGLESTIIKVC 182
Query: 209 EENVYSIVRKGVCYDKILKI 228
+N+Y + GV ++I ++
Sbjct: 183 NKNIYLLRPGGVTAEEIEEV 202
>gi|229525692|ref|ZP_04415097.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
VL426]
gi|229339273|gb|EEO04290.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
VL426]
Length = 329
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|255658857|ref|ZP_05404266.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM
20544]
gi|260849260|gb|EEX69267.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM
20544]
Length = 352
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 28 IVKVTDPKAA----LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
I+ +TD KA A + L+ G +VA PT+T+YGL + ++ A +YE K R +
Sbjct: 5 IITITDVKAQREELARAGKVLRGGGLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDN 64
Query: 84 PLAICVSEITDIPK-WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
PL + VS+ + A+ ++ +LLA +PGP+T++ R + + + V +R+
Sbjct: 65 PLILHVSDRAMVEMIAAEVTPMAEKLLAAFMPGPITLILRRKAIVPDRITGGLDTVGIRM 124
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG 201
P+H R +++ P+A SAN S PS T + + + ++ +++DGG P FG
Sbjct: 125 PEHPVARAMIRAAGVPIAAPSANISGRPSPTTAASVLRDMDGRIPLILDGG----PCHFG 180
Query: 202 --STIVDLSEENVYSIVRKGVCYDKIL 226
STIVD + V I+R G ++L
Sbjct: 181 VESTIVDCTGP-VAVILRPGAITREML 206
>gi|384424235|ref|YP_005633593.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3984-4]
gi|327483788|gb|AEA78195.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3984-4]
Length = 322
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 18 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 77
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 78 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 137
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 138 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 194
Query: 218 KG 219
G
Sbjct: 195 AG 196
>gi|206901525|ref|YP_002250522.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum
H-6-12]
gi|206740628|gb|ACI19686.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum
H-6-12]
Length = 337
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 9/186 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ L G +VA PT+T+YGL DA N +A+ ++ K R + P+ + V + + A
Sbjct: 20 AAQVLDAGGLVAFPTETVYGLGADALNPEAVRKIFVAKGRPQDNPIIVHVGKKEQVYSLA 79
Query: 100 DTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + ++ L+ PGP+T++F +S +N + KV +R P +K +LL++ P
Sbjct: 80 ENVSPIAERLMERFWPGPLTLIFYKSNLVNDIVTAGSPKVGIRQPMNKVALKLLEIFGRP 139
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + + L ++ ++IDGG +S FG ST++D++ + I
Sbjct: 140 IAAPSANASGRPSPTRAEHVIEDLGDRIDMIIDGGEVS----FGVESTVLDVTTDPPI-I 194
Query: 216 VRKGVC 221
R G C
Sbjct: 195 YRPGAC 200
>gi|153824989|ref|ZP_01977656.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|149741501|gb|EDM55531.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
Length = 329
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|254291504|ref|ZP_04962295.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|150422568|gb|EDN14524.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
Length = 328
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|417824149|ref|ZP_12470740.1| SUA5 domain protein [Vibrio cholerae HE48]
gi|419835940|ref|ZP_14359383.1| SUA5 domain protein [Vibrio cholerae HC-46B1]
gi|421353855|ref|ZP_15804187.1| SUA5 domain protein [Vibrio cholerae HE-45]
gi|422922334|ref|ZP_16955523.1| SUA5 domain protein [Vibrio cholerae BJG-01]
gi|423734487|ref|ZP_17707699.1| SUA5 domain protein [Vibrio cholerae HC-41B1]
gi|424008771|ref|ZP_17751718.1| SUA5 domain protein [Vibrio cholerae HC-44C1]
gi|340047834|gb|EGR08757.1| SUA5 domain protein [Vibrio cholerae HE48]
gi|341646481|gb|EGS70594.1| SUA5 domain protein [Vibrio cholerae BJG-01]
gi|395952980|gb|EJH63593.1| SUA5 domain protein [Vibrio cholerae HE-45]
gi|408630788|gb|EKL03360.1| SUA5 domain protein [Vibrio cholerae HC-41B1]
gi|408857805|gb|EKL97484.1| SUA5 domain protein [Vibrio cholerae HC-46B1]
gi|408865166|gb|EKM04575.1| SUA5 domain protein [Vibrio cholerae HC-44C1]
Length = 321
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 77 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 193
Query: 218 KG 219
G
Sbjct: 194 AG 195
>gi|229520488|ref|ZP_04409913.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
gi|297578682|ref|ZP_06940610.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|229342586|gb|EEO07579.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
gi|297536276|gb|EFH75109.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 329
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|410669046|ref|YP_006921417.1| hypothetical protein Tph_c27530 [Thermacetogenium phaeum DSM 12270]
gi|409106793|gb|AFV12918.1| hypothetical protein Tph_c27530 [Thermacetogenium phaeum DSM 12270]
Length = 357
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 110/207 (53%), Gaps = 8/207 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP AA+ +++G +VA PT+T+YGL + + +++ ++ +K R PL + V+ +
Sbjct: 15 DPDLIAEAAEVIRRGGLVAFPTETVYGLGGNGMDPESVKRIFRVKGRPPENPLILHVASL 74
Query: 93 TDIPKWADTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ A + + E+LA LPGP+T++ R+E + E+ + VA+R P ++ L
Sbjct: 75 EQARELASSWPPAAEVLARRFLPGPLTLILPRAEGIPDEVTAGLPTVALRYPANRIALAL 134
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ P+A SAN S PS T + L ++ +++DGG P G STI+ L+
Sbjct: 135 IAASGVPIAAPSANISGRPSPTRGEHVLADLGGKIEIILDGG----PAEVGVESTILSLA 190
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLV 235
+E+ + GV ++I +L + +V
Sbjct: 191 DEHPVLLRPGGVTREEIEAVLGRKVIV 217
>gi|421342855|ref|ZP_15793260.1| SUA5 domain protein [Vibrio cholerae HC-43B1]
gi|395943372|gb|EJH54047.1| SUA5 domain protein [Vibrio cholerae HC-43B1]
Length = 313
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 9 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 68
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 69 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 128
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 129 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 185
Query: 218 KG 219
G
Sbjct: 186 AG 187
>gi|167755050|ref|ZP_02427177.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402]
gi|167705100|gb|EDS19679.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium ramosum DSM 1402]
Length = 201
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ + VVA PT+T++GL + +A++ LYE+K RD K +++ +S+ DI K+A
Sbjct: 15 AKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAISMMISKAEDIEKYAY 74
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+ +L+A +PG +TI+ + H++ ++ + +RIPD F+ LL P+
Sbjct: 75 VDETAKKLIAAFMPGMITIILKKRPHIDDYFTASLDTIGIRIPDDPFVLSLLD-KTGPML 133
Query: 161 LTSANESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
+TSAN S E S + K++ ++ +++ G IS + STIVDLS+ V I+R G
Sbjct: 134 VTSANLSGENSLVDDKAVMKVFHGKIPLIVKGESIS---KEASTIVDLSKGKV-EILRLG 189
>gi|254225478|ref|ZP_04919088.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125621948|gb|EAZ50272.1| conserved hypothetical protein [Vibrio cholerae V51]
Length = 329
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|332687007|ref|YP_004456781.1| YrdC/Sua5 family protein [Melissococcus plutonius ATCC 35311]
gi|332371016|dbj|BAK21972.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Melissococcus plutonius ATCC
35311]
Length = 344
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 6/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ +K+G ++A PT+T+YGL +A + A+ +YE K R + PL I V + I K+
Sbjct: 14 IAAKFVKQGELIAFPTETVYGLGANALDEIAVKEVYEAKGRPSDNPLIIHVETVEQIKKY 73
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLE-LNPNVTKVAVRIPDHKFLRQLLKLMD 156
E LA+ PGP+T++FN E + +T A RIP+++ +L+
Sbjct: 74 VSNFPFIAEKLAKHFWPGPLTMIFNIKPGTFPEVVTGGLTTAAFRIPNNRLTLELIHQAG 133
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
PL SAN S +PS T+ + + L +++ V+DGG + ST++DL+ E V +I
Sbjct: 134 VPLVGPSANTSGKPSPTIAEHVYHDLQGKIAGVLDGG--ATQIGIESTVLDLTTE-VPTI 190
Query: 216 VRKGVCYDKILKIL 229
+R G+ + LK++
Sbjct: 191 LRPGLITKQELKVI 204
>gi|153828152|ref|ZP_01980819.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148876394|gb|EDL74529.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 329
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|424590320|ref|ZP_18029757.1| SUA5 domain protein [Vibrio cholerae CP1037(10)]
gi|408034868|gb|EKG71351.1| SUA5 domain protein [Vibrio cholerae CP1037(10)]
Length = 321
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 77 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 193
Query: 218 KG 219
G
Sbjct: 194 SG 195
>gi|319408205|emb|CBI81858.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 320
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK+G +VALPT+T+YGLA DATN KA+ ++ KKR PL + VS I +
Sbjct: 14 AVEVLKQGQLVALPTETVYGLAGDATNGKAVASIFTTKKRPQFNPLIVHVSSIVMAEHYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNV--------TKVAVRIPDHKFLRQL 151
+ +S + PGP+T+V L L++N N+ +AVR P F ++
Sbjct: 74 EIDLLSRRFMEAFWPGPLTLV------LPLKVNHNIHPLTTSGLDTLAVRFPVGGF-AEV 126
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ PLA SAN+S S T + F L + + ++IDGG+ + G STI+ +
Sbjct: 127 VQHFGRPLAAPSANQSGGLSPTSAASVFASLGASVPLIIDGGV----SKIGLESTIIKVC 182
Query: 209 EENVYSIVRKGVCYDKILKI 228
++N+Y + GV ++I ++
Sbjct: 183 DKNIYLLRPGGVTAEEIEEV 202
>gi|392544518|ref|ZP_10291655.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas piscicida JCM
20779]
Length = 336
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
TDP A AA+ + G +VA+PT+T+YGLA DA A+ ++ K R + PL + ++
Sbjct: 13 ATDPSAVAQAAELARDGQLVAVPTETVYGLAADARQPDAVKKIFAAKGRPADHPLIVHLA 72
Query: 91 EITDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
+ + + +W +T F+ LA+ PGP+TIV + H++ + V +R+P+H +
Sbjct: 73 DKSLVTEWVETLPDYFDALADAFWPGPLTIVAKKQAHVSDIVTGGHPTVGIRVPNHPAML 132
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVD 206
LL+ ++S LA SAN + S + L +++ V+DGG P G STIVD
Sbjct: 133 ALLQRINSGLAAPSANPYKKISPTTAEQVLFGLSGKIAAVLDGG----PCEVGLESTIVD 188
Query: 207 LSEENVYSIVRKG 219
+S I+R G
Sbjct: 189 ISSATP-RILRAG 200
>gi|134300997|ref|YP_001114493.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum reducens MI-1]
gi|134053697|gb|ABO51668.1| translation factor SUA5 [Desulfotomaculum reducens MI-1]
Length = 354
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 8/194 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +K+G +VA PT+T+YGL + + KA+ +Y K R + PL + V++ + + +
Sbjct: 24 AAAIIKRGGLVAFPTETVYGLGANGLDGKAVADIYRAKGRPSDNPLILHVADTNMVRELS 83
Query: 100 DTHTVSFELL-AELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
LL + PGP+T+V R+ H+ E+ + VAVR+P H L+K P
Sbjct: 84 KNLPPKATLLMKKFWPGPLTLVVPRASHIPREVTGGLATVAVRMPHHPVALALIKASGVP 143
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN+S PS + L + ++DGG P G ST++DL+ +
Sbjct: 144 IAAPSANKSGRPSPTNAEHVKLDLQGCIDAILDGG----PAGLGLESTVLDLTGAAPVIL 199
Query: 216 VRKGVCYDKILKIL 229
GV Y+++L+ L
Sbjct: 200 RPGGVTYEQLLEAL 213
>gi|417815974|ref|ZP_12462606.1| SUA5 domain protein [Vibrio cholerae HCUF01]
gi|418343377|ref|ZP_12950165.1| SUA5 domain protein [Vibrio cholerae HC-28A1]
gi|421316046|ref|ZP_15766617.1| SUA5 domain protein [Vibrio cholerae CP1032(5)]
gi|421331376|ref|ZP_15781856.1| SUA5 domain protein [Vibrio cholerae CP1046(19)]
gi|422306630|ref|ZP_16393803.1| SUA5 domain protein [Vibrio cholerae CP1035(8)]
gi|422891192|ref|ZP_16933577.1| SUA5 domain protein [Vibrio cholerae HC-40A1]
gi|422902074|ref|ZP_16937406.1| SUA5 domain protein [Vibrio cholerae HC-48A1]
gi|422925354|ref|ZP_16958379.1| SUA5 domain protein [Vibrio cholerae HC-38A1]
gi|423144673|ref|ZP_17132282.1| SUA5 domain protein [Vibrio cholerae HC-19A1]
gi|423149352|ref|ZP_17136680.1| SUA5 domain protein [Vibrio cholerae HC-21A1]
gi|423153169|ref|ZP_17140363.1| SUA5 domain protein [Vibrio cholerae HC-22A1]
gi|423730646|ref|ZP_17703960.1| SUA5 domain protein [Vibrio cholerae HC-17A1]
gi|423752607|ref|ZP_17711974.1| SUA5 domain protein [Vibrio cholerae HC-50A2]
gi|423819512|ref|ZP_17715770.1| SUA5 domain protein [Vibrio cholerae HC-55C2]
gi|423927125|ref|ZP_17730647.1| SUA5 domain protein [Vibrio cholerae HC-77A1]
gi|423952262|ref|ZP_17733976.1| SUA5 domain protein [Vibrio cholerae HE-40]
gi|423980293|ref|ZP_17737528.1| SUA5 domain protein [Vibrio cholerae HE-46]
gi|423997258|ref|ZP_17740517.1| SUA5 domain protein [Vibrio cholerae HC-02C1]
gi|424001668|ref|ZP_17744754.1| SUA5 domain protein [Vibrio cholerae HC-17A2]
gi|424005829|ref|ZP_17748809.1| SUA5 domain protein [Vibrio cholerae HC-37A1]
gi|424018903|ref|ZP_17758699.1| SUA5 domain protein [Vibrio cholerae HC-59B1]
gi|424023846|ref|ZP_17763506.1| SUA5 domain protein [Vibrio cholerae HC-62B1]
gi|424585968|ref|ZP_18025558.1| SUA5 domain protein [Vibrio cholerae CP1030(3)]
gi|424594667|ref|ZP_18034000.1| SUA5 domain protein [Vibrio cholerae CP1040(13)]
gi|424598533|ref|ZP_18037727.1| SUA5 domain protein [Vibrio Cholerae CP1044(17)]
gi|424606262|ref|ZP_18045222.1| SUA5 domain protein [Vibrio cholerae CP1050(23)]
gi|424616717|ref|ZP_18055404.1| SUA5 domain protein [Vibrio cholerae HC-42A1]
gi|424624448|ref|ZP_18062920.1| SUA5 domain protein [Vibrio cholerae HC-50A1]
gi|424640007|ref|ZP_18077897.1| SUA5 domain protein [Vibrio cholerae HC-56A1]
gi|424644640|ref|ZP_18082388.1| SUA5 domain protein [Vibrio cholerae HC-56A2]
gi|424648041|ref|ZP_18085711.1| SUA5 domain protein [Vibrio cholerae HC-57A1]
gi|424652319|ref|ZP_18089795.1| SUA5 domain protein [Vibrio cholerae HC-57A2]
gi|424656224|ref|ZP_18093522.1| SUA5 domain protein [Vibrio cholerae HC-81A2]
gi|443503175|ref|ZP_21070157.1| SUA5 domain protein [Vibrio cholerae HC-64A1]
gi|443507083|ref|ZP_21073867.1| SUA5 domain protein [Vibrio cholerae HC-65A1]
gi|443511200|ref|ZP_21077857.1| SUA5 domain protein [Vibrio cholerae HC-67A1]
gi|443514758|ref|ZP_21081289.1| SUA5 domain protein [Vibrio cholerae HC-68A1]
gi|443518563|ref|ZP_21084973.1| SUA5 domain protein [Vibrio cholerae HC-71A1]
gi|443523450|ref|ZP_21089679.1| SUA5 domain protein [Vibrio cholerae HC-72A2]
gi|443526865|ref|ZP_21092932.1| SUA5 domain protein [Vibrio cholerae HC-78A1]
gi|443531063|ref|ZP_21097078.1| SUA5 domain protein [Vibrio cholerae HC-7A1]
gi|340041700|gb|EGR02666.1| SUA5 domain protein [Vibrio cholerae HCUF01]
gi|341624235|gb|EGS49741.1| SUA5 domain protein [Vibrio cholerae HC-48A1]
gi|341625322|gb|EGS50785.1| SUA5 domain protein [Vibrio cholerae HC-40A1]
gi|341647667|gb|EGS71744.1| SUA5 domain protein [Vibrio cholerae HC-38A1]
gi|356420269|gb|EHH73797.1| SUA5 domain protein [Vibrio cholerae HC-21A1]
gi|356425531|gb|EHH78901.1| SUA5 domain protein [Vibrio cholerae HC-19A1]
gi|356431969|gb|EHH85168.1| SUA5 domain protein [Vibrio cholerae HC-22A1]
gi|356436638|gb|EHH89750.1| SUA5 domain protein [Vibrio cholerae HC-28A1]
gi|395921003|gb|EJH31823.1| SUA5 domain protein [Vibrio cholerae CP1032(5)]
gi|395932640|gb|EJH43383.1| SUA5 domain protein [Vibrio cholerae CP1046(19)]
gi|395961046|gb|EJH71390.1| SUA5 domain protein [Vibrio cholerae HC-56A2]
gi|395962187|gb|EJH72487.1| SUA5 domain protein [Vibrio cholerae HC-57A2]
gi|395965267|gb|EJH75442.1| SUA5 domain protein [Vibrio cholerae HC-42A1]
gi|395976453|gb|EJH85899.1| SUA5 domain protein [Vibrio cholerae CP1030(3)]
gi|408014405|gb|EKG52044.1| SUA5 domain protein [Vibrio cholerae HC-50A1]
gi|408025401|gb|EKG62459.1| SUA5 domain protein [Vibrio cholerae HC-56A1]
gi|408035241|gb|EKG71715.1| SUA5 domain protein [Vibrio cholerae HC-57A1]
gi|408035709|gb|EKG72166.1| SUA5 domain protein [Vibrio cholerae CP1040(13)]
gi|408044001|gb|EKG79957.1| SUA5 domain protein [Vibrio Cholerae CP1044(17)]
gi|408045259|gb|EKG81108.1| SUA5 domain protein [Vibrio cholerae CP1050(23)]
gi|408055904|gb|EKG90807.1| SUA5 domain protein [Vibrio cholerae HC-81A2]
gi|408625943|gb|EKK98835.1| SUA5 domain protein [Vibrio cholerae CP1035(8)]
gi|408626017|gb|EKK98905.1| SUA5 domain protein [Vibrio cholerae HC-17A1]
gi|408636157|gb|EKL08324.1| SUA5 domain protein [Vibrio cholerae HC-55C2]
gi|408638941|gb|EKL10801.1| SUA5 domain protein [Vibrio cholerae HC-50A2]
gi|408657036|gb|EKL28127.1| SUA5 domain protein [Vibrio cholerae HC-77A1]
gi|408660445|gb|EKL31462.1| SUA5 domain protein [Vibrio cholerae HE-40]
gi|408665519|gb|EKL36332.1| SUA5 domain protein [Vibrio cholerae HE-46]
gi|408847228|gb|EKL87299.1| SUA5 domain protein [Vibrio cholerae HC-37A1]
gi|408848416|gb|EKL88464.1| SUA5 domain protein [Vibrio cholerae HC-17A2]
gi|408853965|gb|EKL93744.1| SUA5 domain protein [Vibrio cholerae HC-02C1]
gi|408868911|gb|EKM08218.1| SUA5 domain protein [Vibrio cholerae HC-59B1]
gi|408871990|gb|EKM11217.1| SUA5 domain protein [Vibrio cholerae HC-62B1]
gi|443432486|gb|ELS75014.1| SUA5 domain protein [Vibrio cholerae HC-64A1]
gi|443436116|gb|ELS82239.1| SUA5 domain protein [Vibrio cholerae HC-65A1]
gi|443439904|gb|ELS89600.1| SUA5 domain protein [Vibrio cholerae HC-67A1]
gi|443444002|gb|ELS97284.1| SUA5 domain protein [Vibrio cholerae HC-68A1]
gi|443447612|gb|ELT04254.1| SUA5 domain protein [Vibrio cholerae HC-71A1]
gi|443450550|gb|ELT10825.1| SUA5 domain protein [Vibrio cholerae HC-72A2]
gi|443454735|gb|ELT18535.1| SUA5 domain protein [Vibrio cholerae HC-78A1]
gi|443458146|gb|ELT25542.1| SUA5 domain protein [Vibrio cholerae HC-7A1]
Length = 321
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 77 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 193
Query: 218 KG 219
G
Sbjct: 194 AG 195
>gi|255745495|ref|ZP_05419443.1| YrdC family protein [Vibrio cholera CIRS 101]
gi|262158430|ref|ZP_06029546.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
gi|262170292|ref|ZP_06037979.1| YrdC family protein [Vibrio cholerae RC27]
gi|440709351|ref|ZP_20890008.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 4260B]
gi|449056418|ref|ZP_21735086.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae O1 str. Inaba
G4222]
gi|255736570|gb|EET91967.1| YrdC family protein [Vibrio cholera CIRS 101]
gi|262021307|gb|EEY40021.1| YrdC family protein [Vibrio cholerae RC27]
gi|262029871|gb|EEY48519.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
gi|439974940|gb|ELP51076.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 4260B]
gi|448264241|gb|EMB01480.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae O1 str. Inaba
G4222]
Length = 322
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 18 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 77
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 78 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 137
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 138 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 194
Query: 218 KG 219
G
Sbjct: 195 AG 196
>gi|422909877|ref|ZP_16944519.1| SUA5 domain protein [Vibrio cholerae HE-09]
gi|341634133|gb|EGS58900.1| SUA5 domain protein [Vibrio cholerae HE-09]
Length = 321
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 77 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSSVVTGGLESVGIRVPAHPVLLDILKTHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 193
Query: 218 KG 219
G
Sbjct: 194 AG 195
>gi|332637162|ref|ZP_08416025.1| SUA5 family translation factor [Weissella cibaria KACC 11862]
Length = 342
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +K+G +VA PT+T+YGL DA N KA++ +Y K R + PL + V++ + ++A
Sbjct: 15 AVRAIKRGSLVAFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPLIVHVADKAQVDRFA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + +L+ PGP+T++ + ++ + + VA R+PD+ R L++ D+P
Sbjct: 75 VVNAWAEKLMDAFWPGPLTMILPVKPGTVSTTVTGGLDTVAARMPDNDVTRALIREADAP 134
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+ SAN S +PS T + + L ++S ++D G + G ST++DLS + ++
Sbjct: 135 MVGPSANTSGKPSPTTAQHVYHDLHGKISGILDDGAT----KIGVESTVIDLSTDTP-AV 189
Query: 216 VRKG 219
+R G
Sbjct: 190 LRPG 193
>gi|229515463|ref|ZP_04404922.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
gi|229347232|gb|EEO12192.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
Length = 328
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|15641092|ref|NP_230724.1| hypothetical protein VC1079 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121587076|ref|ZP_01676853.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121726330|ref|ZP_01679620.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147673908|ref|YP_001216548.1| hypothetical protein VC0395_A0598 [Vibrio cholerae O395]
gi|153213572|ref|ZP_01948862.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153816970|ref|ZP_01969637.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153821905|ref|ZP_01974572.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227081253|ref|YP_002809804.1| hypothetical protein VCM66_1035 [Vibrio cholerae M66-2]
gi|227117445|ref|YP_002819341.1| hypothetical protein VC395_1094 [Vibrio cholerae O395]
gi|229511006|ref|ZP_04400485.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
gi|229518127|ref|ZP_04407571.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
gi|229608343|ref|YP_002878991.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
gi|254848208|ref|ZP_05237558.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|298498815|ref|ZP_07008622.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|360034982|ref|YP_004936745.1| hypothetical protein Vch1786_I0583 [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740903|ref|YP_005332872.1| hypothetical protein O3Y_05020 [Vibrio cholerae IEC224]
gi|417813109|ref|ZP_12459766.1| SUA5 domain protein [Vibrio cholerae HC-49A2]
gi|417820501|ref|ZP_12467115.1| SUA5 domain protein [Vibrio cholerae HE39]
gi|418332120|ref|ZP_12943056.1| SUA5 domain protein [Vibrio cholerae HC-06A1]
gi|418336866|ref|ZP_12945764.1| SUA5 domain protein [Vibrio cholerae HC-23A1]
gi|418348534|ref|ZP_12953268.1| SUA5 domain protein [Vibrio cholerae HC-43A1]
gi|419825583|ref|ZP_14349087.1| SUA5 domain protein [Vibrio cholerae CP1033(6)]
gi|419829660|ref|ZP_14353146.1| SUA5 domain protein [Vibrio cholerae HC-1A2]
gi|419832632|ref|ZP_14356094.1| SUA5 domain protein [Vibrio cholerae HC-61A2]
gi|421320702|ref|ZP_15771259.1| SUA5 domain protein [Vibrio cholerae CP1038(11)]
gi|421324695|ref|ZP_15775221.1| SUA5 domain protein [Vibrio cholerae CP1041(14)]
gi|421328357|ref|ZP_15778871.1| SUA5 domain protein [Vibrio cholerae CP1042(15)]
gi|421334951|ref|ZP_15785418.1| SUA5 domain protein [Vibrio cholerae CP1048(21)]
gi|421338845|ref|ZP_15789280.1| SUA5 domain protein [Vibrio cholerae HC-20A2]
gi|421347008|ref|ZP_15797390.1| SUA5 domain protein [Vibrio cholerae HC-46A1]
gi|422906284|ref|ZP_16941117.1| SUA5 domain protein [Vibrio cholerae HC-70A1]
gi|422912873|ref|ZP_16947392.1| SUA5 domain protein [Vibrio cholerae HFU-02]
gi|422916845|ref|ZP_16951173.1| SUA5 domain protein [Vibrio cholerae HC-02A1]
gi|423155980|ref|ZP_17143084.1| SUA5 domain protein [Vibrio cholerae HC-32A1]
gi|423159808|ref|ZP_17146776.1| SUA5 domain protein [Vibrio cholerae HC-33A2]
gi|423164522|ref|ZP_17151283.1| SUA5 domain protein [Vibrio cholerae HC-48B2]
gi|423852845|ref|ZP_17719563.1| SUA5 domain protein [Vibrio cholerae HC-59A1]
gi|423880272|ref|ZP_17723168.1| SUA5 domain protein [Vibrio cholerae HC-60A1]
gi|423892347|ref|ZP_17726030.1| SUA5 domain protein [Vibrio cholerae HC-62A1]
gi|424015969|ref|ZP_17755810.1| SUA5 domain protein [Vibrio cholerae HC-55B2]
gi|424026637|ref|ZP_17766250.1| SUA5 domain protein [Vibrio cholerae HC-69A1]
gi|424601277|ref|ZP_18040430.1| SUA5 domain protein [Vibrio cholerae CP1047(20)]
gi|424610095|ref|ZP_18048949.1| SUA5 domain protein [Vibrio cholerae HC-39A1]
gi|424621666|ref|ZP_18060189.1| SUA5 domain protein [Vibrio cholerae HC-47A1]
gi|424636068|ref|ZP_18074083.1| SUA5 domain protein [Vibrio cholerae HC-55A1]
gi|443534837|ref|ZP_21100733.1| SUA5 domain protein [Vibrio cholerae HC-80A1]
gi|443538406|ref|ZP_21104261.1| SUA5 domain protein [Vibrio cholerae HC-81A1]
gi|9655547|gb|AAF94238.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548711|gb|EAX58760.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121631276|gb|EAX63649.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124115908|gb|EAY34728.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|126512557|gb|EAZ75151.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126520613|gb|EAZ77836.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|146315791|gb|ABQ20330.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227009141|gb|ACP05353.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|227012895|gb|ACP09105.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|229344842|gb|EEO09816.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
gi|229350971|gb|EEO15912.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
gi|229370998|gb|ACQ61421.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
gi|254843913|gb|EET22327.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|297543148|gb|EFH79198.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|340038132|gb|EGQ99106.1| SUA5 domain protein [Vibrio cholerae HE39]
gi|340042413|gb|EGR03378.1| SUA5 domain protein [Vibrio cholerae HC-49A2]
gi|341623978|gb|EGS49494.1| SUA5 domain protein [Vibrio cholerae HC-70A1]
gi|341638796|gb|EGS63434.1| SUA5 domain protein [Vibrio cholerae HC-02A1]
gi|341639698|gb|EGS64309.1| SUA5 domain protein [Vibrio cholerae HFU-02]
gi|356419532|gb|EHH73079.1| SUA5 domain protein [Vibrio cholerae HC-06A1]
gi|356432444|gb|EHH85641.1| SUA5 domain protein [Vibrio cholerae HC-23A1]
gi|356442280|gb|EHH95142.1| SUA5 domain protein [Vibrio cholerae HC-32A1]
gi|356447273|gb|EHI00064.1| SUA5 domain protein [Vibrio cholerae HC-43A1]
gi|356448924|gb|EHI01684.1| SUA5 domain protein [Vibrio cholerae HC-33A2]
gi|356455731|gb|EHI08367.1| SUA5 domain protein [Vibrio cholerae HC-48B2]
gi|356646136|gb|AET26191.1| conserved hypothetical protein [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794413|gb|AFC57884.1| hypothetical protein O3Y_05020 [Vibrio cholerae IEC224]
gi|395920365|gb|EJH31187.1| SUA5 domain protein [Vibrio cholerae CP1041(14)]
gi|395923684|gb|EJH34495.1| SUA5 domain protein [Vibrio cholerae CP1038(11)]
gi|395929863|gb|EJH40612.1| SUA5 domain protein [Vibrio cholerae CP1042(15)]
gi|395936812|gb|EJH47535.1| SUA5 domain protein [Vibrio cholerae CP1048(21)]
gi|395943793|gb|EJH54467.1| SUA5 domain protein [Vibrio cholerae HC-20A2]
gi|395946068|gb|EJH56732.1| SUA5 domain protein [Vibrio cholerae HC-46A1]
gi|395972805|gb|EJH82380.1| SUA5 domain protein [Vibrio cholerae HC-47A1]
gi|395978219|gb|EJH87609.1| SUA5 domain protein [Vibrio cholerae CP1047(20)]
gi|408008706|gb|EKG46665.1| SUA5 domain protein [Vibrio cholerae HC-39A1]
gi|408025905|gb|EKG62942.1| SUA5 domain protein [Vibrio cholerae HC-55A1]
gi|408609664|gb|EKK83040.1| SUA5 domain protein [Vibrio cholerae CP1033(6)]
gi|408621245|gb|EKK94248.1| SUA5 domain protein [Vibrio cholerae HC-1A2]
gi|408642609|gb|EKL14353.1| SUA5 domain protein [Vibrio cholerae HC-60A1]
gi|408643571|gb|EKL15291.1| SUA5 domain protein [Vibrio cholerae HC-59A1]
gi|408651276|gb|EKL22532.1| SUA5 domain protein [Vibrio cholerae HC-61A2]
gi|408658390|gb|EKL29460.1| SUA5 domain protein [Vibrio cholerae HC-62A1]
gi|408861235|gb|EKM00831.1| SUA5 domain protein [Vibrio cholerae HC-55B2]
gi|408880418|gb|EKM19343.1| SUA5 domain protein [Vibrio cholerae HC-69A1]
gi|443461988|gb|ELT33043.1| SUA5 domain protein [Vibrio cholerae HC-80A1]
gi|443465995|gb|ELT40654.1| SUA5 domain protein [Vibrio cholerae HC-81A1]
Length = 329
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|335438651|ref|ZP_08561388.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus tiamatea SARL4B]
gi|334891058|gb|EGM29315.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus tiamatea SARL4B]
Length = 298
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A ++ G +V PT+T+YGL DA + A+ ++E K+RD + PL++ V + ++
Sbjct: 10 ATAVVEDGGLVVYPTETVYGLGADALDPDAVESVFETKRRDRDDPLSLAVPTVEAALEYV 69
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T + + E LPGPVT+V +E + L +V VRIPDH R LL+ PL
Sbjct: 70 RPSTTEEQFMREFLPGPVTVVLEGAESVPDVLTGGRERVGVRIPDHDLARDLLERT-GPL 128
Query: 160 ALTSANESNEPSTLCINEFQ 179
TSAN S PS + E
Sbjct: 129 TATSANVSGRPSVTHLTELD 148
>gi|240103997|ref|YP_002960306.1| Translation factor , Sua5/YciO/YrdC/YwlC family [Thermococcus
gammatolerans EJ3]
gi|239911551|gb|ACS34442.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family
[Thermococcus gammatolerans EJ3]
Length = 343
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 4/195 (2%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ + +G +VA PT+T+YGL DA N +A+ ++E K R + PL I ++E + +
Sbjct: 17 VAARLIVEGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPLIIHIAESEWLFEL 76
Query: 99 A-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + V+ L PGP+T+V + E + + VAVR+P H +L++L
Sbjct: 77 AREVPEVALRLAERFWPGPLTLVLPKGEKVPSVTTGGLDTVAVRMPAHPIALELIRLSGR 136
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + ++ +IDGG P ST++DL+ E +
Sbjct: 137 PIAAPSANISGKPSPTEADHVVDDFYGRIECIIDGG--PTPIGVESTVLDLTGEVPVLLR 194
Query: 217 RKGVCYDKILKILHK 231
G+ + I +++ +
Sbjct: 195 PGGLPLEDIERVIGR 209
>gi|429887289|ref|ZP_19368812.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae PS15]
gi|429225726|gb|EKY31937.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae PS15]
Length = 322
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 18 AAQLLKQGHLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 77
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 78 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 137
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 138 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 194
Query: 218 KG 219
G
Sbjct: 195 AG 196
>gi|424660491|ref|ZP_18097738.1| SUA5 domain protein [Vibrio cholerae HE-16]
gi|408050400|gb|EKG85563.1| SUA5 domain protein [Vibrio cholerae HE-16]
Length = 329
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSSVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|340753278|ref|ZP_08690066.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 2_1_31]
gi|229422875|gb|EEO37922.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 2_1_31]
Length = 217
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ +I ++D K LA + LK+G ++ PTDT+YGLA TN ++IN +Y K R
Sbjct: 6 KIDNISDISDDKWTELADE-LKEGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELL----PGPVTIVFNRSEHL-NLELNPNVTKV 138
PL +S + + + A + E+L +L PG +T++ R EH+ N+ ++ T +
Sbjct: 65 PLIALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKEHIPNIMVSGGDT-I 123
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNP 197
VRIP+ +++ L LA TSAN S E + NE + + S++ +++DGG
Sbjct: 124 GVRIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNELSEAIKSRVDILVDGGECKLG 183
Query: 198 ERFGSTIVDLSEENVYSIVRKG-VCYDKILKILHK 231
E STI+DL+ +V I+R G + D+I KI+ +
Sbjct: 184 E--ASTIIDLT-SDVPKILRNGAISTDEITKIIGR 215
>gi|224543569|ref|ZP_03684108.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM
15897]
gi|224523496|gb|EEF92601.1| Sua5/YciO/YrdC/YwlC family protein [Catenibacterium mitsuokai DSM
15897]
Length = 206
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+ +V +P+ L ++ G +VA PT+T+YG+AC + K ++ + EIKKR+ NK + +
Sbjct: 1 MTQVIEPEQMDLLVSAVRDGKIVAFPTETVYGVACLFDDLKGLDRIMEIKKRNPNKAVTL 60
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
+S+ D+ K+ + ++ + +PG +TIV R + ++ + +RIPD F
Sbjct: 61 MLSKKDDVKKYGLVDEGTQRVIDKFMPGRMTIVLKRLDSVDSRHVSGKDTIGIRIPDSSF 120
Query: 148 LRQLLKLMD--SPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTI 204
+L L+D PL++TSAN S + +T E +L Q+ +V+ G S ST+
Sbjct: 121 ---VLSLIDQTGPLSVTSANLSGQGNTTNEKEVLAQLDGQIDMVVRGQTASAT---ASTV 174
Query: 205 VDLSEENVYSIVRKGV 220
VDLS+ +V I+R+G+
Sbjct: 175 VDLSQGDV-RILREGL 189
>gi|433449026|ref|ZP_20411891.1| translation factor SUA5 [Weissella ceti NC36]
gi|429539415|gb|ELA07452.1| translation factor SUA5 [Weissella ceti NC36]
Length = 338
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 7/183 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A ++ G +V+ P++T+YGL +A N +A+ +Y K R + PL + V++I + +A
Sbjct: 14 AVSAIQAGQLVSFPSETVYGLGANAFNEQAVQQVYAAKGRPSDNPLIVHVADIAQVTDFA 73
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T+ + L+A PGP+T++ + + L+ + + VA+R+PD+ RQL++ P
Sbjct: 74 LTNAWADTLMATFWPGPLTMILPVKPDALSETVTGGLDTVAIRMPDNDVTRQLIRDAGVP 133
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLS-VVIDGGIISNPERFGSTIVDLSEENVYSIV 216
L SAN S PS TL + + L +++ VV DG + E STI+DLS E +++
Sbjct: 134 LVGPSANTSGRPSPTLAAHVYHDLQGKIAGVVDDGATMIGVE---STIIDLSTEQP-TVL 189
Query: 217 RKG 219
R G
Sbjct: 190 RPG 192
>gi|297717892|gb|ADI50089.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13]
Length = 310
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 9/211 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G VVA+PT+T+YGLA DATN KA+ +Y IK+R PL I +
Sbjct: 15 ACELLSSGDVVAIPTETVYGLAADATNDKAVAKIYAIKQRPEFNPLIIHCHSAQQAKSYV 74
Query: 100 DTHTVSFELLAELLPGPVTIVFNR--SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +L PGP+T V R ++ + + +AVRIP H + L+K
Sbjct: 75 QFDKRAEKLADAFWPGPITFVLKRYPDSAISFLASSGLETLAVRIPAHPVAQALIKAYSK 134
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S S T I+ L +++ ++IDGG R G STI+DL+E +
Sbjct: 135 PLAAPSANLSQTISPTSAIDVQASLGNRVPLIIDGG----QTRVGVESTIIDLTEAIPHI 190
Query: 215 IVRKGVCYDKILKILHKYHLVEKNTFPIPVL 245
+ G+ ++I ++ L + P +
Sbjct: 191 LRPGGISVEQIQAVIGTVDLSRRAGIKAPGM 221
>gi|330719387|ref|ZP_08313987.1| putative translation factor [Leuconostoc fallax KCTC 3537]
Length = 337
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 114/199 (57%), Gaps = 10/199 (5%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L A + L +G VVA PT+T+YGL AT+ A+ ++ K R + PL + V++ + +
Sbjct: 14 LFAGKLLSQGEVVAFPTETVYGLGAVATDEVAVRKVFTAKGRPSDNPLIVTVADKAMVQQ 73
Query: 98 WADTHTVSFELLAELLPGPVTIVF-NRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+A + +S +L+A PG +TI+ R++ ++ + + VA R+PD++ R +++
Sbjct: 74 FAVENDMSQKLMAAFWPGSLTIILPMRAQAFSMTVTGGLNTVAFRLPDNEVARAVIRAAK 133
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
+P+ SAN S +PS T + + + +++ ++D G P G ST++D+S NV
Sbjct: 134 APIVGPSANTSGKPSPTTAQHVWHDMAGKIAAIVDDG----PTTVGVESTVIDVS-GNVP 188
Query: 214 SIVRKG-VCYDKILKILHK 231
+I+R G + ++++ +L +
Sbjct: 189 TILRPGAITQEQLVAVLAQ 207
>gi|331002522|ref|ZP_08326040.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410338|gb|EGG89772.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 366
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +VA PT+T+YGL +A S+A +Y K R + PL + +S+ D+ A
Sbjct: 28 AADIIRSGGLVAFPTETVYGLGANALMSEAAKKIYAAKGRPSDNPLIVHISKTEDVNNIA 87
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
F LAE PGP+T+V + + + + + VAVR+PD+ R L+++ P
Sbjct: 88 REIPEIFYKLAECFWPGPMTVVLKKRSIIPDDTSGGLDTVAVRLPDNNIARALIEVSKVP 147
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + F + ++ ++IDGG + G STIVDL+ ++ ++
Sbjct: 148 IAAPSANTSGRPSPTRASHVFDDMDGRIDMIIDGGTVG----IGVESTIVDLT-GDIPTL 202
Query: 216 VRKGVCYDKILK 227
+R G ++L+
Sbjct: 203 LRPGAVTFEMLR 214
>gi|410455325|ref|ZP_11309208.1| integral membrane protein [Bacillus bataviensis LMG 21833]
gi|409929523|gb|EKN66601.1| integral membrane protein [Bacillus bataviensis LMG 21833]
Length = 347
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 5/198 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA L++ VVALPT+T+YGL +A + +A+ +YE K R + PL I ++E + ++
Sbjct: 24 AADLLRRNEVVALPTETVYGLGGNAESDEAVAKIYEAKGRPGDNPLIIHIAEREQLTRFV 83
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ ++ L+ PGP+TI+F E L+ + + VAVR+PDH LLK
Sbjct: 84 AEVPVMAETLMDAFWPGPLTIIFKMKEGVLSEKATAGLETVAVRMPDHPVALSLLKTCGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ V+DGG + ST+VD + +
Sbjct: 144 PIAAPSANSSGKPSPTTAEHVLEDLNGKIAGVVDGG--ATGVGVESTVVDCTAAIPVILR 201
Query: 217 RKGVCYDKILKILHKYHL 234
GV +++ ++ + H+
Sbjct: 202 PGGVTKEQLEAVVGEVHV 219
>gi|421350857|ref|ZP_15801222.1| SUA5 domain protein [Vibrio cholerae HE-25]
gi|395951302|gb|EJH61916.1| SUA5 domain protein [Vibrio cholerae HE-25]
Length = 320
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 77 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 193
Query: 218 KG 219
G
Sbjct: 194 AG 195
>gi|452993889|emb|CCQ94715.1| putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Clostridium ultunense Esp]
Length = 352
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 113/202 (55%), Gaps = 9/202 (4%)
Query: 26 CSIVKVTD--PKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV 81
I+KV + P+ L+ A+ +K+G +VA PT+T+YGL + N +A+ ++ K R
Sbjct: 6 TKIIKVNEINPEEELILEGAKFIKEGKLVAFPTETVYGLGANGLNEEAVKEIFVAKGRPQ 65
Query: 82 NKPLAICVSEITDIPKWADTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAV 140
+ PL + VS I DI + + E L+ + PGP+T++F +S+ + + + VA+
Sbjct: 66 DNPLILHVSSIEDIRPLVKSVSKEAEILMKKFWPGPLTLLFKKSKKVPNIITAGLDTVAI 125
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPER 199
R+P++ L+K P+A SAN S +PS T + + L+ ++ ++IDGG S
Sbjct: 126 RMPNNPIALGLIKNSGMPIAAPSANTSGKPSPTSADHVIEDLYGKVHMIIDGG--STGVG 183
Query: 200 FGSTIVDLSEENVYSIVRKGVC 221
ST++DL+EE + I+R G
Sbjct: 184 LESTVLDLTEE-IPMILRPGAI 204
>gi|219847348|ref|YP_002461781.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM
9485]
gi|219541607|gb|ACL23345.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM
9485]
Length = 345
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 5/190 (2%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
T P+A +AA+ L++G +VA PT+T+YGL A + A+ ++ K R + PL + ++
Sbjct: 8 TSPQAIAVAAELLRRGELVAFPTETVYGLGGHALDQTAVAAIFAAKGRPTSDPLIVHLAT 67
Query: 92 ITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
D+P+ A D ++ EL PGP+T++ R H+ + VAVR+P H
Sbjct: 68 AADLPRVAVDIPPLATELATHFWPGPLTLIVPRHPHVPRAVTAGRETVAVRVPSHPVAHA 127
Query: 151 LLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSE 209
LL P+A SAN S T + L +++ +IDGG P ST++D +
Sbjct: 128 LLVAAGVPVAAPSANRFGHTSPTTADHVLADLDGRIAAIIDGG--PTPIGIESTVLDCT- 184
Query: 210 ENVYSIVRKG 219
N +++R G
Sbjct: 185 TNPPTLLRPG 194
>gi|313895787|ref|ZP_07829341.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975212|gb|EFR40673.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137
str. F0430]
Length = 355
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 8/185 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +VA PT+T+YGL ++ A +Y K R + PL + +++++ A
Sbjct: 17 AARMIRDGALVAFPTETVYGLGASGLDAAACARIYAAKGRPSDNPLILHIADLSMAADAA 76
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T + LL PGP+T++ ++ H+ + ++ V VR PDH R L++ P
Sbjct: 77 RTIPPAAAHLLTAFAPGPITVILPKAAHIPDIVTGGLSTVGVRCPDHDIARALIRAAGVP 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + L ++ ++DGG R+G STIVD +E+ V ++
Sbjct: 137 VAAPSANTSGRPSPTTAVMVADDLAGRIPCILDGGAC----RWGVESTIVDCTEDGVVTV 192
Query: 216 VRKGV 220
+R G
Sbjct: 193 LRPGA 197
>gi|47096963|ref|ZP_00234539.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
1/2a F6854]
gi|254828117|ref|ZP_05232804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
N3-165]
gi|254913441|ref|ZP_05263453.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254937822|ref|ZP_05269519.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900]
gi|386044843|ref|YP_005963648.1| translation factor [Listeria monocytogenes 10403S]
gi|386048208|ref|YP_005966540.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes J0161]
gi|386054730|ref|YP_005972288.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes Finland
1998]
gi|404411784|ref|YP_006697372.1| translation factor, SUA5 type [Listeria monocytogenes SLCC5850]
gi|47014673|gb|EAL05630.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
1/2a str. F6854]
gi|258600502|gb|EEW13827.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
N3-165]
gi|258610426|gb|EEW23034.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900]
gi|293591448|gb|EFF99782.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345535199|gb|AEO04640.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes J0161]
gi|345538077|gb|AEO07517.1| translation factor [Listeria monocytogenes 10403S]
gi|346647381|gb|AEO40006.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes Finland
1998]
gi|404231610|emb|CBY53014.1| translation factor, SUA5 type [Listeria monocytogenes SLCC5850]
Length = 345
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN A+ +YE K R + PL + ++ + ++
Sbjct: 21 AAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDQFV 80
Query: 100 DTHTV-SFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ +
Sbjct: 81 ASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIGTANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG + ST++D S E +
Sbjct: 141 PIAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGG--ATGVGLESTVIDCSLEIPIILR 198
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
GV ++I +I+ + NT
Sbjct: 199 PGGVTKEQIEQIIGPVDISTNNT 221
>gi|373459722|ref|ZP_09551489.1| Sua5/YciO/YrdC/YwlC family protein [Caldithrix abyssi DSM 13497]
gi|371721386|gb|EHO43157.1| Sua5/YciO/YrdC/YwlC family protein [Caldithrix abyssi DSM 13497]
Length = 391
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK-WAD 100
+ LK G V+ PT+TLYGL DA N KA+ L+ +K R N+P+++ V+ + + + +A
Sbjct: 21 EVLKNGGVIVYPTNTLYGLGVDAFNFKALERLFVVKHRSPNQPISLMVASLDQLEQLFAV 80
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNL---ELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++L ++LPG T++ NL P KV R+ + F ++LL +
Sbjct: 81 MEPREKQILQKILPGKFTVILRSKFKKNLAHFASGPQADKVGFRVAELPFNQKLLLKFGN 140
Query: 158 PLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+ TSAN S +P+ + E + +L +++D G P+ GSTI+D+++ Y I+
Sbjct: 141 PITSTSANISGKPNAATVQEIIAQFGDRLDLILDAG--PAPDLKGSTIIDMTKRP-YLIL 197
Query: 217 RKG-VCYDKILKILHKYHLVEKNT 239
R+G V K+ KI ++++ T
Sbjct: 198 REGSVKKSKVEKIFAPEKVLKRKT 221
>gi|410461457|ref|ZP_11315107.1| sua5/yciO/yrdC/ywlC family protein [Bacillus azotoformans LMG 9581]
gi|409925744|gb|EKN62946.1| sua5/yciO/yrdC/ywlC family protein [Bacillus azotoformans LMG 9581]
Length = 349
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G VVA PT+T+YGL +A + +AI+ +YE K R + PL + +S I + K
Sbjct: 27 AAMWISRGEVVAFPTETVYGLGANALSDQAISKIYEAKGRPSDNPLIVHISNINQLNKLV 86
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ VS +L+ PGP+TI+F + ++ ++ + VA+R+PDH L++ D P
Sbjct: 87 KNIPAVSQKLMDSFWPGPLTIIFESNSVVSPKVTAGLQTVAIRMPDHPVALALIEAADVP 146
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+A SAN S +PS T + L +++ V+DGG
Sbjct: 147 VAAPSANLSGKPSPTNADHVLHDLNGRIAGVVDGG 181
>gi|418354937|ref|ZP_12957658.1| SUA5 domain protein [Vibrio cholerae HC-61A1]
gi|356453339|gb|EHI06002.1| SUA5 domain protein [Vibrio cholerae HC-61A1]
Length = 313
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 9 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 68
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 69 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 128
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 129 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 185
Query: 218 KG 219
G
Sbjct: 186 AG 187
>gi|258517250|ref|YP_003193472.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780955|gb|ACV64849.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 343
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 45 KKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIPK 97
K G +VA PT+T+YGL +A +S+A+ L++ K R + PL + V++ + DIP+
Sbjct: 29 KTGGLVAFPTETVYGLGANALDSRAVRRLFQAKARPADNPLTLHVADLKTAFAYLKDIPQ 88
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A L + PGP+T+V HL E+ + VR+PDH L++
Sbjct: 89 EAHA------LAGQFWPGPLTLVLPFQGHLPAEVTGGRPALGVRMPDHPVALALIEQSGV 142
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S PS T + Q L ++ V+DGG P +G ST++D + E
Sbjct: 143 PLVAPSANLSGRPSPTTADHVLQDLSGRIEAVLDGG----PSEWGLESTVIDFTGEKPV- 197
Query: 215 IVRKGVCYDKILK 227
++R GV + L+
Sbjct: 198 LLRPGVLTQEDLR 210
>gi|16804579|ref|NP_466064.1| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e]
gi|255026494|ref|ZP_05298480.1| hypothetical protein LmonocytFSL_09443 [Listeria monocytogenes FSL
J2-003]
gi|255028536|ref|ZP_05300487.1| hypothetical protein LmonL_03806 [Listeria monocytogenes LO28]
gi|284802979|ref|YP_003414844.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578]
gi|284996120|ref|YP_003417888.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923]
gi|386051512|ref|YP_005969503.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
R2-561]
gi|404285034|ref|YP_006685931.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2372]
gi|404414559|ref|YP_006700146.1| translation factor, SUA5 type [Listeria monocytogenes SLCC7179]
gi|405759591|ref|YP_006688867.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2479]
gi|16412029|emb|CAD00619.1| lmo2541 [Listeria monocytogenes EGD-e]
gi|284058541|gb|ADB69482.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578]
gi|284061587|gb|ADB72526.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923]
gi|346425358|gb|AEO26883.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
R2-561]
gi|404234536|emb|CBY55939.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2372]
gi|404237473|emb|CBY58875.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2479]
gi|404240258|emb|CBY61659.1| translation factor, SUA5 type [Listeria monocytogenes SLCC7179]
Length = 345
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN A+ +YE K R + PL + ++ + ++
Sbjct: 21 AAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDQFV 80
Query: 100 DTHTV-SFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ +
Sbjct: 81 ASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIGTANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG + ST++D S E +
Sbjct: 141 PIAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGG--ATGVGLESTVIDCSLEIPIILR 198
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
GV ++I +I+ + NT
Sbjct: 199 PGGVTKEQIEQIIGPVDISTNNT 221
>gi|379727082|ref|YP_005319267.1| YrdC/Sua5 family protein [Melissococcus plutonius DAT561]
gi|376317985|dbj|BAL61772.1| YrdC/Sua5 family protein [Melissococcus plutonius DAT561]
Length = 344
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 109/194 (56%), Gaps = 6/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ +K+G ++A PT+T+YGL +A + A+ +YE K R + PL I V + I K+
Sbjct: 14 IAAKLVKQGELIAFPTETVYGLGANALDEIAVKEVYEAKGRPSDNPLIIHVETVEQIKKY 73
Query: 99 -ADTHTVSFELLAELLPGPVTIVFNRSEHLNLE-LNPNVTKVAVRIPDHKFLRQLLKLMD 156
+D ++ +L PGP+T++FN E + +T A RIP+++ +L+
Sbjct: 74 VSDFPLIAEKLAKHFWPGPLTMIFNIKPGTFPEVVTGGLTTAAFRIPNNRLTLELIHQAG 133
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
PL SAN S +PS T + + L +++ V+DGG + ST++DL+ E V +I
Sbjct: 134 VPLVGPSANTSGKPSPTTAEHVYHDLQGKIAGVLDGG--ATQIGIESTVLDLTTE-VPTI 190
Query: 216 VRKGVCYDKILKIL 229
+R G+ + LK++
Sbjct: 191 LRPGLITKQELKVI 204
>gi|320352189|ref|YP_004193528.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
gi|320120691|gb|ADW16237.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
Length = 205
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 25 MCSIVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M IV++ P+ A L+ G V+ PTDT+YG+ CD N KA+ +Y+IK+R
Sbjct: 1 MARIVEINPINPQPRLIAQAVDILQHGGVICYPTDTMYGVGCDIFNQKAVKRVYQIKRRP 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAV 140
+KP + + +T+I ++ ++ L+ + LPGP T V + ++ + + V +
Sbjct: 61 KDKPFSFMCASLTNISQYGHVGNTAYRLMRKNLPGPYTFVLSGTKMVPKIMLTKQKTVGI 120
Query: 141 RIPDHKFLRQLLKLMDSPLALTSA--NESNEPSTLCINEFQKLWSQLSVVIDGG-IISNP 197
R+P+H +L+L+ +P+ TSA + ++P ++ + Q+ ++ID G I+ P
Sbjct: 121 RVPNHPVCLAMLELLGNPVLNTSAMIEDDDQPVRTAMDVERLFGKQVDLIIDSGEIVPAP 180
Query: 198 ERFGSTIVDLSEENVYSIVRKG 219
S I LSE+ ++R+G
Sbjct: 181 S---SVISLLSEQP--EVLREG 197
>gi|170078316|ref|YP_001734954.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002]
gi|169885985|gb|ACA99698.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002]
Length = 223
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 104/192 (54%), Gaps = 10/192 (5%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
AQ L+ G V+ PTDT+Y + CD T +A+ + ++K+ +KPL S +++I ++A
Sbjct: 21 AQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLSNISEYAL 80
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++ ++ +PGP T + ++ + L ++P +R+PDH + LL+ + +P+
Sbjct: 81 VSDEAYRIMKRAIPGPYTFLLPATKQVPKLVMSPKRRSTGIRVPDHAICQGLLQALGNPI 140
Query: 160 ALTSA---NESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
TSA +E EP TL + + F L + ++ID S P STI+D +
Sbjct: 141 ISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSD--SEPGTKTSTILDFCDRQP- 197
Query: 214 SIVRKGVCYDKI 225
+++RKG+ +D +
Sbjct: 198 TLIRKGLGWDAL 209
>gi|448492245|ref|ZP_21608839.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum californiensis DSM
19288]
gi|445691704|gb|ELZ43888.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum californiensis DSM
19288]
Length = 208
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
+ +G +V PT+T+YGL DA ++ A+ +E+K RD + PL++ V+ + D ++
Sbjct: 22 VDRGDLVVYPTETVYGLGADALHAAAVERAFELKGRDRSNPLSLGVASVDDALRYTRPTE 81
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
++ LPGPVT+V R + + L +V +R+PDH R LL PL TS
Sbjct: 82 LAVAFARAFLPGPVTVVVERGDRVPDALTAGRDRVGIRVPDHDLARALLAET-GPLTATS 140
Query: 164 ANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCY 222
AN S S + ++ + VIDGG E ST+VD ++ R+G
Sbjct: 141 ANVSGTGSVTNPADLDDRIRDGVDAVIDGGETPGTE---STVVDPEAGTIH---RRGAMA 194
Query: 223 DKI 225
I
Sbjct: 195 GAI 197
>gi|344924671|ref|ZP_08778132.1| Sua5/YciO/YrdC family protein [Candidatus Odyssella
thessalonicensis L13]
Length = 311
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 9/211 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G VVA+PT+T+YGLA DATN KA+ +Y IK+R PL I +
Sbjct: 15 ACELLSSGDVVAIPTETVYGLAADATNDKAVAKIYAIKQRPEFNPLIIHCHSAQQAKSYV 74
Query: 100 DTHTVSFELLAELLPGPVTIVFNR--SEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +L PGP+T V R ++ + + +AVRIP H + L+K
Sbjct: 75 QFDKRAEKLADAFWPGPITFVLKRYPDSAISFLASSGLETLAVRIPAHPVAQALIKAYSK 134
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S S T I+ L +++ ++IDGG R G STI+DL+E +
Sbjct: 135 PLAAPSANLSQTISPTSAIDVQASLGNRVPLIIDGG----QTRVGVESTIIDLTEAIPHI 190
Query: 215 IVRKGVCYDKILKILHKYHLVEKNTFPIPVL 245
+ G+ ++I ++ L + P +
Sbjct: 191 LRPGGISVEQIQAVIGTVDLSRRAGIKAPGM 221
>gi|146304759|ref|YP_001192075.1| translation factor SUA5 [Metallosphaera sedula DSM 5348]
gi|145703009|gb|ABP96151.1| translation factor SUA5 [Metallosphaera sedula DSM 5348]
Length = 350
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +VA PT+T+YGL +A + KA +++ K+R ++ PL + +++++ + + +
Sbjct: 19 AAEVIRSGGLVAFPTETVYGLGGNALDPKAAEKVFKAKRRPMDNPLIVHIADLSQLEEVS 78
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +L + PGP+T + R+ + LE + VAVR+P H QL++ P
Sbjct: 79 VDVPPEVLDLAQRVWPGPLTFILKRNPRVPLETTGGLDTVAVRMPAHPIALQLIRESGVP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN + +PS TL + Q L + VVIDGG FG STI++L+
Sbjct: 139 IAAPSANLATKPSPTLAEHVIQDLDGSVDVVIDGGETF----FGVESTIINLT 187
>gi|169832288|ref|YP_001718270.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169639132|gb|ACA60638.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 358
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 4/192 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL +A + +A+ ++ +K R + PL + V E +I
Sbjct: 31 AAALIREGGLVAFPTETVYGLGANALDRQAVKRVFAVKGRPDDNPLIVHVGERAEISGLV 90
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
S E L L PGP+T+V RS+ ++ + + KVAVR+P H L++ P
Sbjct: 91 RDLPPSAEKLIGLFWPGPLTLVLPRSDRVSPAVTAGLDKVAVRMPAHPVALALIREAGVP 150
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T + + L ++ V+DGG + P ST++DL+ +
Sbjct: 151 VAAPSANTSGRPSPTTAAHVLEDLDGRIEAVLDGGPV--PVGVESTVLDLTVSPPVILRP 208
Query: 218 KGVCYDKILKIL 229
GV ++ +L
Sbjct: 209 GGVTGRQLAAVL 220
>gi|423461891|ref|ZP_17438687.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG5X2-1]
gi|401134068|gb|EJQ41687.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG5X2-1]
Length = 347
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|339480541|ref|ZP_08656200.1| SUA5 family translation factor (putative) [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 337
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 7/218 (3%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M + + TD ++ A+ L++G VVA PT+T+YGL DATN A+ ++ K R + P
Sbjct: 1 MKTTIFKTDEQSLAEASALLQQGEVVAFPTETVYGLGADATNEAAVQKVFTAKGRPSDNP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIP 143
L + V++ + + ++ + L+A PG +TI+ + + + + + VA R+P
Sbjct: 61 LIMTVADESQLDEFVVISEAAKTLMAAFWPGSLTIILPIKPGRVEMIVTGGLQTVAFRLP 120
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG-- 201
D++ RQL+++ P+ SAN S +PS Q +W + I G + P G
Sbjct: 121 DNEAARQLIRVAGVPIVGPSANISGKPSPTTA---QHVWHDMQGKIAGIVDDGPTTVGVE 177
Query: 202 STIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
ST++D+S +I+R G + L+ + +V+ +
Sbjct: 178 STVIDMS-ATTPTILRPGAVTQQQLEAVLGVRVVDATS 214
>gi|415883774|ref|ZP_11545803.1| sua5/yciO/yrdC/ywlC family protein [Bacillus methanolicus MGA3]
gi|387591569|gb|EIJ83886.1| sua5/yciO/yrdC/ywlC family protein [Bacillus methanolicus MGA3]
Length = 346
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 9/195 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+ V+A PT+T+YGL +A + +A+ ++E K R + PL I ++EI + ++A
Sbjct: 24 AASLLKQNEVIAFPTETVYGLGGNAESDEAVQKIFEAKGRPSDNPLIIHIAEIKQLNQFA 83
Query: 100 DTHTVSFELLAELL-PGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ ++L E PGP+T+V N R+ L+ + ++ VAVR+PDH ++K
Sbjct: 84 ENIPDHAKILMETFWPGPLTLVLNKRAGFLSEKATAGLSTVAVRMPDHPVALAVIKESGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + L +++ ++DGG P G ST++D +E
Sbjct: 144 PIAAPSANRSGKPSPTTAKHVADDLHGRIAGIVDGG----PTGVGVESTVLDCTEPVPVI 199
Query: 215 IVRKGVCYDKILKIL 229
+ G+ ++I K++
Sbjct: 200 LRPGGITKEQIEKVI 214
>gi|255016728|ref|ZP_05288854.1| hypothetical protein LmonF_00646 [Listeria monocytogenes FSL
F2-515]
Length = 344
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN A+ +YE K R + PL + ++ + ++
Sbjct: 20 AAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDQFV 79
Query: 100 DTHTV-SFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ +
Sbjct: 80 ASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIGTANI 139
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG + ST++D S E +
Sbjct: 140 PIAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGG--ATGVGLESTVIDCSLEIPIILR 197
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
GV ++I +I+ + NT
Sbjct: 198 PGGVTKEQIEQIIGPVDISTNNT 220
>gi|229505324|ref|ZP_04394834.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
gi|229357547|gb|EEO22464.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
Length = 336
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 32 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 91
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 92 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 151
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 152 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 208
Query: 218 KG 219
G
Sbjct: 209 AG 210
>gi|46908713|ref|YP_015102.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
4b str. F2365]
gi|47094309|ref|ZP_00232012.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b
H7858]
gi|226225089|ref|YP_002759196.1| yeast translation initiation protein [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|254825336|ref|ZP_05230337.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
J1-194]
gi|254853930|ref|ZP_05243278.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
R2-503]
gi|254932217|ref|ZP_05265576.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262]
gi|254993431|ref|ZP_05275621.1| yeast translation initiation protein [Listeria monocytogenes FSL
J2-064]
gi|255519763|ref|ZP_05387000.1| yeast translation initiation protein [Listeria monocytogenes FSL
J1-175]
gi|300764959|ref|ZP_07074947.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017]
gi|386733226|ref|YP_006206722.1| translation initiation protein [Listeria monocytogenes 07PF0776]
gi|404282099|ref|YP_006682997.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2755]
gi|404287912|ref|YP_006694498.1| translation factor, SUA5 type [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|405750886|ref|YP_006674352.1| translation factor, SUA5 type [Listeria monocytogenes ATCC 19117]
gi|405753749|ref|YP_006677214.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2378]
gi|405756653|ref|YP_006680117.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2540]
gi|406705276|ref|YP_006755630.1| translation factor, SUA5 type [Listeria monocytogenes L312]
gi|417316321|ref|ZP_12102971.1| translation initiation protein [Listeria monocytogenes J1816]
gi|417318526|ref|ZP_12105106.1| translation initiation protein [Listeria monocytogenes J1-220]
gi|424715353|ref|YP_007016068.1| Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Listeria monocytogenes serotype 4b str. LL195]
gi|424824291|ref|ZP_18249304.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
Scott A]
gi|46881985|gb|AAT05279.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
4b str. F2365]
gi|47017319|gb|EAL08149.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b
H7858]
gi|225877551|emb|CAS06265.1| Putative yeast translation initiation protein [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258607318|gb|EEW19926.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
R2-503]
gi|293583772|gb|EFF95804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262]
gi|293594579|gb|EFG02340.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
J1-194]
gi|300514259|gb|EFK41318.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017]
gi|328465145|gb|EGF36413.1| translation initiation protein [Listeria monocytogenes J1816]
gi|328471149|gb|EGF42053.1| translation initiation protein [Listeria monocytogenes J1-220]
gi|332312971|gb|EGJ26066.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
Scott A]
gi|384391984|gb|AFH81054.1| translation initiation protein [Listeria monocytogenes 07PF0776]
gi|404220086|emb|CBY71450.1| translation factor, SUA5 type [Listeria monocytogenes ATCC 19117]
gi|404222949|emb|CBY74312.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2378]
gi|404225853|emb|CBY77215.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2540]
gi|404228734|emb|CBY50139.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2755]
gi|404246841|emb|CBY05066.1| translation factor, SUA5 type [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|406362306|emb|CBY68579.1| translation factor, SUA5 type [Listeria monocytogenes L312]
gi|424014537|emb|CCO65077.1| Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Listeria monocytogenes serotype 4b str. LL195]
Length = 345
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN A+ +YE K R + PL + ++ + +
Sbjct: 21 AAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDPFV 80
Query: 100 DTHTV-SFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ V + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ +
Sbjct: 81 ASYPVKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIDAANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG + ST++D S + +
Sbjct: 141 PVAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGG--ATGVGLESTVIDCSLDIPVILR 198
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
GV ++I +I+ + NT
Sbjct: 199 PGGVTKEQIEQIIGPVDIATNNT 221
>gi|420162126|ref|ZP_14668886.1| SUA5 family translation factor [Weissella koreensis KCTC 3621]
gi|394744560|gb|EJF33502.1| SUA5 family translation factor [Weissella koreensis KCTC 3621]
Length = 343
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 10/195 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L+KG +V+ PT+T+YGL DA N KA++ +Y K R + PL + VS + +A
Sbjct: 14 AVKALQKGQLVSFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPLIVHVSRPETVQTYA 73
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+TI+ + L+ + + VA R+PD+ R L+ + SP
Sbjct: 74 QVDARAQKLMDTFWPGPLTIILPIQVGKLSALVTGGLQTVASRMPDNDLTRALIDQVGSP 133
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS N + L +++ V+D G + G ST++DLS +I
Sbjct: 134 LVGPSANTSGKPSPTIANHVYHDLHGKIAGVLDDGAT----KIGVESTVIDLSTPQA-AI 188
Query: 216 VRKG-VCYDKILKIL 229
+R G + ++I IL
Sbjct: 189 LRPGKITAEQIEAIL 203
>gi|229176001|ref|ZP_04303497.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3]
gi|228607494|gb|EEK64820.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3]
Length = 347
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|242399386|ref|YP_002994810.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739]
gi|242265779|gb|ACS90461.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739]
Length = 341
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K +AA+ +K+ +VA PT+T+YGL DA N A+ +++ K R + PL I ++
Sbjct: 12 DWKKIKVAARFIKESKLVAFPTETVYGLGADALNEDAVRKIFQAKGRPPDNPLIIHIANF 71
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
I + A + ++LA+ PGP+T+V + + + + VA+R+PDH+ L
Sbjct: 72 EQIYELAREVPETAKILAQRFWPGPLTLVLPKKDEVPYVTTGGLETVAIRMPDHEIALAL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ D P+A SAN S +PS TL + + ++ +IDGG + G ST+VDL+
Sbjct: 132 IQSSDRPIAAPSANISGKPSPTLAEHVVDDFYGKIECIIDGG----ETKIGVESTVVDLT 187
Query: 209 EENVYSIVRKGVCYDKILKILHKYHL 234
+ G+ ++I K++ K ++
Sbjct: 188 THPPMLLRPGGLPLEEIKKVIGKVNV 213
>gi|343500092|ref|ZP_08738008.1| putative translation factor [Vibrio tubiashii ATCC 19109]
gi|418478566|ref|ZP_13047666.1| translation factor [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342821296|gb|EGU56083.1| putative translation factor [Vibrio tubiashii ATCC 19109]
gi|384573808|gb|EIF04295.1| translation factor [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 319
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 5/191 (2%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+D K A L G +VA+PT+T+YGLA DA+N +A+ ++ K R N PL + +
Sbjct: 8 ASDSKDIEQAKDILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLIVHIG 67
Query: 91 EITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
E+ + +WA D ++ + PGPVT++ N+++ + + + +R+P H+
Sbjct: 68 EVEQLSEWAKDIPQEAYTIAKAYWPGPVTVLLNKADQATPVVTGGLDTIGIRMPAHEVFA 127
Query: 150 QLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
LLK +A SAN + S T + L +++ V+DGG ++ STI+DL+
Sbjct: 128 TLLKSSGMAVAAPSANPYKKLSPTSAEHVLNSLGGRIAAVLDGGNCAH--GLESTIIDLT 185
Query: 209 EENVYSIVRKG 219
++ + I+R G
Sbjct: 186 QKP-FRILRSG 195
>gi|448456871|ref|ZP_21595527.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lipolyticum DSM
21995]
gi|445811468|gb|EMA61475.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lipolyticum DSM
21995]
Length = 201
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
TD A A + + +G +V PT+T+YGL DA + A+ ++E+K R+ + PL++ V
Sbjct: 3 TDSDALRRAVEAIAEGDLVVYPTETVYGLGADALDPAAVERVFELKGRERSNPLSLGVPS 62
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ ++ + LPGPVT++ R + + L +V +R+PDH R L
Sbjct: 63 VDAALRYTRPTEFAVAFARAFLPGPVTVIVERGDAVPDALTAGRDRVGIRVPDHPIARDL 122
Query: 152 LKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
L+ PL TSAN S S ++ ++ ++ V+DGG E ST+VD
Sbjct: 123 LRET-GPLTATSANVSGRGSVTHPDDLDDRIREGVAAVVDGGETPGTE---STVVDPETR 178
Query: 211 NVYSIVRKGVCYDKI 225
++ R+G I
Sbjct: 179 TIH---RRGAMAGAI 190
>gi|49475221|ref|YP_033262.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1]
gi|49238026|emb|CAF27233.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1]
Length = 320
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN AI ++ K+R PL VS I ++
Sbjct: 14 AVALLEQGRLVALPTETVYGLAGDATNGNAIASIFLTKRRPKFNPLIAHVSSIFMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T V N+ + +AVR PD F +++K
Sbjct: 74 EIDFLSRHLMEVFWPGPLTFVLPLKAQHNIHPLTTSGLNTLAVRFPD-SFFAEVVKCFGR 132
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLS----VVIDGGIISNPERFG--STIVDLSEEN 211
PLA SAN+S L + +W+ L +++DGG + G STI+ +S+EN
Sbjct: 133 PLAAPSANQSGH---LSPTSAEAVWASLGESVPLILDGGF----SKIGLESTIIKVSDEN 185
Query: 212 VYSIVRKGVCYDKILKILHK 231
+Y + G+ + I ++ K
Sbjct: 186 IYLLRPGGIAAEDIEEVAGK 205
>gi|395766974|ref|ZP_10447512.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella doshiae NCTC 12862]
gi|395415586|gb|EJF82020.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella doshiae NCTC 12862]
Length = 320
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L++G +VALPT+T+YGLA DATN KA+ ++ KKR PL + VS + ++
Sbjct: 14 AIKLLEQGRLVALPTETVYGLAGDATNGKAVASIFYTKKRPQFNPLIVHVSGVDMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +++ L+ PGP+T V H ++ + +A+R P+ F ++++
Sbjct: 74 EIDSLTRRLMEVFWPGPLTFVLPLKAHHDIHPLTTSGLDTLAIRFPEGGFA-EVVEYFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S S T F L + +++DGG R G STI+ + ++N+Y
Sbjct: 133 PLAAPSANHSGRLSPTSAQAVFASLGDSVPLILDGG----SSRIGLESTIIKVCDKNIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I KI K
Sbjct: 189 LRPGGISAEEIEKITGK 205
>gi|451941616|ref|YP_007462253.1| translation factor, Sua5/YciO/YrdC family [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
gi|451901003|gb|AGF75465.1| translation factor, Sua5/YciO/YrdC family [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
Length = 320
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VALPT+T+YGLA DATN +A++ ++ KKR PL VS I +
Sbjct: 14 AVALLEQGRLVALPTETVYGLAGDATNGRAVSSIFSTKKRPQFNPLIAHVSGIEMAEHYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D +S L+ PGP+T V H ++ + +AVR PD F +++++
Sbjct: 74 DIDVLSRRLMEVFWPGPLTFVLPLKVHHDIHPLTTSGLNTLAVRFPDGCFA-EVVQIFGR 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN+S S T + L + +++DGG P + G STI+ + E +Y
Sbjct: 133 PLAAPSANQSGRLSPTSAEAVLESLGRSVPLILDGG----PSKIGLESTIIKVCGERLYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I KI K
Sbjct: 189 LRPGGLAAEEIEKITGK 205
>gi|73666905|ref|YP_302921.1| translation factor SUA5 [Ehrlichia canis str. Jake]
gi|72394046|gb|AAZ68323.1| translation factor SUA5 [Ehrlichia canis str. Jake]
Length = 198
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L A Q L ++A PT+T+Y LA DA + +AI +Y+IK R NKPL++ V I I +
Sbjct: 3 LKAIQALNNKHLIAFPTETVYALAGDAYSIEAIQKIYQIKGRSYNKPLSLLVGNINKIKQ 62
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+++ + +++ +L PGP+T V + L + +RIP+H +++ +++
Sbjct: 63 FSNLTDHAIKIIQKLSPGPITFVLPIHNYHKLPRQFFNNTIGIRIPNHPIALEIVNKIEN 122
Query: 158 PLALTSANESNEPSTLCINEFQK-LWSQLSVVI-DGGIISNPERFGSTIVDLSEENVYSI 215
P+ TS N S +PS ++ + + +SV I D +++ E ST++DL+ Y I
Sbjct: 123 PVVGTSINISGQPSVTAAHQIHETIKKHISVTIEDDSLVNGTE---STVIDLTS---YKI 176
Query: 216 VRKGVCYDKIL 226
+R G +K L
Sbjct: 177 LRAGAVAEKKL 187
>gi|89897678|ref|YP_521165.1| hypothetical protein DSY4932 [Desulfitobacterium hafniense Y51]
gi|89337126|dbj|BAE86721.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 348
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 110/184 (59%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +++G +VALPT+T+YGL +A ++ A ++++K R + PL + +S++ + +
Sbjct: 21 AAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLAMVKRLV 80
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T L A+ PGP+T+V ++ + ++ + VA+R+P H +L+K P
Sbjct: 81 EEWTPQAALCADKFWPGPLTLVLEKTAFVPDVVSGGLGTVAIRMPKHPVALELIKEAGVP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T I+ ++ L ++ +++DGG P G ST++DL++E V +I
Sbjct: 141 IAAPSANLSGKPSPTQGIHVWKDLKGKIPLILDGG----PCAVGVESTVLDLTDE-VPTI 195
Query: 216 VRKG 219
+R G
Sbjct: 196 LRPG 199
>gi|392970036|ref|ZP_10335445.1| putative Sua5 family translation factor [Staphylococcus equorum
subsp. equorum Mu2]
gi|403046015|ref|ZP_10901490.1| translation factor [Staphylococcus sp. OJ82]
gi|392511964|emb|CCI58652.1| putative Sua5 family translation factor [Staphylococcus equorum
subsp. equorum Mu2]
gi|402764177|gb|EJX18264.1| translation factor [Staphylococcus sp. OJ82]
Length = 347
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 103/182 (56%), Gaps = 12/182 (6%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
++G ++A+PT+T+YGL DA N++AI +YE K R + PL + + ++ I + TH
Sbjct: 28 FEQGGLIAIPTETVYGLGADARNAEAIKKIYEAKGRPSDNPLIVHIHDLKQIEHF--THD 85
Query: 104 VSFE---LLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++ E L+ PGP++ + + +L ++ ++ +AVR+P H RQ+L+ +D P+
Sbjct: 86 ITDEIKLLMKHFWPGPISFILPIKKGYLCESVSGGLSSIAVRMPSHSIGRQILQFVDIPI 145
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
A SAN S PS F+ ++S L+ I+G + + G ST++D + + + I R
Sbjct: 146 AAPSANLSGRPSPTT---FEHVYSDLNGRINGMVNGDQSEEGLESTVLDCT-QFPFRIAR 201
Query: 218 KG 219
G
Sbjct: 202 PG 203
>gi|170287882|ref|YP_001738120.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2]
gi|170175385|gb|ACB08437.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2]
Length = 335
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 25 MCSIVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M ++KV D K A + L+ G V+ PT+T+YG+ DA N +A ++E+K R
Sbjct: 1 MTRVLKVDPLFPDEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRP 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVA 139
+ PL + + + + A+ + + L + PGP+T++ +SE + + + VA
Sbjct: 61 ADNPLIVHIHSFEQLEEIAEGYEPHLDFLKKFWPGPLTVILRKKSEKIPPVVTAGLPTVA 120
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPE 198
+R+P H +L++L P+A SAN S PS + + ++ ++ID G P
Sbjct: 121 MRMPAHPVALKLIELFGHPIAAPSANISGRPSATNVKHVVEDFMGKVKLIIDAG--DTPF 178
Query: 199 RFGSTIVDLSEEN 211
STIVDL++E
Sbjct: 179 GLESTIVDLTKEK 191
>gi|423376879|ref|ZP_17354163.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG1O-2]
gi|423621634|ref|ZP_17597412.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD148]
gi|401262932|gb|EJR69066.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD148]
gi|401639973|gb|EJS57706.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG1O-2]
Length = 346
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 NEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATG--VGVESTVIDCTSE- 194
Query: 212 VYSIVRKG 219
+ +I+R G
Sbjct: 195 IPTILRPG 202
>gi|423439976|ref|ZP_17416882.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG4X2-1]
gi|423449864|ref|ZP_17426743.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG5O-1]
gi|423463047|ref|ZP_17439815.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6O-1]
gi|423532403|ref|ZP_17508821.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB2-9]
gi|423542329|ref|ZP_17518719.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB4-10]
gi|423548559|ref|ZP_17524917.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB5-5]
gi|401127553|gb|EJQ35272.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG5O-1]
gi|401168776|gb|EJQ76031.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB4-10]
gi|401174932|gb|EJQ82136.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB5-5]
gi|402421139|gb|EJV53404.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG4X2-1]
gi|402422378|gb|EJV54616.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6O-1]
gi|402464972|gb|EJV96659.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB2-9]
Length = 346
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 NEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATG--VGVESTVIDCTSE- 194
Query: 212 VYSIVRKG 219
+ +I+R G
Sbjct: 195 IPTILRPG 202
>gi|392531970|ref|ZP_10279107.1| putative ribosome maturation factor; RNA binding protein
[Carnobacterium maltaromaticum ATCC 35586]
Length = 340
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 11/211 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ ++ G +VA PT+T+YGL DA N +A+ +Y K R + PL + ++ ++
Sbjct: 14 AAKLIQAGELVAFPTETVYGLGADALNEEAVKKVYAAKGRPSDNPLIVHIASREELESLV 73
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ ++ L+ + PGP+T++F + + + + VA+R+PD+ +L++L +
Sbjct: 74 AEIPAIAEPLIKKFWPGPLTLIFKAKPGVFSTSVTAGLESVAIRMPDNSLTLKLIQLAER 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PL SAN S PS T + + L +++ +IDGG ST++DL+ I+
Sbjct: 134 PLVGPSANTSGRPSPTSAEHVYHDLEGKIAGIIDGGATGI--GLESTVLDLTSPENPLIL 191
Query: 217 RKGVCYDKILK------ILHKYHLVEKNTFP 241
R G + LK + + +HL+ K P
Sbjct: 192 RPGAITQQDLKEVLGKDVTYDHHLIGKEEAP 222
>gi|339625260|ref|ZP_08661049.1| translation factor SUA5 [Fructobacillus fructosus KCTC 3544]
Length = 341
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD 94
KA +AA+ L+ G VVA PT+T+YGL DATN +A+ ++ K R + PL + V I
Sbjct: 11 KAIEVAAKLLQSGEVVAFPTETVYGLGADATNDEAVKKVFVAKGRPSDNPLIMTVGAIEQ 70
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
+ + + + EL+ PG +TI+ ++ +++ + + AVR+P ++ RQ+++
Sbjct: 71 LQPYVELTAQAKELMTVFWPGSLTIILPIKTGMVSMLVTGGLETAAVRMPANQVTRQMIR 130
Query: 154 LMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
L P+ SAN S +PS T + + +++ ++D G P + G ST+VDL+ +
Sbjct: 131 LAGVPIVGPSANTSGKPSPTTAAHVKHDMAGKIAAIVDDG----PTQVGVESTVVDLTAK 186
Query: 211 NVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+I+R G L+ + K +++ +
Sbjct: 187 R-PTILRTGAVSQGDLEQVLKTEVIDATS 214
>gi|147790869|emb|CAN77236.1| hypothetical protein VITISV_024209 [Vitis vinifera]
Length = 750
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 19 IALPSKM-------CSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAIN 71
++ P KM +V+ A A + +K G V+A+PTDTLYG ACDA +S+A+N
Sbjct: 595 VSFPKKMEAVMGSELGVVRPATDAHAEEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVN 654
Query: 72 ILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRS 124
+YEIK R PLAICV ++ DI ++A T + LL LLPGPVT+V R
Sbjct: 655 RIYEIKGRKHTSPLAICVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRG 707
>gi|434396986|ref|YP_007130990.1| Sua5/YciO/YrdC/YwlC family protein [Stanieria cyanosphaera PCC
7437]
gi|428268083|gb|AFZ34024.1| Sua5/YciO/YrdC/YwlC family protein [Stanieria cyanosphaera PCC
7437]
Length = 217
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P++ A LKKG V+ PTDT+Y + CD A+ + +IK+ +KPL S ++
Sbjct: 14 PRSIEAIATALKKGAVMLYPTDTVYAIGCDLNAKSAVERVRKIKQMSNDKPLTFISSSLS 73
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLL 152
+I ++A ++ ++ L+PG T + ++ + L ++P +R+PDH+ + LL
Sbjct: 74 NISQYAWVSDRAYRIMKHLIPGAYTFLLPATKLVPKLVMSPKRKTTGIRVPDHQVCQDLL 133
Query: 153 KLMDSPLALTSA---NESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVD 206
K +D+P+ TSA N+ E T+ + + F L + +++D G+ P STI+D
Sbjct: 134 KALDNPIISTSAHLPNQEGEFPTIGVEKARLFDVLDKSVDLILDNGV--EPGFQLSTILD 191
Query: 207 LSEENVYSIVRKGVCYDK 224
L+ E I+RKG+ +++
Sbjct: 192 LTTEEPM-IIRKGLGWEE 208
>gi|73748639|ref|YP_307878.1| translation factor Sua5 [Dehalococcoides sp. CBDB1]
gi|289432664|ref|YP_003462537.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT]
gi|452203624|ref|YP_007483757.1| YrdC/Sua5 family protein [Dehalococcoides mccartyi DCMB5]
gi|73660355|emb|CAI82962.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1]
gi|288946384|gb|ADC74081.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT]
gi|452110683|gb|AGG06415.1| YrdC/Sua5 family protein [Dehalococcoides mccartyi DCMB5]
Length = 213
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 111/195 (56%), Gaps = 6/195 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A Q LK G VV PTDT+Y + A+N+ A+N +++IK R K L + +I+ I + A
Sbjct: 17 AVQVLKNGGVVIFPTDTVYAVGALASNTHAVNRVFDIKGRTNTKGLPALIGDISQIHQVA 76
Query: 100 DTH-TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L AE PG +T+V +++++ LEL VA+RIP+ + ++LK + P
Sbjct: 77 KIFPPLARKLAAEYWPGGLTLVLPKTDNIPLELTGGNETVAIRIPNQAAVIEMLKRVAEP 136
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S S+L +E + +L ++ ++DGG +S STIV ++ + + I+R
Sbjct: 137 VTGTSANLSGCKSSLNASEAKIQLGDRVDFILDGGQVSGGVE--STIVTVNNDEL-KIIR 193
Query: 218 KGVCYDK-ILKILHK 231
+G + I+K K
Sbjct: 194 QGAIKESDIMKTAGK 208
>gi|229076540|ref|ZP_04209500.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18]
gi|229099758|ref|ZP_04230683.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29]
gi|407707798|ref|YP_006831383.1| cytoplasmic protein [Bacillus thuringiensis MC28]
gi|228683647|gb|EEL37600.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29]
gi|228706573|gb|EEL58786.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18]
gi|407385483|gb|AFU15984.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis MC28]
Length = 342
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 20 AARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 79
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 80 NEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 133
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE- 190
Query: 212 VYSIVRKG 219
+ +I+R G
Sbjct: 191 IPTILRPG 198
>gi|229105918|ref|ZP_04236542.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28]
gi|228677492|gb|EEL31745.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28]
Length = 342
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 20 AARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 79
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 80 NEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 133
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE- 190
Query: 212 VYSIVRKG 219
+ +I+R G
Sbjct: 191 IPTILRPG 198
>gi|365162718|ref|ZP_09358842.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|423410925|ref|ZP_17388045.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG3O-2]
gi|423433290|ref|ZP_17410294.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG4O-1]
gi|363617446|gb|EHL68833.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|401109263|gb|EJQ17189.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG3O-2]
gi|401112341|gb|EJQ20220.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG4O-1]
Length = 346
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISQKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|302384783|ref|YP_003820605.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum
WM1]
gi|302195411|gb|ADL02982.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum
WM1]
Length = 353
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 11/199 (5%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+A LL A ++KG +VA PT+T+YGL +A N +A +Y K R + PL +
Sbjct: 13 NPEAELLIKPADIIRKGGLVAFPTETVYGLGGNALNEEAAGKIYAAKGRPSDNPLIAHIG 72
Query: 91 EITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
+ D+P +L+ PGP+T++F +S + + VAVR+P R
Sbjct: 73 DFDDLPPLVSAIPEAGKKLMKAFWPGPLTLIFPKSGLVPYGTTGGLDTVAVRMPVDPVAR 132
Query: 150 QLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVD 206
L++L P+A SAN S PS T + +Q + ++ +++DGG + G STI+D
Sbjct: 133 ALIRLAGVPVAAPSANTSGRPSPTTADHVWQDMNGKIDMIVDGGAVG----IGVESTIID 188
Query: 207 LSEENVYSIVRKGVCYDKI 225
+S + I+R G ++
Sbjct: 189 VSGDGPV-ILRPGAITQEM 206
>gi|387928391|ref|ZP_10131069.1| sua5/yciO/yrdC/ywlC family protein [Bacillus methanolicus PB1]
gi|387587977|gb|EIJ80299.1| sua5/yciO/yrdC/ywlC family protein [Bacillus methanolicus PB1]
Length = 352
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LKK V+A PT+T+YGL +A + +A+ ++E K R + PL I ++EI+ + ++A
Sbjct: 24 AADLLKKNEVIAFPTETVYGLGGNAESDEAVQKIFEAKGRPSDNPLIIHIAEISQLNRFA 83
Query: 100 DTHTVSFELLAELL-PGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ ++L E PGP+T+V N R L+ + ++ VAVR+PDH ++K
Sbjct: 84 KNIPENAKILMETFWPGPLTLVLNKRDGFLSEKATAGLSTVAVRMPDHPVALAVIKESGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + L +++ ++DGG P G ST++D +E
Sbjct: 144 PIAAPSANRSGKPSPTTAKHVADDLDGRIAGIVDGG----PTGVGVESTVLDCTEPVPVI 199
Query: 215 IVRKGVCYDKILKIL 229
+ G+ ++I K +
Sbjct: 200 LRPGGITKEQIEKAI 214
>gi|293399949|ref|ZP_06644095.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373453710|ref|ZP_09545597.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium sp. 3_1_31]
gi|291306349|gb|EFE47592.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371963001|gb|EHO80573.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium sp. 3_1_31]
Length = 203
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 5/188 (2%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A LK+G VVA PTDT+YGLA N A+ L + K R NKP+ VS + + A
Sbjct: 15 ADLLKEGKVVAFPTDTVYGLAVIYENEAALEALKKSKGRPENKPIPTMVSNFRQMEEIAY 74
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+ +L E +PG T++ + EHL L V +R+PD + L+ L + PL
Sbjct: 75 MSEDARKLAEEFMPGGFTMILKKKEHLPAYLTNGFDTVGIRMPDDDIILHLIDLCEKPLL 134
Query: 161 LTSANESN-EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
+TSAN S EP ++L ++ ++ G + STIVD+S + + IVR+G
Sbjct: 135 VTSANLSGEEPQETAEGVLKQLDGRIDAIVVG---ESGGSKASTIVDMSTDEL-RIVREG 190
Query: 220 VCYDKILK 227
+K ++
Sbjct: 191 PISEKRIR 198
>gi|229118821|ref|ZP_04248170.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3]
gi|228664622|gb|EEL20115.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3]
Length = 342
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 20 AARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 79
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 80 NEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 133
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE- 190
Query: 212 VYSIVRKG 219
+ +I+R G
Sbjct: 191 IPTILRPG 198
>gi|14521794|ref|NP_127270.1| sua5 related protein [Pyrococcus abyssi GE5]
gi|5459014|emb|CAB50500.1| Putative translation factor, SUA5 related protein [Pyrococcus
abyssi GE5]
gi|380742421|tpe|CCE71055.1| TPA: sua5 related protein [Pyrococcus abyssi GE5]
Length = 340
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA +++G +VA PT+T+YGL +A + A+ ++E K R + PL I ++ +
Sbjct: 18 IAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLEVL 77
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A E+LA+ PGP+T+V +SE + + + VAVR+P H+ +L++L +
Sbjct: 78 AKEIPEEAEMLAKRFWPGPLTLVLPKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSER 137
Query: 158 PLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
P+A SAN S +PS + + + ++ +IDGG R G ST++DL+E
Sbjct: 138 PIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGG----ETRIGVESTVIDLTE 188
>gi|423386814|ref|ZP_17364069.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG1X1-2]
gi|423526854|ref|ZP_17503299.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB1-1]
gi|401630666|gb|EJS48464.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG1X1-2]
gi|402454726|gb|EJV86516.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuB1-1]
Length = 346
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|30023356|ref|NP_834987.1| SUA5 protein [Bacillus cereus ATCC 14579]
gi|229112739|ref|ZP_04242272.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15]
gi|229130575|ref|ZP_04259531.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4]
gi|229147866|ref|ZP_04276207.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24]
gi|296505750|ref|YP_003667450.1| integral membrane protein [Bacillus thuringiensis BMB171]
gi|423644488|ref|ZP_17620105.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD166]
gi|423651167|ref|ZP_17626737.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD169]
gi|423658241|ref|ZP_17633540.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD200]
gi|29898917|gb|AAP12188.1| SUA5 protein [Bacillus cereus ATCC 14579]
gi|228635516|gb|EEK92005.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24]
gi|228652914|gb|EEL08796.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4]
gi|228670720|gb|EEL26031.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15]
gi|296326802|gb|ADH09730.1| integral membrane protein [Bacillus thuringiensis BMB171]
gi|401270612|gb|EJR76632.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD166]
gi|401279445|gb|EJR85371.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD169]
gi|401287971|gb|EJR93733.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD200]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|334342210|ref|YP_004547190.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum ruminis DSM
2154]
gi|334093564|gb|AEG61904.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum ruminis DSM
2154]
Length = 355
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 14/209 (6%)
Query: 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
K DP AA +++G +VA PT+T+YGL + N A+ +Y K R + PL + V
Sbjct: 14 KNPDPYIIGQAADIIRRGGLVAFPTETVYGLGANGLNGAAVAGIYRAKGRPSDNPLILHV 73
Query: 90 SEITDI----PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDH 145
++ P+ ++T + +L+A PGP+T+V + + E+ + VA+R+PDH
Sbjct: 74 ADKRMAEGICPQLSET---AKKLMALFWPGPLTLVVPKKAGIPEEVTGGLNTVAIRMPDH 130
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--S 202
L++ P+A SAN S PS T + Q L ++ ++D G P G S
Sbjct: 131 PVALALIRAAGVPVAAPSANRSGRPSPTTAAHVQQDLQGRIDAILDAG----PAGLGLES 186
Query: 203 TIVDLSEENVYSIVRKGVCYDKILKILHK 231
T++DL+ E + G+ ++++ + L K
Sbjct: 187 TVLDLTVETPVILRPGGITFEQLTEALGK 215
>gi|229050996|ref|ZP_04194545.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676]
gi|228722373|gb|EEL73769.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|229087815|ref|ZP_04219931.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44]
gi|228695490|gb|EEL48359.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44]
Length = 347
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 103/182 (56%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + + + +
Sbjct: 24 AARLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGARSQLGEIV 83
Query: 100 DTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T V+ EL+ PGP+TI+ + + ++ ++ + V VR+PDH L++ + P
Sbjct: 84 REITPVAEELMKHFWPGPLTIILPKKDGISEKVTAGLDTVGVRMPDHPVALALIEAANVP 143
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS TL + ++ L +++ ++DGG + ST+VD + E V +I+R
Sbjct: 144 VAAPSANRSGRPSPTLAHHVYEDLNEKIAGIVDGG--ATGVGVESTVVDCTSE-VPTILR 200
Query: 218 KG 219
G
Sbjct: 201 PG 202
>gi|229153489|ref|ZP_04281667.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550]
gi|228630093|gb|EEK86744.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|330506808|ref|YP_004383236.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP6]
gi|328927616|gb|AEB67418.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP6]
Length = 190
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ + G VV PT+T+YGL +A + +A+ ++ IKKR ++ P+++ VS + + + A
Sbjct: 5 AARFIIGGGVVVYPTETVYGLGANALDEQAVMRVFLIKKRPLSMPISLAVSSLEMLREVA 64
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD--S 157
+ ++L +LLPGPV+I+ + + L + V +R PDH+ L+++D
Sbjct: 65 EVRDDDMDILEDLLPGPVSILLRKKSIVPDILTAGSSLVGIRFPDHE---SALRIIDKAG 121
Query: 158 PLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIIS--NPERFGSTIVDLSEENVYS 214
P+ TSAN + +P+ + E K + ++ +V+DGG P ST++DL EN
Sbjct: 122 PITSTSANRTGQPAPVSAKEVSKEIEDRVELVVDGGRCKYCQP----STLLDL--EN-RK 174
Query: 215 IVRKGVCYDKILKILH 230
I+R G DK LK +
Sbjct: 175 IIRPGAGLDKALKAIK 190
>gi|150388176|ref|YP_001318225.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens
QYMF]
gi|149948038|gb|ABR46566.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens
QYMF]
Length = 356
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 27/218 (12%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD------ 94
+ +++G VA PT+T+YGL +A +SKAIN ++ K R + PL + V+ +
Sbjct: 25 GEMIREGKTVAFPTETVYGLGANALDSKAINKIFVAKGRPSDNPLIVHVAHRVEVDALVR 84
Query: 95 -IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
IP+ A +L+A PGP+T+V +S + E++ ++ VA+R+P H R L++
Sbjct: 85 VIPEKAK------KLMAHFWPGPLTLVMEKSHGIPGEISAGLSTVAIRMPVHPIARTLIE 138
Query: 154 LMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
P+A SAN S +PS T + Q L ++ +I GG P G ST++D++EE
Sbjct: 139 KAGVPVAAPSANTSGKPSPTRAAHVIQDLRGKVDAIIAGG----PCDVGVESTVLDVTEE 194
Query: 211 NVYSIVRKGVCYDKILKILHK-------YHLVEKNTFP 241
+ GV + + ++ + YH E P
Sbjct: 195 TPMILRPGGVTKEMLEAVIGEVALDPGLYHRGEMKDVP 232
>gi|423589147|ref|ZP_17565233.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD045]
gi|401224386|gb|EJR30940.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD045]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVGEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|355673497|ref|ZP_09058972.1| hypothetical protein HMPREF9469_02009 [Clostridium citroniae
WAL-17108]
gi|354814210|gb|EHE98810.1| hypothetical protein HMPREF9469_02009 [Clostridium citroniae
WAL-17108]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 13/194 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI---CVSEITDIP 96
AAQ L++G +VA PT+T+YGL +A + A +Y K R + PL C E+ +
Sbjct: 22 AAQVLREGGLVAFPTETVYGLGGNALDEDAAKKIYAAKGRPCDNPLIAHISCAEELEPLV 81
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + L+ PGP+T++F +S + + VAVR+PD +L+ L
Sbjct: 82 K--EIPEAGRRLMEAFWPGPLTMIFPKSSKVPYGTTGGLDTVAVRMPDDPIANRLIALAG 139
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
P+A SAN S PS T + +Q + ++ ++IDGG P G STIVD+S V
Sbjct: 140 VPIAAPSANTSGRPSPTTADHVWQDMNGRIEMIIDGG----PVGIGVESTIVDVSSP-VP 194
Query: 214 SIVRKGVCYDKILK 227
+++R G ++L+
Sbjct: 195 AVLRPGAITMEMLR 208
>gi|336121499|ref|YP_004576274.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis
IH1]
gi|334856020|gb|AEH06496.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis
IH1]
Length = 236
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 46 KGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS 105
+G ++ TDTLYGL + + A+ +Y++KKRD+NKP++I + + DI K+A + +S
Sbjct: 35 EGKIIICGTDTLYGLCANVLDENAVKKVYKLKKRDLNKPISIFLKDKEDIEKYAYVNEIS 94
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALT 162
+++ + LPG +TI+ + + + PN+ + +RIPD + +R+L + PL T
Sbjct: 95 KKIIDKFLPGALTIILKKKDTI-----PNIVSKDYIGIRIPDSEIIRELSIV---PLTAT 146
Query: 163 SANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
SAN S E + E +L + ++ID G+ + STI+ + +N+ I +
Sbjct: 147 SANLSGEKPPTSVKEISDELRKNVDLIIDTGVCK--YKTPSTIIKILNDNIELIREGAIP 204
Query: 222 YDKILKI 228
+DKI K+
Sbjct: 205 FDKIKKL 211
>gi|423394480|ref|ZP_17371681.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG2X1-1]
gi|423405352|ref|ZP_17382501.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG2X1-3]
gi|401658167|gb|EJS75666.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG2X1-1]
gi|401661254|gb|EJS78723.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG2X1-3]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+ +A PT+T+YGL +A N +AI ++E K R + PL + + T +
Sbjct: 24 AARLLKENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKTQLDGIV 83
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ + P
Sbjct: 84 KEIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLKTVGVRMPDHPVALALIEEANVP 143
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS TL + ++ L +++ ++DGG ST++D + + V +I+R
Sbjct: 144 VAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSK-VPTILR 200
Query: 218 KG 219
G
Sbjct: 201 PG 202
>gi|150401886|ref|YP_001325652.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus
Nankai-3]
gi|150014589|gb|ABR57040.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus
Nankai-3]
Length = 341
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 112/202 (55%), Gaps = 7/202 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA +K G +VA PT+T+YGL DA N A+ ++++K R ++ PL I V+ + K
Sbjct: 13 IAANAIKDGDLVAFPTETVYGLGADALNPDAVEKIFKVKGRPIDNPLIIHVNNLEMANKI 72
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + LL + PGP+TI+ + E + N+ VAVRIP++K +L++ ++P
Sbjct: 73 AHITENAKILLQKFSPGPLTIILKKKEVVPAITCANLDTVAVRIPNNKIALELIEKANTP 132
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S +PS I L +++ I+G E ST++DL+E+ I+R
Sbjct: 133 IAAPSANLSGKPSPTNIQHIIDDLGDKINYAIEGETTIGVE---STVLDLTEKK-PKILR 188
Query: 218 KG-VCYDKILKILHKYHLVEKN 238
G + Y+ + K++ L+E N
Sbjct: 189 YGSITYEDLKKVID-IELIEIN 209
>gi|375100934|ref|ZP_09747197.1| Sua5/YciO/YrdC/YwlC family protein [Saccharomonospora cyanea
NA-134]
gi|374661666|gb|EHR61544.1| Sua5/YciO/YrdC/YwlC family protein [Saccharomonospora cyanea
NA-134]
Length = 371
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA L+ G +VA PT+T+YGL DA N A+ ++ +K R PL + +S +P W
Sbjct: 19 AAGTLRAGGLVAFPTETVYGLGADAENVDAVERVFAVKGRPSTHPLIVHLSGARQLPDWV 78
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A+ + + PGPVT+V R + + + VA+R+PDH R LL
Sbjct: 79 AEVPDAARRVADRFWPGPVTLVLRRGRRVPRAVTGGLETVALRVPDHPVARALLTAFGGG 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S T + L + + V+DGG P G STIVDL+ +I
Sbjct: 139 VAAPSANRFGSVSPTAAAHVGDGLGADVDYVLDGG----PCAVGVESTIVDLT--GAPAI 192
Query: 216 VRKG 219
+R G
Sbjct: 193 LRPG 196
>gi|329921099|ref|ZP_08277622.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G]
gi|328935006|gb|EGG31495.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G]
Length = 331
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIPADAQ------KLIDHFWPGPLTLILFVKEGALPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 214
>gi|309803187|ref|ZP_07697284.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
11V1-d]
gi|309805675|ref|ZP_07699716.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
09V1-c]
gi|309806328|ref|ZP_07700341.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
03V1-b]
gi|309809899|ref|ZP_07703747.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN
2503V10-D]
gi|308164695|gb|EFO66945.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
11V1-d]
gi|308165035|gb|EFO67277.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
09V1-c]
gi|308167312|gb|EFO69478.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
03V1-b]
gi|308169687|gb|EFO71732.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN
2503V10-D]
Length = 331
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIPADAQ------KLIDHFWPGPLTLILFVKEGALPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 214
>gi|160937847|ref|ZP_02085206.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC
BAA-613]
gi|158439286|gb|EDP17039.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC
BAA-613]
Length = 412
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 13/193 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPL---AICVSEITDIP 96
AA L+ G +VA PT+T+YGL +A + A +Y K R + PL CV E+ +
Sbjct: 22 AASILRSGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHVSCVEEVAPLV 81
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + +L+ PGP+T++F +SE + + VA+R+PD +L+ L
Sbjct: 82 K--EIPEAGRKLMEAFWPGPLTMIFPKSEKVPYGTTGGLDTVAIRMPDDPVANRLIALAG 139
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
P+A SAN S PS T + +Q + ++ ++IDGG P G STIVD+S V
Sbjct: 140 VPVAAPSANTSGRPSPTTADHVWQDMNGRIEMIIDGG----PVGIGVESTIVDVS-SAVP 194
Query: 214 SIVRKGVCYDKIL 226
S++R G ++L
Sbjct: 195 SVLRPGAITMEML 207
>gi|14590350|ref|NP_142416.1| hypothetical protein PH0435 [Pyrococcus horikoshii OT3]
gi|3256838|dbj|BAA29521.1| 340aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 340
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 110/200 (55%), Gaps = 8/200 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ +++G +VA PT+T+YGL DA N +A+ ++E K R + PL + +++ + + +
Sbjct: 18 IAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPLILHIAKFSQVYEL 77
Query: 99 ADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A ++L E PGP+TIV R + + + VA+R+P ++ +L++L
Sbjct: 78 AREVPEEAKVLVERFWPGPLTIVLPRKDVVPDVTTGGLDTVAIRMPANEIALKLIELSGK 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + + ++ +IDGG R G ST++DL+E
Sbjct: 138 PIAAPSANISGKPSPTSAEHVADDFYGKIECIIDGG----ETRIGVESTVIDLTEHPPVL 193
Query: 215 IVRKGVCYDKILKILHKYHL 234
+ G+ ++I K++ K +
Sbjct: 194 LRPGGLPLEEIEKVIGKVRI 213
>gi|91202678|emb|CAJ72317.1| similar to YrdC protein [Candidatus Kuenenia stuttgartiensis]
Length = 210
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 15/197 (7%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AA+ L+ G +VA PT+T+YGL N +AI LYE KKR K L + +++I ++ +
Sbjct: 26 IAAKALRNGGIVAFPTETVYGLGVHKDNPEAIERLYEAKKRPAEKRLTLMIADIGEVELY 85
Query: 99 ADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A V+ L+ PGP+ I+F + + + VR+PD+ R L++ +
Sbjct: 86 AGAVSDVAKRLMESFWPGPLAIIFPLKDG---------SDICVRLPDNAIARDLIRTANI 136
Query: 158 PLALTSANESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A TSAN S P + ++ + ++ ++DGG P ST+V + ++ V +V
Sbjct: 137 PVATTSANTSGHPPSTDASQVTAYFKDEIDFILDGG--PTPSHEPSTVVKI-KDGVCEVV 193
Query: 217 RKGVCYDKILK-ILHKY 232
R G+ + ++ L KY
Sbjct: 194 RHGIIPETTIRNCLKKY 210
>gi|424672250|ref|ZP_18109231.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis 599]
gi|402357295|gb|EJU92009.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis 599]
Length = 340
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVSSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAKHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKIL-----KILHKYHLVEKNTFP 241
+ L ++ HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|329766034|ref|ZP_08257595.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137489|gb|EGG41764.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 25 MCSIVKVTDPKAALLAA--QC---LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKR 79
M + V + +PK + QC L+KG +VA PT+T+YGL D N KAI +++ K R
Sbjct: 1 MKTRVIIVNPKKPQIKKIDQCVSILRKGGLVAFPTETVYGLGADGLNPKAIKKIFQAKNR 60
Query: 80 DVNKPLAICVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
+ PL +S D+ K+ D + +L+ + PGP+T++ +S + + +
Sbjct: 61 PSDNPLIFHISNKKDVKKYTKDIPATAEKLIEKFWPGPLTLILKKSSIIPKIATGGLNTI 120
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDG--GIIS 195
A+R+P HK L+ + +P+ SAN +PS TL + L ++ VIDG +I
Sbjct: 121 AIRMPSHKIALSLINSLGNPIVAPSANLFGKPSPTLAKHVLYDLDGKIDAVIDGRNSVIG 180
Query: 196 NPERFGSTIVDLSEENVYSIVRKG-VCYDKILKILH--KYH 233
STI+DL+ + +I+R G + Y+++ +L KYH
Sbjct: 181 ----IESTILDLTTK-TPTILRPGKISYEELKNLLKKVKYH 216
>gi|225028193|ref|ZP_03717385.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353]
gi|224954505|gb|EEG35714.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium hallii DSM 3353]
Length = 353
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 123/220 (55%), Gaps = 9/220 (4%)
Query: 21 LPSKMCSIVKVT-DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIK 77
+ +++ +I KV+ + KAA L A + +++G +VA PT+T+YGL DA N++A +Y K
Sbjct: 1 METELLNIEKVSPEEKAAALKKAGEIIREGGLVAFPTETVYGLGADALNAEASAKIYAAK 60
Query: 78 KRDVNKPLAICVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
R + PL + + ++ + + A + + +++ + PGP+T++ N+ + +
Sbjct: 61 GRPSDNPLIVHIHDVDQVYEIASEVPEAAKKVMEKFWPGPLTVILNKKSCVPDGTTGGLK 120
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIIS 195
VA+R+P H R ++ +A SAN S PS TL + ++ + ++ +++DGG +
Sbjct: 121 TVAIRMPSHPLARDFIRESGRMIAAPSANTSGRPSPTLASHVYEDMQGRIPLILDGGAVG 180
Query: 196 NPERFGSTIVDLSEENVYSIVRKG-VCYDKILKILHKYHL 234
STI+D+S + +I+R G + D + ++L K ++
Sbjct: 181 I--GIESTIIDMSTDTP-TILRPGYITKDMLEEVLPKVNI 217
>gi|315649887|ref|ZP_07902969.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453]
gi|315274686|gb|EFU38068.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453]
Length = 385
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 9/185 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L +G VA PT+T+YGL DA N++A+ ++ K R + PL + +SE+ +
Sbjct: 50 AGLVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPADNPLIVHISELAQLEGLV 109
Query: 100 D-THTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ L+ PGP+++V + + ++ + + VAVR+PDH L+
Sbjct: 110 QHVNETERALMDSFWPGPLSLVLPVKRDAVSPRVTAGLDTVAVRMPDHSVALALISAAGR 169
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S PS TL + L + V+DGG P G ST+V + E+ +
Sbjct: 170 PLAAPSANRSGRPSPTLASHVLADLAGYIDGVLDGG----PAGVGVESTVVQVGEDGAVT 225
Query: 215 IVRKG 219
++R G
Sbjct: 226 VLRPG 230
>gi|399517410|ref|ZP_10758961.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Leuconostoc
pseudomesenteroides 4882]
gi|398647689|emb|CCJ66988.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Leuconostoc
pseudomesenteroides 4882]
Length = 337
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 7/218 (3%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M + + TD ++ A+ L++G VVA PT+T+YGL DATN A+ ++ K R + P
Sbjct: 1 MKTTIFKTDKQSLAEASALLQQGEVVAFPTETVYGLGADATNEAAVQKVFTAKGRPSDNP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIP 143
L + V++ + + ++ + L+A PG +TI+ + + + + + VA R+P
Sbjct: 61 LIMTVADESQLDEFVVISEAAKTLMAAFWPGSLTIILPIKPGRVEMIVTGGLQTVAFRLP 120
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG-- 201
D+ RQL+++ P+ SAN S +PS Q +W + I G + P G
Sbjct: 121 DNDAARQLIRVAGVPIVGPSANISGKPSPTTA---QHVWHDMQGKIAGIVDDGPTTVGVE 177
Query: 202 STIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
ST++D+S +I+R G + L+ + +V+ +
Sbjct: 178 STVIDMS-ATTPTILRPGAVTQQQLEAVLGVRVVDATS 214
>gi|206970259|ref|ZP_03231212.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134]
gi|228924061|ref|ZP_04087337.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229072792|ref|ZP_04205991.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185]
gi|229082540|ref|ZP_04215003.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2]
gi|229181573|ref|ZP_04308899.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W]
gi|229193577|ref|ZP_04320521.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876]
gi|423427416|ref|ZP_17404447.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG3X2-2]
gi|423506791|ref|ZP_17483380.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HD73]
gi|449092389|ref|YP_007424830.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|206734836|gb|EDZ52005.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134]
gi|228589882|gb|EEK47757.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876]
gi|228601941|gb|EEK59436.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W]
gi|228700972|gb|EEL53495.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2]
gi|228710283|gb|EEL62258.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185]
gi|228835551|gb|EEM80916.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401108755|gb|EJQ16685.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG3X2-2]
gi|402446289|gb|EJV78151.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HD73]
gi|449026146|gb|AGE81309.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|423583497|ref|ZP_17559608.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD014]
gi|401209557|gb|EJR16316.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD014]
Length = 346
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|319942512|ref|ZP_08016822.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis
3_1_45B]
gi|319803915|gb|EFW00833.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis
3_1_45B]
Length = 348
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 16/216 (7%)
Query: 23 SKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
++ + VK D A AA L+ G +VA+PT+T+YGLA DA A+ Y K R +N
Sbjct: 6 TQSAAPVKPVDMAAIARAATILEAGGLVAMPTETVYGLAADADQEAAVTATYRAKGRPLN 65
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
PL + V+ DIP WA+ + +L PGP+T+V + + VA+R
Sbjct: 66 HPLIVHVASADDIPWWAEITPEAQKLADRYWPGPLTMVLKKKPRCGGWVTGGQDTVALRC 125
Query: 143 PDHKFLRQLLKLMDSP----LALTSANESNE--PSTLC-INE--FQKLWSQLSVVIDGGI 193
P H + LL P L SAN PST + E +K +L +++DGG
Sbjct: 126 PSHPWAHALLAAYGGPKHRGLTAPSANSFGRISPSTAQHVREDLGEKPAGKLDLILDGG- 184
Query: 194 ISNPERFG--STIVDLSEENVYSIVRKGVCYDKILK 227
P FG ST+++LS + I+R GV +L+
Sbjct: 185 ---PCEFGIESTMINLSGSHP-EILRHGVITRAMLE 216
>gi|256961205|ref|ZP_05565376.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96]
gi|293384154|ref|ZP_06630048.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712]
gi|293386968|ref|ZP_06631537.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613]
gi|312907895|ref|ZP_07766878.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
512]
gi|312978576|ref|ZP_07790314.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
516]
gi|422732210|ref|ZP_16788550.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0645]
gi|256951701|gb|EEU68333.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96]
gi|291078634|gb|EFE15998.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712]
gi|291083638|gb|EFE20601.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613]
gi|310625986|gb|EFQ09269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
512]
gi|311288725|gb|EFQ67281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
516]
gi|315161812|gb|EFU05829.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0645]
Length = 340
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKG- 219
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 220 VCYDKILKILHKY----HLVEKNTFP 241
+ +++ I+ + HL+ +N P
Sbjct: 197 ITKEQLESIISQVKIDTHLISENAAP 222
>gi|83312811|ref|YP_423075.1| putative translation factor [Magnetospirillum magneticum AMB-1]
gi|82947652|dbj|BAE52516.1| Putative translation factor [Magnetospirillum magneticum AMB-1]
Length = 368
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 104/201 (51%), Gaps = 19/201 (9%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD----IP 96
+ L +G +VA PT+T+YGL DAT+ A+ +++ K R PL VS + +
Sbjct: 66 GRVLAEGGLVAFPTETVYGLGGDATSDAAVAAIFKAKGRPSFNPLIAHVSSLEQAAALVE 125
Query: 97 KWADTHTVSFELLAELL-PGPVTIVFNR--SEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
AD H LLAE PGP+T+V R ++L + + VAVR+PDH L+K
Sbjct: 126 LGADAH-----LLAERFWPGPLTLVLRRRADSPVSLLASAGLDSVAVRMPDHPVALALIK 180
Query: 154 LMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
PLA SAN S S T + Q L ++++V+DGG P R G ST++DLSEE
Sbjct: 181 AAGRPLAAPSANRSGRVSPTRAEHVAQCLEGRIAMVLDGG----PCRVGVESTVLDLSEE 236
Query: 211 NVYSIVRKGVCYDKILKILHK 231
+ G+ D++ L +
Sbjct: 237 PPTLLRPGGITADELEAALGR 257
>gi|448472091|ref|ZP_21601046.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum aidingense JCM
13560]
gi|445820284|gb|EMA70111.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum aidingense JCM
13560]
Length = 212
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G +V PT+T+YGL DA + A+ ++E+K+RD PL++ V+ + +
Sbjct: 24 AAAAVADGDLVVYPTETVYGLGGDALDPAAVERVFELKQRDRGDPLSLGVASVDAALRHT 83
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ LPGPVT++ R + L +V +R+PDH R LL+ PL
Sbjct: 84 RPSEFALAFARAFLPGPVTVIVERGADVPDALTAGSDRVGIRVPDHPVARTLLRET-GPL 142
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S I + ++ ++ ++DGG E ST+VD ++ R+
Sbjct: 143 TATSANVSGSGSVTRIADLDARIRDGVAAIVDGGETPGTE---STVVDPEAGTIH---RR 196
Query: 219 GVCYDKI 225
G I
Sbjct: 197 GAMAGAI 203
>gi|295113544|emb|CBL32181.1| translation factor SUA5 [Enterococcus sp. 7L76]
Length = 340
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKG- 219
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 220 VCYDKILKILHKY----HLVEKNTFP 241
+ +++ I+ + HL+ +N P
Sbjct: 197 ITKEQLESIISQVKIDTHLISENAAP 222
>gi|228955573|ref|ZP_04117575.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228804101|gb|EEM50718.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 342
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 20 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 79
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 80 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 137
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 138 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCT-SAVPTI 194
Query: 216 VRKG 219
+R G
Sbjct: 195 LRPG 198
>gi|393796496|ref|ZP_10379860.1| putative translation factor [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 346
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 42 QC---LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
QC L+KG +VA PT+T+YGL D N KAI +++ K R + PL +S D+ K+
Sbjct: 20 QCVSILRKGGLVAFPTETVYGLGADGLNPKAIKKIFQAKNRPSDNPLIFHISNKKDVKKY 79
Query: 99 A-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D + +L+ + PGP+T++ +S + + +A+R+P HK L+ + +
Sbjct: 80 TKDIPATAEKLIEKFWPGPLTLILKKSSIIPKIATGGLNTIAIRMPSHKIALSLINSLGN 139
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDG--GIISNPERFGSTIVDLSEENVYS 214
P+ SAN +PS TL + L ++ VIDG +I STI+DL+ + +
Sbjct: 140 PIVAPSANLFGKPSPTLAKHVLSDLDGKIDAVIDGRNSVIG----IESTILDLTTK-TPT 194
Query: 215 IVRKG-VCYDKILKILH--KYH 233
I+R G + Y+++ +L KYH
Sbjct: 195 ILRPGKISYEELKNLLKKVKYH 216
>gi|374854869|dbj|BAL57740.1| hypothetical conserved protein [uncultured candidate division OP1
bacterium]
gi|374856214|dbj|BAL59068.1| translation factor [uncultured candidate division OP1 bacterium]
Length = 346
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 16/204 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITD----- 94
AA ++ G +VA PT+T+YGL DA N A+ ++ K+R + PL + ++ +
Sbjct: 16 AAHVIRAGGLVAFPTETVYGLGADALNPDAVRKIFIAKERPSDDPLIVHIASVEQLSLLV 75
Query: 95 --IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
IP A T T F PGP+T+V ++E + + VAVR P H R L+
Sbjct: 76 RYIPPKAHTLTERF------WPGPLTLVLPKAERVPAVTTGGLDTVAVRAPAHPVARALI 129
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ P+A SAN PS T + ++ L ++ +++DGG P ST++DL++E
Sbjct: 130 ERSGCPIAAPSANRFGRPSPTTASHVWEDLHGRIDLILDGG--PTPIGVESTVLDLTQEP 187
Query: 212 VYSIVRKGVCYDKILKILHKYHLV 235
+ GV +++ +IL + ++
Sbjct: 188 PMILRPGGVTLEELQEILGEVRVL 211
>gi|349611644|ref|ZP_08890877.1| hypothetical protein HMPREF1027_00304 [Lactobacillus sp. 7_1_47FAA]
gi|348608491|gb|EGY58473.1| hypothetical protein HMPREF1027_00304 [Lactobacillus sp. 7_1_47FAA]
Length = 338
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 21 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 80
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 81 TEIPADAQ------KLIDHFWPGPLTLILFVKEGALPDAVTGGLPTAAFRCPQDPLTNEL 134
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 135 IQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 190
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 191 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 221
>gi|407776160|ref|ZP_11123449.1| translation factor SUA5 [Thalassospira profundimaris WP0211]
gi|407280876|gb|EKF06443.1| translation factor SUA5 [Thalassospira profundimaris WP0211]
Length = 331
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G +VA PT+T+YGL DATN+ A+ +Y KKR PL + K A
Sbjct: 18 AAAKLRAGELVAFPTETVYGLGADATNADAVAGIYAAKKRPSFNPLISHFPDRDAAAKHA 77
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNL--ELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +L A PG +T+V R ++ + + +AVR+P H R+LL+ +
Sbjct: 78 VFDARADKLAAAFWPGALTLVLPRQADSDVCDLVTAGLPSIAVRVPAHPMARELLRAVGR 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S + S T + Q L + + +++DGG P G ST++DL+ + V
Sbjct: 138 PVAAPSANRSGKISPTTAAHVAQSLGNAIGMILDGG----PCGVGLESTVIDLTTDRVVM 193
Query: 215 IVRKGVCYDKILKIL 229
+ GV D++ ++L
Sbjct: 194 LRPGGVTADQVSELL 208
>gi|312871613|ref|ZP_07731705.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
3008A-a]
gi|311092838|gb|EFQ51190.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
3008A-a]
Length = 338
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 21 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 80
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 81 TEIPADAQ------KLIDHFWPGPLTLILFVKEGTLPDAVTGGLPTAAFRCPQDPLTNEL 134
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 135 IQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 190
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 191 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 221
>gi|167038769|ref|YP_001661754.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514]
gi|300913646|ref|ZP_07130963.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561]
gi|307723339|ref|YP_003903090.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513]
gi|166853009|gb|ABY91418.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514]
gi|300890331|gb|EFK85476.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561]
gi|307580400|gb|ADN53799.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513]
Length = 354
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 120/215 (55%), Gaps = 21/215 (9%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M IV+V +P+ L+ AA+ +K+G +VA PT+T+YG+ ++ N +AI ++ K R
Sbjct: 1 MTKIVRVNKNNPEIELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRP 60
Query: 81 VNKPLAICVSE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNP 133
+ PL + ++E + ++P+ A T L+ + PGP+T++F +S+ +
Sbjct: 61 QDNPLIVHIAELEQIYDLVKEVPQKAKT------LMKKFWPGPLTLIFKKSQKVPYVNTA 114
Query: 134 NVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ VA+R+P + L+K + P++ SAN S +PS T + + L+ ++ V+IDGG
Sbjct: 115 GMDTVAIRMPSNTIAHLLIKRAEVPISAPSANVSGKPSPTDASHVIEDLYGKVDVIIDGG 174
Query: 193 IISNPERFGSTIVDLSEENVYSIVRKGVCYDKILK 227
ST++DL+E+ V I+R G ++LK
Sbjct: 175 KCDV--GVESTVLDLTEK-VPVILRPGAVTLEMLK 206
>gi|423613465|ref|ZP_17589325.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD107]
gi|401241755|gb|EJR48135.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD107]
Length = 346
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ LK+ VA PT+T+YGL +A + +AI ++E K R + PL + + +
Sbjct: 24 AARLLKENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+T L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 REIPPVAET------LMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D +
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCT-ST 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|330834140|ref|YP_004408868.1| translation factor SUA5 [Metallosphaera cuprina Ar-4]
gi|329566279|gb|AEB94384.1| translation factor SUA5 [Metallosphaera cuprina Ar-4]
Length = 350
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +VA PT+T+YGL +A + KA +++ K+R ++ PL + ++++ + + A
Sbjct: 19 AAEVIRSGGLVAFPTETVYGLGANAFDGKAAEKVFKAKRRPMDNPLIVHIADVGQLEEVA 78
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +L ++ PGP+T V ++ + LE + VAVR+P H L++ P
Sbjct: 79 SDLSPEVMDLAQKVWPGPLTFVLKKTSKVPLETTGGLNTVAVRMPAHPIALSLIRESGVP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN + +PS TL + Q L + +VIDGG FG STI++L+
Sbjct: 139 IAAPSANLATKPSPTLAEHVIQDLDGSVDIVIDGG----ESFFGVESTIINLT 187
>gi|423076032|ref|ZP_17064746.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
DP7]
gi|361852849|gb|EHL05047.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
DP7]
Length = 351
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +++G +VALPT+T+YGL +A ++ A ++++K R + PL + +S++ + +
Sbjct: 24 AAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLAMVKRLV 83
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T L A+ PGP+T+V ++ + ++ + VA+R+P H +L+K P
Sbjct: 84 EEWTPQAALCADKFWPGPLTLVLEKTAFVPDVVSGGLGTVAIRMPQHPVALELIKEAGVP 143
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T I+ ++ L ++ +++DGG P G ST++DL+ E V +I
Sbjct: 144 IAAPSANLSGKPSPTRGIHVWKDLKGKIPLILDGG----PCAVGVESTVLDLTGE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|406916491|gb|EKD55503.1| hypothetical protein ACD_60C00004G0013 [uncultured bacterium]
Length = 310
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +VA PT+T+YGL DA+N A+ ++ KKR ++ PL + +++I +P WA
Sbjct: 8 AVSILKAGGLVAFPTETVYGLGGDASNESALKKIFLAKKRPMDHPLIVHIADIMQLPLWA 67
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LLA + PGP+T++ ++ H++ + + + +RIP H +LL
Sbjct: 68 RDISPHALLLANVFWPGPLTLILKKAPHVSDLITGSQDTIGIRIPKHPIAEELLHAFGGG 127
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
LA SAN+ S + ++L +++++DGG P G STIVD+S
Sbjct: 128 LAAPSANQFGRISPTTADAVHEELGDAVNLILDGG----PCEIGLESTIVDMS 176
>gi|196019468|ref|XP_002118987.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens]
gi|190577439|gb|EDV18528.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens]
Length = 185
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL 109
+ +PTDT+Y L+CDATN +AI +Y+IK+R ++K L + +S I +A+ + L
Sbjct: 1 ICIPTDTIYALSCDATNIEAIQKIYKIKQRALDKTLPMFMSNIKMARLYANFYKKELNLA 60
Query: 110 AELLPGPVTIVFN-RSEHLNL-ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
+ PG +T+V ++ H NL L N KVA+R+P +K ++ + + ++ P+ TSAN S
Sbjct: 61 DKFWPGALTLVSRIKNTHKNLPNLLKNNQKVAIRVPKNKLIQSVCQSINKPIIATSANIS 120
Query: 168 NEPSTLCINE-FQKLWSQLSVVI-DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKI 225
N+ + ++E ++ ++++++I D +S+ STI++ + Y I+RKGV K
Sbjct: 121 NQKNINSLDEIIKEFENKVNLIIKDNRELSDNCLTASTIIEFTNNEKYRILRKGVISKKE 180
Query: 226 L 226
L
Sbjct: 181 L 181
>gi|288559761|ref|YP_003423247.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
ruminantium M1]
gi|288542471|gb|ADC46355.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
ruminantium M1]
Length = 221
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 115/200 (57%), Gaps = 7/200 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +G V+ PTDT+YGL + N++A+ +Y+IK R+ +KPL++ VS+I + A
Sbjct: 19 AIDIMAQGGVILYPTDTVYGLGANIFNNQAVQRIYKIKHRERSKPLSVLVSDIESLELIA 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
S E++ + LPGP T + N+ + ++ ++ + TKV VRIPD+K R+L + P+
Sbjct: 79 HLDDHSREVVNKWLPGPFTFILNKQKTVSPYVSSS-TKVGVRIPDNKIARELASIF--PI 135
Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN +NE + ++ +++ + + ID G ++ + ST++DL+ S+VRK
Sbjct: 136 TTTSANIANEETLSNPHDILKQIGDCIDLAIDVGDLTGGKP--STVIDLTSAK-PSLVRK 192
Query: 219 GVCYDKILKILHKYHLVEKN 238
G+ + + I ++ N
Sbjct: 193 GLISNDLESIKEDIGDMDSN 212
>gi|442805979|ref|YP_007374128.1| tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Clostridium stercorarium subsp. stercorarium DSM 8532]
gi|442741829|gb|AGC69518.1| tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Clostridium stercorarium subsp. stercorarium DSM 8532]
Length = 349
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 110/200 (55%), Gaps = 10/200 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI--PK 97
AA L++G +VA PT+T+YGL +A +S+A+ +Y K R + PL + +++ D+ P
Sbjct: 19 AAMALREGKLVAFPTETVYGLGANALDSEAVRSIYIAKGRPSDNPLIVHIAD-RDMLEPL 77
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + +L++ PGP+TI+ +++ + + VA+R+PD+ +L++
Sbjct: 78 VTEISPNALKLMSAYWPGPLTIILKKTDIVPDVTTGGLNTVAIRMPDNDIALELIRKAGV 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T+ + + L ++S +IDGG P R G ST+VD++ E
Sbjct: 138 PVAAPSANRSGRPSPTMAKHVLEDLDGRISYIIDGG----PCRVGVESTVVDMTSEPAVI 193
Query: 215 IVRKGVCYDKILKILHKYHL 234
+ G+ I +++ + L
Sbjct: 194 LRPGGITPRMIEQVIGRVEL 213
>gi|350565581|ref|ZP_08934333.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus indolicus ATCC
29427]
gi|348663639|gb|EGY80200.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus indolicus ATCC
29427]
Length = 356
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +V PT+T+YGL D N +A+ +Y+ K R + PL + ++E + + + +
Sbjct: 35 GGLVVFPTETVYGLGADGLNPEALKRVYKAKNRPGDNPLILHIAETSQLEGIVENISEDA 94
Query: 107 ELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+ + E+ PGP+T++ NR++ + E + VAVR+P+H+ R +L + P+A SAN
Sbjct: 95 KNMMEMFWPGPLTLIMNRTKDVPNEATAGLETVAVRMPEHEIARDILSYCNKPIAAPSAN 154
Query: 166 ESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
S +PST F+ L ++ +++DGG S ST+VD +
Sbjct: 155 LSGKPSTTSFERVFEDLNGKVEIIVDGGKAS--VGIESTVVDTT 196
>gi|455652322|gb|EMF30965.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces gancidicus BKS
13-15]
Length = 312
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G +VALPT+T+YGL +A + A++ ++++K R + PL + + + + W +
Sbjct: 2 LRAGGLVALPTETVYGLGANAEDPAAVSRIFQVKGRPPSHPLIVHIGDAAHLDGWVEDVP 61
Query: 104 VSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
+ LLAE PGP+T+V R + LE + VAVR+PDH LL +
Sbjct: 62 PAARLLAERFWPGPLTLVLRRGHRVPLEATGGLETVAVRVPDHPVALALLSAFGGGVTAP 121
Query: 163 SANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
SAN S + + +L + + V+DGG P G STIVD + E + SI+R G
Sbjct: 122 SANRFGSVSPTTADHVRAELGAAVDFVLDGG----PCEVGVESTIVDATGE-IPSILRPG 176
>gi|444916598|ref|ZP_21236711.1| YrdC/Sua5 family protein [Cystobacter fuscus DSM 2262]
gi|444711883|gb|ELW52816.1| YrdC/Sua5 family protein [Cystobacter fuscus DSM 2262]
Length = 313
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 17/207 (8%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L++G V+ALPT+T+YGLA +A + A+ ++ IK R PL + V+E + WA
Sbjct: 2 ELLRRGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPATHPLIVHVAEAQALSSWARH 61
Query: 102 HTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
LAE PGP+T+V RS + VA+R+P H R +L+ + +A
Sbjct: 62 VPEDAWRLAEAFWPGPLTLVLPRSPRATDAVTGGQDTVALRVPHHPLARAVLQALGGGVA 121
Query: 161 LTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
SAN S + L + + +V+DGG P G STIVDLS+ +
Sbjct: 122 APSANRFGRVSPTTAEHVRADLGADVDLVLDGG----PCTVGVESTIVDLSQGEPAVLRP 177
Query: 218 KGVCYDKILKILHKYHLVEKNTFPIPV 244
G+ ++I ++L + P+PV
Sbjct: 178 GGLAVEEISRVLGR---------PVPV 195
>gi|152977511|ref|YP_001377028.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cytotoxicus NVH
391-98]
gi|152026263|gb|ABS24033.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cytotoxicus NVH
391-98]
Length = 347
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 107/184 (58%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + S++TDI
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMNDEAIVKIFEAKGRPSDNPLIVHIGSKSQLTDIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + V+ L+ PGP+TI+ + + ++ ++ + V VR+PDH+ L++ +
Sbjct: 84 R--EVPPVAEVLMKHFWPGPLTIILPKKDGISEKVTAGLDTVGVRMPDHEVALALIEAAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSK-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|169351563|ref|ZP_02868501.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552]
gi|169291785|gb|EDS73918.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium spiroforme DSM
1552]
Length = 200
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ + VVA PT+T++GL + +A+N LYE+K RD +K +++ ++ DI K+A
Sbjct: 15 AKLVSDNQVVAFPTETVFGLGIKFGSYEALNSLYELKHRDRHKAISMMINNPKDIEKYAY 74
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+ + +++ +PG VTI+ + E ++ ++ + +RIPD KF+ LL+ P+
Sbjct: 75 VNDQARKIIKSFMPGMVTIILKKREFIDDYFTASLDTIGIRIPDDKFVLSLLE-KTGPML 133
Query: 161 LTSANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
+TSAN S E + + K++S ++ +++ G +S STI+DLS+ V I+R G
Sbjct: 134 VTSANLSGEDTLVDDKAVMKVFSGKIPLIVKGESVSKK---ASTIIDLSKGKV-EILRVG 189
Query: 220 -VCYDKILKIL 229
+ +IL+++
Sbjct: 190 DISEKQILEVI 200
>gi|147669398|ref|YP_001214216.1| translation factor SUA5 [Dehalococcoides sp. BAV1]
gi|146270346|gb|ABQ17338.1| translation factor SUA5 [Dehalococcoides sp. BAV1]
Length = 213
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 6/195 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A Q LK G VV PTDT+Y + A N+ A+N +++IK R K L + +I+ I + A
Sbjct: 17 AVQVLKNGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDISQIHQVA 76
Query: 100 DTH-TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L AE PG +T+V +++++ LEL VA+RIP+ + ++LK + P
Sbjct: 77 KIFPLLARKLAAEYWPGGLTLVLPKTDNIPLELTGGNETVAIRIPNQAAVIEMLKRVAEP 136
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S S+L +E + +L ++ ++DGG +S STIV ++ + + I+R
Sbjct: 137 VTGTSANLSGCKSSLNASEAKIQLGDRVDFILDGGQVSGGVE--STIVAVNNDEL-KIIR 193
Query: 218 KGVCYDK-ILKILHK 231
+G + ILK K
Sbjct: 194 QGAIKESDILKTAGK 208
>gi|319650889|ref|ZP_08005026.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2]
gi|317397487|gb|EFV78188.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2]
Length = 347
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA LKK VVA PT+T+YGL +A N +A+ ++E K R + PL I +++ +
Sbjct: 24 AADLLKKNEVVAFPTETVYGLGGNAENDEAVRKIFEAKGRPSDNPLIIHIADKGKLDAFV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP+ A L+ PGP+T++FN E L+ +++ VAVR+PDH L
Sbjct: 84 TEIPQNAQA------LMDRFWPGPLTLIFNLKEGVLSHYATADLSTVAVRMPDHPVALAL 137
Query: 152 LKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
L P+A SAN S PS + +W L+ I G + P G ST+VD +
Sbjct: 138 LNKTGLPIAAPSANRSGRPSPTTADH---VWEDLNGRIAGLVDGGPTGVGVESTVVDCT- 193
Query: 210 ENVYSIVRKG 219
+V I+R G
Sbjct: 194 GDVPVILRPG 203
>gi|228942472|ref|ZP_04105009.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228975404|ref|ZP_04135960.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228982041|ref|ZP_04142334.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407]
gi|384189414|ref|YP_005575310.1| SUA5 protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|410677743|ref|YP_006930114.1| putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Bacillus thuringiensis Bt407]
gi|452201830|ref|YP_007481911.1| YrdC/Sua5 family protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228777705|gb|EEM25979.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407]
gi|228784386|gb|EEM32409.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228817214|gb|EEM63302.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326943123|gb|AEA19019.1| SUA5 protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|409176872|gb|AFV21177.1| putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Bacillus thuringiensis Bt407]
gi|452107223|gb|AGG04163.1| YrdC/Sua5 family protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 346
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|291520269|emb|CBK75490.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio fibrisolvens 16/4]
Length = 353
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 21/198 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI------- 92
A++ LK G +VA PT+T+YGL DAT+ +A +Y+ K R + PL + +++
Sbjct: 21 ASEILKNGGLVAFPTETVYGLGGDATDKEASRKIYQAKGRPSDNPLIVHIAKFEQLEQIT 80
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
TD+P+ A +F PGP+T+V N++E + E + VAVR+P++ L+
Sbjct: 81 TDLPETAKKLADAF------WPGPLTMVCNKNEVIPYETTGGLDTVAVRMPNNPVALALI 134
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
+ +A SAN S PS T + ++ L ++ ++DGG P G STIVDL+
Sbjct: 135 EESGCMIAAPSANTSGRPSPTKASHVYEDLSGKIEAILDGG----PVDIGLESTIVDLT- 189
Query: 210 ENVYSIVRKGVCYDKILK 227
E++ +I+R G +LK
Sbjct: 190 EDIVTILRPGYINMDMLK 207
>gi|219670827|ref|YP_002461262.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
DCB-2]
gi|219541087|gb|ACL22826.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
DCB-2]
Length = 348
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +++G +VALPT+T+YGL +A ++ A ++++K R + PL + +S++ + +
Sbjct: 21 AAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLAMVKRLV 80
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T L A+ PGP+T+V ++ + ++ + VA+R+P H +L+K P
Sbjct: 81 EEWTPQAALCADKFWPGPLTLVLEKTAFVPDVVSGGLGTVAIRMPQHPVALELIKEAGVP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T I+ ++ L ++ +++DGG P G ST++DL+ E V +I
Sbjct: 141 IAAPSANLSGKPSPTRGIHVWKDLKGKIPLILDGG----PCAVGVESTVLDLTGE-VPTI 195
Query: 216 VRKG 219
+R G
Sbjct: 196 LRPG 199
>gi|423362832|ref|ZP_17340332.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD022]
gi|401077106|gb|EJP85451.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD022]
Length = 346
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|417998867|ref|ZP_12639081.1| RNA binding protein [Lactobacillus casei T71499]
gi|410540197|gb|EKQ14715.1| RNA binding protein [Lactobacillus casei T71499]
Length = 333
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMQAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|358066133|ref|ZP_09152667.1| hypothetical protein HMPREF9473_04730 [Clostridium hathewayi
WAL-18680]
gi|356695996|gb|EHI57621.1| hypothetical protein HMPREF9473_04730 [Clostridium hathewayi
WAL-18680]
Length = 356
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 104/193 (53%), Gaps = 11/193 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G +VA PT+T+YGL +A + +A +YE K R + PL V+ D+ +
Sbjct: 22 AARILRNGGLVAFPTETVYGLGANALDEEAARKIYEAKGRPSDNPLIAHVARKEDVEQLV 81
Query: 100 DTH--TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+H +L+ PGP+T+VF +S + + VA+R+P +L+ L
Sbjct: 82 -SHIPEAGQKLMDAYWPGPLTLVFPKSGIVPYGTTGGLETVAIRMPSDTIANRLIALAGV 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + +Q + ++ +++DGG P G STIVD+S +V S
Sbjct: 141 PIAAPSANTSGRPSPTTAEHVYQDMNGKIEMIVDGG----PVGIGLESTIVDVS-GDVPS 195
Query: 215 IVRKGVCYDKILK 227
++R G ++L+
Sbjct: 196 MLRPGAVTIEMLR 208
>gi|326386145|ref|ZP_08207769.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370]
gi|326209370|gb|EGD60163.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370]
Length = 320
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 5/193 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G +VA+PT+T+YGLA A +A+ +Y K R PL + V++I + A
Sbjct: 24 AAEVIREGGLVAVPTETVYGLAARADRDEAVAGIYRAKGRPDFNPLIVHVADIAGAERLA 83
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +L+ PGP+T+V R E L ++ + VA+R P H +R L++
Sbjct: 84 HLDATARKLIEAFWPGPLTLVVPRREDAGLSAAVSAGLPTVALRCPAHPVMRALIEAAGV 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PLA SAN S S T + F L ++ +++DGG + STIV + ++++
Sbjct: 144 PLAAPSANRSGGVSPTTADHVFSSLGHRVDLILDGGTCAR--GLESTIVGVRPGGRWTLL 201
Query: 217 RKGVCYDKILKIL 229
R G + L L
Sbjct: 202 RPGPIDRETLAAL 214
>gi|218900451|ref|YP_002448862.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842]
gi|228968453|ref|ZP_04129442.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402563077|ref|YP_006605801.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis HD-771]
gi|423565784|ref|ZP_17542059.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MSX-A1]
gi|218543168|gb|ACK95562.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842]
gi|228791233|gb|EEM38846.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401193466|gb|EJR00472.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MSX-A1]
gi|401791729|gb|AFQ17768.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis HD-771]
Length = 346
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|418004871|ref|ZP_12644877.1| putative RNA-binding protein [Lactobacillus casei UW1]
gi|410548442|gb|EKQ22643.1| putative RNA-binding protein [Lactobacillus casei UW1]
Length = 333
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAEMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMEAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|257416746|ref|ZP_05593740.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis ARO1/DG]
gi|257158574|gb|EEU88534.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis ARO1/DG]
Length = 340
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNETAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKG- 219
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGEIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 220 VCYDKILKILHKY----HLVEKNTFP 241
+ +++ I+ + HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|116494653|ref|YP_806387.1| translation factor [Lactobacillus casei ATCC 334]
gi|418001798|ref|ZP_12641929.1| RNA binding protein [Lactobacillus casei UCD174]
gi|116104803|gb|ABJ69945.1| translation factor SUA5 [Lactobacillus casei ATCC 334]
gi|410545611|gb|EKQ19901.1| RNA binding protein [Lactobacillus casei UCD174]
Length = 333
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMQAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|417983236|ref|ZP_12623875.1| RNA binding protein [Lactobacillus casei 21/1]
gi|417992675|ref|ZP_12633028.1| RNA binding protein [Lactobacillus casei CRF28]
gi|417996012|ref|ZP_12636297.1| RNA binding protein [Lactobacillus casei M36]
gi|418012424|ref|ZP_12652140.1| RNA binding protein [Lactobacillus casei Lpc-37]
gi|410528656|gb|EKQ03504.1| RNA binding protein [Lactobacillus casei 21/1]
gi|410532876|gb|EKQ07571.1| RNA binding protein [Lactobacillus casei CRF28]
gi|410536165|gb|EKQ10765.1| RNA binding protein [Lactobacillus casei M36]
gi|410556841|gb|EKQ30700.1| RNA binding protein [Lactobacillus casei Lpc-37]
Length = 333
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMQAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|417986510|ref|ZP_12627078.1| RNA binding protein [Lactobacillus casei 32G]
gi|410525565|gb|EKQ00465.1| RNA binding protein [Lactobacillus casei 32G]
Length = 333
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMQAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|182413416|ref|YP_001818482.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1]
gi|177840630|gb|ACB74882.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1]
Length = 331
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ L+ G +VA+PT+T+YGLA +A +++A ++ K R N PL + + + + A+
Sbjct: 21 ARMLRDGELVAVPTETVYGLAANALDARACRKIFRAKGRPANDPLIVHIHDRAQLDLLAE 80
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
T++ + L PGP+T+V R + ++ + VAVR+P H RQLL+ P+A
Sbjct: 81 TNSAAERLARAFWPGPLTMVLPRRSIVPAVVSSGLPSVAVRMPAHPLFRQLLRRAGMPVA 140
Query: 161 LTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
SAN S T + L ++ ++DGG P STIVDL + ++R G
Sbjct: 141 APSANPFGYISPTSAAHVRAGLGRRIPAILDGG--ECPIGVESTIVDLRDPRHPQLLRPG 198
Query: 220 VCYDKILK 227
+ L+
Sbjct: 199 AVSRRELE 206
>gi|424628948|ref|ZP_18067245.1| SUA5 domain protein, partial [Vibrio cholerae HC-51A1]
gi|408057634|gb|EKG92473.1| SUA5 domain protein, partial [Vibrio cholerae HC-51A1]
Length = 191
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 17 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 77 TDIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 136
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
+A SAN + S + L +L+ V+DGG + STIVDL+ +
Sbjct: 137 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSK 187
>gi|75762684|ref|ZP_00742523.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228903800|ref|ZP_04067916.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL
4222]
gi|434378444|ref|YP_006613088.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis HD-789]
gi|74489830|gb|EAO53207.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228855827|gb|EEN00371.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL
4222]
gi|401877001|gb|AFQ29168.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis HD-789]
Length = 346
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|256616931|ref|ZP_05473777.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
4200]
gi|307276804|ref|ZP_07557915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134]
gi|256596458|gb|EEU15634.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
4200]
gi|306506441|gb|EFM75600.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134]
Length = 340
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKIL-----KILHKYHLVEKNTFP 241
+ L ++ HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|312899931|ref|ZP_07759249.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470]
gi|311292927|gb|EFQ71483.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470]
Length = 340
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAKHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKIL-----KILHKYHLVEKNTFP 241
+ L ++ HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|389860484|ref|YP_006362723.1| translation factor SUA5 [Thermogladius cellulolyticus 1633]
gi|388525387|gb|AFK50585.1| translation factor SUA5 [Thermogladius cellulolyticus 1633]
Length = 354
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL +A N ++ ++E+K+R + PL I V + + + A
Sbjct: 20 AADVIRRGGLVAFPTETVYGLGANAYNKSSVLRIFEVKQRPADNPLIIHVDSLDMLHEVA 79
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +++L+++ PGP+T++ ++E + E + VAVR+P H +L+ P
Sbjct: 80 RDIPEEAYKLMSKFWPGPLTLILPKTERVPYEATGGLDTVAVRMPAHPVALRLISRSGVP 139
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+A SAN S PS T + + L+S++ ++ID G
Sbjct: 140 IAAPSANLSGRPSPTRGEHVVEDLYSKVEMIIDAG 174
>gi|191638152|ref|YP_001987318.1| translation factor SUA5 [Lactobacillus casei BL23]
gi|239631746|ref|ZP_04674777.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301066211|ref|YP_003788234.1| translation factor [Lactobacillus casei str. Zhang]
gi|385819855|ref|YP_005856242.1| Putative translation factor (SUA5) [Lactobacillus casei LC2W]
gi|385823052|ref|YP_005859394.1| Putative translation factor (SUA5) [Lactobacillus casei BD-II]
gi|409997018|ref|YP_006751419.1| tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Lactobacillus casei W56]
gi|417980469|ref|ZP_12621149.1| putative RNA-binding protein [Lactobacillus casei 12A]
gi|418010583|ref|ZP_12650358.1| putative RNA-binding protein [Lactobacillus casei Lc-10]
gi|190712454|emb|CAQ66460.1| Translation factor SUA5 [Lactobacillus casei BL23]
gi|239526211|gb|EEQ65212.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300438618|gb|ADK18384.1| Putative translation factor (SUA5) [Lactobacillus casei str. Zhang]
gi|327382182|gb|AEA53658.1| Putative translation factor (SUA5) [Lactobacillus casei LC2W]
gi|327385379|gb|AEA56853.1| Putative translation factor (SUA5) [Lactobacillus casei BD-II]
gi|406358030|emb|CCK22300.1| Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Lactobacillus casei W56]
gi|410524792|gb|EKP99699.1| putative RNA-binding protein [Lactobacillus casei 12A]
gi|410553823|gb|EKQ27816.1| putative RNA-binding protein [Lactobacillus casei Lc-10]
Length = 333
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAEMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMEAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|309808063|ref|ZP_07701981.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
01V1-a]
gi|308168665|gb|EFO70765.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
01V1-a]
Length = 331
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP AD +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIP--ADAQ----KLIDYFWPGPLTLILFIKEGALPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 214
>gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040437|gb|ACT57233.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 330
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
I+ +TD A A + L G +A+PT+T+YGLA D+ N AI LYEIKKR PL
Sbjct: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN--RSEHLNLELNPNVTKVAVRIPDH 145
VS+I+ + K A +S L PGP+T+V + + ++ N+ R+P
Sbjct: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
Query: 146 KFLRQLLKLMDSPLALTSANESNEPSTLCINEF--QKLWSQLSVVIDGGIISNPERFG-- 201
F ++L++ PLA+ SAN S + S + + ++ ++IDGGI + G
Sbjct: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLE 177
Query: 202 STIVDLSEENVYSIVRKG 219
STIV++ E I+R G
Sbjct: 178 STIVNVQCEKKVRILRPG 195
>gi|302191109|ref|ZP_07267363.1| hypothetical protein LineA_03797 [Lactobacillus iners AB-1]
gi|312873862|ref|ZP_07733905.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
2052A-d]
gi|325913035|ref|ZP_08175408.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B]
gi|311090644|gb|EFQ49045.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
2052A-d]
gi|325477715|gb|EGC80854.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B]
Length = 331
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIPADAQ------KLIDHFWPGPLTLILFVKEGALPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IHTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 214
>gi|227535364|ref|ZP_03965413.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227186960|gb|EEI67027.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 333
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 TITPLAAKLMEAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|270308141|ref|YP_003330199.1| translation factor SUA5 [Dehalococcoides sp. VS]
gi|270154033|gb|ACZ61871.1| translation factor SUA5 [Dehalococcoides sp. VS]
Length = 213
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK+G VV PTDT+Y + A N+ A+N +++IK R K L + +++ I + A
Sbjct: 17 AVRILKEGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDVSQINQVA 76
Query: 100 DTH-TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L AE PG +T+V ++ ++ LEL VA+RIP+ + ++LK + P
Sbjct: 77 KVFPELARKLAAEYWPGGLTLVLPKTNNIPLELTGGNETVAIRIPNQPAVIEMLKRIGEP 136
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S S+L E + +L ++ ++DGG +S STIV ++ N I+R
Sbjct: 137 ITGTSANLSGCKSSLNAAEARSQLGDRVDFILDGGQVSGGVE--STIVAVN-NNELKIIR 193
Query: 218 KGVCYD-KILKILHKYHL 234
+G + ILK K +L
Sbjct: 194 QGAIKEADILKTAGKTNL 211
>gi|383785066|ref|YP_005469636.1| Sua5/YciO/YrdC/YwlC family protein [Leptospirillum ferrooxidans
C2-3]
gi|383083979|dbj|BAM07506.1| putative Sua5/YciO/YrdC/YwlC family protein [Leptospirillum
ferrooxidans C2-3]
Length = 332
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G VA PT+T+YGL DA+N AI ++ IK R + PL + ++++T + WA
Sbjct: 14 GAALLKAGETVAFPTETVYGLGADASNPLAIQKVFTIKGRPSDHPLIVHIADVTQLDLWA 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ V + L A PGP+T++ R + E+ VAVRIPDH LL+
Sbjct: 74 ENIPRVVWRLSARFWPGPLTLILPRRREVPKEVTGGQDTVAVRIPDHPVATALLQAFGGG 133
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ SAN S T + + L S++ +V+DGG
Sbjct: 134 IVGPSANMFGRVSPTTAQHVREGLGSKVGMVLDGG 168
>gi|289435803|ref|YP_003465675.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289172047|emb|CBH28593.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 345
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN AI +YE K R + PL + ++ + +
Sbjct: 21 AAELLRNGECVAFPTETVYGLGADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFV 80
Query: 100 DTH-TVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+K
Sbjct: 81 ASYPQKAIKLMEKFWPGPLTVILPLKKDSLASNVSAGLSTVGVRMPEHPVSLALIKEAGI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG ST++D S E +
Sbjct: 141 PVAAPSANRSGKPSPTSASHVIEDLDDKVAGIIDGGATGV--GLESTVIDCSTEIPVILR 198
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
G+ ++I +++ L +T
Sbjct: 199 PGGITKEQIEQVIGSVELANNDT 221
>gi|228961589|ref|ZP_04123198.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632646|ref|ZP_17608391.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD154]
gi|228798071|gb|EEM45075.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401259292|gb|EJR65468.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD154]
Length = 346
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISENVTAGLNTVGVRMPDHPIAIALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|328951772|ref|YP_004369106.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
11109]
gi|328452096|gb|AEB07925.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
11109]
Length = 202
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
Q L G ++A PTDT YG+ CD N KAI +Y+ KKR + KP + +++ I ++A
Sbjct: 20 QVLTAGGIIAYPTDTCYGIGCDLFNKKAIEKIYQFKKRPLTKPFSFICADLKHISEYAKV 79
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+++ + LLPGP T + S + + +R+PD+ L+KL+ P+
Sbjct: 80 SNFAYKTMRRLLPGPYTFILEGSRLVPKIMLTRRKTAGLRVPDNAICLGLVKLLGHPIIS 139
Query: 162 TSANESNE---PSTLCINEFQKLWSQLSVVIDGGIIS-NPERFGSTIVDLSEENVYSIVR 217
TSA+ + I E+ K L +VIDGG+I+ P S I D+ E ++R
Sbjct: 140 TSASREDGSVMSDPYDIAEYYK--PPLDLVIDGGVIAPAPSSVISLIGDVPE-----VIR 192
Query: 218 KG 219
+G
Sbjct: 193 EG 194
>gi|283796629|ref|ZP_06345782.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1]
gi|291076052|gb|EFE13416.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1]
Length = 377
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 9/187 (4%)
Query: 45 KKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKWADTHT 103
++G +VA PT+T+YGL +A + A +YE K R + PL +++ + P A+
Sbjct: 53 REGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADFEALAPLTAEIPE 112
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+L PGP+T+VF +S + + VAVR+P R+L++L P+A S
Sbjct: 113 AGRKLAEAFWPGPLTMVFKKSGVVPHGTTGGLETVAVRMPSDPVARELIRLAGVPIAAPS 172
Query: 164 ANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKGV 220
AN S PS T + Q + ++ +++DGG P G STIVD++EE + +++R G
Sbjct: 173 ANTSGRPSPTRAEHVLQDMDGKIEMIVDGG----PVGIGVESTIVDVTEE-IPTLLRPGA 227
Query: 221 CYDKILK 227
++L+
Sbjct: 228 VTMEMLR 234
>gi|312874663|ref|ZP_07734687.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
2053A-b]
gi|311089893|gb|EFQ48313.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
2053A-b]
Length = 331
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP AD +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIP--ADAQ----KLIDYFWPGPLTLILFIKKGALPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IQTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 214
>gi|423618973|ref|ZP_17594806.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD115]
gi|401252449|gb|EJR58710.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD115]
Length = 347
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 NEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + +
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSK- 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|300855871|ref|YP_003780855.1| translation factor [Clostridium ljungdahlii DSM 13528]
gi|300435986|gb|ADK15753.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
Length = 349
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
A+ LKKG VVA+PT+T+YGLA DA N A+ ++++K R + PL + + ++ DI
Sbjct: 26 GAEYLKKGEVVAIPTETVYGLAADAFNENAVKKIFKVKGRPQDNPLLVHIYKLEQVYDIC 85
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K D H + ++ PG VT++FN+ + ++ ++ + V VR P + R ++K
Sbjct: 86 K--DIHKDAEKVFDAFWPGSVTLIFNKKDCISDTVSAGMKTVGVRFPKSEVARAIIKESG 143
Query: 157 SPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
+ L SAN S +PST + L ++ ++DGG P G STI+D+S +
Sbjct: 144 TLLVAPSANLSGKPSTTSAEHCYNDLNGKIPCILDGG----PCSIGLESTIIDMSTPDPV 199
Query: 214 SIVRKGVCYDKILKIL 229
+ + D I K++
Sbjct: 200 LLRPGAISLDDIRKVI 215
>gi|37523508|ref|NP_926885.1| hypothetical protein gll3939 [Gloeobacter violaceus PCC 7421]
gi|35214512|dbj|BAC91880.1| gll3939 [Gloeobacter violaceus PCC 7421]
Length = 223
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 14/209 (6%)
Query: 33 DPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
DP+ L Q L+ G V+ PTDT Y + CD + AI + IK+ +KPL
Sbjct: 11 DPQPERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCP 70
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLR 149
++++ +A ++ L+ LLPGP T + + L L L+P +R+PDH +
Sbjct: 71 SLSNVATYARVGDDAYRLMRHLLPGPYTFLLPATRALPKLVLDPKRRTTGIRVPDHPLCQ 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGI-ISNPERFG------S 202
LL + +PL TSA ++ I +L+ L+ V+DG + + P + G S
Sbjct: 131 ALLAGLGNPLISTSARSADGSE---IRYEYELFEALAPVVDGIVELDPPAQDGLLLTQVS 187
Query: 203 TIVDLSEENVYSIVRKGVCYDKILKILHK 231
T++DLS E +VR+G+ +++ L +
Sbjct: 188 TVIDLSGEQPV-VVRRGLGWERAATFLQR 215
>gi|15668233|ref|NP_247026.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM
2661]
gi|2500922|sp|Q60369.1|Y062_METJA RecName: Full=Uncharacterized protein MJ0062
gi|1498824|gb|AAB98044.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM
2661]
Length = 207
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +V TDTLYG++ +A N KA+ +Y IK+R+ NKPL+ICV + +I K+A + ++
Sbjct: 32 GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALTS 163
+++ + LPGP+TI+ + + P++ + +RIPD +R+L + PL TS
Sbjct: 92 KIIDKFLPGPLTIILKKKPGI-----PDIVAKDYIGIRIPDEPIIRELSIV---PLTTTS 143
Query: 164 ANESNEPSTLCINEFQK-LWSQLSVVIDGG 192
AN S + S ++E K + ++ VID G
Sbjct: 144 ANISGKESPTTVDEIDKEVLKKVDYVIDIG 173
>gi|404482923|ref|ZP_11018148.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales bacterium
OBRC5-5]
gi|404344013|gb|EJZ70372.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales bacterium
OBRC5-5]
Length = 365
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +K G +VA PT+T+YGL +A +A +Y K R + PL + +S+ D+ A
Sbjct: 30 AAIIIKNGGLVAFPTETVYGLGANALMPEAAKKIYAAKGRPSDNPLIVHISKTEDVKDIA 89
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D + + L + PGP+T+V + + + + VA+R+P+ R L+++ P
Sbjct: 90 NDIPELFYTLANKFWPGPMTVVLKKKSIIPDATSGGLDTVAIRLPESNIARALIEVAGVP 149
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + F+ + S++ ++IDGG + G STIVDL+ EN ++
Sbjct: 150 IAAPSANTSGRPSPTKASHVFEDMNSKIEMIIDGGEVG----IGVESTIVDLT-ENTPTL 204
Query: 216 VRKGVCYDKILK 227
+R G ++L+
Sbjct: 205 LRPGAITLEMLR 216
>gi|315652210|ref|ZP_07905205.1| Sua5/YciO/YrdC/YwlC family protein [Lachnoanaerobaculum saburreum
DSM 3986]
gi|315485516|gb|EFU75903.1| Sua5/YciO/YrdC/YwlC family protein [Lachnoanaerobaculum saburreum
DSM 3986]
Length = 366
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 9/187 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA +K G +VA PT+T+YGL DA +A +Y K R + PL + +SEI ++
Sbjct: 32 LAADIIKSGGLVAFPTETVYGLGADAFMEEAAKKIYVAKGRPSDNPLIVHISEIREVDDI 91
Query: 99 AD-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ + + L + PGP+T+V + + + + VAVR+PD+ R ++K
Sbjct: 92 AECIPDIFYSLAKKYWPGPMTVVLKKRNIVPDATSGGLDTVAVRLPDNNIARAIIKESGV 151
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + + + ++ ++IDGG + G STI+DL+ ++ +
Sbjct: 152 PIAAPSANTSGRPSPTKARHVLEDMNGKIDMIIDGGTVG----IGVESTIIDLT-SDIPT 206
Query: 215 IVRKGVC 221
++R G
Sbjct: 207 LLRPGAV 213
>gi|417989402|ref|ZP_12629908.1| putative translation factor [Lactobacillus casei A2-362]
gi|410538491|gb|EKQ13044.1| putative translation factor [Lactobacillus casei A2-362]
Length = 333
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 AITPLAAKLMEAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|255975088|ref|ZP_05425674.1| translation factor SUA5 [Enterococcus faecalis T2]
gi|307285599|ref|ZP_07565738.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860]
gi|255967960|gb|EET98582.1| translation factor SUA5 [Enterococcus faecalis T2]
gi|306502823|gb|EFM72088.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860]
Length = 340
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKIL-----KILHKYHLVEKNTFP 241
+ L ++ HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|229007631|ref|ZP_04165225.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4]
gi|228753642|gb|EEM03086.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4]
Length = 340
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 17 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSKSQLKGIV 76
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP+ A+ L+ PGP+TI+ + E ++ ++ + V VR+PDH L+
Sbjct: 77 REIPEVAEV------LMKHFWPGPLTIILPKKEGISEKVTAGLDTVGVRMPDHPVALALI 130
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 131 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE- 187
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 188 VPTILRPG 195
>gi|257087539|ref|ZP_05581900.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6]
gi|422724657|ref|ZP_16781133.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2137]
gi|256995569|gb|EEU82871.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6]
gi|315025304|gb|EFT37236.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2137]
Length = 340
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNKAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKIL-----KILHKYHLVEKNTFP 241
+ L ++ HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|392958765|ref|ZP_10324272.1| SUA5 protein [Bacillus macauensis ZFHKF-1]
gi|391875235|gb|EIT83848.1| SUA5 protein [Bacillus macauensis ZFHKF-1]
Length = 379
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
+ AA +K+ VVA PT+T+YGL +A N +AI +++ K R + PL + +++ +
Sbjct: 54 MQAALWIKENEVVAFPTETVYGLGGNAQNDEAITKIFQAKGRPSDNPLIVHIAKYEQLEG 113
Query: 98 W-ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
++ + +L+ PGP+T++ + EH+ ++ ++ V VR+PDH L++ +
Sbjct: 114 LVSEVSPTARKLMDAFWPGPLTLIMPKGEHVAHQVTAGLSTVGVRMPDHPVALALIEEAN 173
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS T + + L + ++DGG ST+VD S +V +I
Sbjct: 174 LPIAAPSANRSGRPSPTTAQHVYHDLKGAIPAIVDGGATG--VGVESTVVDCS-GDVVAI 230
Query: 216 VRKG 219
+R G
Sbjct: 231 LRPG 234
>gi|366053828|ref|ZP_09451550.1| hypothetical protein LsueK3_09956 [Lactobacillus suebicus KCTC
3549]
Length = 341
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + G +VA PT+T+YGL DATN A++ +Y K R + PL + V+++ + K+A
Sbjct: 14 AADLITNGQLVAFPTETVYGLGSDATNETAVSQVYAAKGRPSDNPLIVHVADVETVEKYA 73
Query: 100 DTHT-VSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + +L+A+ PG +TI+F + + L+ + +T A R P+++ +L+KL
Sbjct: 74 AIISPAARKLMAKFWPGSLTIIFKLKPDVLSKTVTGGLTTAAFRFPNNQATLKLIKLAGR 133
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
P+ SAN S +PS Q ++ LS I G + P + G ST++D+S + I
Sbjct: 134 PIVGPSANTSGKPSPTTA---QHVYHDLSGKIAGILDDGPTKVGVESTVLDMSTDTPV-I 189
Query: 216 VRKGVCYDK-----ILKILHKYHLVEKNTFP 241
+R G I I +H V +N P
Sbjct: 190 LRPGAVTQAQIEAVIGSIDTNHHQVGQNETP 220
>gi|228911164|ref|ZP_04074970.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL
200]
gi|228848527|gb|EEM93375.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL
200]
Length = 346
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSP-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|82701740|ref|YP_411306.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196]
gi|82409805|gb|ABB73914.1| translation factor SUA5 [Nitrosospira multiformis ATCC 25196]
Length = 364
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LKKG VVA PT+T+YGL + ++ A+ ++EIKKR ++ PL + ++ + + WA
Sbjct: 12 AAALLKKGGVVAFPTETVYGLGAEVSSPSAVARIFEIKKRPLDHPLIVHFADASRLSHWA 71
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM--D 156
LAE PGP+T++ RS H+ ++ V +R+PDH LL+ + D
Sbjct: 72 REVPQQAWRLAECFWPGPLTLILPRSRHVPEKVTGGQDTVGLRVPDHPVALALLRELGPD 131
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
LA SAN S T + ++ +L +V+DGG P + G STIV +
Sbjct: 132 RALAAPSANRFGHVSPTTAAHVREEFGDELDMVLDGG----PCQVGLESTIVGFEGQTAV 187
Query: 214 SIVRKGVCYDKILKIL 229
+ G+ + ++L
Sbjct: 188 ILRPGGIQLAALAEVL 203
>gi|259501683|ref|ZP_05744585.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335]
gi|315653746|ref|ZP_07906666.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195]
gi|259166968|gb|EEW51463.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335]
gi|315489108|gb|EFU78750.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195]
Length = 338
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 21 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 80
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 81 TEIPADAQ------KLIDHFWPGPLTLILFVKEGALPDAVTGGLPTAAFRCPQDPLTNEL 134
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 135 IHTLARPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 190
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++LHK L+ K T
Sbjct: 191 VDQPVVLRPGEITPDELSEVLHKKVLLNKGT 221
>gi|110832995|ref|YP_691854.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
gi|123345894|sp|Q0VTD8.1|RIMN_ALCBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
biosynthesis protein RimN
gi|110646106|emb|CAL15582.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
Length = 182
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L AAQ +++G VVA PT+++YGL CD N A+ L IK R V+K L + + +
Sbjct: 6 LSAAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAP 65
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + L + P P+T + + S+ L + KVAVR+PDH RQL +L
Sbjct: 66 YLHLNEQQSAQLEKKWPAPITYLVDASDRLPAWVRGEHRKVAVRVPDHPLARQLCQLAGQ 125
Query: 158 PLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGI--ISNPERFGSTIVDLSEENV 212
P+ TSAN S P+ N +Q +L +QL ++ G + P STI+DL +
Sbjct: 126 PIISTSANISGRPAAR--NRYQVARQLGNQLDFIVSGACDRAAKP----STIIDLESGRI 179
>gi|354581614|ref|ZP_09000517.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus lactis 154]
gi|353200231|gb|EHB65691.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus lactis 154]
Length = 390
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 25 MCSIVKVTDPKAALL-AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
M S + + + ALL A + L G +VA PT+T+YGL DA +++A+ ++ K R +
Sbjct: 38 MESGSRTPEEEQALLEAGRVLAGGGLVAFPTETVYGLGADAGSTEAVERIFAAKGRPSDN 97
Query: 84 PLAICVSEITDIPKWA----DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKV 138
PL + +S+++ + A DT L+ PGP+++V + ++ + + V
Sbjct: 98 PLIVHISDLSQLDDLALRVNDTERA---LMKAFWPGPLSLVLPVKPGAVSSRVTAGLDTV 154
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNP 197
AVR+PDH L++ PLA SAN S PS TL + + L + V+DGG P
Sbjct: 155 AVRMPDHPAALALIRAAGCPLAAPSANRSGRPSPTLAGHVLEDLAGAIDGVLDGG----P 210
Query: 198 ERFG--STIVDLSEENVYSIVRKG 219
G ST+V E+ +++R G
Sbjct: 211 AGVGVESTVVQAGEDGAVTVLRPG 234
>gi|424860150|ref|ZP_18284116.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus opacus PD630]
gi|356661038|gb|EHI41383.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus opacus PD630]
Length = 228
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+ G +V PTDTLY + DA N +A++ L K+R +KP ++ V P+
Sbjct: 19 AGDALRSGRLVVFPTDTLYAVGSDAFNREAVHALLSAKQRSGDKPASVLVGS----PESL 74
Query: 100 DTHTVSFELLAELL-----PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
D S L A L PG +++V + HL +L + VR+P H +LL
Sbjct: 75 DDLVASVPLSAHQLIQAFWPGALSLVLQAAPHLTCDLGRTRGTIMVRMPLHPVALELLAA 134
Query: 155 MDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
P+A +SAN++ P + + +K L + +SV +DGG+ + STIVDLS
Sbjct: 135 --GPIAQSSANQTGRPPATTVEQARKYLGAAVSVYLDGGMTGD---LPSTIVDLSTSRQP 189
Query: 214 SIVRKGV 220
+I+R+G
Sbjct: 190 AILREGA 196
>gi|255038761|ref|YP_003089382.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
18053]
gi|254951517|gb|ACT96217.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
18053]
Length = 208
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 10/193 (5%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIK--KRDVNKPLAICVS 90
D + CL+ G +V PTDT+YGL CD N++A+ + IK K N IC
Sbjct: 14 DERRVRQVVDCLRNGGLVIYPTDTVYGLGCDIYNTRAVEKIARIKGIKPQKNDFSFICY- 72
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+++ I +A +F+ + +LPGP T + + ++ LN N V +R+PD+ R
Sbjct: 73 DLSHISDFARVGNTAFKTMKRVLPGPYTFILEATSNVPKLLNTNKKTVGIRVPDNLIPRL 132
Query: 151 LLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
++K + +P+ TS + +E + F+K Q+ +V+DGG N STIV
Sbjct: 133 IVKELGNPIVTTSIRDDDEIIEYSTDPELIFEKFQHQVDMVVDGGYGGN---VASTIVKA 189
Query: 208 SEENVYSIVRKGV 220
++ + I+R+G+
Sbjct: 190 DGDD-FEIIREGL 201
>gi|452205059|ref|YP_007485188.1| YrdC/Sua5 family protein [Dehalococcoides mccartyi BTF08]
gi|452112115|gb|AGG07846.1| YrdC/Sua5 family protein [Dehalococcoides mccartyi BTF08]
Length = 213
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 6/195 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A Q LK G VV PTDT+Y + A N+ A+N +++IK R K L + +I+ I + A
Sbjct: 17 AVQVLKNGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDISQIHQVA 76
Query: 100 DTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L AE PG +T+V +++++ LEL VA+RIP+ + ++LK + P
Sbjct: 77 KIFPPLARKLAAEYWPGGLTLVLPKTDNIPLELTGGNETVAIRIPNQAAVIEMLKRVAEP 136
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S S+L +E + +L ++ ++DGG +S STIV ++ + + I+R
Sbjct: 137 VTGTSANLSGCKSSLNASEAKIQLGDRVDFILDGGQVSGGVE--STIVAVNNDEL-KIIR 193
Query: 218 KGVCYDK-ILKILHK 231
+G + I+K K
Sbjct: 194 QGAIKESDIMKTAGK 208
>gi|402554583|ref|YP_006595854.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus FRI-35]
gi|401795793|gb|AFQ09652.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus FRI-35]
Length = 346
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+T L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 KEIPPVAET------LMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D +
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA- 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|284163341|ref|YP_003401620.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM
5511]
gi|284012996|gb|ADB58947.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM
5511]
Length = 202
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 7/190 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS--EITDIPK 97
AA+ ++ G +V PT+T+YGL D ++ A+ ++E K RD +KP+++ V E
Sbjct: 9 AAEAIRAGELVVYPTETVYGLGADGLDADAVERVFEAKGRDRSKPVSVAVPTFETALEEG 68
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ E LPGPVT++ R+E L L +V +R+PD + + L+ +
Sbjct: 69 YVRASERERAFADEFLPGPVTLLCERTEALPDVLTAGRDRVGIRVPDCEPALRFLEAAER 128
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGSTIVDLSEENVYSI 215
P+ TSAN S EPS + + + +VV++ + S E ST+VDL E ++
Sbjct: 129 PVTATSANVSGEPSARRVEDIGQQVLDEAVVLEADDLYESIEETVPSTVVDLEAETIH-- 186
Query: 216 VRKGVCYDKI 225
R+G D+I
Sbjct: 187 -RRGALADEI 195
>gi|414170451|ref|ZP_11426037.1| Sua5/YciO/YrdC/YwlC family protein [Afipia clevelandensis ATCC
49720]
gi|410884601|gb|EKS32425.1| Sua5/YciO/YrdC/YwlC family protein [Afipia clevelandensis ATCC
49720]
Length = 370
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+CL+ G +VA PT+T+YGL CDATN++A+ LYE K R PL VS++ K A
Sbjct: 63 RCLEDGGLVAFPTETVYGLGCDATNARAVARLYEAKGRPSFNPLIAHVSDLQAARKIARF 122
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
S L PGP+T+V ++ + + +AVR+P H R +L+ P+
Sbjct: 123 DETSLRLAEAFWPGPLTLVLPKATGCPVSDLATAGLETIAVRVPAHPVARDILRAFGKPV 182
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIIS 195
SAN S S T + L ++ +++DGG +S
Sbjct: 183 VAPSANISGHVSPTTAEHVLGDLDGRIDLIVDGGPVS 219
>gi|374386734|ref|ZP_09644231.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter laneus YIT 12061]
gi|373223295|gb|EHP45645.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter laneus YIT 12061]
Length = 190
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 2/180 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LKKG ++ PTDT++G+ CDAT++KA+ +YE+K+R+ NK + + + + I +A
Sbjct: 12 ATEILKKGGIILYPTDTIWGIGCDATDAKAVQRIYELKQREDNKSMLVLLDDAGKIASYA 71
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
D ++ +L+ E+ P TI++ + +L L + +RI + F + LL PL
Sbjct: 72 DVPEIALQLI-EVSNKPTTIIYPNARNLAANLINADQTIGIRITEEAFSKALLFRFRKPL 130
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S +PS C + +++ + + ++D S+I+ L + I+RK
Sbjct: 131 VSTSANISGQPSPACFADISEEIKNAVDYIVDFRRQETRPCSPSSIIKLGMDGSIQILRK 190
>gi|205375324|ref|ZP_03228114.1| SUA5 protein [Bacillus coahuilensis m4-4]
Length = 339
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ L++ VVA PT+T+YGL +AT+S+A+ +YE K R + PL + + + +
Sbjct: 18 AAELLQRNEVVAFPTETVYGLGANATSSEAVRKIYEAKGRPSDNPLIVHIDDKRQLGDLV 77
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ ++ L+ E PGP+TI+F + + ++ + VA+R+PDH R +L +
Sbjct: 78 AEIPASAYLLMDEFWPGPLTIIFAKKPGVFSDIVTAGLDTVAIRVPDHPVARAILHETNL 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + L +++ ++DGG P G ST++D +
Sbjct: 138 PIAAPSANRSGRPSPTTAHHVATDLTGRIAGIVDGG----PTGVGVESTVIDCTVTPPMI 193
Query: 215 IVRKGVCYDKILKIL 229
+ GV ++I +++
Sbjct: 194 LRPGGVTAEQIREVI 208
>gi|414171806|ref|ZP_11426717.1| Sua5/YciO/YrdC/YwlC family protein [Afipia broomeae ATCC 49717]
gi|410893481|gb|EKS41271.1| Sua5/YciO/YrdC/YwlC family protein [Afipia broomeae ATCC 49717]
Length = 328
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 36 AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
AA AA+CL+ G +VA PT+T+YGL DATN++A+ LYE K R PL V ++
Sbjct: 15 AADTAARCLEGGGLVAFPTETVYGLGADATNARAVARLYEAKGRPSFNPLIAHVGDLQAA 74
Query: 96 PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLK 153
+ A S L PGP+T+V ++ + + VAVR+P H ++L+
Sbjct: 75 RRIARFDDRSLRLAETFWPGPLTLVLPKAPGCPVSDLATAGLETVAVRVPAHPVAHEILR 134
Query: 154 LMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIIS 195
P+ SAN S S T + F L ++ +++DGG +S
Sbjct: 135 AFGKPIVAPSANISGHVSPTTAEHVFGDLSGRIDLIVDGGPVS 177
>gi|423438730|ref|ZP_17415711.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG4X12-1]
gi|401115857|gb|EJQ23703.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG4X12-1]
Length = 346
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAVAFPTETVYGLGANAMDDEAIVKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+A PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMAHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPIALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|295112222|emb|CBL28972.1| Sua5/YciO/YrdC/YwlC family protein [Synergistetes bacterium SGP1]
Length = 327
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G +VA PT+T+YGL +A N +A+ +Y K R + PL + +S +
Sbjct: 21 AAEVLRSGGLVAFPTETVYGLGANALNPEAVKGIYRAKGRPSDNPLILHLSRVEQAEPLV 80
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ L+ PGP+T+V + + +E ++ A+R+P H L+ + PL
Sbjct: 81 CVDERARRLMRAFWPGPLTLVLRARDVVPMEARGGLSTAALRMPSHPVASALIDAVGFPL 140
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
A SAN S PS T ++ L ++ +++DGG +S ST++D+SEE
Sbjct: 141 AAPSANVSGRPSPTDAETVWRDLRGRIEMILDGGPVSV--GIESTVIDVSEE 190
>gi|423608331|ref|ZP_17584223.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD102]
gi|401238340|gb|EJR44781.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD102]
Length = 346
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEQLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|408789822|ref|ZP_11201463.1| YrdC, Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Lactobacillus florum 2F]
gi|408520844|gb|EKK20866.1| YrdC, Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Lactobacillus florum 2F]
Length = 339
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G +VA PT+T+YGL DATN+ A+ +Y+ K R + PL + V+++ + ++A
Sbjct: 14 AAAQLRAGELVAFPTETVYGLGADATNTAAVKKVYQAKGRPSDNPLIVHVADVETVTQYA 73
Query: 100 DTHTVSF-ELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T T + +L+ + PGP+TI+ + + L + ++ A R P L+K
Sbjct: 74 ATLTPTVKKLMDQFWPGPLTIILKLKPQALAEVVTGGLSTAAFRNPRQPLTNALIKAAGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ ++D G P G ST++D+S + +
Sbjct: 134 PLVGPSANTSGKPSPTTAAHVYHDLHGKIAGILDAG----PTEVGVESTVLDMSAKTP-T 188
Query: 215 IVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
I+R G L ++L + LV K P
Sbjct: 189 ILRPGAVTRADLLPLLGEVLEQQPLVGKTEIP 220
>gi|433460008|ref|ZP_20417644.1| tRNA threonylcarbamoyladenosine biosynthesis protein [Halobacillus
sp. BAB-2008]
gi|432192124|gb|ELK49037.1| tRNA threonylcarbamoyladenosine biosynthesis protein [Halobacillus
sp. BAB-2008]
Length = 344
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 17/209 (8%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
VTD +A AA+ L+ G VVA PT+T+YGL DAT A+ +++ K R + PL + V+
Sbjct: 14 VTD-EAIEEAARLLQSGEVVAFPTETVYGLGADATKEAAVQRIFDAKGRPSDNPLIVHVA 72
Query: 91 E-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIP 143
+ +++IP V+ L+ PGP+T++ + + ++ + +R+P
Sbjct: 73 DRAQVKGLVSEIPP------VAERLMDAFWPGPLTLIMKSNGTAADNVTAGLSSIGIRMP 126
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGS 202
DH L+K PLA SAN S PS TL + Q L +++ +IDGG S
Sbjct: 127 DHPVAASLIKASRLPLAAPSANRSGRPSPTLAGHVRQDLDGRIAGIIDGGATGV--GVES 184
Query: 203 TIVDLSEENVYSIVRKGVCYDKILKILHK 231
T+VD + E + G+ + + +IL +
Sbjct: 185 TVVDCTTEVPIILRPGGITKEDLERILSE 213
>gi|167038488|ref|YP_001666066.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116883|ref|YP_004187042.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166857322|gb|ABY95730.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929974|gb|ADV80659.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 354
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 120/215 (55%), Gaps = 21/215 (9%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M IV+V +P+ L+ AA+ +K+G +VA PT+T+YG+ ++ N +AI ++ K R
Sbjct: 1 MTKIVRVNKNNPEIELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRP 60
Query: 81 VNKPLAICVSE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNP 133
+ PL + ++E + ++P+ A T L+ + PGP+T++F +S+ +
Sbjct: 61 QDNPLIVHIAELEQIYDLVKEVPQKAKT------LMKKFWPGPLTLIFKKSQKVPYVNTA 114
Query: 134 NVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ VA+R+P + L+K + P++ SAN S +PS T + + L+ ++ V+IDGG
Sbjct: 115 GMDTVAIRMPSNTIAHLLIKRAEVPISAPSANVSGKPSPTDASHVIEDLYGKVDVIIDGG 174
Query: 193 IISNPERFGSTIVDLSEENVYSIVRKGVCYDKILK 227
ST++DL+E+ V I+R G ++L+
Sbjct: 175 KCDV--GVESTVLDLTEK-VPVILRPGAVTLEMLR 206
>gi|333987983|ref|YP_004520590.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. SWAN-1]
gi|333826127|gb|AEG18789.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. SWAN-1]
Length = 204
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 10/184 (5%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LA + L+ G +V PTDT+YG+ + + KA+ +Y KKR +KP++IC+S I DI +
Sbjct: 18 LAKKILRNGGIVVYPTDTVYGIGANIFDEKAVQKVYFAKKRSRSKPISICLSRIEDIKEV 77
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + + ++LPGP T++ + E ++ L K+ VRIPD + ++L + D P
Sbjct: 78 ACIDRDTERIARKILPGPFTLILKKKEGVSPLLTAGEDKIGVRIPDSRICKELSE--DFP 135
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVY--SI 215
+ TSAN S + ++L + +++D G+ + ST++D++ V+ I
Sbjct: 136 ITTTSANISGMKVPESADGVVKQLGDSVDLILDAGVFEHA--VPSTVIDMT---VFPLKI 190
Query: 216 VRKG 219
+RKG
Sbjct: 191 LRKG 194
>gi|384183190|ref|YP_005568952.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324329274|gb|ADY24534.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 346
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEQLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|284161228|ref|YP_003399851.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM
5631]
gi|284011225|gb|ADB57178.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM
5631]
Length = 289
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 105/191 (54%), Gaps = 8/191 (4%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M I KV +P ++L A +K+G +VA PT+T+YGL +A + A+ L+E+K R
Sbjct: 1 MTKIYKVDPRNPDESVLREVAHMIKEGKLVAYPTETVYGLGTNALDENAVKRLFEVKGRP 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAV 140
KP+++ VS++ + + A+ + + +L+ + PGP+TI+ + + + + K+ +
Sbjct: 61 -KKPVSVVVSDLDHVERIAEPNETALKLMEKFFPGPITIIVKKKKVIPPIVTAGTDKIGI 119
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPER 199
R+PD+K +L + P+ TSAN S +PS T + ++ ++D G P +
Sbjct: 120 RLPDYKIPLKLAEFSGVPVTSTSANVSGKPSPTKPEHIMVDFMGKIDAILDAG--ETPLK 177
Query: 200 FGSTIVDLSEE 210
ST++D + E
Sbjct: 178 IESTVIDTTTE 188
>gi|78044541|ref|YP_361354.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996656|gb|ABB15555.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 342
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +KKG +VA PT+T+YGL DA N A+ ++ K R + PL + ++ DI + A
Sbjct: 21 AAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARHEDIYRVA 80
Query: 100 DTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
V + L+ + PGP+TIV R E L ++ + VAVR+PDH L++ +P
Sbjct: 81 ARVDVRAQKLMEKFWPGPLTIVLPRREDLPAVVSAGLPTVAVRLPDHPVAVMLIEAAQTP 140
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S PS L + VV+ GG R G ST++DL+
Sbjct: 141 IAAPSANRSGRPSPTSYEHVLDDLSGIIPVVLAGGNC----RVGVESTVLDLT 189
>gi|395765613|ref|ZP_10446207.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella sp. DB5-6]
gi|395411167|gb|EJF77701.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella sp. DB5-6]
Length = 320
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VALP++T+YGLA DATN +A++ ++ K+R PL VS I+ ++
Sbjct: 14 AVALLKQGKLVALPSETVYGLAGDATNGRAVSSIFFTKRRPQFNPLIAHVSSISMAERYV 73
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +S L+ PGP+T+V + N+ + +AVR PD F ++++
Sbjct: 74 EIDFLSRRLMEVFWPGPLTLVLSLKTQHNIHPLTTSGLNTLAVRFPDSHFA-EVVQCFGR 132
Query: 158 PLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S S F L + +++DGG P + G STI+ + E++Y
Sbjct: 133 PLAAPSANRSGCLSPTSAEAVFASLGESVPLILDGG----PSKIGLESTIIKVCNESIYL 188
Query: 215 IVRKGVCYDKILKILHK 231
+ G+ ++I K+ K
Sbjct: 189 LRPGGLPAEEIEKVAEK 205
>gi|427439445|ref|ZP_18924100.1| translation factor SUA5 [Pediococcus lolii NGRI 0510Q]
gi|425788281|dbj|GAC44888.1| translation factor SUA5 [Pediococcus lolii NGRI 0510Q]
Length = 340
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL DATN A+ +Y+ K R + PL + V+ + ++A
Sbjct: 13 AAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVTGPAQVAEFA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ S +L+ PGP+TI+ H L+ + +T A R PD +L++ P
Sbjct: 73 EIDAQSKQLMDTFWPGPLTIILPIKPHALDPVVTGGLTTAAFRNPDTPLTLKLIEQAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS T + L +++ V+DGG + G ST++D+S V S+
Sbjct: 133 LVGPSANTSGKPSPTKPAHVMHDLDGKIAGVLDGGET----KIGVESTVLDMSGA-VPSV 187
Query: 216 VRKG-VCYDKILKILHK----YHLVEKNTFP 241
+R G V + + IL + +H V K+ P
Sbjct: 188 LRPGAVTPEDLTPILGEVQTDHHKVGKDEVP 218
>gi|386001526|ref|YP_005919825.1| Translation factor (SUA5 family) [Methanosaeta harundinacea 6Ac]
gi|357209582|gb|AET64202.1| Translation factor (SUA5 family) [Methanosaeta harundinacea 6Ac]
Length = 193
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L +G V PT+T+YG+ +A+ ++EIK R PL++ V+ + + A
Sbjct: 9 AAEVLARGGTVVYPTETVYGIGASVFIPRAVERVFEIKGRPRGMPLSVAVASFEMMGEIA 68
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
LL +LPGPVT + R L + V +R PDH +L+ L P+
Sbjct: 69 RIDDGDLPLLRRVLPGPVTFLVERGPKLPDLVTAGSELVGIRFPDHPAALELIAL-SGPI 127
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
TSAN S P + E ++ + +V+DGG R+G ST+VDL+E V +
Sbjct: 128 TSTSANLSGLPPPASLAELDGEIRKNVDLVLDGGR----SRYGLPSTLVDLAERKV---I 180
Query: 217 RKGVCYDKILKIL 229
RKG +++ +L
Sbjct: 181 RKGAGMERLEGLL 193
>gi|418069588|ref|ZP_12706865.1| translation factor SUA5 [Pediococcus acidilactici MA18/5M]
gi|357536119|gb|EHJ20150.1| translation factor SUA5 [Pediococcus acidilactici MA18/5M]
Length = 340
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL DATN A+ +Y+ K R + PL + V+ + ++A
Sbjct: 13 AAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVTGPAQVAEFA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ S +L+ PGP+TI+ H L+ + +T A R PD +L++ P
Sbjct: 73 EIDAQSKQLMDTFWPGPLTIILPIKPHALDPVVTGGLTTAAFRNPDTPLTLKLIEQAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS T + L +++ V+DGG + G ST++D+S V S+
Sbjct: 133 LVGPSANTSGKPSPTKPAHVMHDLDGKIAGVLDGGET----KIGVESTVLDMSGA-VPSV 187
Query: 216 VRKG-VCYDKILKILHK----YHLVEKNTFP 241
+R G V + + IL + +H V K+ P
Sbjct: 188 LRPGAVTPEDLTPILGEVQTDHHKVGKDEVP 218
>gi|297569316|ref|YP_003690660.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925231|gb|ADH86041.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 221
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 5/183 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T YGLA D N +A++ L+ +K+R +KP+ V + + A
Sbjct: 19 AAAIIRRGGIVAFPTETYYGLAVDPFNREALSRLFALKRRAPDKPILCLVPDREHLFSLA 78
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D+ S+E L E PGP+T++F E + + L V VR+ H +L ++
Sbjct: 79 DSIPPSYEPLMEAFWPGPLTLIFTAREEVPVSLTGYSGTVGVRLSSHPVAARLAQIYGGA 138
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S P+ + E +L + ++DGG P GST+V + E + + R
Sbjct: 139 ITATSANFSGHPAAVNAAEVGAQLGPDVDYILDGG--ETPGGAGSTLVGVENEQLV-LRR 195
Query: 218 KGV 220
GV
Sbjct: 196 PGV 198
>gi|229000111|ref|ZP_04159681.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17]
gi|228759648|gb|EEM08624.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17]
Length = 343
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 20 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSKSQLKGIV 79
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP+ A+ L+ PGP+TI+ + E ++ ++ + V VR+PDH L+
Sbjct: 80 REIPEVAEV------LMKHFWPGPLTIILPKKEGISEKVTAGLDTVGVRMPDHPVALALI 133
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE- 190
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 191 VPTILRPG 198
>gi|166033062|ref|ZP_02235891.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC
27755]
gi|166027419|gb|EDR46176.1| Sua5/YciO/YrdC/YwlC family protein [Dorea formicigenerans ATCC
27755]
Length = 353
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VA PT+T+YGL DA N A +Y K R + PL + ++ + + K A
Sbjct: 25 AGDFLKEGGLVAFPTETVYGLGADALNKTASTKIYAAKGRPSDNPLIVHITNMGALDKIA 84
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D V++++ PGP+T++F ++E + E + VAVR+P + R L+
Sbjct: 85 DIIPEVAYKVADAYWPGPLTMIFQKTEEVPYETTGGLDTVAVRMPSDEIARALIDAGGGY 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S PS T + + L ++ +++DGG + G STI+D++
Sbjct: 145 IAAPSANTSGRPSPTKAEHVEEDLSGKIEMILDGGAVD----IGVESTILDMT 193
>gi|373469623|ref|ZP_09560804.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371764115|gb|EHO52539.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 361
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LAA +K G +VA PT+T+YGL DA +A +Y K R + PL + ++ + D+
Sbjct: 26 LAADIIKSGGLVAFPTETVYGLGADAFLEEAAKKIYAAKGRPSDNPLIVHIANVYDVENI 85
Query: 99 A-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A D + + L + PGP+TIV + + + + + VAVR+P + R L++
Sbjct: 86 AKDIPDIFYTLAKKYWPGPMTIVLKKRDIIPYATSGGLDTVAVRLPGNDIARALIEAAGV 145
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + + + ++ ++IDGG + G STI+DL+ ++ +
Sbjct: 146 PIAAPSANTSGRPSPTKASHVSEDMNGKIDMIIDGGAVG----IGVESTIIDLT-SDIPT 200
Query: 215 IVRKGVCYDKILK 227
++R G ++L+
Sbjct: 201 LLRPGAVTLEMLR 213
>gi|304385307|ref|ZP_07367652.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM
20284]
gi|304328514|gb|EFL95735.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM
20284]
Length = 340
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL DATN A+ +Y+ K R + PL + V+ + ++A
Sbjct: 13 AAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVTGPAQVAEFA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ S +L+ PGP+TI+ H L+ + +T A R PD +L++ P
Sbjct: 73 EIDAQSKQLMDTFWPGPLTIILPIKPHALDPVVTGGLTTAAFRNPDTPLTLKLIEQAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS T + L +++ V+DGG + G ST++D+S V S+
Sbjct: 133 LVGPSANTSGKPSPTKPAHVMHDLNGKIAGVLDGGET----KIGVESTVLDMSGA-VPSV 187
Query: 216 VRKG-VCYDKILKILHK----YHLVEKNTFP 241
+R G V + + IL + +H V K+ P
Sbjct: 188 LRPGAVTPEDLTPILGEVQTDHHKVGKDEVP 218
>gi|83941398|ref|ZP_00953860.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36]
gi|83847218|gb|EAP85093.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36]
Length = 314
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
DP AA L++G +VALPT+T+YGL DA N A+ +YE K R PL I V++
Sbjct: 7 ADPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPLIIHVAD 66
Query: 92 ITDI---PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHK 146
+ +W+DT + L + PGP+T+V ++ L + + V +R+P H
Sbjct: 67 VDQARRYGRWSDTAEI---LASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVPAHP 123
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
R +L+ + P+A SAN S + S T + L +++ V+D G
Sbjct: 124 TARAILRALGGPVAAPSANPSGKISATTAQHVLSGLGGRIAAVVDDG 170
>gi|153802309|ref|ZP_01956895.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|124122134|gb|EAY40877.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 328
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ LK+G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA
Sbjct: 25 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 84
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+++L PGP+T++ +++ ++ + + V +R+P H L +LK
Sbjct: 85 TAIAPEAYQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLA 144
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S + L +L+ V+DGG + STIVDL+ + + ++R
Sbjct: 145 VAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLDGGECQH--GLESTIVDLTSKP-FRVLR 201
Query: 218 KG 219
G
Sbjct: 202 AG 203
>gi|110669557|ref|YP_659368.1| DNA binding protein; translation factor [Haloquadratum walsbyi DSM
16790]
gi|109627304|emb|CAJ53794.1| tRNA threonylcarbamoyladenosine biosynthesis protein YrdC
[Haloquadratum walsbyi DSM 16790]
Length = 235
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 8/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +K G +V PT+T+YGL DA N AI +++ K R + PL++ V ++ + +
Sbjct: 38 AVRAIKSGELVVYPTETVYGLGVDALNPDAIKRVFDTKGRTYDNPLSLAVESVSAVARHT 97
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL-KLMDSP 158
+ + + + LPGPVT++ S + L +V +RIPDH LL + +P
Sbjct: 98 NPSERAMQFIKAFLPGPVTVIVECSTAVPDILTAGRDRVGIRIPDHHVALSLLERAAPTP 157
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN+S S + N Q + ++VV++ G + E ST+VD + ++ R
Sbjct: 158 ITATSANQSGTGSIVDTNMLAQSIQQNVAVVLEAGETTGTE---STVVDPTRNVIH---R 211
Query: 218 KGVCYDKILKIL 229
+G D ++ L
Sbjct: 212 RGAMADAVMAWL 223
>gi|154482619|ref|ZP_02025067.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC
27560]
gi|149736519|gb|EDM52405.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium ventriosum ATCC
27560]
Length = 359
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 115/214 (53%), Gaps = 11/214 (5%)
Query: 24 KMCSIVKVT-----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKK 78
KM +I+K T D A + +++G +VA PT+T+YGL DA N +A +Y K
Sbjct: 4 KMKTIIKKTSVDNIDMDTINQAGEIIRQGGLVAFPTETVYGLGADALNEEAAAKIYAAKG 63
Query: 79 RDVNKPLAICVSEITDI-PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTK 137
R + PL ++++ + P + V+ +L+ PGP+T++FN+S + +
Sbjct: 64 RPSDNPLIAHIADLEMLKPLVEEIPPVAEKLMDAFWPGPMTLIFNKSNLVPKGTTGGLDT 123
Query: 138 VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISN 196
VAVR P+H + L+K +A SAN S +PS TL + + ++ ++IDGG++
Sbjct: 124 VAVRYPNHPIAQALIKAAGVSIAAPSANLSGKPSPTLGEHVIDDMDGRIDMIIDGGMVGM 183
Query: 197 PERFGSTIVDLSEENVYSIVRKG-VCYDKILKIL 229
STI+D++ N I+R G + Y+ + +I+
Sbjct: 184 --GLESTIIDVT-VNPPMILRPGFITYEMVKEIV 214
>gi|357039188|ref|ZP_09100983.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum gibsoniae DSM
7213]
gi|355358652|gb|EHG06418.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum gibsoniae DSM
7213]
Length = 358
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 28 IVKVTDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPL 85
+V P A+L+ A L++G +VA PT+T+YGL +A +++A+ +Y K R + PL
Sbjct: 12 VVDPVQPDASLIQQAGAVLREGGLVAFPTETVYGLGANALDARAVAGIYLAKGRPADNPL 71
Query: 86 AICVSEITDIPKWADTHTVSFELL-AELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPD 144
+ + + ++ D LL A PGP+T+V E+ + VA R+P
Sbjct: 72 IVHIESHRVLTRYIDELPPVVSLLAARFWPGPLTMVLRGGRSFPPEVTAGLDTVAFRVPA 131
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG-- 201
H L++ P+A SAN S PS T + L ++++V+DGG P G
Sbjct: 132 HPVALALIRAAGVPVAAPSANASGRPSPTTAAHVLDDLSGKIALVLDGG----PSGLGVE 187
Query: 202 STIVDLSEENVYSIVRKGVCYDKILK 227
ST++DLS + I+R G + L+
Sbjct: 188 STVLDLSGDQPV-ILRPGGAIQRDLE 212
>gi|239624950|ref|ZP_04667981.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521336|gb|EEQ61202.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 380
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 13/194 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI---CVSEITDIP 96
AA LK G +VA PT+T+YGL +A + A +Y K R + PL C +E+ P
Sbjct: 49 AAAVLKGGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHISCAAELA--P 106
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ +L+ PGP+T++F +S + + VAVR+PD +L+ L
Sbjct: 107 LVREIPEAGRKLMEAFWPGPLTMIFPKSSKVPYGTTGGLDTVAVRMPDDPVASRLIALAG 166
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
P+A SAN S PS T + +Q + ++ ++IDGG P G STIVD+S V
Sbjct: 167 VPVAAPSANTSGRPSPTTADHVWQDMNGRIDMIIDGG----PVGIGVESTIVDVSSP-VP 221
Query: 214 SIVRKGVCYDKILK 227
S++R G ++L+
Sbjct: 222 SVLRPGAITMEMLR 235
>gi|404406401|ref|ZP_10997985.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. JC136]
Length = 193
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Query: 30 KVTD-PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAI 87
K TD K A A + ++ G ++ PTDT++GL CDATN+ A+ +Y +K+ + K L +
Sbjct: 3 KETDMQKEADEAVRVMRGGGIILYPTDTVWGLGCDATNAAAVERIYRLKRSENKKSMLVL 62
Query: 88 CVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
C S + V+FE++ EL P+T + + + L P + VRIPDH+F
Sbjct: 63 CASADMTVRYVNKAPGVAFEVM-ELATSPLTAILPGAAGVAENLIPEEGTLGVRIPDHEF 121
Query: 148 LRQLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVD 206
R++L + P+ TSAN S E + + + + K + + V++ P R S+I+
Sbjct: 122 CRRMLAGLKKPIVSTSANISGEATPVGLQDVAKEIVDGVDFVVNPRFEGKPTRKASSIIA 181
Query: 207 LSEENVYSIVRK 218
E I+R+
Sbjct: 182 FGEGGEVKIIRE 193
>gi|332880171|ref|ZP_08447853.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357045779|ref|ZP_09107411.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella clara YIT 11840]
gi|332681930|gb|EGJ54845.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355531302|gb|EHH00703.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella clara YIT 11840]
Length = 189
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 100/181 (55%), Gaps = 3/181 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A + +++G V+ PTDT++G+ CDATN +A+ +Y+IKKRD +K L V + ++
Sbjct: 10 AVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVDSDHRLQRYV 69
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+D V+++L+ E P+TI+F+++++L L V +R+ +F RQL
Sbjct: 70 SDVPNVAWDLI-EYATRPLTIIFDKAKNLAPNLLAEDGSVGIRVTREEFSRQLCYRFQKA 128
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S EPS C ++ ++ + + ++ + S+I+ L + +I+R
Sbjct: 129 VVSTSANVSGEPSPACFDDISDEIKNAVDYIVQSRRKEKTKAVPSSIIKLGSDGEVAIIR 188
Query: 218 K 218
K
Sbjct: 189 K 189
>gi|402301124|ref|ZP_10820529.1| sua5/yciO/yrdC/ywlC family protein [Bacillus alcalophilus ATCC
27647]
gi|401723760|gb|EJS97193.1| sua5/yciO/yrdC/ywlC family protein [Bacillus alcalophilus ATCC
27647]
Length = 346
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 4/192 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKW 98
AAQ LKKG V+A PT+T+YGL +A + AI ++ K R + PL + +++ + P
Sbjct: 27 AAQILKKGEVIAFPTETVYGLGANAYDESAIAKIFAAKGRPSDNPLIVHIAKREQMLPFI 86
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+T++F + + + + +AVR+PDH LL D P
Sbjct: 87 EGISEKAEQLINAFWPGPLTLIFKQKGEIASNVTAGLDTIAVRMPDHPVAAALLLTSDLP 146
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN S PS T + L +++ V+DGG S ST++D+S E
Sbjct: 147 LAAPSANLSGRPSPTTAGHVMLDLNKRIAGVVDGG--STGVGLESTVLDVSTEEPILYRP 204
Query: 218 KGVCYDKILKIL 229
GV ++I +++
Sbjct: 205 GGVTKEQIEEVI 216
>gi|310815072|ref|YP_003963036.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25]
gi|385232625|ref|YP_005793967.1| translation factor [Ketogulonicigenium vulgare WSH-001]
gi|308753807|gb|ADO41736.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25]
gi|343461536|gb|AEM39971.1| putative translation factor [Ketogulonicigenium vulgare WSH-001]
Length = 321
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VA+PT+T+YGLA DAT A+ +Y K R PL + V++I D+ +A S
Sbjct: 29 GQQVAVPTETVYGLAADATCDDAVAGIYAAKGRPSFNPLIVHVADIADVAAFAALSGESL 88
Query: 107 ELLAELLPGPVTIV--FNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
L PGP+T+V ++ + + VAVR+P H R L+K PLA+ SA
Sbjct: 89 ALAQAFWPGPLTLVLPLRADAPISKLVTAGLETVAVRLPAHPVARALIKAAGVPLAMPSA 148
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKGVC 221
N S S T + L +++ V+DGG P G STIV + + GV
Sbjct: 149 NPSGRISPTAAQHVLDGLAGRIAAVVDGG----PSGVGVESTIVVAGRGDAIVLRAGGVT 204
Query: 222 YDKILKIL 229
D+I +L
Sbjct: 205 PDEIAAVL 212
>gi|171186194|ref|YP_001795113.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum neutrophilum
V24Sta]
gi|170935406|gb|ACB40667.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum neutrophilum
V24Sta]
Length = 345
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 98/180 (54%), Gaps = 7/180 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP+ AA+ L++G +VA PT+T+YGL DA + +++ K R + PL + V +
Sbjct: 12 DPQVVKTAAEVLRRGGIVAAPTETVYGLFADARSDAGCARVFKAKGRPPDNPLIVHVDSV 71
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ A+ +E+L + PGP+T+V ++ + + VAVR P H ++
Sbjct: 72 EMATEVAEVPAELYEVLKRVWPGPLTLVLKSKGVVSRCVTAGLETVAVRAPAHPVPLAII 131
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
+ + +P+A SAN++ PS T + + L ++ VV+DGG P FG STI+D+++
Sbjct: 132 RELGAPIAGPSANKAGRPSPTAAEHVVEDLGGEVDVVVDGG----PTFFGVESTIIDVTK 187
>gi|347536166|ref|YP_004843591.1| putative translation factor [Flavobacterium branchiophilum FL-15]
gi|345529324|emb|CCB69354.1| Putative translation factor [Flavobacterium branchiophilum FL-15]
Length = 206
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Query: 25 MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M ++K+ +P A + + L+ G ++ PTDT+YGL CD TNSKA+ + +IK
Sbjct: 1 MSELIKIYEDNPNEAAIQKVVKVLQNGGLIIYPTDTVYGLGCDITNSKALEKIAKIKGIK 60
Query: 81 VNK-PLA-IC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
+ K P + IC +S ++D + DT T F++L LPG T + + +L E T
Sbjct: 61 LEKAPFSFICHDLSNLSDYIRQIDTAT--FKILKRALPGAYTFILPGNNNLPKEFKKKKT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
V +R+PD+ RQ++K + +P+ TS + +E + F+K +++ +VIDGG
Sbjct: 119 -VGIRVPDNNIARQIVKTLGNPIVSTSIRDEDELIEYTTDPELIFEKWQNKVDLVIDGGY 177
Query: 194 ISNPERFGSTIVDLS 208
SN STIVDLS
Sbjct: 178 GSN---VASTIVDLS 189
>gi|317130767|ref|YP_004097049.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM
2522]
gi|315475715|gb|ADU32318.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM
2522]
Length = 350
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA L VVA PT+T+YGL +A + +AI +++ K R + PL + +S +
Sbjct: 27 AATQLASNEVVAFPTETVYGLGGNALSDQAIERIFKAKGRPSDNPLIVHISNKKQLQHYV 86
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
IP A +L+ PGP+TIV ++ L+ + ++ VAVR+PDH L+
Sbjct: 87 KHIPNSA------RKLIDAFWPGPLTIVLEHNKKLSTRVTAQLSTVAVRMPDHPVALALI 140
Query: 153 KLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + PLA SAN S +PS + +K L ++S +IDGG ST+VD + E
Sbjct: 141 EAANVPLAAPSANTSGKPSPTTADHVRKDLAGKISTIIDGGTTG--VGVESTVVDCTSET 198
Query: 212 VYSIVRKGVCYDKILKIL 229
V + G+ + + +I+
Sbjct: 199 VMLLRPGGISKEALEEIV 216
>gi|296109437|ref|YP_003616386.1| Sua5/YciO/YrdC/YwlC family protein [methanocaldococcus infernus ME]
gi|295434251|gb|ADG13422.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME]
Length = 313
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 114/200 (57%), Gaps = 3/200 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++KG +VA PT+T+YGL DA N +A+ ++E+K+R + P+ + +S+ D+ K A
Sbjct: 13 AAEVIRKGGLVAFPTETVYGLGADALNKEAVAKIFEVKQRPLIDPVIVHISKFEDLEKLA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++++L PGP+T+V + E + + + VA+R+P H +L++ + +
Sbjct: 73 YPTELAYKLAKAFWPGPLTMVLPKKEVVPSIVTAGLDFVAIRMPAHPVALKLIEESKTFI 132
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
A SAN ++ S T + +++L ++ +++DGG STI+DL+ E +
Sbjct: 133 AAPSANLFSKLSPTRAEHVYEQLGDKVDIILDGGKCDV--GVESTIIDLTTEPPTILRLG 190
Query: 219 GVCYDKILKILHKYHLVEKN 238
G+ + I K++ + + ++N
Sbjct: 191 GLDVEAIEKVIGEVKITKEN 210
>gi|443630032|ref|ZP_21114331.1| putative Sua5/YciO/YrdC/YwlC protein [Streptomyces
viridochromogenes Tue57]
gi|443336463|gb|ELS50806.1| putative Sua5/YciO/YrdC/YwlC protein [Streptomyces
viridochromogenes Tue57]
Length = 324
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L G +VA PT+T+YGL DA +S A+ ++++K R + PL + + + + W
Sbjct: 11 AAGVLGAGGLVAFPTETVYGLGADAQDSAAVARVFQVKGRPPSHPLIVHIGGVEHLGDWV 70
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + LL E PGP+T+V R + LE + VAVR+P H LL
Sbjct: 71 EDVPATARLLGERFWPGPLTLVLRRGRRVPLEATGGLETVAVRVPGHPVALALLSAFGGG 130
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S + + +L + V+DGG P G STIVD + + S+
Sbjct: 131 VAAPSANRFGSVSPTTADHVRAELGDAVDYVLDGG----PCEVGVESTIVDAT-GDFPSV 185
Query: 216 VRKG 219
+R G
Sbjct: 186 LRPG 189
>gi|366090539|ref|ZP_09456905.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidipiscis KCTC
13900]
Length = 340
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 9/207 (4%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
I K+ P AA+ +K G ++A PT+T+YGL DATN +A+ +Y K R + PL +
Sbjct: 3 ITKIYSPAETKKAAEEIKLGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPLIV 62
Query: 88 CVSEITDIPKW-ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDH 145
VS ++ AD +L+ PGP+T+VF + L+ + ++ A R+P++
Sbjct: 63 TVSSPEMAAEYIADYGQYGEKLIKAFWPGPLTLVFKIKPGSLSPVVTGGLSTAAFRMPEN 122
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--S 202
+ R+++ P+ SAN S +PS T + F + +++ ++D G P G S
Sbjct: 123 ETTRKMIAQAGVPIVGPSANSSGKPSPTTAQHVFHDMEGKIAGILDDG----PTAVGVES 178
Query: 203 TIVDLSEENVYSIVRKGVCYDKILKIL 229
TIVDLS + G+ ++I K +
Sbjct: 179 TIVDLSTSEPAILRPGGIISEQIEKTI 205
>gi|332800045|ref|YP_004461544.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter acetatoxydans
Re1]
gi|438003341|ref|YP_007273084.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Tepidanaerobacter
acetatoxydans Re1]
gi|332697780|gb|AEE92237.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter acetatoxydans
Re1]
gi|432180135|emb|CCP27108.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Tepidanaerobacter
acetatoxydans Re1]
Length = 347
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +K G +VA PT+T+YGL +A + +Y K R + PL + + ++ + +
Sbjct: 22 AAEIIKTGGLVAFPTETVYGLGGNALDEHVAKKIYAAKGRPQDNPLIVHIHSLSQLDELV 81
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T + L+ + PGP+TI+F++ + + + VA+R+P H +L+K P
Sbjct: 82 KEIPTRAAVLMDKFWPGPLTIIFHKKDIIPYSTTGGLDTVAIRMPAHSVALELIKESGVP 141
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS C + + L+ ++ +++DGG P G ST++DLSE+ V I
Sbjct: 142 IAAPSANISGRPSPACAEDVAEDLFGKIEMILDGG----PTSVGVESTVLDLSEK-VPII 196
Query: 216 VRKG 219
+R G
Sbjct: 197 LRPG 200
>gi|255532909|ref|YP_003093281.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
gi|255345893|gb|ACU05219.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
Length = 206
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 15/195 (7%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINI---LYEIKKRDVNKPLAIC- 88
+PKA LKKG ++ PTDT+YGL CD TN KAI L IK N IC
Sbjct: 11 NPKAIEQIVDVLKKGGLIIYPTDTVYGLGCDITNQKAIEKICRLRGIKPEKANFSF-ICS 69
Query: 89 -VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
+ I+D K DT T F +L + LPGP T + N + ++ L+ N V +R+PD+
Sbjct: 70 DLRHISDFIKPIDTAT--FRVLKKALPGPFTFILNANNNVPKLLSSNKKTVGIRVPDNDI 127
Query: 148 LRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTI 204
R++++ + +P+ TS + +E + +K + + +VIDGG N ST+
Sbjct: 128 AREIVRQLGNPILSTSIRDDDEVIEYSTDPELIHEKYENTVDMVIDGGFGDNE---ASTV 184
Query: 205 VDLSEENVYSIVRKG 219
VD + + + I+R+G
Sbjct: 185 VDCTSGD-FEIIREG 198
>gi|325002822|ref|ZP_08123934.1| translation factor SUA5 [Pseudonocardia sp. P1]
Length = 220
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 5/194 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +V LPTDT+YG+ CDA + A+ L K+R + P+ + V T I
Sbjct: 25 AARAVRSGELVVLPTDTVYGIGCDAFSGTAVRNLLSAKRRGPDMPVGVLVGSWTTIDGLV 84
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ S L E PG V++V + L +L V +R+P H +LL+ + P
Sbjct: 85 TSVPPSARALIEAFWPGEVSLVLEHAPSLAWDLGSTRGTVMLRMPLHPVALELLREV-GP 143
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A++SAN S P + E +L S + V +DGG +P STIVDL+ +
Sbjct: 144 MAVSSANTSGNPPASTVTEAITQLASSVQVYLDGGPSGDP--VASTIVDLTGVRPRLLRE 201
Query: 218 KGVCYDKILKILHK 231
GV +++ +++ +
Sbjct: 202 GGVSAEQVAEVVGQ 215
>gi|138896951|ref|YP_001127404.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans
NG80-2]
gi|134268464|gb|ABO68659.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans
NG80-2]
Length = 345
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G V+A PT+T+YGL DA N+ A+ ++ K R + PL + V+ + + A
Sbjct: 24 AAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASLAQVESIA 83
Query: 100 DT-HTVSFELLAELLPGPVTIVF-NRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ V+ L+ PGP+T+V R ++ + ++ VAVR+PDH L++
Sbjct: 84 ASIPPVAKTLMERFWPGPLTLVLPKRDGAVSERVTAGLSTVAVRMPDHPLALALIEASGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
LA SAN S PS T + L +++ VIDGG P G ST++D S E V +
Sbjct: 144 ALAAPSANRSGRPSPTTAAHVLADLNGRIAGVIDGG----PTGVGVESTVLDCSGE-VPT 198
Query: 215 IVRKG 219
I+R G
Sbjct: 199 ILRPG 203
>gi|427393452|ref|ZP_18887230.1| Sua5/YciO/YrdC/YwlC family protein [Alloiococcus otitis ATCC 51267]
gi|425730670|gb|EKU93504.1| Sua5/YciO/YrdC/YwlC family protein [Alloiococcus otitis ATCC 51267]
Length = 332
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G +VA PT+T+YGL DA N +A+ +Y+ K R + PL + + + + ++
Sbjct: 14 AVTLLEEGELVAFPTETVYGLGADAKNDQAVQKIYQAKGRPSDNPLIVHIYSVDQVYDFS 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT----KVAVRIPDHKFLRQLLKL 154
+ + +LL PGP+TI+ N H P VT + +R+P H R LLK+
Sbjct: 74 SRIPSRAQDLLNAFWPGPLTIILN---HDQETAAPTVTSGQDSIGIRMPSHPLARDLLKV 130
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
LA SAN S PS + +W LS I G + P G ST+VD + +
Sbjct: 131 SGLALAAPSANLSGRPSPTSADH---VWHDLSGRIAGVLDGGPTGLGLESTVVDFTNPDQ 187
Query: 213 YSIVRKG 219
+I+R G
Sbjct: 188 PAILRPG 194
>gi|326332909|ref|ZP_08199166.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
Broad-1]
gi|325949267|gb|EGD41350.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
Broad-1]
Length = 242
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 17/197 (8%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI-------TDIPKWA 99
G +V +PTDT+YG+A DA + A+ L K R P + +S + T IP WA
Sbjct: 27 GELVIVPTDTVYGVAADAFDKGAVAGLLAAKGRGRAMPPPVLISNVATLDALATRIPDWA 86
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
T L+ E PG +T+VF++ L +L VAVRIPD LR+++ + PL
Sbjct: 87 RT------LVEEFWPGALTVVFHQQPSLQWDLGEARQTVAVRIPDSDILRRIIDRV-GPL 139
Query: 160 ALTSANESNEPSTLCINEFQKLWSQL-SVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
A +SAN + P+ ++ ++ ++ +IDGG +P STIV + + +
Sbjct: 140 ATSSANRTTMPAATNADQADEMLGKMVRAIIDGG--ESPVGEASTIVSATGDEPKVLREG 197
Query: 219 GVCYDKILKILHKYHLV 235
+ D+I ++L K+ +
Sbjct: 198 AISIDRINELLAKHDVA 214
>gi|257880059|ref|ZP_05659712.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933]
gi|257891150|ref|ZP_05670803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410]
gi|257893964|ref|ZP_05673617.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408]
gi|260560328|ref|ZP_05832504.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68]
gi|257814287|gb|EEV43045.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933]
gi|257827510|gb|EEV54136.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410]
gi|257830343|gb|EEV56950.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408]
gi|260073673|gb|EEW61999.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68]
Length = 331
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 4 AAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 63
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A RIPD+K ++++L
Sbjct: 64 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRIPDNKKTLEVIELSGV 123
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 124 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 179
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 180 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 213
>gi|310659435|ref|YP_003937156.1| sua5/yciO/yrdC/ywlC family protein [[Clostridium] sticklandii]
gi|308826213|emb|CBH22251.1| sua5/yciO/yrdC/ywlC family protein [[Clostridium] sticklandii]
Length = 347
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 8/195 (4%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A LK G V PT+T+YGL +A + +A +YE K R + PL + +S+ D+ A
Sbjct: 26 ANLLKAGKTVVFPTETVYGLGANALDPEAAKKIYEAKGRPSDNPLIVHISKKEDVDFLAG 85
Query: 101 THTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ +LL E PGP+T++ ++S+ + +E + VA+R+P + R+L+ L P+
Sbjct: 86 NISQDSKLLMEDFWPGPLTLILDKSDSVPIETTGGLMTVAIRMPSNPIARKLIDLAGVPI 145
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
A SAN S PS I + L +L +D IIS G ST+VD++ + I+R
Sbjct: 146 AAPSANISGRPS---ITSSKYLVEELCERVDAIIISEDSEIGLESTVVDMT-ASTPVILR 201
Query: 218 KG-VCYDKILKILHK 231
G + +I KIL+K
Sbjct: 202 PGKIGKTEIEKILNK 216
>gi|357419477|ref|YP_004932469.1| Sua5/YciO/YrdC/YwlC family protein [Thermovirga lienii DSM 17291]
gi|355396943|gb|AER66372.1| Sua5/YciO/YrdC/YwlC family protein [Thermovirga lienii DSM 17291]
Length = 327
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+ +LL AA+ ++KG +VA PT+T+YGL +A + KA+ ++ K R + PL + VS
Sbjct: 12 NPQESLLEEAAEVIRKGGLVAFPTETVYGLGANALDEKAVLSIFRAKNRPADNPLIVHVS 71
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
D+ + A + ++ L+ PGP+T+V + + VAVR+PDH
Sbjct: 72 RTEDVDQLAHLNHIALRLMERFWPGPLTLVLPAKGRVPKVTTGGLDTVAVRMPDHPVALG 131
Query: 151 LLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDL 207
L++ P+A SAN S PS T + + + ++ VV+D G P G ST++ +
Sbjct: 132 LIEKSQVPIAAPSANLSGRPSPTDAESVMEDMEGRVEVVLDSG----PTEVGVESTVLYV 187
Query: 208 SEENVYSIVRKGVC 221
++ ++R G C
Sbjct: 188 KDKETV-LLRPGGC 200
>gi|385805013|ref|YP_005841413.1| tRNA threonylcarbamoyladenosine biosynthesis protein [Haloquadratum
walsbyi C23]
gi|339730505|emb|CCC41846.1| tRNA threonylcarbamoyladenosine biosynthesis protein YrdC
[Haloquadratum walsbyi C23]
Length = 235
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 8/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + +K G +V PT+T+YGL DA N AI +++ K R + PL++ V ++ + +
Sbjct: 38 AVRAIKSGELVVYPTETVYGLGVDALNPDAIKRVFDTKGRTYDNPLSLAVESVSAVARHT 97
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL-KLMDSP 158
+ + + + LPGPVT++ S + L +V +RIPDH LL + +P
Sbjct: 98 NPSERAMQFIKAFLPGPVTVIVECSTAVPDILTAGRGRVGIRIPDHHVALSLLERAAPTP 157
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN+S S + N Q + ++VV++ G + E ST+VD + ++ R
Sbjct: 158 ITATSANQSGTGSIVDTNMLAQSIQQNVAVVLEAGETTGTE---STVVDPTRNIIH---R 211
Query: 218 KGVCYDKILKIL 229
+G D ++ L
Sbjct: 212 RGAMADAVIAWL 223
>gi|384044292|ref|YP_005492309.1| translation factor [Bacillus megaterium WSH-002]
gi|345441983|gb|AEN87000.1| Putative translation factor (SUA5) [Bacillus megaterium WSH-002]
Length = 346
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 105/190 (55%), Gaps = 5/190 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ VVA PT+T+YGL DAT+ KA++ ++ K R + PL + + + + +
Sbjct: 24 AADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQLHTFV 83
Query: 100 DTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ E ++ PGP+T++ + + ++ ++ + +AVR+P H LLK +D P
Sbjct: 84 ESIPSKAEKVIDAFWPGPLTVILPKKDRVSDKVTAGLNSIAVRMPSHPVALALLKKVDLP 143
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S +PS TL + L ++S V+DGG + ST++D +EE + I+R
Sbjct: 144 IAAPSANLSGKPSPTLAHHVMNDLEGRISGVVDGG--ATGVGVESTVLDCTEE-IPIILR 200
Query: 218 KGVCYDKILK 227
G K L+
Sbjct: 201 PGGITQKELE 210
>gi|222478840|ref|YP_002565077.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC
49239]
gi|222451742|gb|ACM56007.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 199
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ + G +V PT+T+YGL DA + A+ ++++K R+ + PL++ V + ++
Sbjct: 11 AAEAVADGDLVVYPTETVYGLGGDALDPTAVERVFDLKGRERSNPLSLGVPSVDAALRYT 70
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ LPGPVT+V R + + L +V VR+PDH R LL+ PL
Sbjct: 71 KPTEFAVAFARAFLPGPVTVVVERGDPVPDALTAGSDRVGVRVPDHPIARDLLRET-GPL 129
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++VVID G E ST+VD + +I R+
Sbjct: 130 TATSANVSGRGSVTHPDDLDDRIREGVAVVIDDGETPGTE---STVVD---PDARTIHRR 183
Query: 219 GVCYDKI 225
G I
Sbjct: 184 GAMAGAI 190
>gi|228994044|ref|ZP_04153945.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM
12442]
gi|228765692|gb|EEM14345.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM
12442]
Length = 347
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSKSQLKGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
IP+ A+ L+ PGP+TI+ + E ++ ++ + V VR+PDH L+
Sbjct: 84 RGIPEVAEV------LMKHFWPGPLTIILPKKEGISEKVTAGLDTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + E
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSE- 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|447913562|ref|YP_007394974.1| YrdC, Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Enterococcus faecium NRRL
B-2354]
gi|445189271|gb|AGE30913.1| YrdC, Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Enterococcus faecium NRRL
B-2354]
Length = 341
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A RIPD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRIPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|390943764|ref|YP_006407525.1| Sua5/YciO/YrdC/YwlC family protein [Belliella baltica DSM 15883]
gi|390417192|gb|AFL84770.1| Sua5/YciO/YrdC/YwlC family protein [Belliella baltica DSM 15883]
Length = 209
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK-PLAICVSE 91
DPK + L+ G V+ PTDT+YG+ CD N +A+ + +IK K + +
Sbjct: 14 DPKKVQKIVEILRNGGVIIYPTDTVYGMGCDIHNQRAVERICQIKGIKAKKHNFSFICYD 73
Query: 92 ITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+++I ++ T F+++ + LPGP T + + + LN N + +R+PDH R
Sbjct: 74 LSNIAEYTRALSTPVFKMMKKALPGPFTFILEANNSVPKILNSNKKTIGIRVPDHTIPRL 133
Query: 151 LLKLMDSPLALTSANESN---EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
L+K + P+ TS + + E ST F+K + + VVIDGG +N GSTI+D
Sbjct: 134 LVKELGQPILTTSIRDEDDVIEYSTDPELIFEKYENLVDVVIDGGYGNN---VGSTILDC 190
Query: 208 SEENVYSIVRKGV 220
+ + + I+R+G+
Sbjct: 191 TNDEI-EIIREGL 202
>gi|256811084|ref|YP_003128453.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens
AG86]
gi|256794284|gb|ACV24953.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens
AG86]
Length = 207
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 19/179 (10%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++ TDTLYG++ +A + A+ +Y+IKKRD NKPL+ICV +I K+A + ++
Sbjct: 31 GKIIICGTDTLYGISANALDENAVKKVYKIKKRDFNKPLSICVKNKEEIEKYAYVNDLAK 90
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALTS 163
+++ E LPGP+TI+ + + P++ + +RIPD +R+L + PL TS
Sbjct: 91 KIIDEFLPGPLTIILKKKPII-----PDIVAKDYIGIRIPDEAIIRELSIV---PLTTTS 142
Query: 164 ANESNEPSTLCINEFQ-KLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSIVRKG 219
AN S E S + E ++ ++ V+D G S P STI+ + E+N +R+G
Sbjct: 143 ANISGEKSPTAVEEINPEILKKVDYVVDIGKCKYSKP----STIIKI-EDNKIIPIREG 196
>gi|217963355|ref|YP_002349033.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23]
gi|290892704|ref|ZP_06555696.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
J2-071]
gi|386009258|ref|YP_005927536.1| translation factor, SUA5 type [Listeria monocytogenes L99]
gi|386027871|ref|YP_005948647.1| putative translation initiation protein [Listeria monocytogenes M7]
gi|404408918|ref|YP_006691633.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2376]
gi|217332625|gb|ACK38419.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23]
gi|290557764|gb|EFD91286.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
J2-071]
gi|307572068|emb|CAR85247.1| translation factor, SUA5 type [Listeria monocytogenes L99]
gi|336024452|gb|AEH93589.1| putative translation initiation protein [Listeria monocytogenes M7]
gi|404243067|emb|CBY64467.1| translation factor, SUA5 type [Listeria monocytogenes SLCC2376]
Length = 345
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 5/203 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN AI +Y K R + PL + ++ + + +
Sbjct: 21 AAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIARLDQMNSFV 80
Query: 100 DTH-TVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ +
Sbjct: 81 ASYPPKAIQLMEKFWPGPLTVILPLKKDSLAANVSAGLSTVGVRMPEHPVSLALINAANV 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
P+A SAN S +PS T + + L +++ +IDGG ST++D S E +
Sbjct: 141 PVAAPSANRSGKPSPTTADHVIEDLDGKIAGIIDGGATG--VGLESTVIDCSLEMPIILR 198
Query: 217 RKGVCYDKILKILHKYHLVEKNT 239
G+ ++I +++ + NT
Sbjct: 199 PGGITKEQIEQVIGPVDISTNNT 221
>gi|167760279|ref|ZP_02432406.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704]
gi|167662162|gb|EDS06292.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium scindens ATCC
35704]
Length = 352
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L++G +VA PT+T+YGL DA N A +Y K R + PL I ++ + D+ K
Sbjct: 24 AGRILREGGLVAFPTETVYGLGADALNEHAAQKIYAAKGRPSDNPLIIHITNMDDLAKIT 83
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +++A+ PGP+T++F++S + + VAVR+P H+ R+++
Sbjct: 84 SFIPEAAKVIADKYWPGPLTMIFDKSGIVPYGTTGGLDTVAVRMPSHEIAREVIDAGGGY 143
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S PS T ++ + + ++ ++IDGG + G STI+D++
Sbjct: 144 IAAPSANTSGRPSPTTALHVEEDMTGKIDMIIDGGSVD----IGVESTILDMT 192
>gi|150015296|ref|YP_001307550.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB
8052]
gi|149901761|gb|ABR32594.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB
8052]
Length = 343
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE------IT 93
AA+C+K G V PT+T+YGL DA N +A+ +++ K R + PL I VS
Sbjct: 15 AAECIKNGGTVVFPTETVYGLGADALNEEAVEKIFKAKGRPQDNPLIIHVSSKKLDLYAK 74
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
+IPK AD EL+ PGP+TI+ ++ + + + N+ + +R+PD++ R+L++
Sbjct: 75 EIPKVAD------ELINRFWPGPLTIILSKKDIIPNVTSANLNSIGIRMPDNEVARKLIE 128
Query: 154 LMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVD 206
L + +A SAN S PS +FQ+ L +D + G STIVD
Sbjct: 129 LSQTTIAAPSANISGRPSP---TDFQRCIEDLDGKVDYILGGEQSDIGVESTIVD 180
>gi|229164273|ref|ZP_04292206.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803]
gi|228619213|gb|EEK76106.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803]
Length = 347
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V +R+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGIRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGG--ATGVGVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|257882294|ref|ZP_05661947.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502]
gi|293563063|ref|ZP_06677529.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162]
gi|293567647|ref|ZP_06678990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071]
gi|294623633|ref|ZP_06702471.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317]
gi|314937736|ref|ZP_07845058.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04]
gi|314942366|ref|ZP_07849213.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C]
gi|314947684|ref|ZP_07851093.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082]
gi|314952115|ref|ZP_07855134.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A]
gi|314992374|ref|ZP_07857806.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B]
gi|314997439|ref|ZP_07862386.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01]
gi|383329618|ref|YP_005355502.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Aus0004]
gi|406580986|ref|ZP_11056170.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus sp. GMD4E]
gi|406590500|ref|ZP_11064866.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus sp. GMD1E]
gi|410937441|ref|ZP_11369301.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus sp. GMD5E]
gi|415888825|ref|ZP_11549236.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4453]
gi|416133094|ref|ZP_11598013.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4452]
gi|424792600|ref|ZP_18218813.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium V689]
gi|424797757|ref|ZP_18223309.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium S447]
gi|424826276|ref|ZP_18251186.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R501]
gi|424857887|ref|ZP_18281971.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R499]
gi|424868546|ref|ZP_18292288.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R497]
gi|424950923|ref|ZP_18366064.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R496]
gi|424955291|ref|ZP_18370133.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R494]
gi|424958829|ref|ZP_18373454.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R446]
gi|424961279|ref|ZP_18375734.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1986]
gi|424964882|ref|ZP_18378944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1190]
gi|424967229|ref|ZP_18380937.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1140]
gi|424971657|ref|ZP_18385084.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1139]
gi|424973735|ref|ZP_18387000.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1137]
gi|424977249|ref|ZP_18390281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1123]
gi|424981370|ref|ZP_18394106.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV99]
gi|424984766|ref|ZP_18397284.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV69]
gi|424989530|ref|ZP_18401794.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV38]
gi|424989648|ref|ZP_18401906.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV26]
gi|424994673|ref|ZP_18406604.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV168]
gi|424999311|ref|ZP_18410938.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV165]
gi|425000579|ref|ZP_18412135.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV161]
gi|425005072|ref|ZP_18416350.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV102]
gi|425008651|ref|ZP_18419721.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV1]
gi|425011915|ref|ZP_18422772.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E422]
gi|425013493|ref|ZP_18424223.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E417]
gi|425017014|ref|ZP_18427550.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium C621]
gi|425020671|ref|ZP_18430966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium C497]
gi|425022561|ref|ZP_18432733.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium C1904]
gi|425032896|ref|ZP_18437905.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 515]
gi|425035042|ref|ZP_18439894.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 514]
gi|425038946|ref|ZP_18443524.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 513]
gi|425040705|ref|ZP_18445158.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 511]
gi|425049012|ref|ZP_18452888.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 509]
gi|425053306|ref|ZP_18456859.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 506]
gi|425059790|ref|ZP_18463109.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 503]
gi|427395618|ref|ZP_18888540.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus durans
FB129-CNAB-4]
gi|430832263|ref|ZP_19450309.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0333]
gi|430845056|ref|ZP_19462952.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1050]
gi|430847324|ref|ZP_19465163.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1133]
gi|430856566|ref|ZP_19474252.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1392]
gi|430860774|ref|ZP_19478369.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1573]
gi|430961977|ref|ZP_19487260.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1576]
gi|431012257|ref|ZP_19490048.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1578]
gi|431238572|ref|ZP_19503441.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1622]
gi|431260040|ref|ZP_19505546.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1623]
gi|431305274|ref|ZP_19508641.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1626]
gi|431548812|ref|ZP_19519284.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1731]
gi|431745265|ref|ZP_19534115.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2134]
gi|431749672|ref|ZP_19538409.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2297]
gi|431755606|ref|ZP_19544255.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2883]
gi|431768234|ref|ZP_19556673.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1321]
gi|431771419|ref|ZP_19559802.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1644]
gi|431774216|ref|ZP_19562528.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2369]
gi|431777338|ref|ZP_19565592.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2560]
gi|431779976|ref|ZP_19568165.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4389]
gi|431783055|ref|ZP_19571179.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E6012]
gi|431786516|ref|ZP_19574528.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E6045]
gi|257817952|gb|EEV45280.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502]
gi|291589582|gb|EFF21387.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071]
gi|291596959|gb|EFF28172.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317]
gi|291604977|gb|EFF34445.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162]
gi|313588448|gb|EFR67293.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01]
gi|313593099|gb|EFR71944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B]
gi|313595734|gb|EFR74579.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A]
gi|313598879|gb|EFR77724.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C]
gi|313642874|gb|EFS07454.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04]
gi|313645925|gb|EFS10505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082]
gi|364093112|gb|EHM35416.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4452]
gi|364094748|gb|EHM36872.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4453]
gi|378939312|gb|AFC64384.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Aus0004]
gi|402917460|gb|EJX38247.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium V689]
gi|402920306|gb|EJX40830.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium S447]
gi|402924434|gb|EJX44643.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R501]
gi|402927883|gb|EJX47807.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R499]
gi|402932155|gb|EJX51688.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R496]
gi|402934358|gb|EJX53714.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R494]
gi|402936942|gb|EJX56087.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R497]
gi|402938979|gb|EJX57941.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium R446]
gi|402944269|gb|EJX62696.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1986]
gi|402945469|gb|EJX63815.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1190]
gi|402954893|gb|EJX72475.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1140]
gi|402957991|gb|EJX75345.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1137]
gi|402958608|gb|EJX75915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1139]
gi|402963963|gb|EJX80800.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV99]
gi|402966660|gb|EJX83276.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium P1123]
gi|402967899|gb|EJX84412.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV69]
gi|402968644|gb|EJX85116.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV38]
gi|402979250|gb|EJX94926.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV165]
gi|402979476|gb|EJX95142.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV168]
gi|402981373|gb|EJX96907.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV26]
gi|402987716|gb|EJY02761.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV102]
gi|402988886|gb|EJY03857.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV161]
gi|402991939|gb|EJY06676.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium ERV1]
gi|402995207|gb|EJY09684.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E422]
gi|403000906|gb|EJY14990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E417]
gi|403005654|gb|EJY19344.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium C621]
gi|403008778|gb|EJY22269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium C497]
gi|403011724|gb|EJY25015.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 515]
gi|403012514|gb|EJY25734.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium C1904]
gi|403018028|gb|EJY30741.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 513]
gi|403018838|gb|EJY31491.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 514]
gi|403027973|gb|EJY39821.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 511]
gi|403029145|gb|EJY40915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 509]
gi|403030917|gb|EJY42570.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 506]
gi|403043260|gb|EJY54181.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 503]
gi|404453265|gb|EKA00341.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus sp. GMD4E]
gi|404469263|gb|EKA14079.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus sp. GMD1E]
gi|410734054|gb|EKQ75975.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus sp. GMD5E]
gi|425723607|gb|EKU86494.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus durans
FB129-CNAB-4]
gi|430479961|gb|ELA57155.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0333]
gi|430495890|gb|ELA72010.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1050]
gi|430537267|gb|ELA77611.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1133]
gi|430544326|gb|ELA84364.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1392]
gi|430551092|gb|ELA90861.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1573]
gi|430555887|gb|ELA95415.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1576]
gi|430559768|gb|ELA99092.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1578]
gi|430572273|gb|ELB11135.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1622]
gi|430576779|gb|ELB15404.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1623]
gi|430579481|gb|ELB17990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1626]
gi|430591120|gb|ELB29165.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1731]
gi|430610978|gb|ELB48104.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2134]
gi|430611259|gb|ELB48361.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2297]
gi|430616828|gb|ELB53723.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2883]
gi|430629309|gb|ELB65710.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1321]
gi|430633209|gb|ELB69381.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1644]
gi|430634618|gb|ELB70736.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2369]
gi|430639450|gb|ELB75323.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2560]
gi|430641057|gb|ELB76877.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4389]
gi|430645409|gb|ELB80924.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E6045]
gi|430646077|gb|ELB81572.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E6012]
Length = 341
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A RIPD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRIPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|167636681|ref|ZP_02394969.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442]
gi|254744456|ref|ZP_05202136.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Kruger
B]
gi|167527881|gb|EDR90703.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442]
Length = 346
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCT-STVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|430853721|ref|ZP_19471448.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1258]
gi|430540274|gb|ELA80484.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1258]
Length = 341
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKAGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A R+PD+K +++KL
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRMPDNKKTLEVIKLSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|423399833|ref|ZP_17377006.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG2X1-2]
gi|401656894|gb|EJS74407.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG2X1-2]
Length = 347
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|254977106|ref|ZP_05273578.1| hypothetical protein CdifQC_17418 [Clostridium difficile QCD-66c26]
gi|255094434|ref|ZP_05323912.1| hypothetical protein CdifC_17521 [Clostridium difficile CIP 107932]
gi|255102691|ref|ZP_05331668.1| hypothetical protein CdifQCD-6_17911 [Clostridium difficile
QCD-63q42]
gi|255308512|ref|ZP_05352683.1| hypothetical protein CdifA_18121 [Clostridium difficile ATCC 43255]
gi|255316186|ref|ZP_05357769.1| hypothetical protein CdifQCD-7_17609 [Clostridium difficile
QCD-76w55]
gi|255518847|ref|ZP_05386523.1| hypothetical protein CdifQCD-_17148 [Clostridium difficile
QCD-97b34]
gi|255652026|ref|ZP_05398928.1| hypothetical protein CdifQCD_17710 [Clostridium difficile
QCD-37x79]
gi|306521768|ref|ZP_07408115.1| hypothetical protein CdifQ_20080 [Clostridium difficile QCD-32g58]
gi|384362675|ref|YP_006200527.1| hypothetical protein CDBI1_17030 [Clostridium difficile BI1]
gi|400927553|ref|YP_001090002.2| RNA-binding protein [Clostridium difficile 630]
gi|328887821|emb|CAJ70385.2| putative RNA-binding protein [Clostridium difficile 630]
Length = 346
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+ A+ L++G V PT+T+YGL +A + A+ +YE K R + PL + + E ++
Sbjct: 20 IQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDL 79
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ E L PGP+TI+ N+ + + + + + VA+R+P + R ++K
Sbjct: 80 AKDISDKAKLVIEKLWPGPITIILNKKDIIPYKTSGGLDTVAIRMPSNVIARAIIKEAGI 139
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
P+A SAN S PS + + ++ +++ +DG ++ FG ST++DL+EE I
Sbjct: 140 PIAAPSANISGRPSP---TKAKHVYEEMNGRVDGIVLGGDSNFGLESTVLDLTEETPM-I 195
Query: 216 VRKGVCYDKILKIL 229
+R G ++L+ L
Sbjct: 196 LRPGSITKEVLEEL 209
>gi|253581044|ref|ZP_04858305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847707|gb|EES75676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 350
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 19/196 (9%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE- 91
D +A LK+G +VA PT+T+YGL DA N +A +Y K R + PL + ++E
Sbjct: 14 DMEAIRRGGDILKQGGLVAFPTETVYGLGGDALNPQASMKIYAAKGRPSDNPLIVHIAEF 73
Query: 92 ------ITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPD 144
+ ++P+ A ++LAE PGP+T++F +S+ + E + VAVR P
Sbjct: 74 DKLAPIVAEVPEKA-------KILAEKYWPGPLTMIFPKSDLVPQETTGGLDSVAVRFPS 126
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGST 203
+ ++L+K +A SAN S PS ++ L + ++IDGG + ST
Sbjct: 127 DRIAQELIKAAGGYVAAPSANTSGRPSPTTAQHVEEDLGEAIEMIIDGGQVGI--GLEST 184
Query: 204 IVDLSEENVYSIVRKG 219
IVD + E+V ++R G
Sbjct: 185 IVDFT-EDVPVVLRPG 199
>gi|257885491|ref|ZP_05665144.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501]
gi|257821347|gb|EEV48477.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501]
Length = 331
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 4 AAEALKAGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 63
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A R+PD+K +++KL
Sbjct: 64 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRMPDNKKTLEVIKLSGV 123
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 124 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 179
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 180 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 213
>gi|423479475|ref|ZP_17456190.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6X1-1]
gi|402425779|gb|EJV57925.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6X1-1]
Length = 347
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCT-SAVPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|42784497|ref|NP_981744.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987]
gi|42740429|gb|AAS44352.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987]
Length = 346
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|357054848|ref|ZP_09115927.1| hypothetical protein HMPREF9467_02899 [Clostridium clostridioforme
2_1_49FAA]
gi|355383785|gb|EHG30860.1| hypothetical protein HMPREF9467_02899 [Clostridium clostridioforme
2_1_49FAA]
Length = 363
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKW 98
AA L+ G +VA PT+T+YGL +A + A +Y K R + PL VS + ++ P
Sbjct: 22 AAGILRSGGLVAFPTETVYGLGGNALDEDAAGKIYAAKGRPSDNPLIAHVSCMEEVAPLV 81
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+ PGP+T++F +S+ + + VA+R+PD +L+ L P
Sbjct: 82 KEIPEAGRKLMEAFWPGPLTMIFPKSDKVPYGTTGGLDTVAIRMPDDPVANRLIALAGVP 141
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + +Q + ++ ++IDGG P G STIVD+S V ++
Sbjct: 142 VAAPSANTSGRPSPTTADHVWQDMNGRIEMIIDGG----PVGIGVESTIVDVSSA-VPAV 196
Query: 216 VRKGVCYDKILK 227
+R G ++L+
Sbjct: 197 LRPGAITMEMLE 208
>gi|260685001|ref|YP_003216286.1| hypothetical protein CD196_3272 [Clostridium difficile CD196]
gi|260688659|ref|YP_003219793.1| hypothetical protein CDR20291_3318 [Clostridium difficile R20291]
gi|423090581|ref|ZP_17078870.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile
70-100-2010]
gi|260211164|emb|CBA66618.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260214676|emb|CBE07311.1| conserved hypothetical protein [Clostridium difficile R20291]
gi|357556285|gb|EHJ37900.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile
70-100-2010]
Length = 353
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+ A+ L++G V PT+T+YGL +A + A+ +YE K R + PL + + E ++
Sbjct: 27 IQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDL 86
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ E L PGP+TI+ N+ + + + + + VA+R+P + R ++K
Sbjct: 87 AKDISDKAKLVIEKLWPGPITIILNKKDIIPYKTSGGLDTVAIRMPSNVIARAIIKEAGI 146
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
P+A SAN S PS + + ++ +++ +DG ++ FG ST++DL+EE I
Sbjct: 147 PIAAPSANISGRPSP---TKAKHVYEEMNGRVDGIVLGGDSNFGLESTVLDLTEETPM-I 202
Query: 216 VRKGVCYDKILKIL 229
+R G ++L+ L
Sbjct: 203 LRPGSITKEVLEEL 216
>gi|58617022|ref|YP_196221.1| hypothetical protein ERGA_CDS_02950 [Ehrlichia ruminantium str.
Gardel]
gi|58416634|emb|CAI27747.1| Conserved hypothetical protein (putative translation factor SUA5
family) [Ehrlichia ruminantium str. Gardel]
Length = 199
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 7/198 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK ++ PT+T+Y LA DA + + I +Y+IK R NKP+++ +S I I +++
Sbjct: 5 AVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIKQFS 64
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + ++ EL PGP+T + + L K+ +RIP+H +L D P+
Sbjct: 65 NLTEHTAYIIQELSPGPITFILPIHNYGKLPKQFFYNKIGIRIPNHPIALAILNNFDHPI 124
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TS N S + +++ + +S +ID + + ST++DL+ Y I+RK
Sbjct: 125 TATSVNISGQQDATSVDQISDNIKKNISFIIDNNRLVHGT--ASTVIDLTS---YKILRK 179
Query: 219 G-VCYDKILKILHKYHLV 235
G V KI +IL K +++
Sbjct: 180 GAVTKQKIQEILKKINII 197
>gi|423080811|ref|ZP_17069428.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile
002-P50-2011]
gi|423087212|ref|ZP_17075601.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile
050-P50-2011]
gi|357545150|gb|EHJ27130.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile
050-P50-2011]
gi|357552300|gb|EHJ34074.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile
002-P50-2011]
Length = 353
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+ A+ L++G V PT+T+YGL +A + A+ +YE K R + PL + + E ++
Sbjct: 27 IQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKKEVYDL 86
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ E L PGP+TI+ N+ + + + + + VA+R+P + R ++K
Sbjct: 87 AKNISDKAKLVIEKLWPGPITIILNKKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEAGI 146
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
P+A SAN S PS + + ++ +++ +DG ++ FG ST++DL+EE I
Sbjct: 147 PIAAPSANISGRPSP---TKAKHVYEEMNGRVDGIVLGGDSNFGLESTVLDLTEETPM-I 202
Query: 216 VRKGVCYDKILKIL 229
+R G ++L+ L
Sbjct: 203 LRPGSITKEVLEEL 216
>gi|402311891|ref|ZP_10830822.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Lachnospiraceae bacterium
ICM7]
gi|400371038|gb|EJP24017.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Lachnospiraceae bacterium
ICM7]
Length = 365
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 9/192 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +K G +VA PT+T+YGL +A +A +Y K R + PL + +S+ D+ A
Sbjct: 30 AALIIKNGGLVAFPTETVYGLGANALMPEAAKKIYAAKGRPSDNPLIVHISKTEDVKDIA 89
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D + + L + PGP+T+V + + + + VA+R+P+ R L+++ P
Sbjct: 90 NDIPELFYTLSNKFWPGPMTVVLKKKSIIPDATSGGLDTVAIRLPESNIARALIEVSGVP 149
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + F + S++ ++IDGG + G STIVDL+ EN ++
Sbjct: 150 IAAPSANTSGRPSPTKASHVFADMNSKIEMIIDGGEVG----IGVESTIVDLT-ENTPTL 204
Query: 216 VRKGVCYDKILK 227
+R G ++L+
Sbjct: 205 LRPGAITLEMLR 216
>gi|448467547|ref|ZP_21599559.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum kocurii JCM 14978]
gi|445812423|gb|EMA62417.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum kocurii JCM 14978]
Length = 201
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ + +G +V PT+T+YGL DA + A+ ++E+K R+ + PL++ V + ++
Sbjct: 11 AAEAVAEGGLVVYPTETVYGLGGDALDPAAVERVFELKGRERSNPLSLGVPSVDAALRYT 70
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT+V +R + + L +V +R+PDH R LL+ PL
Sbjct: 71 EPTEFAVAFARAFLPGPVTVVVDRGDMVPDALTGGRDRVGIRVPDHPIARDLLRET-GPL 129
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S ++ ++ ++ VID G E ST+VD V+ R+
Sbjct: 130 TATSANVSGCGSVTHPDDLDDRIREGVAAVIDDGETPGTE---STVVDPEARTVH---RR 183
Query: 219 GVCYDKI 225
G I
Sbjct: 184 GAMAGAI 190
>gi|357058787|ref|ZP_09119633.1| hypothetical protein HMPREF9334_01350 [Selenomonas infelix ATCC
43532]
gi|355373133|gb|EHG20454.1| hypothetical protein HMPREF9334_01350 [Selenomonas infelix ATCC
43532]
Length = 350
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 8/203 (3%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+ + T P AA+ ++ G +VA PT+T+YGL + ++ A +Y K R + PL +
Sbjct: 5 LFRPTSPTDFERAAETIRSGALVAFPTETVYGLGANGLDAAACARIYAAKGRPSDNPLIL 64
Query: 88 CVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
++++ + A D + LL PGP+T++ ++ + + + V VR PDH
Sbjct: 65 HIADLAMAHEVASDVPPTAAHLLTVFAPGPLTVILPKAARIPDIVTGGLPTVGVRCPDHD 124
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
R+L++ P+A SAN S PS T ++ + ++ +++DGG R G ST
Sbjct: 125 VARRLIRAAGVPIAAPSANTSGRPSPTSAAMVYEDMAGRIPLILDGGSC----RLGVEST 180
Query: 204 IVDLSEENVYSIVRKGVCYDKIL 226
IVD +EE +I+R G +++
Sbjct: 181 IVDCTEEGTVTILRPGAVTREMI 203
>gi|254994878|ref|ZP_05277068.1| hypothetical protein AmarM_01965 [Anaplasma marginale str.
Mississippi]
Length = 197
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+K +V PTDTLY LAC A ++ ++ LYEIK+R +KP+ I ++ + I K+A
Sbjct: 6 EALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIRKFASL 65
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ ++ L PGPVT V + +L V VRIPDH R +L+ P+A
Sbjct: 66 KDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFFRGTVGVRIPDHAMARTILEEFGGPVAA 125
Query: 162 TSANESNEPST 172
TSAN S P
Sbjct: 126 TSANLSGMPGA 136
>gi|222475032|ref|YP_002563447.1| hypothetical protein AMF_320 [Anaplasma marginale str. Florida]
gi|255003012|ref|ZP_05277976.1| hypothetical protein AmarPR_01750 [Anaplasma marginale str. Puerto
Rico]
gi|269958915|ref|YP_003328704.1| translation factor [Anaplasma centrale str. Israel]
gi|222419168|gb|ACM49191.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
gi|269848746|gb|ACZ49390.1| putative translation factor [Anaplasma centrale str. Israel]
Length = 197
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+K +V PTDTLY LAC A ++ ++ LYEIK+R +KP+ I ++ + I K+A
Sbjct: 6 EALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIRKFASL 65
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ ++ L PGPVT V + +L V VRIPDH R +L+ P+A
Sbjct: 66 KDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFFRGTVGVRIPDHAMARTILEEFGGPVAA 125
Query: 162 TSANESNEPST 172
TSAN S P
Sbjct: 126 TSANLSGMPGA 136
>gi|320157253|ref|YP_004189632.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
gi|319932565|gb|ADV87429.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
Length = 320
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G +VA+PT+T+YGLA DATN A+ ++ K R + PL + + + + WA
Sbjct: 17 AKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVHIGRVEQLTDWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ L PGPVT++ ++ H+ + + + +R+P H LL+
Sbjct: 77 IDIPEEAYTLAQAYWPGPVTLLLKKAPHVTPVVTGGLETIGIRMPAHDVFATLLQSSGMA 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S T + L +++ V+DGG ++ STIVDL+E+ + I+R
Sbjct: 137 VAAPSANPYKKLSPTSAKHVMNSLGGKIAAVLDGGDCAH--GLESTIVDLTEKP-FRILR 193
Query: 218 KG 219
G
Sbjct: 194 TG 195
>gi|326203240|ref|ZP_08193105.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM
2782]
gi|325986498|gb|EGD47329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM
2782]
Length = 354
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE---ITDIP 96
AA+ LK+G VA PT+T+YGL +A + A++ +++ K R + PL + +++ ++++
Sbjct: 21 AAEALKEGMTVAFPTETVYGLGANALDGAAVSKIFKAKGRPSDNPLIVHIADREKVSELT 80
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ V+ L+ +L PGP+T+V +S + E+ + VA+R+P H +L++L
Sbjct: 81 SFIPAKAVA--LMDKLWPGPLTLVMKKSSAIPREITAGLDTVAIRMPGHPVALELIRLAG 138
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
P+A SAN S +PS T + L ++ +++D G S+ ST++D+S
Sbjct: 139 IPVAAPSANVSGKPSPTTARHVLDDLEGKIEIIVDAG--SSSVGLESTVLDVS 189
>gi|270291031|ref|ZP_06197254.1| translation factor [Pediococcus acidilactici 7_4]
gi|270280427|gb|EFA26262.1| translation factor [Pediococcus acidilactici 7_4]
Length = 340
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +++G +VA PT+T+YGL DATN A+ +Y+ K R + PL + V+ + ++A
Sbjct: 13 AAAAIQRGDLVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVTGPAQVAEFA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ S +L+ PGP+TI+ H L+ + +T A R PD +L++ P
Sbjct: 73 EIDAQSKQLMDTFWPGPLTIILPIKLHALDPVVTGGLTTAAFRNPDTPLTLKLIEQAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
L SAN S +PS T + L +++ V+DGG + G ST++D+S V S+
Sbjct: 133 LVGPSANTSGKPSPTKPAHVMHDLDGKIAGVLDGGET----KIGVESTVLDMS-GTVPSV 187
Query: 216 VRKG-VCYDKILKILHK----YHLVEKNTFP 241
+R G V + + IL + +H V K+ P
Sbjct: 188 LRPGAVTPEDLTPILGEVQTDHHKVGKDEVP 218
>gi|229158887|ref|ZP_04286944.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342]
gi|228624498|gb|EEK81268.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342]
Length = 347
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|312137347|ref|YP_004004684.1| translation factor sua5 [Methanothermus fervidus DSM 2088]
gi|311225066|gb|ADP77922.1| translation factor SUA5 [Methanothermus fervidus DSM 2088]
Length = 196
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 33 DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+PK +L + L +G V+ PTDTLYGL +A + AI +Y IKKR +KP++ICV
Sbjct: 10 NPKTKVLNKVRRMLAEGKVIIYPTDTLYGLGANAFDEDAIKKVYSIKKRSFDKPISICVP 69
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+ I K A + E +++LLPGP TI+ + + + L KV +RIP K +
Sbjct: 70 NMRWIRKVAYLNDKQKEKISKLLPGPYTIILEKKDIIPDVLTAGKKKVGIRIPKSKISIE 129
Query: 151 LLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
L K + P+ TSAN S + + E K + + ID G + ST++D + +
Sbjct: 130 LAK--EFPITATSANISGRETPPTVKEIIKQLKNVDLAIDVGPLRGEP---STVIDFTTD 184
>gi|417644414|ref|ZP_12294404.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri VCU121]
gi|445059138|ref|YP_007384542.1| hypothetical protein A284_03885 [Staphylococcus warneri SG1]
gi|330684783|gb|EGG96476.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
VCU121]
gi|443425195|gb|AGC90098.1| hypothetical protein A284_03885 [Staphylococcus warneri SG1]
Length = 347
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VALPT+T+YGL DATN +A++ +YE K R + PL + + +++ + + D
Sbjct: 31 GGLVALPTETVYGLGADATNQEAVSQIYEAKGRPSDNPLIVHIHDMSQMNDFIDKVEPRV 90
Query: 107 ELLAE-LLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+ L E PGP++ + +S +L ++ + +AVR+P H R +L+ +D P+A SA
Sbjct: 91 QQLMETFWPGPISFILPLKSGYLCPKVTGGLNSIAVRMPSHPIGRGVLQQIDKPIAAPSA 150
Query: 165 NESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
N S PS F+ ++ L+ IDG I + G ST++D + + + I R G
Sbjct: 151 NISGRPSPTT---FEHVYQDLNGRIDGIINGDQSEEGLESTVLDCT-QYPFRIARPG 203
>gi|373951758|ref|ZP_09611718.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM
18603]
gi|373888358|gb|EHQ24255.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM
18603]
Length = 206
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 13/185 (7%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIK--KRDVNKPLAIC--VSEITDIPK 97
Q LK+G ++ PTDT+YGL CD TN KAI+ + +I+ K + IC +S I+D K
Sbjct: 20 QILKRGGLIIYPTDTVYGLGCDITNPKAIDAICKIRHIKPEKANFSFICYDLSHISDYIK 79
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D T + +L + LPGP T +FN + H+ L+ N V +R+PD+ R+++K + +
Sbjct: 80 PIDNAT--YRVLKKALPGPFTFIFNANSHVPKLLSSNKKTVGIRVPDNNIAREIVKALGN 137
Query: 158 PLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
P+ +S + +E + +K + +VIDGG N ST+VD + + +
Sbjct: 138 PILSSSIRDEDEIIEYSTDPELIHEKYEGLVDLVIDGGYGDN---VPSTVVDCTTGD-FE 193
Query: 215 IVRKG 219
I+R+G
Sbjct: 194 IIREG 198
>gi|319936647|ref|ZP_08011060.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1]
gi|319808204|gb|EFW04769.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1]
Length = 200
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFEL 108
VVA PT+T+YG+ + A++ L E K RD +K + + V++ DI K+A + ++
Sbjct: 22 VVAFPTETVYGVGVKFGSKIALDKLMEAKNRDYSKAITLMVADEKDIEKYAFVSDDAKKI 81
Query: 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESN 168
+ +PG +T+VF + + ++ + + +RIPD +++ LLK P+ +TSAN SN
Sbjct: 82 VQAFMPGMITLVFKKKDTVDPIMTNGKETIGIRIPDDQYVLTLLKKA-GPMLVTSANLSN 140
Query: 169 EPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
P+T E +L ++ +V+DG N ST+VD+S N I+R+G
Sbjct: 141 HPNTTSTKEVLNQLDGRIDLVVDGQTTDN---VASTVVDVS-RNEMKILREG 188
>gi|307270731|ref|ZP_07552022.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248]
gi|306513041|gb|EFM81682.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248]
Length = 340
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLSEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|228988550|ref|ZP_04148637.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|423633830|ref|ZP_17609483.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD156]
gi|228771167|gb|EEM19646.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|401282430|gb|EJR88330.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD156]
Length = 347
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ + + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|435855124|ref|YP_007316443.1| Sua5/YciO/YrdC/YwlC family protein [Halobacteroides halobius DSM
5150]
gi|433671535|gb|AGB42350.1| Sua5/YciO/YrdC/YwlC family protein [Halobacteroides halobius DSM
5150]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ L++G +VA PT+T+YGL +A + +A+ ++ K R + PL + ++ + +
Sbjct: 18 AAKLLQEGRLVAFPTETVYGLGANALDPQAVEKIFAAKGRPADNPLIVHIANQNKLEELI 77
Query: 99 -ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ E PGP+T+V ++ + + VAVR+P H +QL++
Sbjct: 78 SSELSKQAQKLIDEFWPGPLTLVLPKASKVPKITTGGLETVAVRMPKHPLAQQLIEEAQV 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN S PS T+ + L ++S V+DGG G ST++DLS + V +
Sbjct: 138 PLAAPSANLSGRPSPTIAQHVMTDLAGRISGVVDGGQTG----IGVESTVLDLS-QGVPT 192
Query: 215 IVR-KGVCYDKILKILHK 231
++R GV Y+++ + L +
Sbjct: 193 LLRPGGVTYEQLKETLKR 210
>gi|432337896|ref|ZP_19589060.1| hypothetical protein Rwratislav_21783 [Rhodococcus wratislaviensis
IFP 2016]
gi|430775425|gb|ELB90941.1| hypothetical protein Rwratislav_21783 [Rhodococcus wratislaviensis
IFP 2016]
Length = 236
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 15/186 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+ G +V PTDTLY + DA N +A++ L K+R +KP ++ V P+
Sbjct: 27 AGDALRSGRLVVFPTDTLYAVGSDAFNREALHALLSAKQRSGDKPASVLVGS----PESL 82
Query: 100 DTHTVSFELLAELL-----PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
D S L A L PG +++V + HL +L + VR+P H +LL+
Sbjct: 83 DDLVASVPLSAHQLIQAFWPGALSLVLQAAPHLTCDLGRTRGTIMVRMPLHPVALELLEA 142
Query: 155 MDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
P+A +SAN++ P + + K L + +SV +DGG+ + STIVDLS
Sbjct: 143 --GPIAQSSANQTGRPPATTVEQAPKYLGAAVSVYLDGGMTGD---LPSTIVDLSTSRQP 197
Query: 214 SIVRKG 219
+I+R+G
Sbjct: 198 AILREG 203
>gi|57239024|ref|YP_180160.1| hypothetical protein Erum2950 [Ehrlichia ruminantium str.
Welgevonden]
gi|58578965|ref|YP_197177.1| hypothetical protein ERWE_CDS_03010 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161103|emb|CAH58012.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58417591|emb|CAI26795.1| Conserved hypothetical protein (putative translation factor SUA5
family) [Ehrlichia ruminantium str. Welgevonden]
Length = 199
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 7/198 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK ++ PT+T+Y LA DA + + I +Y+IK R NKP+++ +S I I +++
Sbjct: 5 AVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIKQFS 64
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + ++ +L PGP+T + + L K+ +RIP+H +L D P+
Sbjct: 65 NLTEHTAYIIQQLSPGPITFILPIHNYGKLPKQFFYNKIGIRIPNHPIALAILNNFDHPI 124
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TS N S + + +++ + +S +ID + + ST++DL+ Y I+RK
Sbjct: 125 TATSVNISGQQDAISVDQISDNIKKNISFIIDNNRLVHGT--ASTVIDLTS---YKILRK 179
Query: 219 G-VCYDKILKILHKYHLV 235
G V KI +IL K +++
Sbjct: 180 GAVTKQKIQEILKKINII 197
>gi|418007785|ref|ZP_12647659.1| putative RNA-binding protein [Lactobacillus casei UW4]
gi|410548167|gb|EKQ22382.1| putative RNA-binding protein [Lactobacillus casei UW4]
Length = 333
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VA PT+T+YGL DATN A+ +Y K R + PL + V++ + ++A
Sbjct: 13 AVAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPTDNPLIVTVADADMVGQYA 72
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L+ PGP+TI+ N L++++ + A R PD+ R+L+ P
Sbjct: 73 AITPLAAKLMEAFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDNALTRKLIATAGVP 132
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ SAN S +PS T + L +++ V+D G P + G S I+DL+
Sbjct: 133 IVGPSANTSGKPSPTTADHVLHDLDGKIAGVLDDG----PTQVGVESAIIDLT 181
>gi|377556575|ref|ZP_09786275.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gastricus PS3]
gi|376168279|gb|EHS87067.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gastricus PS3]
Length = 338
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 120/222 (54%), Gaps = 15/222 (6%)
Query: 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
K+ P+ AA +++G +VA PT+T+YGL DATN +A+ +Y+ K R + PL + V
Sbjct: 4 KIFQPQQIAEAAHLIQQGQLVAFPTETVYGLGADATNPQAVRQVYQAKGRPSDNPLIVHV 63
Query: 90 SEITDIPKW-ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKF 147
S + ++ AD + +L+ PG +TI+ + + L+ + + VA R+PD++
Sbjct: 64 STPAMVAQYAADIPVKAQKLMTHFWPGSLTIILPIKPDVLDPVVTGGLQTVAFRLPDNQV 123
Query: 148 LRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STI 204
+++ P+ SAN S +PS T + + L +++ ++D G P + G ST+
Sbjct: 124 TLEIINQAGVPIVGPSANTSGKPSPTTAQHVYHDLKGKIAGIVDDG----PTQVGLESTV 179
Query: 205 VDLSEENVYSIVRKGVCYD-KILKILH----KYHLVEKNTFP 241
+DLS + +I+R GV + +I +++ +H V+ N P
Sbjct: 180 IDLSTDEP-AILRPGVVTEAEIEQVIGPLRVDHHRVKANETP 220
>gi|296449033|ref|ZP_06890823.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08]
gi|296879856|ref|ZP_06903829.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07]
gi|296262126|gb|EFH08931.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08]
gi|296429145|gb|EFH15019.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07]
Length = 353
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+ A+ L++G V PT+T+YGL +A + A+ +YE K R + PL + + E ++
Sbjct: 27 IQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDL 86
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ E L PGP+TI+ N+ + + + + + VA+R+P + R ++K
Sbjct: 87 AKDISDKAKLVIEKLWPGPITIILNKKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEAGI 146
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
P+A SAN S PS + + ++ +++ +DG ++ FG ST++DL+EE I
Sbjct: 147 PIAAPSANISGRPSP---TKAKHVYEEMNGRVDGIVLGGDSNFGLESTVLDLTEETPM-I 202
Query: 216 VRKGVCYDKILKIL 229
+R G ++L+ L
Sbjct: 203 LRPGSITKEVLEEL 216
>gi|225867306|ref|YP_002752684.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102]
gi|229187551|ref|ZP_04314691.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1]
gi|376269239|ref|YP_005121951.1| hypothetical protein bcf_26725 [Bacillus cereus F837/76]
gi|225785999|gb|ACO26216.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102]
gi|228595918|gb|EEK53598.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1]
gi|364515039|gb|AEW58438.1| Hypothetical protein bcf_26725 [Bacillus cereus F837/76]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|27363877|ref|NP_759405.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
gi|27359994|gb|AAO08932.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
Length = 328
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G +VA+PT+T+YGLA DATN A+ ++ K R + PL + + + + WA
Sbjct: 25 AKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVHIGRVEQLTDWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ L PGPVT++ ++ H+ + + + +R+P H LL+
Sbjct: 85 IDIPEEAYTLAQAYWPGPVTLLLKKAPHVTPVVTGGLETIGIRMPAHDVFATLLQSSGMA 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S T + L +++ V+DGG ++ STIVDL+E+ + I+R
Sbjct: 145 VAAPSANPYKKLSPTSAKHVMNSLGGKIAAVLDGGDCAH--GLESTIVDLTEKP-FRILR 201
Query: 218 KG 219
G
Sbjct: 202 TG 203
>gi|423451425|ref|ZP_17428278.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG5X1-1]
gi|401145754|gb|EJQ53276.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG5X1-1]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + V+ +L+ PGP+TI+ R + ++ + + V VR+PDH LL+ +
Sbjct: 84 R--EIPPVAEKLMEHFWPGPLTIILPRKKGISERVTAGLNTVGVRMPDHPVALALLEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|37678973|ref|NP_933582.1| translation factor [Vibrio vulnificus YJ016]
gi|37197715|dbj|BAC93553.1| putative translation factor [Vibrio vulnificus YJ016]
Length = 328
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G +VA+PT+T+YGLA DATN A+ ++ K R + PL + + + + WA
Sbjct: 25 AKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVHIGRVEQLTDWA 84
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ L PGPVT++ ++ H+ + + + +R+P H LL+
Sbjct: 85 IDIPEEAYTLAQAYWPGPVTLLLKKAPHVTPVVTGGLETIGIRMPAHDVFATLLQSSGMA 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S T + L +++ V+DGG ++ STIVDL+E+ + I+R
Sbjct: 145 VAAPSANPYKKLSPTSAKHVMNSLGGKIAAVLDGGDCAH--GLESTIVDLTEKP-FRILR 201
Query: 218 KG 219
G
Sbjct: 202 TG 203
>gi|217076581|ref|YP_002334297.1| universally conserved protein [Thermosipho africanus TCF52B]
gi|419761128|ref|ZP_14287388.1| universally conserved protein [Thermosipho africanus H17ap60334]
gi|217036434|gb|ACJ74956.1| universally conserved protein [Thermosipho africanus TCF52B]
gi|407513809|gb|EKF48690.1| universally conserved protein [Thermosipho africanus H17ap60334]
Length = 337
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 92/170 (54%), Gaps = 8/170 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
+K G +VA PT+T+YGL A KA++ ++++K R + PL + V + + A+
Sbjct: 25 IKSGGLVAFPTETVYGLGASAFEEKAVDNIFKVKGRAKDNPLIVHVDRFEKLLEIAEVAE 84
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
FE + +L PGPVT V + +L + + V VRIP H R+L K P+A S
Sbjct: 85 KYFEAINKLTPGPVTFVLKQKINLPKNVTAGLKTVGVRIPAHPVARKLCKCA-GPIAAPS 143
Query: 164 ANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
AN S +PS T + L+ ++ +ID G N E FG STI+DL+ E
Sbjct: 144 ANLSGKPSPTDSQAVIEDLFGKIDFIIDAG---NSE-FGLESTIIDLTSE 189
>gi|346309447|ref|ZP_08851536.1| hypothetical protein HMPREF9457_03245 [Dorea formicigenerans
4_6_53AFAA]
gi|345899222|gb|EGX69072.1| hypothetical protein HMPREF9457_03245 [Dorea formicigenerans
4_6_53AFAA]
Length = 353
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VA PT+T+YGL DA N A +Y K R + PL + ++ + + K A
Sbjct: 25 AGDFLKEGGLVAFPTETVYGLGADALNKTASTKIYAAKGRPSDNPLIVHITNMGALDKIA 84
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D V++++ PGP+T++F ++E + E + VAVR+P + R L+
Sbjct: 85 DIIPEVAYKVADACWPGPLTMIFQKTEEVPYETTGGLDTVAVRMPSDEIARALIDAGGGY 144
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S PS T + + L ++ +++DGG + G STI+D++
Sbjct: 145 IAAPSANTSGRPSPTKAEHVEEDLSGKIEMILDGGAVD----IGVESTILDMT 193
>gi|425045836|ref|ZP_18449905.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 510]
gi|403026275|gb|EJY38276.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 510]
Length = 341
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 14 AAETLKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A RIPD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRIPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|297626234|ref|YP_003687997.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921999|emb|CBL56561.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 292
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 6/179 (3%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFE-L 108
+ LPTDT+YG+ DA ++ A+ L K R + P + ++E +P + + E +
Sbjct: 60 IVLPTDTVYGIGADAFSADAVQGLLNAKHRGRDMPPPVLIAEPAMLPALVSSIPLGAERM 119
Query: 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESN 168
+ E PG +T++ N + L+++L +AVR+PD+ R LL L PLA++SAN S
Sbjct: 120 IKECWPGALTLILNAATALHMDLGETAGTIAVRVPDNDDARALL-LHTGPLAVSSANISG 178
Query: 169 EPSTLCIN-EFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGV-CYDKI 225
+PS + L ++V +DGG P STIVD + I+R+GV +D++
Sbjct: 179 QPSATDVGAAIAMLGDSVAVYLDGGRTPGP--VASTIVDFTVSPAGRILRQGVIGFDQL 235
>gi|256751355|ref|ZP_05492234.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|256749737|gb|EEU62762.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
CCSD1]
Length = 354
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 120/215 (55%), Gaps = 21/215 (9%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M I++V +P+ L+ AA+ +K+G +VA PT+T+YG+ ++ N +A+ ++ K R
Sbjct: 1 MTKIIRVNKNNPEIELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRP 60
Query: 81 VNKPLAICVSE-------ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNP 133
+ PL + ++E + ++P+ A T L+ + PGP+T++F +S+ +
Sbjct: 61 QDNPLIVHIAELEQIYDLVKEVPQKAKT------LMKKFWPGPLTLIFKKSQKVPYVNTA 114
Query: 134 NVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ VA+R+P + L+K + P++ SAN S +PS T + + L+ ++ V+IDGG
Sbjct: 115 GMDTVAIRMPSNTIAHLLIKRAEVPISAPSANVSGKPSPTDASHVIEDLYGKVDVIIDGG 174
Query: 193 IISNPERFGSTIVDLSEENVYSIVRKGVCYDKILK 227
ST++DL+E+ V I+R G ++L+
Sbjct: 175 KCDV--GVESTVLDLTEK-VPVILRPGAVTLEMLR 206
>gi|423520844|ref|ZP_17497317.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuA4-10]
gi|401179941|gb|EJQ87104.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuA4-10]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + +V+ +L+ PGP+TI+ R + ++ + + V VR+PDH L++ +
Sbjct: 84 R--EIPSVAEKLMEHFWPGPLTIILPRKKGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|436838193|ref|YP_007323409.1| Sua5/YciO/YrdC/YwlC family protein [Fibrella aestuarina BUZ 2]
gi|384069606|emb|CCH02816.1| Sua5/YciO/YrdC/YwlC family protein [Fibrella aestuarina BUZ 2]
Length = 208
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 13/187 (6%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIK--KRDVNKPLAICVSEITDIPKW 98
A L+ G VV PTDT+YG+ CD N++A+ + IK K N IC +++ I +
Sbjct: 22 ASALRDGAVVIYPTDTIYGMGCDIHNARAVERVARIKGIKPQKNDFSFICY-DLSHIADY 80
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A +F+L+ LLPGP T++ + + LN + V +R+PD+ RQL+ + +P
Sbjct: 81 ARVSNSAFKLMKRLLPGPYTVILEANNQVPKLLNSSKKTVGIRVPDNDIPRQLVHELGNP 140
Query: 159 LALTSANESNEPSTLCINE-----FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
+ +T+ EP T+ + F+K + +VIDGGI ST++D + ++ +
Sbjct: 141 I-ITTTLRDEEPGTVEYSTDPELIFEKYRHDVDIVIDGGIGG---YVPSTVIDATTDD-F 195
Query: 214 SIVRKGV 220
++R G+
Sbjct: 196 EVIRLGL 202
>gi|255657436|ref|ZP_05402845.1| hypothetical protein CdifQCD-2_17451 [Clostridium difficile
QCD-23m63]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+ A+ L++G V PT+T+YGL +A + A+ +YE K R + PL + + E ++
Sbjct: 20 IQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDL 79
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ E L PGP+TI+ N+ + + + + + VA+R+P + R ++K
Sbjct: 80 AKDISDKAKLVIEKLWPGPITIILNKKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEAGI 139
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
P+A SAN S PS + + ++ +++ +DG ++ FG ST++DL+EE I
Sbjct: 140 PIAAPSANISGRPSP---TKAKHVYEEMNGRVDGIVLGGDSNFGLESTVLDLTEETPM-I 195
Query: 216 VRKGVCYDKILKIL 229
+R G ++L+ L
Sbjct: 196 LRPGSITKEVLEEL 209
>gi|406995621|gb|EKE14288.1| hypothetical protein ACD_12C00590G0002 [uncultured bacterium]
Length = 352
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
LK G +V P+DT+YGL CDATN +A+ L E K R V KP+++ S I +
Sbjct: 21 ILKSGGLVIFPSDTVYGLLCDATNEQAVKKLIEFKNRPVGKPISV-FSNFELINQLVKIS 79
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
L ++LPGP T++ ++ L + + +RIP ++++ L+ P+ T
Sbjct: 80 NQQLTTLKQILPGPFTLILPSKHKVSKLLESEIGTLGIRIPMYRYIEVLVNRFKKPITAT 139
Query: 163 SAN-------ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
SAN S EP + E QK +++++D G + P ST+VDLS+ V I
Sbjct: 140 SANLVGQSPHYSTEPLLKALTEKQK--QLITLIVDAGKL--PRNKPSTVVDLSQPEV-KI 194
Query: 216 VRKG 219
+R+G
Sbjct: 195 LRQG 198
>gi|359438981|ref|ZP_09228962.1| probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Pseudoalteromonas sp. BSi20311]
gi|358026367|dbj|GAA65211.1| probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Pseudoalteromonas sp. BSi20311]
Length = 335
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G VALPT+T+YGLA DATNS A+ ++ K R N PL + + + + WA
Sbjct: 19 AVALLKAGECVALPTETVYGLAADATNSGAVAKIFTAKGRPTNHPLIVHIPNQSHLHNWA 78
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + + L PGP+T++ N ++LN + + + +R+P H +LK +++
Sbjct: 79 KNVNKAAITLADAFWPGPLTLILNAKDNLNSPVTGGLPTIGLRVPAHPEFLAVLKQLNTG 138
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
LA SAN + S + + L ++S V+ GG + STIVD S + + I+R
Sbjct: 139 LAAPSANRYKQLSPISAAHVIRDLNGRISAVLQGGECN--VGIESTIVDASSQQL-RILR 195
Query: 218 KG 219
G
Sbjct: 196 PG 197
>gi|301056793|ref|YP_003795004.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus biovar
anthracis str. CI]
gi|300378962|gb|ADK07866.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus biovar
anthracis str. CI]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|423573023|ref|ZP_17549142.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MSX-D12]
gi|401216492|gb|EJR23204.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MSX-D12]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|300117839|ref|ZP_07055606.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1]
gi|298724703|gb|EFI65378.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|30265348|ref|NP_847725.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames]
gi|47778411|ref|YP_022236.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49188160|ref|YP_031413.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne]
gi|49480413|ref|YP_039318.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52140237|ref|YP_086594.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L]
gi|65317301|ref|ZP_00390260.1| COG0009: Putative translation factor (SUA5) [Bacillus anthracis
str. A2012]
gi|165871252|ref|ZP_02215901.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488]
gi|170688185|ref|ZP_02879396.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465]
gi|170709376|ref|ZP_02899789.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389]
gi|177651870|ref|ZP_02934453.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174]
gi|206978500|ref|ZP_03239359.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97]
gi|217962814|ref|YP_002341392.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187]
gi|218906503|ref|YP_002454337.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820]
gi|227818088|ref|YP_002818097.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC
684]
gi|228917934|ref|ZP_04081470.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228930333|ref|ZP_04093337.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228949046|ref|ZP_04111318.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229094437|ref|ZP_04225509.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42]
gi|229124829|ref|ZP_04254007.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201]
gi|229142067|ref|ZP_04270592.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26]
gi|229199451|ref|ZP_04326114.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293]
gi|229600982|ref|YP_002869540.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248]
gi|254686252|ref|ZP_05150111.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724247|ref|ZP_05186031.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A1055]
gi|254735253|ref|ZP_05192962.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Western
North America USA6153]
gi|254755794|ref|ZP_05207826.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Vollum]
gi|254762134|ref|ZP_05213980.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str.
Australia 94]
gi|375287349|ref|YP_005107788.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NC7401]
gi|386739183|ref|YP_006212364.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. H9401]
gi|421509503|ref|ZP_15956408.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. UR-1]
gi|421640596|ref|ZP_16081177.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. BF1]
gi|423355806|ref|ZP_17333430.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus IS075]
gi|423375122|ref|ZP_17352459.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus AND1407]
gi|423571882|ref|ZP_17548119.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MSX-A12]
gi|30260026|gb|AAP29211.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames]
gi|47552116|gb|AAT34711.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49182087|gb|AAT57463.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne]
gi|49331969|gb|AAT62615.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51973706|gb|AAU15256.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L]
gi|164712919|gb|EDR18447.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488]
gi|170125724|gb|EDS94638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389]
gi|170667878|gb|EDT18630.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465]
gi|172082574|gb|EDT67638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174]
gi|206743290|gb|EDZ54738.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97]
gi|217063465|gb|ACJ77715.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187]
gi|218539161|gb|ACK91559.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820]
gi|227004860|gb|ACP14603.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC
684]
gi|228584027|gb|EEK42182.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293]
gi|228641356|gb|EEK97662.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26]
gi|228658620|gb|EEL14282.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201]
gi|228688974|gb|EEL42801.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42]
gi|228810619|gb|EEM56968.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228829319|gb|EEM74952.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228841731|gb|EEM86842.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229265390|gb|ACQ47027.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248]
gi|358355876|dbj|BAL21048.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NC7401]
gi|384389034|gb|AFH86695.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. H9401]
gi|401081831|gb|EJP90104.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus IS075]
gi|401092999|gb|EJQ01120.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus AND1407]
gi|401199306|gb|EJR06210.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MSX-A12]
gi|401820480|gb|EJT19645.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. UR-1]
gi|403392275|gb|EJY89530.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. BF1]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|118480360|ref|YP_897511.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam]
gi|196042389|ref|ZP_03109654.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99]
gi|118419585|gb|ABK88004.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam]
gi|196026781|gb|EDX65423.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|228936610|ref|ZP_04099404.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228823045|gb|EEM68883.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 346
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|372324055|ref|ZP_09518644.1| YrdC/Sua5 family protein required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Oenococcus kitaharae DSM
17330]
gi|366982863|gb|EHN58262.1| YrdC/Sua5 family protein required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Oenococcus kitaharae DSM
17330]
Length = 338
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 11/196 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L KG VVA PT+T+YG+ DAT S+ ++ ++ KKR + PL + VS+ + ++A
Sbjct: 15 AADILAKGGVVAFPTETVYGIGADATKSEPVDKVFAAKKRPHDNPLIVTVSDDQMLRRFA 74
Query: 100 DTHTVSFELLAELLPGPVTIVFN--RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +L+A PG +T++ E L + ++ A R P + R L+ L ++
Sbjct: 75 KLDQRAEKLIAHFWPGSLTLILPLLDDEILPSNVTAGLSTAAFRNPKSQVTRNLISLFNN 134
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+ SAN S +PS T + + ++ VID G P + G STIVDLS + +
Sbjct: 135 PIVGPSANLSTKPSTTTAAHVMHDMAGRIDAVIDDG----PSQIGVESTIVDLSVPDA-T 189
Query: 215 IVRKG-VCYDKILKIL 229
I+R G V D+I ++
Sbjct: 190 ILRPGAVTADEIAAVI 205
>gi|336118670|ref|YP_004573441.1| hypothetical protein MLP_30240 [Microlunatus phosphovorus NM-1]
gi|334686453|dbj|BAK36038.1| hypothetical protein MLP_30240 [Microlunatus phosphovorus NM-1]
Length = 294
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 15/200 (7%)
Query: 35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT- 93
+A L A ++ G VA PTDT+YG+ DA N A++ L ++ +D P+ + +S+ +
Sbjct: 22 QALLSADAAVQAGEAVAFPTDTVYGVGVDAFNDDAVSHLRALRVQDAEVPVTVLISDGSL 81
Query: 94 ------DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
+IP A+ +L+ + PGP+TI+ L L +A+R+PD
Sbjct: 82 LRALAVEIPDAAN------DLIRKHWPGPLTIICRPQPTLRLGSVIVANTIALRVPDSPI 135
Query: 148 LRQLLKLMDSPLALTSANESNEPSTL-CINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
+ LL+ P+A++SAN S P +L C + +L + +SV +DGG + + + STIVD
Sbjct: 136 AQDLLRRT-GPMAVSSANISGLPPSLTCDDALGQLGANVSVYLDGGRLGDDGQPASTIVD 194
Query: 207 LSEENVYSIVRKGVCYDKIL 226
++ + I+R+G +L
Sbjct: 195 FTQADHGQILRRGALTRAVL 214
>gi|150024959|ref|YP_001295785.1| translation factor [Flavobacterium psychrophilum JIP02/86]
gi|149771500|emb|CAL42969.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86]
Length = 206
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 25 MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +K+ +P A + LK G ++ PTDT+YGL CD TN+KA+ + +IK
Sbjct: 1 MSQFIKIYPDNPNEAAIKKVVDVLKNGGLIIYPTDTVYGLGCDITNTKALERIAKIKGIK 60
Query: 81 VNKP--LAIC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
+ K +C +S I+D K DT T F++L LPGP T + + +L E T
Sbjct: 61 LEKANFSFVCHDLSNISDYVKQIDTAT--FKILKRALPGPYTFILPGNNNLPKEFKKKTT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
V +R+PD+ +++K++ +P+ TS ++ +E + F+K + + +VIDGG
Sbjct: 119 -VGIRVPDNNIALEIVKMLGNPIVSTSIHDDDEVIEYTTDPELIFEKWQNLVDLVIDGGY 177
Query: 194 ISNPERFGSTIVDLSEENVYSIVRKG 219
N GSTI+DLS ++R+G
Sbjct: 178 GDN---VGSTIIDLSGHEP-EVIREG 199
>gi|422729460|ref|ZP_16785861.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0012]
gi|315150061|gb|EFT94077.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0012]
Length = 340
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 112/206 (54%), Gaps = 15/206 (7%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN + + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKIL-----KILHKYHLVEKNTFP 241
+ L ++ HL+ +N P
Sbjct: 197 ITKEQLESIIPQVKIDTHLISENAAP 222
>gi|420148450|ref|ZP_14655718.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri CECT
5714]
gi|398400002|gb|EJN53598.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri CECT
5714]
Length = 334
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 23/212 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
A + LKKG +VA PT+T+YGL ATN KA+ +Y K R + PL + VS+ +
Sbjct: 18 AVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENYV 77
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIV-FNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++P+ A +L+ PGP+TI+ F + L + + A R PD + L
Sbjct: 78 NEVPERAK------KLIKHFWPGPLTIILFVKEGTLPDAITGGLPTAAFRCPDDELTHDL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ + P+ SAN S +PS T + + L +++ +ID G P G STIVDLS
Sbjct: 132 ISELGKPIVGPSANTSTKPSPTTAGHVYHDLKGKIAGIIDNG----PTEIGLESTIVDLS 187
Query: 209 EENVYSIVRKG-VCYDKILKILHKYHLVEKNT 239
E +++R G + ++I K+L + L+ K T
Sbjct: 188 VETP-TVLRPGEITPEEISKVLGEEVLMNKGT 218
>gi|336252605|ref|YP_004595712.1| Sua5/YciO/YrdC/YwlC family protein [Halopiger xanaduensis SH-6]
gi|335336594|gb|AEH35833.1| Sua5/YciO/YrdC/YwlC family protein [Halopiger xanaduensis SH-6]
Length = 218
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 8/190 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS--EITDIPKWADT 101
+++G +V PT+T+YGLA DA ++ A+ ++E+K RD +KP+++ V E + +
Sbjct: 32 IREGGLVVYPTETVYGLAADALDADAVKRVFEVKGRDRSKPVSLAVPTFETAIEAGYIEA 91
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
E LPGPVT++ R E + L +V +R+PD + LL + P+
Sbjct: 92 TERERAFAEEFLPGPVTVLCERREVVPDVLTAGGEQVGIRVPDCEPAMALLAAAERPITS 151
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
TSAN S EPS + E + +VV+DGG E ST+VDLS +I R+G
Sbjct: 152 TSANVSGEPSARTVEEIGQQVRDEAVVLDGGETQGTE---STVVDLS---TGTIHRRGAL 205
Query: 222 YDKILKILHK 231
D+I L +
Sbjct: 206 ADEIEAWLEE 215
>gi|42520658|ref|NP_966573.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410398|gb|AAS14507.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 195
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 12/183 (6%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
++ +V PT+T+Y LAC+A ++++I +Y+IKKR NKPL+I VS+I ++ K A
Sbjct: 7 NAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKV 66
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPN---VTKVAVRIPDHKFLRQLLKLMDSP 158
+L+ PGP+T + N + PN + +RIP+H +L + P
Sbjct: 67 KERYIDLINHFSPGPITYILPLK---NNNMLPNEFFKDSIGIRIPEHPIAISILNKLKVP 123
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVI-DGGIISNPERFGSTIVDLSEENVYSIV 216
+ TS N S + S N+ Q + LSVVI D ++S E STI+DL+E+ + ++
Sbjct: 124 IVATSTNISGKESVCKANDIPQSIKQHLSVVIEDDELVSGIE---STIIDLTEDKI-KVL 179
Query: 217 RKG 219
R+G
Sbjct: 180 REG 182
>gi|325847835|ref|ZP_08170057.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480853|gb|EGC83906.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 345
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE---ITDIP 96
AA+ +K G +VA PT+T+YGL D N +A +++ K R + PL + + E + ++
Sbjct: 21 AAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPEDNPLILHIDEDYKLDELV 80
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ D T F L+ L PGP+T++ +S + + VAVR P K R+ +K D
Sbjct: 81 EKVDERT-KF-LIKNLWPGPLTVILKKSSKIPDIITGGGDTVAVRRPKDKLAREFIKFCD 138
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
P+A SAN S PS T + F + ++ ++IDGG S+ ST++D+S EN
Sbjct: 139 RPIAAPSANISGRPSPTNAKDVFYDMNGRIPLIIDGG--SSDIGIESTVIDMSLEN 192
>gi|229033958|ref|ZP_04188912.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271]
gi|228728384|gb|EEL79406.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271]
Length = 346
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + +
Sbjct: 24 AAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDVIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L+
Sbjct: 84 KEIPPVAE------KLMEHFWPGPLTIILPRKEGISEKVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D +
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA- 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|83854875|ref|ZP_00948405.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1]
gi|83842718|gb|EAP81885.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1]
Length = 314
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
DP AA L++G +VALPT+T+YGL DA N A+ +YE K R PL I V++
Sbjct: 7 ADPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPLIIHVAD 66
Query: 92 ITDI---PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHK 146
+ +W+DT + L + PGP+T+V ++ L + + V +R+P H
Sbjct: 67 VDQARRYGRWSDTAEI---LASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVPAHP 123
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
R +L+ + P+A SAN S + S T + L +++ V+D G
Sbjct: 124 TARAILRALGGPVAAPSANPSGKISATTAQHVLSGLEGRIAAVVDDG 170
>gi|297170667|gb|ADI21691.1| putative translation factor (SUA5) [uncultured Verrucomicrobiales
bacterium HF0130_14P10]
Length = 337
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK--W 98
A L G +VALPT+T+YGLAC A N A+ ++E K+R +N PL I VS++T+
Sbjct: 16 AGLLHSGQIVALPTETVYGLACLALNKLAVAKVFEAKQRPINDPLIIHVSDLTEAQSVCR 75
Query: 99 ADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D + LL+E+ PGP+T+V +++ + + ++ VAVR P + R++L L+ +
Sbjct: 76 PDHRAI---LLSEVFWPGPLTLVLPKTKIVPTIVTSGLSTVAVRSPANPVFREILNLVSA 132
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PLA SAN + S T + Q + V+DGG P + G ST+VDLS
Sbjct: 133 PLAAPSANPFGKISPTRAEHIKQSFGDEHPPVVDGG----PTKLGIESTVVDLSSSRTR- 187
Query: 215 IVRKG 219
I+R G
Sbjct: 188 ILRPG 192
>gi|421526229|ref|ZP_15972838.1| SUA5 protein [Fusobacterium nucleatum ChDC F128]
gi|402257988|gb|EJU08461.1| SUA5 protein [Fusobacterium nucleatum ChDC F128]
Length = 217
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 9/201 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ +I V+D K ALL+ Q +KKG ++ PTDT+YGL TN ++IN +Y K R
Sbjct: 6 KIDNISDVSDDKWALLS-QKIKKGSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAEL----LPGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + LL +L PG +T++ R EH+ + +
Sbjct: 65 PLIALLSSVDKVEEVAYVSDRNKGLLDKLAKAFWPGALTVILKRKEHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E S +E + + S++ ++ID G E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGEASPKSYDELSEAIKSKVDILIDSGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG 219
STI+DL+ + V I+RKG
Sbjct: 185 --ASTIIDLTSD-VPKILRKG 202
>gi|423554221|ref|ZP_17530547.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus ISP3191]
gi|401181360|gb|EJQ88511.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus ISP3191]
Length = 346
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ +A PT+T+YGL +A N +AI ++E K R + PL + + S++ I
Sbjct: 24 AAKLLRENETIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLYGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
K + V+ +L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ +
Sbjct: 84 K--EIPPVAEKLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNEKIAGIVDGGATGV--GVESTVIDCTSA-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|160894646|ref|ZP_02075421.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50]
gi|156863580|gb|EDO57011.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. L2-50]
Length = 359
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 17/216 (7%)
Query: 24 KMCSIVKVTDPKAALL---AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
KM +IV D + L A+ LK G +VA PT+T+YGL DA N KA +Y K R
Sbjct: 12 KMKTIVAKADLENEELFRKASDILKSGGLVAFPTETVYGLGGDALNPKASEKIYSAKGRP 71
Query: 81 VNKPLAICVSEITDIPKW---ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTK 137
+ PL + +++ + W A+ T + L+ PGP+TI+F + + + E +
Sbjct: 72 SDNPLIVHIADTASV--WELVAEVSTQAQMLMEAFWPGPLTIIFKKKDIVPHETTGGLET 129
Query: 138 VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISN 196
VA+R+P H +L+K +A SAN S PS T + + L ++ +++DGG
Sbjct: 130 VAIRMPSHPAAMKLIKDSGVYIAAPSANLSGRPSPTTAAHVEEDLSGRIDMILDGG---- 185
Query: 197 PERFG--STIVDLSEENVYSIVRKG-VCYDKILKIL 229
P G STIVD++ + +I+R G + D I IL
Sbjct: 186 PVGIGIESTIVDVTGDRP-TILRPGYISADMIKNIL 220
>gi|228472867|ref|ZP_04057624.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228275449|gb|EEK14226.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 207
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP--LAIC--VSEITDIPK 97
CL++G V+ PTDT+YGL CD T+SKA+ + ++K ++K IC +S ++D K
Sbjct: 22 DCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLDKANFSFICADLSNLSDYVK 81
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
DT T F+LL LPG T + S +L E T V +RIPD+ R L++ + +
Sbjct: 82 QIDTTT--FKLLKRALPGAYTFILPGSNNLPKEFKKKKT-VGIRIPDNTIARTLVEKLGN 138
Query: 158 PLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
P+ +S + +E + F+K ++ +VIDGG N ST++DLS V
Sbjct: 139 PIVSSSIYDEDEVLEYTTDPELIFEKWQDKVDIVIDGGYGDN---VASTVIDLS-SGVPE 194
Query: 215 IVRKG 219
++R+G
Sbjct: 195 LIRQG 199
>gi|301064000|ref|ZP_07204465.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
gi|300441911|gb|EFK06211.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
Length = 209
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
++ L++G V+A PTDT YG+ CD N K I +Y +K R + KP + + +I K+A
Sbjct: 32 SEILEQGGVIAYPTDTFYGIGCDLYNKKGIQHIYRLKNRPLKKPFSFVCDGLNEISKYAL 91
Query: 101 THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+++ + LLPGP T + + + + V +R+P++ R +++ + P+
Sbjct: 92 VSNYAYKTMKRLLPGPYTFILEGTRLVPKIMLTKRKTVGIRVPNNNITRAIVRTLGRPII 151
Query: 161 LTSANESNEPSTLCINEFQKLWSQLSVVIDGGII-SNPERFGSTIVDLSEENVYSIVRKG 219
TSA +EP + L V+IDGG++ NP S I D E I+R+G
Sbjct: 152 STSAG-FDEPRAIE----DAYGVNLDVIIDGGLLYPNPSSVVSLIDDEPE-----IIREG 201
>gi|431805408|ref|YP_007232309.1| YrdC/Sua5 family protein [Liberibacter crescens BT-1]
gi|430799383|gb|AGA64054.1| YrdC/Sua5 family protein [Liberibacter crescens BT-1]
Length = 326
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 6/198 (3%)
Query: 25 MCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP 84
M I+ +TD A +A + L+ G +A+PT+T+YGLA D+ N AI LYEIKKR + P
Sbjct: 1 MVKILSITDANAIKIACEFLEAGIPIAIPTETVYGLAVDSRNPLAIRRLYEIKKRPLFNP 60
Query: 85 LAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRI 142
L V++I+ K+ + VS L PGP+T+ S H + N+ + +R+
Sbjct: 61 LICHVADISMACKYVNFDPVSLRLAKAFWPGPLTLNLPLSSHNTIHPLATANLKTICIRV 120
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFG 201
P F +L+ + PL + SAN S S C + Q + + +++DGG ++
Sbjct: 121 P-CGFSNKLILAYNYPLTIPSANLSGRISLTCAKDIQATFGDNVPLILDGG--NSKIGLE 177
Query: 202 STIVDLSEENVYSIVRKG 219
STI+ + + ++R G
Sbjct: 178 STIIKVKLDGQLQMLRPG 195
>gi|290969301|ref|ZP_06560826.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1
str. 28L]
gi|290780807|gb|EFD93410.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1
str. 28L]
Length = 348
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 13/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A C+++G +V PT+T+YGL + + A ++E K R + PL + V++ + +
Sbjct: 21 AGACIRQGGLVVFPTETVYGLGANGLDETACRRIFEAKGRPSDNPLILTVADRQGAEQIS 80
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ +L+A PGP+T+V R + + VAVR PDH R L+ P
Sbjct: 81 DRISPLAEKLMARFWPGPLTLVLPRRSCVPDVATGGLDTVAVRCPDHDICRAFLQYAQVP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + ++ ++IDGG G STIV+ + + +I
Sbjct: 141 VAGPSANLSTRPSPTTAAEALHDMDGRVQMIIDGGAC----HIGVESTIVECTAADEVTI 196
Query: 216 VRKGVCYDKIL-----KILHKYHLVEKNTFP 241
+R G ++L K++ HLV P
Sbjct: 197 LRPGGITPEMLAEVAAKVVLDTHLVSGKGVP 227
>gi|304314044|ref|YP_003849191.1| Sua5-related protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587503|gb|ADL57878.1| Sua5-related protein [Methanothermobacter marburgensis str.
Marburg]
Length = 207
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 99/172 (57%), Gaps = 7/172 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +++G V PTDT+YGL +A + +++ L+ IK R +KP++ICVS +++IP+++
Sbjct: 19 AISVMERGGAVIYPTDTIYGLGVNALDGESVRKLFRIKGRAPDKPVSICVSGVSEIPRFS 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E++ +LPGP T++ + + + L +KV VR+PD + R++ P+
Sbjct: 79 KPSEHAMEVIRRILPGPYTVLLEKKDLVPDILTGGSSKVGVRVPDDEVCRRISARF--PV 136
Query: 160 ALTSANESN-EPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
TSAN S +PS + L ++ +++D G + E ST+VDL+ E
Sbjct: 137 TATSANISGKQPSANPHDIMGDL--EVDLMLDAGECDSTE--PSTVVDLTVE 184
>gi|383619779|ref|ZP_09946185.1| Sua5/YciO/YrdC/YwlC family protein [Halobiforma lacisalsi AJ5]
gi|448696747|ref|ZP_21698082.1| Sua5/YciO/YrdC/YwlC family protein [Halobiforma lacisalsi AJ5]
gi|445782964|gb|EMA33804.1| Sua5/YciO/YrdC/YwlC family protein [Halobiforma lacisalsi AJ5]
Length = 193
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGLA DA + A+ ++E K RD +KP++ V + +
Sbjct: 7 AADAIESGELVVYPTETVYGLAADALEADAVERVFEAKGRDRSKPISFAVPSVPAALQHV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R + + L +V VR+PDH L + +P+
Sbjct: 67 RATERERRFMATFLPGPVTVLCRRGDEVPDVLTAGADRVGVRVPDHDLALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + ++ +VV+DGG E ST+VD+S E ++ R+
Sbjct: 127 TATSANVSGRESVRTAEDLDPEIREASAVVLDGGRTEGTE---STVVDVSSETIH---RR 180
Query: 219 GVCYDKI 225
G D+I
Sbjct: 181 GAMADEI 187
>gi|58696928|ref|ZP_00372427.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
Drosophila simulans]
gi|225630533|ref|YP_002727324.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi]
gi|58536842|gb|EAL60054.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
Drosophila simulans]
gi|225592514|gb|ACN95533.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi]
Length = 195
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 12/183 (6%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
++ +V PT+T+Y LAC+A ++++I +Y+IKKR NKPL+I VS+I ++ K A
Sbjct: 7 NAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKV 66
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPN---VTKVAVRIPDHKFLRQLLKLMDSP 158
+L+ PGP+T + N + PN + +RIP+H +L + P
Sbjct: 67 KERYIDLINHFSPGPITYILPLK---NNNILPNEFFKDSIGIRIPEHPIAISILNKLKVP 123
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVI-DGGIISNPERFGSTIVDLSEENVYSIV 216
+ TS N S + S N+ Q + LSVVI D ++S E STI+DL+E+ + ++
Sbjct: 124 IVATSTNISGKESVCKANDIPQSIKQHLSVVIEDDELVSGIE---STIIDLTEDKI-KVL 179
Query: 217 RKG 219
R+G
Sbjct: 180 REG 182
>gi|423100810|ref|ZP_17088516.1| Sua5/YciO/YrdC/YwlC family protein [Listeria innocua ATCC 33091]
gi|370792616|gb|EHN60472.1| Sua5/YciO/YrdC/YwlC family protein [Listeria innocua ATCC 33091]
Length = 345
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 9/205 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ L+ G VA PT+T+YGL DATN AI +Y K R + PL + +++ + ++
Sbjct: 21 AAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQFI 80
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ PGP+T++ + + L ++ ++ V VR+P+H +L+ +
Sbjct: 81 ASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVSAGLSTVGVRMPEHPVSLELIATANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + + L +++ +IDGG P G ST++D S +
Sbjct: 141 PIAAPSANRSGKPSPTTAEHVIEDLDGEIAGIIDGG----PTGVGLESTVIDCSLDVPII 196
Query: 215 IVRKGVCYDKILKILHKYHLVEKNT 239
+ G+ ++I +++ L +T
Sbjct: 197 LRPGGITKEQIEQVIGAVDLSTNST 221
>gi|297570958|ref|YP_003696732.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
DSM 20595]
gi|296931305|gb|ADH92113.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 215
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 6/195 (3%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+V TD +A + ++ G VV LPTDT+YG+ D + A+ L K R P +
Sbjct: 3 VVSSTDTQARTAVQKAVRAGKVVCLPTDTVYGVGADPFSYDAVTALLAAKSRTRAMPPPV 62
Query: 88 CVSEITDIPKWADTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
V+ I A+T S L+ E PG +TI+ E L +L VA+R+PD
Sbjct: 63 LVASIEQAESLAETVPASARALMEEFWPGALTIILPARETLGWDLGETFGTVALRMPDDS 122
Query: 147 FLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIV 205
R L + PLA+TSAN++ +P I + + +L ++V +DGG ++P S+IV
Sbjct: 123 ATRDFLAHI-GPLAVTSANKTGQPPATTIADAETQLGESVAVYVDGG--TSPGGVPSSIV 179
Query: 206 DL-SEENVYSIVRKG 219
+ Y +VR G
Sbjct: 180 RWHPATDTYDVVRLG 194
>gi|67920201|ref|ZP_00513721.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501]
gi|67857685|gb|EAM52924.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501]
Length = 217
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 108/190 (56%), Gaps = 10/190 (5%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
L++G ++ PTDT+Y + CD + A+ + ++K+ +KPL S +++I K+A
Sbjct: 23 ALRQGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIAKYAGVE 82
Query: 103 TVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
++ ++ L+PGP T + ++ + L ++P +R+PDH + +L+ +++P+
Sbjct: 83 DEAYRVMKRLIPGPYTFLLPATKAVPKLVMSPKRKSTGIRVPDHPICQAILQGLENPIVS 142
Query: 162 TSA---NESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
TSA +E E TL + + F L +Q+ ++ID + P STI+D++ + SI
Sbjct: 143 TSAHLPDEDGEFPTLGLEKVKLFDILENQVDIIIDNSL--EPGFEVSTILDMTSDPP-SI 199
Query: 216 VRKGVCYDKI 225
+R+G+ ++++
Sbjct: 200 IRQGLGWEEL 209
>gi|257090698|ref|ZP_05585059.1| translation factor SUA5 [Enterococcus faecalis CH188]
gi|312905239|ref|ZP_07764359.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635]
gi|422687784|ref|ZP_16745955.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0630]
gi|256999510|gb|EEU86030.1| translation factor SUA5 [Enterococcus faecalis CH188]
gi|310631476|gb|EFQ14759.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635]
gi|315579266|gb|EFU91457.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0630]
Length = 340
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|257081920|ref|ZP_05576281.1| translation factor SUA5 [Enterococcus faecalis E1Sol]
gi|307287619|ref|ZP_07567662.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109]
gi|422703598|ref|ZP_16761418.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1302]
gi|256989950|gb|EEU77252.1| translation factor SUA5 [Enterococcus faecalis E1Sol]
gi|306501357|gb|EFM70660.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109]
gi|315165016|gb|EFU09033.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1302]
Length = 340
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|29377040|ref|NP_816194.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583]
gi|227554050|ref|ZP_03984097.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22]
gi|229549322|ref|ZP_04438047.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
29200]
gi|255972031|ref|ZP_05422617.1| translation factor SUA5 [Enterococcus faecalis T1]
gi|256763195|ref|ZP_05503775.1| translation factor SUA5 [Enterococcus faecalis T3]
gi|256957796|ref|ZP_05561967.1| translation factor SUA5 [Enterococcus faecalis DS5]
gi|256963676|ref|ZP_05567847.1| translation factor SUA5 [Enterococcus faecalis HIP11704]
gi|257079734|ref|ZP_05574095.1| translation factor SUA5 [Enterococcus faecalis JH1]
gi|257084462|ref|ZP_05578823.1| translation factor SUA5 [Enterococcus faecalis Fly1]
gi|257419963|ref|ZP_05596957.1| translation factor SUA5 [Enterococcus faecalis T11]
gi|294779686|ref|ZP_06745076.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1]
gi|300860679|ref|ZP_07106766.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD
Ef11]
gi|307271622|ref|ZP_07552893.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855]
gi|312953586|ref|ZP_07772423.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102]
gi|384519359|ref|YP_005706664.1| SUA5 domain protein [Enterococcus faecalis 62]
gi|397700692|ref|YP_006538480.1| SUA5 domain protein [Enterococcus faecalis D32]
gi|422693341|ref|ZP_16751355.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0031]
gi|422698997|ref|ZP_16756872.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1346]
gi|422701252|ref|ZP_16759093.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1342]
gi|422709735|ref|ZP_16767081.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0027]
gi|422714148|ref|ZP_16770884.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309A]
gi|422717024|ref|ZP_16773721.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309B]
gi|422725864|ref|ZP_16782321.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0312]
gi|422866788|ref|ZP_16913399.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1467]
gi|29344506|gb|AAO82264.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583]
gi|227176798|gb|EEI57770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22]
gi|229305559|gb|EEN71555.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
29200]
gi|255963049|gb|EET95525.1| translation factor SUA5 [Enterococcus faecalis T1]
gi|256684446|gb|EEU24141.1| translation factor SUA5 [Enterococcus faecalis T3]
gi|256948292|gb|EEU64924.1| translation factor SUA5 [Enterococcus faecalis DS5]
gi|256954172|gb|EEU70804.1| translation factor SUA5 [Enterococcus faecalis HIP11704]
gi|256987764|gb|EEU75066.1| translation factor SUA5 [Enterococcus faecalis JH1]
gi|256992492|gb|EEU79794.1| translation factor SUA5 [Enterococcus faecalis Fly1]
gi|257161791|gb|EEU91751.1| translation factor SUA5 [Enterococcus faecalis T11]
gi|294453240|gb|EFG21652.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1]
gi|300849718|gb|EFK77468.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD
Ef11]
gi|306511500|gb|EFM80499.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855]
gi|310628424|gb|EFQ11707.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102]
gi|315035854|gb|EFT47786.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0027]
gi|315151853|gb|EFT95869.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0031]
gi|315159266|gb|EFU03283.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0312]
gi|315170193|gb|EFU14210.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1342]
gi|315172488|gb|EFU16505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1346]
gi|315574710|gb|EFU86901.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309B]
gi|315580978|gb|EFU93169.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309A]
gi|323481492|gb|ADX80931.1| SUA5 domain protein [Enterococcus faecalis 62]
gi|329578088|gb|EGG59501.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1467]
gi|397337331|gb|AFO45003.1| SUA5 domain protein [Enterococcus faecalis D32]
Length = 340
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|384513897|ref|YP_005708990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1RF]
gi|430356853|ref|ZP_19425120.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1X]
gi|430368327|ref|ZP_19428151.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis M7]
gi|327535786|gb|AEA94620.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1RF]
gi|429514064|gb|ELA03620.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1X]
gi|429516357|gb|ELA05850.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis M7]
Length = 340
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|422719968|ref|ZP_16776591.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0017]
gi|422741616|ref|ZP_16795641.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2141]
gi|428767712|ref|YP_007153823.1| translation factor, Sua5/YciO/YrdC/YwlC family [Enterococcus
faecalis str. Symbioflor 1]
gi|315032689|gb|EFT44621.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0017]
gi|315143716|gb|EFT87732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2141]
gi|427185885|emb|CCO73109.1| translation factor, Sua5/YciO/YrdC/YwlC family [Enterococcus
faecalis str. Symbioflor 1]
Length = 340
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|171696344|ref|XP_001913096.1| hypothetical protein [Podospora anserina S mat+]
gi|170948414|emb|CAP60578.1| unnamed protein product [Podospora anserina S mat+]
Length = 413
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL 109
VA PT+T+YGL DAT+S A+ +Y K R + PL + VS+++ + + + EL+
Sbjct: 69 VAFPTETVYGLGADATSSTAVKGIYTAKGRPSDNPLIVHVSDLSMLSTLSTIPEIYHELI 128
Query: 110 AELLPGPVTI---VFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
++ PGP+TI V + L E+ +T R+PD R L++L+ PLA SAN
Sbjct: 129 SKFWPGPLTILLPVPTSGQLLAPEVTAGLTTFGARMPDSPLARALIQLVGKPLAAPSANA 188
Query: 167 SNEPS-TLCINEFQKLWSQLSVVIDGG 192
S PS T ++ + L ++ +++DGG
Sbjct: 189 STRPSPTKAVHVLEDLEGKIELILDGG 215
>gi|336325977|ref|YP_004605943.1| ribosome maturation factor [Corynebacterium resistens DSM 45100]
gi|336101959|gb|AEI09779.1| ribosome maturation factor [Corynebacterium resistens DSM 45100]
Length = 219
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 11/212 (5%)
Query: 25 MCSIVKVTDP----KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M V TDP +A +AA + G +V LPTDT+YG+ CDA +++A+ L K R
Sbjct: 1 MSQRVDATDPNDRERAIEIAASAVDGGRLVVLPTDTVYGIGCDAFDNQAVEALLRAKGRG 60
Query: 81 VNKPLAICVSEITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVA 139
+ P+ + V I +T + LL E PG +++V +++ L L V
Sbjct: 61 PDMPVPVLVGSWDTIQGLVRDYTYNMRLLVEAFWPGGLSMVVHQAPSLPWNLGDTRGTVM 120
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPE 198
+R+P+H +LL P+A++SAN S +P + + +L + ++V I+GG ++
Sbjct: 121 LRMPEHPIAIELLN-QTGPMAVSSANISGQPPATNVQMAEDQLGADVAVYINGGNATH-- 177
Query: 199 RFGSTIVDLSEENVYSIVRKG-VCYDKILKIL 229
STIVDLS I+R+G + ++I ++L
Sbjct: 178 GVASTIVDLSSGR-PRILREGAITAEQIGRVL 208
>gi|238853676|ref|ZP_04644044.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4]
gi|238833714|gb|EEQ25983.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4]
Length = 330
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 23/212 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
A + LKKG +VA PT+T+YGL ATN KA+ +Y K R + PL + VS+ +
Sbjct: 14 AVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIV-FNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++P+ A +L+ PGP+TI+ F + L + + A R PD + L
Sbjct: 74 NEVPERAK------KLIKHFWPGPLTIILFVKEGTLPDAVTGGLPTAAFRCPDDELTHDL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ + P+ SAN S +PS T + + L +++ +ID G P G STIVDLS
Sbjct: 128 ISELGKPIVGPSANTSTKPSPTTAGHVYHDLKGKIAGIIDNG----PTEIGLESTIVDLS 183
Query: 209 EENVYSIVRKG-VCYDKILKILHKYHLVEKNT 239
E +++R G + ++I K+L + L+ K T
Sbjct: 184 VETP-TVLRPGEITPEEISKVLGEEVLMNKGT 214
>gi|442612061|ref|ZP_21026757.1| TsaC protein (YrdC-Sua5 domains) required for
threonylcarbamoyladenosine t(6)A37 modification in tRNA
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441746175|emb|CCQ12819.1| TsaC protein (YrdC-Sua5 domains) required for
threonylcarbamoyladenosine t(6)A37 modification in tRNA
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 324
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Query: 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
K+ D A AA+ +K G +VA+PT+T+YGLA DA N A+ ++ K R + PL + +
Sbjct: 5 KLIDVDAVARAAKIIKSGELVAVPTETVYGLAADANNPDAVAKIFAAKGRPADHPLIVHI 64
Query: 90 SEITDIPKWAD-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFL 148
+ + WA+ +F+L A PGP+T + + +N + V VR P H +
Sbjct: 65 ASAEHLTNWAEHIPDSAFQLAAAFWPGPLTFILPKKNCVNNVVTGGHKSVGVRCPAHPLM 124
Query: 149 RQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIV 205
R+LL +++ LA SAN + S + L +++ V+DGG P G STI+
Sbjct: 125 RELLLELNTGLAAPSANPYKKISPTTAEQVLFGLEGKIAAVLDGG----PCEVGLESTIL 180
Query: 206 DLSEENVYSIVRKG 219
DL+ E I+R G
Sbjct: 181 DLTVETP-RILRAG 193
>gi|146300671|ref|YP_001195262.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae
UW101]
gi|146155089|gb|ABQ05943.1| translation factor SUA5 [Flavobacterium johnsoniae UW101]
Length = 206
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 18/206 (8%)
Query: 25 MCSIVKV--TDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +K+ P A +A + L+ G +V PTDT+YGL CD TNS+A+ + +IK
Sbjct: 1 MAEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVK 60
Query: 81 VNKP--LAIC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
+ K IC +S ++D + DT T F++L LPGP T + + +L E T
Sbjct: 61 LEKANFSFICHDLSNLSDYVRQIDTST--FKILKRALPGPYTFILPGNNNLPKEFKKKTT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
V +R+PD+ + ++++ + +P+ TS + ++ + F+K + + +VIDGG
Sbjct: 119 -VGIRVPDNNIVLEIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGY 177
Query: 194 ISNPERFGSTIVDLSEENVYSIVRKG 219
N GSTI+DLSE +VR+G
Sbjct: 178 GDN---VGSTIIDLSEHEPI-VVREG 199
>gi|16801746|ref|NP_472014.1| hypothetical protein lin2685 [Listeria innocua Clip11262]
gi|16415221|emb|CAC97911.1| lin2685 [Listeria innocua Clip11262]
Length = 345
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 9/205 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ L+ G VA PT+T+YGL DATN AI +Y K R + PL + +++ + ++
Sbjct: 21 AAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQFI 80
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ PGP+T++ + + L ++ ++ V VR+P+H +L+ +
Sbjct: 81 ASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVSAGLSTVGVRMPEHPVSLELIATANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + + L +++ +IDGG P G ST++D S +
Sbjct: 141 PIAAPSANRSGKPSPTTAEHVIEDLDGEIAGIIDGG----PTGVGLESTVIDCSLDVPII 196
Query: 215 IVRKGVCYDKILKILHKYHLVEKNT 239
+ G+ ++I +++ L +T
Sbjct: 197 LRPGGITIEQIEQVIGTVDLSTNST 221
>gi|116629881|ref|YP_815053.1| putative translation factor (SUA5) [Lactobacillus gasseri ATCC
33323]
gi|311110483|ref|ZP_07711880.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22]
gi|116095463|gb|ABJ60615.1| translation factor SUA5 [Lactobacillus gasseri ATCC 33323]
gi|311065637|gb|EFQ45977.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22]
Length = 334
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 23/212 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
A + LKKG +VA PT+T+YGL ATN KA+ +Y K R + PL + VS+ +
Sbjct: 18 AVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENYV 77
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIV-FNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++P+ A +L+ PGP+TI+ F + L + + A R PD + L
Sbjct: 78 NEVPERAK------KLIKHFWPGPLTIILFVKEGTLPDAVTGGLPTAAFRCPDDELTHDL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ + P+ SAN S +PS T + + L +++ +ID G P G STIVDLS
Sbjct: 132 ISELGKPIVGPSANTSTKPSPTTAGHVYHDLKGKIAGIIDNG----PTEIGLESTIVDLS 187
Query: 209 EENVYSIVRKG-VCYDKILKILHKYHLVEKNT 239
E +++R G + ++I K+L + L+ K T
Sbjct: 188 VETP-TVLRPGEITPEEISKVLGEEVLMNKGT 218
>gi|379010097|ref|YP_005267909.1| Sua5/YciO/YrdC/YwlC family protein [Acetobacterium woodii DSM 1030]
gi|375300886|gb|AFA47020.1| Sua5/YciO/YrdC/YwlC family protein [Acetobacterium woodii DSM 1030]
Length = 352
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 6/171 (3%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW-A 99
A +K G V PT+T+YGL DA N +AI ++ K R + PL + ++++ D+ + A
Sbjct: 27 ASLIKNGGTVVFPTETVYGLGADALNPQAIKKIFAAKGRPDDNPLIVHIADLNDVQRLVA 86
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + L+ PGP+TI+ ++ + E+ + V VR PDH + +K P+
Sbjct: 87 EIPEKAKTLMKVFWPGPLTIIMEKAAVIPTEVTAGLNTVGVRFPDHPIAQAFIKTAGCPI 146
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
A SAN S PS + + + L +DG I+S+ G ST++D++
Sbjct: 147 AAPSANRSGRPSP---TQGKHVLEDLDGRVDGIILSSDAELGLESTVIDMT 194
>gi|422340182|ref|ZP_16421136.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370122|gb|EHG17510.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 217
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 9/201 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ I V D K LL+ Q +KKG ++ PTDT+YGL TN ++IN +Y K R
Sbjct: 6 KINKISDVGDDKWTLLS-QEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAEL----LPGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + ELL +L PG +T++ R EH+ + +
Sbjct: 65 PLIALLSSVDKVEEVAYVSDKNKELLNKLAKAFWPGALTVILKRKEHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E S +E + + S++ ++ID G E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGEASPKSYDELSEVIKSKVDILIDSGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG 219
STI+DL+ + V I+RKG
Sbjct: 185 --ASTIIDLTSD-VPKILRKG 202
>gi|338973357|ref|ZP_08628721.1| YrdC/Sua5 family protein [Bradyrhizobiaceae bacterium SG-6C]
gi|338233400|gb|EGP08526.1| YrdC/Sua5 family protein [Bradyrhizobiaceae bacterium SG-6C]
Length = 360
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+CL+ G +VA PT+T+YGL DATN++A+ LYE K R PL VS++ K A
Sbjct: 53 RCLEDGGLVAFPTETVYGLGADATNARAVAQLYEAKGRPAFNPLIAHVSDLQAARKIARF 112
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
S L PGP+T+V ++ + + +AVR+P H R +L+ P+
Sbjct: 113 DETSLRLAEAFWPGPLTLVLPKATGCPVSDLATAGLETIAVRVPAHPVARDILRAFGKPV 172
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIIS 195
SAN S S T + L ++ +++DGG +S
Sbjct: 173 VAPSANISGHVSPTTAEHVLGDLAGRIDLIVDGGPVS 209
>gi|422734542|ref|ZP_16790830.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1341]
gi|315168546|gb|EFU12563.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1341]
Length = 340
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|229545078|ref|ZP_04433803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322]
gi|229309970|gb|EEN75957.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322]
Length = 340
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN S+ + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|148361313|ref|YP_001252520.1| SUA5/yciO/yrdC family transporter:Sua5/YciO/YrdC/YwlC family
transporter protein [Legionella pneumophila str. Corby]
gi|296108653|ref|YP_003620354.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
gi|148283086|gb|ABQ57174.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
[Legionella pneumophila str. Corby]
gi|295650555|gb|ADG26402.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
Length = 322
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 21/194 (10%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIP 96
L++G VA+PT+T+YGLA N+ AI ++E+K R +N PL + ++ + ++P
Sbjct: 15 LQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVHIASNWDLHDLVEEVP 74
Query: 97 KWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
++A +L + PGP+T+VF+ + + +N + + +A+R PDH ++LL+ +
Sbjct: 75 EYA------HQLAGKFWPGPLTLVFHCKKDQINPLITGGQSTIAIRCPDHPLTQKLLQKL 128
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
+ P+ SAN + S T ++ Q ++DGG R G STIVD + +
Sbjct: 129 NIPVVAPSANPFGKISPTTALHVKQSFNDAELTILDGGRC----RVGIESTIVDATNPDS 184
Query: 213 YSIVRKGVCYDKIL 226
Y I+R G+ +K +
Sbjct: 185 YQILRHGIIDEKTI 198
>gi|293553330|ref|ZP_06673966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039]
gi|425057058|ref|ZP_18460492.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 504]
gi|430820575|ref|ZP_19439202.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0045]
gi|430829297|ref|ZP_19447393.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0269]
gi|431203634|ref|ZP_19500693.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1620]
gi|431381548|ref|ZP_19511150.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1627]
gi|431450017|ref|ZP_19514035.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1630]
gi|431518330|ref|ZP_19516463.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1634]
gi|431744623|ref|ZP_19533491.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2071]
gi|431760809|ref|ZP_19549400.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E3346]
gi|291602554|gb|EFF32770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039]
gi|403041207|gb|EJY52238.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 504]
gi|430439366|gb|ELA49721.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0045]
gi|430481203|gb|ELA58364.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0269]
gi|430571446|gb|ELB10357.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1620]
gi|430581910|gb|ELB20348.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1627]
gi|430585290|gb|ELB23583.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1630]
gi|430585338|gb|ELB23624.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1634]
gi|430605366|gb|ELB42771.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E2071]
gi|430623088|gb|ELB59788.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E3346]
Length = 341
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A R+PD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRMPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|54298977|ref|YP_125346.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris]
gi|397668658|ref|YP_006510195.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
[Legionella pneumophila subsp. pneumophila]
gi|53752762|emb|CAH14197.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris]
gi|395132069|emb|CCD10363.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
[Legionella pneumophila subsp. pneumophila]
Length = 322
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 21/194 (10%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIP 96
L++G VA+PT+T+YGLA N+ AI ++E+K R +N PL + ++ + ++P
Sbjct: 15 LQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVHIASNWDLHDLVEEVP 74
Query: 97 KWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
++A +L + PGP+T+VF+ + + +N + + +A+R PDH ++LLK +
Sbjct: 75 EYA------HQLADKFWPGPLTLVFHCKKDQINPLITGGQSTIAIRCPDHPLTQKLLKKL 128
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
+ P+ SAN + S T ++ Q ++DGG R G STIVD + +
Sbjct: 129 NIPVVAPSANPFGKISPTTALHVKQSFNDAELTILDGGRC----RVGIESTIVDATNPDS 184
Query: 213 YSIVRKGVCYDKIL 226
Y I+R G+ +K +
Sbjct: 185 YQILRHGIIDEKTI 198
>gi|365903578|ref|ZP_09441401.1| SUA5 family translation factor [Lactobacillus malefermentans KCTC
3548]
Length = 342
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 104/186 (55%), Gaps = 10/186 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA LK+G +V+ PT+T+YGL DATN +A+ +Y K R + PL + V+++ + K+A
Sbjct: 14 AAAQLKQGNLVSFPTETVYGLGADATNVEAVKQVYAAKGRPSDNPLIVHVADVQTVEKYA 73
Query: 100 -DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ +L+ PGP+T++F + L+ + + A R+P + L++
Sbjct: 74 LPLSEKAQKLIKTFWPGPLTLIFKLKPGALSSHVTGGLETAAFRMPASEATLSLIREAGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS TL ++ + L +++ ++D G P +FG ST++D+S + +
Sbjct: 134 PLVGPSANTSGKPSPTLAMHVYHDLKGKIAGILDDG----PTKFGVESTVLDMSTDTP-T 188
Query: 215 IVRKGV 220
++R G
Sbjct: 189 VLRPGA 194
>gi|418575561|ref|ZP_13139711.1| putative translation factor [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325963|gb|EHY93091.1| putative translation factor [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 347
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
+ G ++A+PT+T+YGL DA N AI +Y K R + PL + + ++ I + D +
Sbjct: 28 FENGGLIAIPTETVYGLGADARNEAAIKHIYSAKGRPSDNPLIVHIYKVEQIQAFTDKLS 87
Query: 104 VSFELLA-ELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
E+L E PGP++ IV + +L ++ + +AVR+P H RQ+LK +D P+A
Sbjct: 88 KEVEMLMNEFWPGPISFIVPLKKGYLCESVSGGLDSIAVRMPSHPIGRQILKYVDMPIAA 147
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
SAN S PS F+ ++ L IDG + + G ST++D + + + I R G
Sbjct: 148 PSANLSGRPSPTT---FEHVYRDLDGRIDGIVNGDQSEEGLESTVLDCT-QFPFKIARPG 203
>gi|334130209|ref|ZP_08504010.1| hypothetical protein METUNv1_01028 [Methyloversatilis universalis
FAM5]
gi|333444741|gb|EGK72686.1| hypothetical protein METUNv1_01028 [Methyloversatilis universalis
FAM5]
Length = 334
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVS 105
G +VALPT+T+YGL DA N A+ ++E K R + PL + + + + +WA D +
Sbjct: 23 GELVALPTETVYGLGADAMNPAAVRRIFEAKGRPADHPLIVHLPDAEQMTQWARDIPREA 82
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
L PGP+T++ R + + LE+ V +R+P H +LL+ +A SAN
Sbjct: 83 IALAKTFWPGPLTLILKREDDVPLEVTGGQDTVGLRVPGHPLALKLLRAFGGGVAAPSAN 142
Query: 166 ESNE--PSTL--CINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
P+T +EF+ V+DGG P G STI+DLS E I+R G
Sbjct: 143 RFGRISPTTAQHVRDEFRDTLGDALTVLDGG----PCEVGIESTILDLSGEQP-RILRPG 197
Query: 220 -VCYDKILKILHKYHLVEKNT 239
+ ++I ++ + + + +
Sbjct: 198 AISAEQIAAVIGRMPVAKGDA 218
>gi|406994064|gb|EKE13128.1| hypothetical protein ACD_13C00093G0042 [uncultured bacterium]
Length = 355
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
LK G +V PT+TLYG DATN+ A+ L K R + KP +I V +I K+ + +
Sbjct: 19 VLKSGGLVIYPTETLYGAGVDATNASAVQKLTAYKNRPLGKPYSIAVQDIKMAEKYGNIN 78
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
+ +L E LPGP+TI+ L + KV +RI H+ + LL P+ T
Sbjct: 79 KSAKKLFDEFLPGPLTIIVRGKHKLAKGVESEDGKVGIRISSHQLVHDLLVKFGKPITAT 138
Query: 163 SANESNEP-----STLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
SAN S + S + N QK + +++D G + P R ST++D +
Sbjct: 139 SANVSYKKRPYKISDILDNLSQKQIKLIDLIVDAGTL--PTRDPSTVIDTT 187
>gi|335049849|ref|ZP_08542833.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera sp. UPII 199-6]
gi|333762126|gb|EGL39638.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera sp. UPII 199-6]
Length = 348
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 13/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A C+++G +V PT+T+YGL + + A ++E K R + PL + V++ + +
Sbjct: 21 AGACIRQGGLVVFPTETVYGLGANGLDETACRRIFEAKGRPSDNPLILTVADRQGAEQIS 80
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ +L+A PGP+T+V R + + VAVR PDH R L+ P
Sbjct: 81 DHISPLAEKLMARFWPGPLTLVLPRRSCVPDVATGGLDTVAVRCPDHDICRAFLQYAQVP 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + ++ ++IDGG G STIV+ + + +I
Sbjct: 141 VAGPSANLSTRPSPTTAAEALHDMDGRVQMIIDGGAC----HIGVESTIVECTAADEVTI 196
Query: 216 VRKGVCYDKIL-----KILHKYHLVEKNTFP 241
+R G ++L K++ HLV P
Sbjct: 197 LRPGGITPEMLAEVAAKVVLDTHLVSGKGVP 227
>gi|428307183|ref|YP_007144008.1| translation factor SUA5 [Crinalium epipsammum PCC 9333]
gi|428248718|gb|AFZ14498.1| translation factor SUA5 [Crinalium epipsammum PCC 9333]
Length = 219
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
L+ G V+ PTDT+Y + CD + A+ + IK+ +KPL +++I ++A
Sbjct: 22 DALRNGAVMLYPTDTVYAIGCDINSKSAVERVRRIKQLSNDKPLTFLCHSLSNIAQYATV 81
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
++ L+ L+PGP T + ++ + L NP +R+PDH LL +++P+
Sbjct: 82 SDAAYRLMKHLIPGPYTFLLPATKLVPKLVQNPKRKTTGIRVPDHPVCMALLNALENPII 141
Query: 161 LTSA----NESNEP--STLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDL-SEENVY 213
TSA ++ N P S + F +L + V+ID G + P STI+DL SEE V
Sbjct: 142 STSAHLLDDDGNAPTLSMERVQLFDELDKLVDVIIDNG--TEPAMEVSTILDLTSEEPV- 198
Query: 214 SIVRKGVCYDKIL 226
+VRKG+ ++ ++
Sbjct: 199 -MVRKGLGWEAVM 210
>gi|302344113|ref|YP_003808642.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
gi|301640726|gb|ADK86048.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
Length = 203
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 5/188 (2%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ L++G VVA PTDT YGL CD + KA+ L++IK + +KP + ++
Sbjct: 12 PRKIAQVTAALREGGVVAYPTDTSYGLGCDIFSQKALRRLHQIKAQPESKPFSFICPDLK 71
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
D+ +A+ +++ L LLPGP T V S H + V +R+PDH +++
Sbjct: 72 DLSTYANVTNYAYKTLRRLLPGPYTFVLEGSRHAPKMVLTKRKTVGIRVPDHPVCLAIVQ 131
Query: 154 LMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ P+A T+A + + E + +L L +V+DGG P S I + +E
Sbjct: 132 ELGHPIASTTAMDGQGRALNTPWEIESELGHALDLVVDGG--PAPGLLSSVIGLIGDEP- 188
Query: 213 YSIVRKGV 220
I+R+G
Sbjct: 189 -QIIREGA 195
>gi|291515259|emb|CBK64469.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes shahii WAL 8301]
Length = 193
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 98/181 (54%), Gaps = 3/181 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + ++ G ++ PTDT++GL CDAT++ A+ +Y +K+ K + + + I ++
Sbjct: 14 AVRTMRAGGIILYPTDTVWGLGCDATSAAAVERIYRLKRSGNKKSMLVLCASADMIVRYV 73
Query: 100 DTH-TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ ++FE++ EL P+T + + L L P+ + VRIPDH+F R++L+ + P
Sbjct: 74 NKAPGIAFEVM-ELATSPLTAILPGAAGLAENLIPDEGTLGVRIPDHEFCRRMLRALGRP 132
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S E + + + + +++ + V++ P R S+I+ E I+R
Sbjct: 133 IVSTSANISGEATPVGLQDVAREIIDGVDFVVNPRFEGKPTRKASSIIAFGEGGEVKIIR 192
Query: 218 K 218
+
Sbjct: 193 E 193
>gi|239617335|ref|YP_002940657.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506166|gb|ACR79653.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1]
Length = 342
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 14/178 (7%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L AA+ L+KG +VA PT+T+YGL +A ++KA + ++E K R + PL + VS I +
Sbjct: 19 LRAARYLQKGELVAFPTETVYGLGANALDAKAASKIFEAKGRPQDNPLIVHVSSIEMAQE 78
Query: 98 WADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
++ L ELL PGPVTI+F +S + + + V +R P H ++L+++
Sbjct: 79 LVLDDLNDYKWLVELLWPGPVTIIFRKSRRIPDIVTAGLPNVGIRFPSHPVAQKLIEIAG 138
Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGI----ISNPERFG--STIVDLS 208
P+A SAN S PS +EF + +DG I ++ FG STIVDLS
Sbjct: 139 LPIAAPSANLSGRPSP--TDEFHVIED-----MDGRIACMLLAGKTLFGLESTIVDLS 189
>gi|119720716|ref|YP_921211.1| Sua5/YciO/YrdC/YwlC family protein [Thermofilum pendens Hrk 5]
gi|119525836|gb|ABL79208.1| translation factor SUA5 [Thermofilum pendens Hrk 5]
Length = 366
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 6/202 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K+ AA L+KG VVA PT+T+YGL A+ ++++K+R + PL + +S
Sbjct: 26 DAKSIEEAASILRKGGVVAFPTETVYGLGAVYHMRDAVIRVFKVKRRPPDNPLILHISSF 85
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ I A + LAE PGP+T+V ++ + E+ + KVAVR+P H +L
Sbjct: 86 SQIYTLASEVPEAVHRLAEKFWPGPLTVVLPKTSRVPYEVTGGLEKVAVRMPAHNVALRL 145
Query: 152 LKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
++ + P+A SAN S PS Q + + L IDG + + +G ST++DL+
Sbjct: 146 IEAVGDPIAAPSANLSGRPSPTTA---QHVLADLGDEIDGVLDAGETLYGVESTVIDLTA 202
Query: 210 ENVYSIVRKGVCYDKILKILHK 231
+ + V +++ K+L K
Sbjct: 203 DPPVLLRPGAVPLEEVEKVLGK 224
>gi|423484648|ref|ZP_17461337.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6X1-2]
gi|401138109|gb|EJQ45684.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6X1-2]
Length = 346
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + V+ +L+ PGP+TI+ R + ++ + + V VR+PDH L++ +
Sbjct: 84 R--EIPPVAEKLMEHFWPGPLTIILPRKKGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG + ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGG--ATGVGVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|295394651|ref|ZP_06804870.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294972544|gb|EFG48400.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 220
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 106/196 (54%), Gaps = 7/196 (3%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ ++ ++ +PTDT+YG+A DA + + + L + K R + P + V + A+
Sbjct: 23 ARVVRGDGLLVIPTDTVYGIAADAFSPQGVAKLLQAKGRGRDMPPPVLVPRAETVMGLAE 82
Query: 101 THTVS-FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
S EL A PGP+TI+ N L+ +L V +R+PDH+ LL + PL
Sbjct: 83 AVDSSVMELTARFWPGPLTIICNAQPSLHWDLGDTHGTVGLRMPDHEDTLALLSKV-GPL 141
Query: 160 ALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
A++SAN S EP+ + + + Q L ++ + +DGG P STI+D+S +V ++R+
Sbjct: 142 AVSSANLSGEPAAVNVEQAQSMLGDRVDIFLDGG--EAPGGQSSTIIDMS-GSVPRMLRE 198
Query: 219 G-VCYDKILKILHKYH 233
G + +D++ +++
Sbjct: 199 GPISFDELAEVVDGLE 214
>gi|225175847|ref|ZP_03729840.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT
1]
gi|225168771|gb|EEG77572.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT
1]
Length = 355
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G +VA PT+T+YGL +A N A+ ++ K R + PL + V I + A
Sbjct: 27 AGRILAGGGLVAFPTETVYGLGANALNGPAVEKIFNAKGRPSDNPLIVHVDRADKIRELA 86
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
LA+ PGP+T+V + E + E++ + VAVRIPDH LLK P
Sbjct: 87 QNIPPEAWCLAKHFWPGPLTLVLPKQEIVPREVSGGLKTVAVRIPDHPVALALLKTAGVP 146
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T + L ++ V+DGG P G LS EN +V
Sbjct: 147 VAAPSANLSGRPSPTTAGHVLDDLDGRIDAVVDGG----PCGVGVESTVLSIENGQPVVL 202
Query: 218 K--GVCYDKILKILHK 231
+ GV ++I ++L K
Sbjct: 203 RPGGVTPEQITQVLGK 218
>gi|406940200|gb|EKD73029.1| hypothetical protein ACD_45C00478G0006 [uncultured bacterium]
Length = 312
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+ G +VA+PT+T+YGL DATN A+ ++ IK+R ++ PL + + ++ KWA
Sbjct: 8 AVSILRAGGLVAIPTETVYGLGADATNPNALRKIFLIKQRPIDHPLIVHLGSPAEVTKWA 67
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ ++ L+ PGP+T+V ++ H++ + + +RIP H + LL+ S
Sbjct: 68 QNVSPEAWSLINAFWPGPLTLVLQKAPHVHDLITGGQDTIGLRIPAHPIAQALLQEFGSG 127
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S + ++L + ++++GG STIVD+ I+R
Sbjct: 128 IAAPSANLFGRISPTTADAVREELGDAVDLILEGGQCE--VGLESTIVDMRGAQPV-ILR 184
Query: 218 KG-VCYDKILKILHKYHLVEKNTFP 241
G + +I +LH+ +KN P
Sbjct: 185 PGMITATQIEAVLHQSVSAKKNNAP 209
>gi|417002186|ref|ZP_11941575.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479327|gb|EGC82423.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 344
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 8/190 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K AA LK G +VA+PT+T+YGL + + A ++E K R + PL + +S I
Sbjct: 14 DQKIIKKAANLLKDGKLVAIPTETVYGLGANGLDDLACRKIFETKNRPADNPLILHISNI 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ + + L +L PGP+T++F +S+ + + VA+R P K R+++
Sbjct: 74 DMLYNLVEGVSDEARKLFDLWPGPLTMIFKKSKLIPDTVTAGGDTVAIRFPVDKIAREII 133
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
+ P+A SAN S PS T ++ F L ++ +++DGG + G ST++DLSE
Sbjct: 134 SEANLPIAAPSANISGRPSPTNAVDCFFDLNGKIPLIVDGG----ESKIGIESTVIDLSE 189
Query: 210 ENVYSIVRKG 219
+ V +I+R G
Sbjct: 190 D-VPTILRPG 198
>gi|381188725|ref|ZP_09896285.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Flavobacterium frigoris PS1]
gi|379649363|gb|EIA07938.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Flavobacterium frigoris PS1]
Length = 317
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ ++A+PT+T+YGLA +A + A+ ++ IKKR PL + + ++ + A
Sbjct: 9 AAKALQNDDIIAIPTETVYGLAGNAYSENALKKIFAIKKRPYYNPLIVHIKSVSSLSTIA 68
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D T++ +L E PGP+T+V + H++ + VAVR+P+H +L+ +D P
Sbjct: 69 SDVPTMALKLAEEFWPGPLTLVLKKQPHISDLITAGKETVAVRVPNHPIALAVLEKLDFP 128
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
LA SAN S T + F +L V++DGG
Sbjct: 129 LAAPSANPFGSISPTTAGHVFDYFEEELEVILDGG 163
>gi|196249769|ref|ZP_03148465.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16]
gi|196210645|gb|EDY05408.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16]
Length = 345
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G V+A PT+T+YGL DA N+ A+ ++ K R + PL + V+ + A
Sbjct: 24 AAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASRAQVESIA 83
Query: 100 DT-HTVSFELLAELLPGPVTIVF-NRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ V+ L+ PGP+T+V R ++ + ++ VAVR+PDH L++
Sbjct: 84 ASIPPVAKTLMERFWPGPLTLVLPKRDGAVSERVTAGLSTVAVRMPDHPLALALIEASGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
LA SAN S PS T + L +++ VIDGG P G ST++D S E V +
Sbjct: 144 ALAAPSANRSGRPSPTTAAHVLADLNGRIAGVIDGG----PTGVGVESTVLDCSGE-VPT 198
Query: 215 IVRKG 219
I+R G
Sbjct: 199 ILRPG 203
>gi|441472331|emb|CCQ22086.1| Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Listeria monocytogenes]
gi|441475474|emb|CCQ25228.1| Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
[Listeria monocytogenes N53-1]
Length = 186
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G VA PT+T+YGL DATN A+ +YE K R + PL + ++ + ++
Sbjct: 21 AAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDQFV 80
Query: 100 DTHTV-SFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + +L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ +
Sbjct: 81 ASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIGTANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNP 197
P+A SAN S +PS T + + L +++ +IDGG P
Sbjct: 141 PIAAPSANRSGKPSPTTASHVIEDLDGKIAGIIDGGATGVP 181
>gi|333372735|ref|ZP_08464659.1| Sua5/YciO/YrdC/YwlC family protein [Desmospora sp. 8437]
gi|332971797|gb|EGK10745.1| Sua5/YciO/YrdC/YwlC family protein [Desmospora sp. 8437]
Length = 361
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL DAT+ A+ +Y K R + PL + +++ + +W
Sbjct: 32 AAALLREGHLVAFPTETVYGLGADATDPDAVASIYRAKGRPSDNPLIVHLADEQGLSEWV 91
Query: 100 DTHTVSFELLA-ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
LLA PGP+T++ +L ++ + V VRIP H LLK P
Sbjct: 92 REIPEPGRLLARRFWPGPLTLILPHRGNLAPQVTAGLPTVGVRIPSHPVALALLKNCGLP 151
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S +PS T + + L ++ ++DGG+ G ST+VD++
Sbjct: 152 VAAPSANRSGKPSPTRAGHVWTDLGGRIDAILDGGVTG----VGVESTVVDVT 200
>gi|229014495|ref|ZP_04171613.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048]
gi|229064976|ref|ZP_04200274.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603]
gi|229136144|ref|ZP_04264897.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196]
gi|229170033|ref|ZP_04297725.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621]
gi|423369289|ref|ZP_17346720.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD142]
gi|423471489|ref|ZP_17448233.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6O-2]
gi|423490471|ref|ZP_17467153.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BtB2-4]
gi|423496194|ref|ZP_17472838.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus CER057]
gi|423497012|ref|ZP_17473629.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus CER074]
gi|423513228|ref|ZP_17489758.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuA2-1]
gi|423557160|ref|ZP_17533463.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MC67]
gi|423595496|ref|ZP_17571526.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD048]
gi|423597417|ref|ZP_17573417.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD078]
gi|423659823|ref|ZP_17634992.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VDM022]
gi|423670874|ref|ZP_17645903.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VDM034]
gi|423672899|ref|ZP_17647838.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VDM062]
gi|228613458|gb|EEK70591.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621]
gi|228647303|gb|EEL03385.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196]
gi|228716277|gb|EEL67989.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603]
gi|228746845|gb|EEL96730.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048]
gi|401078174|gb|EJP86492.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD142]
gi|401149579|gb|EJQ57047.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus CER057]
gi|401163213|gb|EJQ70563.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus CER074]
gi|401193531|gb|EJR00536.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus MC67]
gi|401221800|gb|EJR28411.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD048]
gi|401238949|gb|EJR45381.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VD078]
gi|401295161|gb|EJS00786.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VDM034]
gi|401303962|gb|EJS09521.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VDM022]
gi|401310999|gb|EJS16307.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus VDM062]
gi|402429234|gb|EJV61322.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BtB2-4]
gi|402431506|gb|EJV63571.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG6O-2]
gi|402445864|gb|EJV77730.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuA2-1]
Length = 346
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + V+ +L+ PGP+TI+ R + ++ + + V VR+PDH L++ +
Sbjct: 84 R--EIPPVAEKLMEHFWPGPLTIILPRKKGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|395242224|ref|ZP_10419223.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus pasteurii CRBIP
24.76]
gi|394480585|emb|CCI85463.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus pasteurii CRBIP
24.76]
Length = 333
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L KG +VA PT+T+YGL ATN KA+ +Y K R + PL + V++ + K+A
Sbjct: 14 AVDLLAKGELVAFPTETVYGLGAIATNEKAVKGVYAAKGRPSDNPLIVTVADEAMMEKYA 73
Query: 100 -DTHTVSFELLAELLPGPVTI-VFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + +L+ + PGP+TI +F + L + + VA R PD + L+ +
Sbjct: 74 KEVPQRAKKLIEKFWPGPLTILLFAKEGALPTAVTGGLKTVAFRCPDDQLTHDLIAKLQF 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEE 210
P+ SAN S +PS T + + L +++ ++DGG P R G STI+DLS E
Sbjct: 134 PIVGPSANTSTKPSPTTAQHVYHDLKGKIAGIVDGG----PTRVGLESTIIDLSVE 185
>gi|416375205|ref|ZP_11683328.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 0003]
gi|357266555|gb|EHJ15165.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 0003]
Length = 217
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 108/190 (56%), Gaps = 10/190 (5%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
L++G ++ PTDT+Y + CD + A+ + ++K+ +KPL S +++I K+A
Sbjct: 23 ALRQGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIAKYAGVE 82
Query: 103 TVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
++ ++ L+PGP T + ++ + L ++P +R+PDH + +L+ +++P+
Sbjct: 83 DEAYRVMKRLIPGPYTFLLPATKAVPKLVMSPKRKSTGIRLPDHPICQAILQGLENPIVS 142
Query: 162 TSA---NESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
TSA +E E TL + + F L +Q+ ++ID + P STI+D++ + SI
Sbjct: 143 TSAHLPDEDGEFPTLGLEKVKLFDILENQVDIIIDNSL--EPGFEVSTILDMTSDPP-SI 199
Query: 216 VRKGVCYDKI 225
+R+G+ ++++
Sbjct: 200 IRQGLGWEEL 209
>gi|300776648|ref|ZP_07086506.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
35910]
gi|300502158|gb|EFK33298.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
35910]
Length = 182
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 100/181 (55%), Gaps = 8/181 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ LK G + PTDT++G+ CDATN +A+N ++EIKKR+ NK + I V + D
Sbjct: 6 EILKSGGTILYPTDTIWGIGCDATNIEAVNKIFEIKKREKNKSMIILVESEKRLQDLVDV 65
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+++E++ +L PVTIV+ L EL + +R+ + F ++L+ ++ PL
Sbjct: 66 PEMAWEII-DLSEKPVTIVYENPRGLPKELLAEDGSIGIRLVKNDFCKKLITKLNRPLVS 124
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF----GSTIVDLSEENVYSIVR 217
TSAN S E S L +F + ++ ++D + + E+ GS+++ + +N ++R
Sbjct: 125 TSANFSGEKSPL---KFSDISQEMIDLVDYAVEEDREKVSKYSGSSVIKIWNDNRIKVLR 181
Query: 218 K 218
+
Sbjct: 182 E 182
>gi|333985935|ref|YP_004515145.1| Sua5/YciO/YrdC/YwlC family protein [Methylomonas methanica MC09]
gi|333809976|gb|AEG02646.1| Sua5/YciO/YrdC/YwlC family protein [Methylomonas methanica MC09]
Length = 322
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 5/189 (2%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
+P++ AA L++G +VA+PT+T+YGL DA N +A+ ++ K R + PL + ++
Sbjct: 7 NPQSIEQAAALLRQGKLVAIPTETVYGLGADAANPEAVAKIFAAKGRPADHPLIVHMAYA 66
Query: 93 TDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
I WA D +++L E PGP+T+V + + L + VA+R+P++ L
Sbjct: 67 LQIKDWAIDIPEAAWQLAREFWPGPLTMVLRKKASVPLAVTGGQDTVALRVPNNPVALWL 126
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
L++ +A SAN S TL + +L + ++DGG S STI+DL++
Sbjct: 127 LRVFGGGIAAPSANRFGRISPTLAQHVADELGDAVDCILDGGPCSV--GLESTIIDLTDS 184
Query: 211 NVYSIVRKG 219
+I+R G
Sbjct: 185 QP-TILRPG 192
>gi|300361414|ref|ZP_07057591.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03]
gi|300354033|gb|EFJ69904.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03]
Length = 334
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 23/212 (10%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
A + LKKG +VA PT+T+YGL ATN KA+ +Y K R + PL + VS+ +
Sbjct: 18 AVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENYV 77
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIV-FNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
++P+ A +L+ PGP+TI+ F + L + + A R PD + L
Sbjct: 78 NEVPERAK------KLIKHFWPGPLTIILFVKEGTLPDAVTGGLPTAAFRCPDDEMTHDL 131
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ + P+ SAN S +PS T + + L +++ +ID G P G STIVDLS
Sbjct: 132 ISELGKPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTEIGLESTIVDLS 187
Query: 209 EENVYSIVRKG-VCYDKILKILHKYHLVEKNT 239
E +++R G + ++I K+L + L+ K T
Sbjct: 188 VETP-TVLRPGEITPEEISKVLGEEVLMNKGT 218
>gi|224369573|ref|YP_002603737.1| hypothetical protein HRM2_24790 [Desulfobacterium autotrophicum
HRM2]
gi|223692290|gb|ACN15573.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 202
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 25 MCSIVKVTDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
M V +P+ L++ L++G ++A PTDT YG+ CD N KAI +Y+IK+R N
Sbjct: 1 MLIYVNPDNPQPRLISQIVDALRQGGIIAYPTDTHYGIGCDIMNKKAIEKVYQIKQRSKN 60
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
+P + +++ I ++A T ++ + LLPGP T + S+ + + +R+
Sbjct: 61 QPFSFICADLKHISEYAKVSTFAYRNMKRLLPGPYTFILQGSKLVPKMMLTKRKTAGIRV 120
Query: 143 PDHKFLRQLLKLMDSPLALTSANESN----EPSTLCINEFQKLWSQLSVVIDGGIISNPE 198
PD+ + K + +P+ TSA + E +L + F + +L +V+DGG + +
Sbjct: 121 PDNAIALAIAKELGNPVLSTSATGPDDRPFEDPSLLHDWFGQ---RLELVVDGGPVPGTD 177
Query: 199 RFGSTIVDLSEENVYSIVRKG 219
S++V L ++ V I+R G
Sbjct: 178 ---SSVVSLIDD-VPEIIRYG 194
>gi|345006364|ref|YP_004809217.1| Sua5/YciO/YrdC/YwlC family protein [halophilic archaeon DL31]
gi|344321990|gb|AEN06844.1| Sua5/YciO/YrdC/YwlC family protein [halophilic archaeon DL31]
Length = 194
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A+ L G +V PTDT+YGL DA ++ ++++K R ++PL++ V ++ +
Sbjct: 8 ASSHLALGALVVYPTDTVYGLGADAIAGDSVERVFKLKGRSRDEPLSMAVPDVEAALEHT 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + E LPGPVT+V R H+ L +V VRIPDH+ +LL+ +P+
Sbjct: 68 RPTDRAEAFMREFLPGPVTVVVEREHHVPDALTAGRDRVGVRIPDHEVALELLEEF-APV 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN + S ++ + ++ + V+D G E ST+VD E+ V I R+
Sbjct: 127 TATSANRTGHASVSHPDDLEPEIREGVGAVVDAGETPGGE---STVVD-PEKGV--IHRR 180
Query: 219 GVCYDKI 225
G D I
Sbjct: 181 GPQADDI 187
>gi|227821231|ref|YP_002825201.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234]
gi|227340230|gb|ACP24448.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234]
Length = 337
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 11/194 (5%)
Query: 31 VTDPKAALLAA-QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
DP A + +A + L +G V+A+PT+T+YGLA DATN A++ +++IK+R PL
Sbjct: 6 AADPAAGITSAVEALGRGDVIAVPTETVYGLAADATNEAAVSQIFDIKRRPGFNPLICHC 65
Query: 90 SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFL 148
S++ + ++A VS L PGP+T+V N + L +T VA+RIP F
Sbjct: 66 SDLEMVSEFATLDPVSLRLAERFWPGPMTLVLNSNPGRLPSVTTAGLTTVAIRIP-MGFS 124
Query: 149 RQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIV 205
L++ PLA SAN S S T + + + +++DGG P + G STI+
Sbjct: 125 NGLIRSYGGPLAAPSANISGRVSATTAAHVESEFGDGVPLILDGG----PTKIGVESTIL 180
Query: 206 DLSEENVYSIVRKG 219
+ EN ++R G
Sbjct: 181 RV-RENGIELLRPG 193
>gi|407796958|ref|ZP_11143908.1| Sua5/YciO/YrdC/YwlC family protein [Salimicrobium sp. MJ3]
gi|407018703|gb|EKE31425.1| Sua5/YciO/YrdC/YwlC family protein [Salimicrobium sp. MJ3]
Length = 335
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L++ VA PT+T+YGL DAT+ +A++ +++ K R + PL + + E + + A
Sbjct: 15 AVEALRQKETVAFPTETVYGLGADATSKEAVSKIFKAKGRPADNPLIVHIGERSQLSAIA 74
Query: 100 DTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTK----VAVRIPDHKFLRQLLKL 154
+ + + E + PGP+T++ N E PNVT + VR+PDH +LL
Sbjct: 75 SSWSETAEKCMDAFWPGPLTVIVPS----NHEAAPNVTSNLDTIGVRMPDHPVALELLSK 130
Query: 155 MDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEEN 211
P+A SAN S +PS T + ++ L +++ ++DGG P G ST+VD + E
Sbjct: 131 AGVPIAAPSANSSGKPSPTTAGHVYEDLNGKITGIVDGG----PTGVGVESTVVDCTSE- 185
Query: 212 VYSIVRKG 219
V I+R G
Sbjct: 186 VPVILRPG 193
>gi|307354113|ref|YP_003895164.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM
11571]
gi|307157346|gb|ADN36726.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM
11571]
Length = 192
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L++ ++ PT+T+YGL CDA + +A++ LYE K R ++KP++I VS++ + A
Sbjct: 8 AVRVLRRDGIIVYPTETVYGLGCDALSDEAVSRLYEAKCRPLSKPVSIAVSDMEMLHAVA 67
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + LPGPVT++ + + L + +R+PD+ ++++ SP+
Sbjct: 68 IIDEAEEKFIKRFLPGPVTVIVRAKKCIPPVLTGGTGLIGIRMPDNDIAIEIIEKFGSPI 127
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII-SNPERFGSTIVDLSEENVYSIVRK 218
TSAN S + S + +++ ++ +ID G + NP ST+VDL IVR
Sbjct: 128 TSTSANLSGDISPVTVSQVNVIYDH---IIDSGTLPGNP----STVVDLVNRK---IVRA 177
Query: 219 GVCYDKI 225
G +++
Sbjct: 178 GAQIEEV 184
>gi|163943013|ref|YP_001647897.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis
KBAB4]
gi|423519990|ref|ZP_17496471.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuA2-4]
gi|163865210|gb|ABY46269.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis
KBAB4]
gi|401157257|gb|EJQ64657.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus HuA2-4]
Length = 346
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIP 96
AA+ L++ VA PT+T+YGL +A + +AI ++E K R + PL + + S++ I
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + V+ +L+ PGP+TI+ R + ++ + + V VR+PDH L++ +
Sbjct: 84 R--EIPPVAEKLMEHFWPGPLTIILPRKKGISERVTAGLNTVGVRMPDHPVALALIEEAN 141
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E V +I
Sbjct: 142 VPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE-VPTI 198
Query: 216 VRKG 219
+R G
Sbjct: 199 LRPG 202
>gi|289191931|ref|YP_003457872.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp.
FS406-22]
gi|288938381|gb|ADC69136.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp.
FS406-22]
Length = 216
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 90/150 (60%), Gaps = 12/150 (8%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++ TDTLYG++ +A + KA+ +YEIK+RD +KPL+ICV + ++I K+A + ++
Sbjct: 32 GKIIICGTDTLYGISANALDEKAVKKVYEIKRRDFSKPLSICVKDKSEIEKYAYVNDLAK 91
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALTS 163
+++ + LPG +TI+ + + P++ V +RIPD +R+L + PL TS
Sbjct: 92 KIIDKFLPGALTIILKKKPVI-----PDIVAKDYVGIRIPDEPIIRELSIV---PLTTTS 143
Query: 164 ANESNEPSTLCINEF-QKLWSQLSVVIDGG 192
AN S + S +NE +++ + V+D G
Sbjct: 144 ANISGKESPTSVNEIDEEILKNVDYVVDIG 173
>gi|339504281|ref|YP_004691701.1| Sua5/YciO/YrdC/YwlC family protein [Roseobacter litoralis Och 149]
gi|338758274|gb|AEI94738.1| Sua5/YciO/YrdC/YwlC family protein [Roseobacter litoralis Och 149]
Length = 314
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 18/207 (8%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P AA L+ G +VA PT+T+YGL DA N +A+ ++E K R PL + V + T
Sbjct: 13 PDGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVAAIFEAKGRPSFNPLIVHVLDAT 72
Query: 94 DIPK---WADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAVRIPDHKFL 148
+ W+DT + +L + PGP+++V +E L ++ ++ VA+R+P H
Sbjct: 73 HARRFCHWSDT---AEKLASAFWPGPLSLVLPLTEGHGLSSLVSAGLSTVALRVPAHPTA 129
Query: 149 RQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIV 205
R LL+ D P+A SAN S + S T + L ++ ++D G P R G STIV
Sbjct: 130 RALLRAFDGPVAAPSANPSGKISPTTAQHVSDGLGMRVGAILDDG----PCRVGLESTIV 185
Query: 206 DLSEENVYSIVR-KGVCYDKILKILHK 231
L + S++R G+ ++I ++L +
Sbjct: 186 GL--DGPASLLRPGGLPAEEIERVLGQ 210
>gi|312871989|ref|ZP_07732071.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
2062A-h1]
gi|311092566|gb|EFQ50928.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
2062A-h1]
Length = 331
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP AD +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIP--ADAQ----KLIDHFWPGPLTLILFVKEGTLPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IQTLTRPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++L K L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLDKKVLLNKGT 214
>gi|119715988|ref|YP_922953.1| translation factor SUA5 [Nocardioides sp. JS614]
gi|119536649|gb|ABL81266.1| translation factor SUA5 [Nocardioides sp. JS614]
Length = 219
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DT 101
+++G +V LPTDT+YG+ DA + A+ L K R + P + VS T + A
Sbjct: 23 AVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAVRV 82
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ L+ PGP+T+V ++ L +L VAVR+PDH R++L+ PLA+
Sbjct: 83 PGYARALVEAFWPGPLTLVCHQQSSLQWDLGDTRGTVAVRMPDHDVAREILERT-GPLAV 141
Query: 162 TSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGV 220
+SAN++ P+ ++ + L ++V++DGG E STIVD++ + R +
Sbjct: 142 SSANKTGMPAATDADQAEDMLGDDVAVIVDGGPAPGGE--ASTIVDVTGAQGRVLRRGAL 199
Query: 221 CYDKILKILH 230
+++ ++L
Sbjct: 200 SLERLNEVLE 209
>gi|406961694|gb|EKD88327.1| hypothetical protein ACD_34C00607G0002 [uncultured bacterium]
Length = 209
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 6/200 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
+P++ A + G +VA PTDT+YGL D + I L+E K RD NK +AI + +
Sbjct: 10 NPESISSALSLFRDGEIVAFPTDTVYGLGTDPFQASGIIKLFEAKGRDSNKAIAILIGSV 69
Query: 93 TDIPKWADTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
D T ++ L A PG +T++ R L EL N ++ +R+P+H ++
Sbjct: 70 EQASLVTDHMTDMAIRLCAAFWPGGLTVIVPRKNTLP-ELISNTDRIGIRMPNHPVALEM 128
Query: 152 LKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEE 210
LK PLA TSAN S +P + + + +L +++ +++DGG ST++D S
Sbjct: 129 LKTF-GPLATTSANLSGKPDAVTAKDVYDQLSNRIPLILDGGKCQG--GVPSTVIDCSGS 185
Query: 211 NVYSIVRKGVCYDKILKILH 230
+ + ++I K+L
Sbjct: 186 EPILLREGPISIEQIYKVLE 205
>gi|269836450|ref|YP_003318678.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM
20745]
gi|269785713|gb|ACZ37856.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM
20745]
Length = 216
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 4/211 (1%)
Query: 26 CSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPL 85
++ DP AA L +G ++ PTDT+YG+A + +A+ LY +K R +++P+
Sbjct: 7 ARLIPGDDPGVPAAAADVLARGGLIVFPTDTVYGVAAAVDHPEAVARLYHVKGRPLDRPI 66
Query: 86 AICVSEITDIPKW-ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPD 144
+ VS++ +P+ + + +LL PG +T+ + L E+ + +V +R+PD
Sbjct: 67 PVLVSDLDQVPRLTGEVDPLVLDLLQRFWPGALTVAVPAAPWLPREIVRDTGRVGLRMPD 126
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGST 203
H ++ LA TSAN S EP T E L ++ ++IDGG P ST
Sbjct: 127 HPLALAIIAAAGGALATTSANRSGEPETRTAAEADAALGDRVDLIIDGG--PAPGGVPST 184
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHKYHL 234
++ + + R + ++I++ ++ L
Sbjct: 185 VLVVDGRRLTVTRRGALDPEEIVRAFPEFTL 215
>gi|365869423|ref|ZP_09408970.1| hypothetical protein MMAS_13710 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|414582238|ref|ZP_11439378.1| hypothetical protein MA5S1215_1648 [Mycobacterium abscessus
5S-1215]
gi|420876706|ref|ZP_15340078.1| hypothetical protein MA5S0304_0422 [Mycobacterium abscessus
5S-0304]
gi|420882038|ref|ZP_15345402.1| hypothetical protein MA5S0421_0679 [Mycobacterium abscessus
5S-0421]
gi|420888200|ref|ZP_15351554.1| hypothetical protein MA5S0422_1410 [Mycobacterium abscessus
5S-0422]
gi|420893830|ref|ZP_15357172.1| hypothetical protein MA5S0708_0903 [Mycobacterium abscessus
5S-0708]
gi|420898633|ref|ZP_15361969.1| hypothetical protein MA5S0817_0455 [Mycobacterium abscessus
5S-0817]
gi|420904084|ref|ZP_15367405.1| hypothetical protein MA5S1212_0846 [Mycobacterium abscessus
5S-1212]
gi|420970859|ref|ZP_15434056.1| hypothetical protein MA5S0921_1155 [Mycobacterium abscessus
5S-0921]
gi|421048283|ref|ZP_15511279.1| hypothetical protein MMCCUG48898_1268 [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998880|gb|EHM20086.1| hypothetical protein MMAS_13710 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392090383|gb|EIU16196.1| hypothetical protein MA5S0304_0422 [Mycobacterium abscessus
5S-0304]
gi|392091093|gb|EIU16904.1| hypothetical protein MA5S0421_0679 [Mycobacterium abscessus
5S-0421]
gi|392092760|gb|EIU18565.1| hypothetical protein MA5S0422_1410 [Mycobacterium abscessus
5S-0422]
gi|392102420|gb|EIU28207.1| hypothetical protein MA5S0708_0903 [Mycobacterium abscessus
5S-0708]
gi|392107874|gb|EIU33656.1| hypothetical protein MA5S0817_0455 [Mycobacterium abscessus
5S-0817]
gi|392109342|gb|EIU35120.1| hypothetical protein MA5S1212_0846 [Mycobacterium abscessus
5S-1212]
gi|392117390|gb|EIU43158.1| hypothetical protein MA5S1215_1648 [Mycobacterium abscessus
5S-1215]
gi|392171831|gb|EIU97504.1| hypothetical protein MA5S0921_1155 [Mycobacterium abscessus
5S-0921]
gi|392242448|gb|EIV67935.1| hypothetical protein MMCCUG48898_1268 [Mycobacterium massiliense
CCUG 48898]
Length = 226
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 25/202 (12%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +V +PTDT+YGL CDA +S A+ L K R + P+ + V W
Sbjct: 20 AVSALKAGELVVMPTDTVYGLGCDAFDSSAVTALLAAKGRGRDMPVGVLVG------SW- 72
Query: 100 DTHTV----------SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
HT+ + EL+ PGP++I+ + L+ +L V +R+P H
Sbjct: 73 --HTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAI 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + P+A++SAN S P+ L E + +L +++V +DGG STIVDL+
Sbjct: 131 ELLRAV-GPMAVSSANVSGRPAALTAAEARSQLDDKVAVYLDGG--QAELGAASTIVDLT 187
Query: 209 EENVYSIVRKG-VCYDKILKIL 229
+ IVR+G + ++I++++
Sbjct: 188 -GSAPVIVREGPISREQIVEVI 208
>gi|296242927|ref|YP_003650414.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486]
gi|296095511|gb|ADG91462.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486]
Length = 356
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL + +A+ ++++K R + PL + VS + + K A
Sbjct: 20 AAGVLRRGGLVAFPTETVYGLGALVWDERAVTRIFQVKGRPSDNPLIVHVSSVEMVEKVA 79
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ L+ + PGP+TIV RSE + + + VAVR+P H L++ P
Sbjct: 80 SRIPEDAYRLMEKAWPGPLTIVLPRSERVPRTVTAGLDTVAVRMPSHPVALSLIRETGEP 139
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+A SAN S PS T + + L ++ V++D G
Sbjct: 140 VAAPSANLSGRPSPTTGYHVIRDLMGRVEVILDAG 174
>gi|295425484|ref|ZP_06818177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM
11664]
gi|295064823|gb|EFG55738.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM
11664]
Length = 337
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 9/174 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L KG +VA PT+T+YGL ATN K++ +Y K R + PL + VS+ + ++A
Sbjct: 18 AVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTVSDEDMMRRYA 77
Query: 100 -DTHTVSFELLAELLPGPVTI-VFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + +L+ PGP+TI +F + L + + VA R PD K L+K +
Sbjct: 78 KEVPERAEKLIKHFWPGPLTILLFVKPGSLPDAVTGGLDTVAFRCPDDKLTHTLIKKLGY 137
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
P+ SAN S +PS T + + L +++ +IDGG P R G STI+DLS
Sbjct: 138 PIVGPSANTSTKPSPTTAQHVYHDLKGKIAGIIDGG----PTRVGLESTIIDLS 187
>gi|255283090|ref|ZP_05347645.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM
14469]
gi|255266392|gb|EET59597.1| Sua5/YciO/YrdC/YwlC family protein [Marvinbryantia formatexigens
DSM 14469]
Length = 348
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 9/199 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D A A + L+ G +VA PT+T+YGL +A + A +Y K R + PL + ++ +
Sbjct: 13 DEAAIAQAGRILQAGGLVAFPTETVYGLGANALDETASGKIYRAKGRPSDNPLIVHIARM 72
Query: 93 TDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
D+ + A E LAE PGP+T++F + + + + VAVR+P+H L
Sbjct: 73 EDLYRIAAVVPEKAERLAEKFWPGPLTMIFPKKDCVPYTTTGGLETVAVRMPEHPVALAL 132
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+K +A SAN S PS T + + + ++ ++IDGG + G STIVD+S
Sbjct: 133 IKAGGGFVAAPSANSSGRPSPTRAQHVAEDMTGKIEMIIDGGSVG----IGVESTIVDMS 188
Query: 209 EENVYSIVRKGVCYDKILK 227
+V I+R G ++L+
Sbjct: 189 -GDVPMILRPGYINREMLE 206
>gi|325911759|ref|ZP_08174166.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D]
gi|325476525|gb|EGC79684.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D]
Length = 331
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AAQ L +G +VA PT+T+YGL DATN +A+ +Y K R + PL + V++ +
Sbjct: 14 AAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVADEAMMKKYV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
T+IP A +L+ PGP+T I+F + L + + A R P +L
Sbjct: 74 TEIPADAQ------KLIDHFWPGPLTLILFVKEGTLPDAVTGGLPTAAFRCPQDPLTNEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
++ + P+ SAN S +PS T + + L +++ +ID G P + G STI+DLS
Sbjct: 128 IQTLTRPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTKIGLESTIIDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + + D++ ++L K L+ K T
Sbjct: 184 VDQPVVLRPGEITPDELSEVLDKKVLLNKGT 214
>gi|404417806|ref|ZP_10999592.1| translation factor [Staphylococcus arlettae CVD059]
gi|403489818|gb|EJY95377.1| translation factor [Staphylococcus arlettae CVD059]
Length = 347
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 8/190 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-D 100
Q +G ++ALPT+T+YGL +A + A+ +Y+ K R + PL I + + + + D
Sbjct: 26 QIYHQGGLIALPTETVYGLGANALDDNAVKKIYQAKGRPSDNPLIIHIHSLEQLTDFTTD 85
Query: 101 THTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ L+ PGP++ + +S +L +++ + +AVR+P H+ RQ+L+L+D P+
Sbjct: 86 ITDEVYLLMKHFWPGPISFILPLKSGYLCSKVSGGLNSIAVRMPSHRIGRQILQLVDLPI 145
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
A SAN S +PS +F ++ L+ IDG I + G ST++D + + I R
Sbjct: 146 AAPSANLSGKPSP---TQFDHVYQDLNGRIDGIINGDQSEEGLESTVLDCT-SFPFKIAR 201
Query: 218 KGVCYDKILK 227
G K+++
Sbjct: 202 PGSITQKMIE 211
>gi|358636483|dbj|BAL23780.1| putative translation factor [Azoarcus sp. KH32C]
Length = 357
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L+ G +V +PT+T+YGLA DA N +A+ ++ K R + PL + + + + + +WA
Sbjct: 21 AADQLRAGELVGMPTETVYGLAADALNVEAVGKIFSAKGRPADHPLIVHLPDASHLTRWA 80
Query: 100 DTHTVSFELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ E LA PGP T++ R + + + V +R+PDH LL+ D
Sbjct: 81 --RAIPKEALALAKAFWPGPFTMILKREDDVPDAVTGGQDTVGLRVPDHPVALALLRAFD 138
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
S +A SAN S T + ++L ++++V++GG STI+DLS + I
Sbjct: 139 SGIAAPSANRFGRISPTTAAHVREELGDKVALVLEGGACQV--GIESTILDLSRDTPV-I 195
Query: 216 VRKG-VCYDKILKILHK 231
+R G + D I +++ +
Sbjct: 196 LRPGAISADDIARVIGR 212
>gi|116493076|ref|YP_804811.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745]
gi|421894489|ref|ZP_16324977.1| SUA5 domain protein [Pediococcus pentosaceus IE-3]
gi|116103226|gb|ABJ68369.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745]
gi|385272579|emb|CCG90349.1| SUA5 domain protein [Pediococcus pentosaceus IE-3]
Length = 340
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 14/212 (6%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AAQ +K G +V+ PT+T+YGL DATN +A+ +Y K R + PL + V++ T++ K+
Sbjct: 12 VAAQAIKAGELVSFPTETVYGLGADATNPEAVKKVYAAKGRPSDNPLIVHVADQTEVAKF 71
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A+ S +L+ + PGP+TI+ + LN + + A R P + L++
Sbjct: 72 ANIDDKSKKLMDQFWPGPLTIILPIKKGALNSIVTGGLDTAAFRNPATQVTIDLIRAAGV 131
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + L +++ V+D G + G ST++D+S S
Sbjct: 132 PLVGPSANTSGKPSPTKPEHVLHDLDGKIAGVLDDGETT----IGVESTVLDMS-STTPS 186
Query: 215 IVRKGVCYDKIL-----KILHKYHLVEKNTFP 241
I+R G ++ L ++ +H V K+ P
Sbjct: 187 ILRPGAITEQALAPLIGEVQTDHHKVGKDEVP 218
>gi|448312437|ref|ZP_21502182.1| Sua5/YciO/YrdC/YwlC family protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445601655|gb|ELY55641.1| Sua5/YciO/YrdC/YwlC family protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 194
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGLA A ++ A+ ++E+K RD +KP+++ V + +
Sbjct: 7 AAAAIEAGELVVYPTETVYGLAGAALDADAVERVFEVKGRDRSKPISVAVPSVPSALQHV 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+A LPGPVT++ R E + L +V VR+PDH L + +P+
Sbjct: 67 RATERERRFMATFLPGPVTVLCRRREDVPDALTAGNDRVGVRVPDHDLALALCERAGTPI 126
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
TSAN S S + + ++ +VV+DGG E ST+VD+S E ++ R+
Sbjct: 127 TSTSANVSGRESVRRLEDLDPEIRDAAAVVLDGGRTEGTE---STVVDVSTETIH---RR 180
Query: 219 GVCYDKILK 227
G D+I +
Sbjct: 181 GALADEIER 189
>gi|373465768|ref|ZP_09557212.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus kisonensis F0435]
gi|371759370|gb|EHO48108.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus kisonensis F0435]
Length = 345
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G +VA PT+T+YGL DATN A+ +Y+ K R + PL + VS+++ + K+
Sbjct: 19 AAKLIQQGELVAFPTETVYGLGADATNVAAVKKVYQAKGRPSDNPLIVTVSKVSMVEKYV 78
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
T + +L+ + PG +T++F + L+ + +T A R P+++ L+
Sbjct: 79 QPLSTDAKKLIDQFWPGSLTMIFKLKPNALSKTVTGGLTTAAFRFPNNQLTLDLITQAGV 138
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+ SAN S +PS T + + L +++ ++D G P G ST++D+S + S
Sbjct: 139 PIVGPSANTSGKPSPTTAQHVYHDLNGKIAAIVDDG----PTTVGVESTVLDMSVDTP-S 193
Query: 215 IVRKG-VCYDKILKILHK 231
I+R G V + I ++H+
Sbjct: 194 ILRPGAVTKEDIEAVIHR 211
>gi|148284357|ref|YP_001248447.1| translation factor protein [Orientia tsutsugamushi str. Boryong]
gi|146739796|emb|CAM79671.1| putative translation factor protein [Orientia tsutsugamushi str.
Boryong]
Length = 322
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AAQ +++G +V PT+T+YG+ DATN A +Y+IK R +N PL I VS I
Sbjct: 14 VAAQFIEQGKLVIFPTETVYGIGADATNDNACQSIYKIKNRPMNNPLIIHVSNIQAAQTI 73
Query: 99 ADTHTVSFELLAELLPGPVTIV--FNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ ++ + LA L PGP+++V N+S ++ N+ VA+RIP HK LL+L
Sbjct: 74 GIFNNLAIK-LATLWPGPISLVVPLNQSAGISRTATANLDTVAIRIPSHKVALMLLQLTQ 132
Query: 157 SPLALTSANES----------------NEPSTLCINEFQKLWSQLSVVID 190
P+A SAN S N P + Q + S +ID
Sbjct: 133 KPIAAPSANPSGYLSPTTYQHANIHFQNSPDIFILKGAQSTYGLESTIID 182
>gi|453054348|gb|EMF01801.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 312
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G +VALPT+T+YGL +A + A+ +++ K R PL + + + +W +
Sbjct: 2 LRAGGLVALPTETVYGLGANAEDPAAVAQIFQAKGRPPTHPLIVHIGGADQLDEWVEEVP 61
Query: 104 VSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
+ LLAE PGP+T+V R + LE + VAVR+PDH LL +
Sbjct: 62 ATARLLAEHFWPGPLTLVLRRGRRVPLEATGGLETVAVRVPDHPVALALLAAFGGGITAP 121
Query: 163 SANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR-K 218
SAN S + + +L + V+DGG P G STIVD++ +V I+R
Sbjct: 122 SANRFGSVSPTTADHVRAELGDAVGFVLDGG----PCGVGVESTIVDVT-GDVPGILRPG 176
Query: 219 GVCYDKILKILHK 231
GV + + +L +
Sbjct: 177 GVTREDLEAVLGR 189
>gi|212640537|ref|YP_002317057.1| translation factor [Anoxybacillus flavithermus WK1]
gi|212562017|gb|ACJ35072.1| Putative translation factor (SUA5) [Anoxybacillus flavithermus WK1]
Length = 355
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL +A ++ A+ ++ K R + PL + ++ + A
Sbjct: 32 AAAYLQRGELVAFPTETVYGLGANAMSTAAVENIFVAKGRPSDNPLIVHIATTEQLHDIA 91
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D V++ L+ PGP+T+V + E ++ + + VAVR+P+H L+K P
Sbjct: 92 CDIPPVAYTLIEHFWPGPLTLVLPKKEVVSPRVTAGLNTVAVRMPNHPIALALIKASGLP 151
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S PS T + L +++ ++DGG P G ST++D + + +I
Sbjct: 152 IAAPSANRSGRPSPTTAKHVLDDLNGRIAAIVDGG----PTGVGVESTVIDCT-TTIPTI 206
Query: 216 VR-KGVCYDKILKILH----KYHLVEKNTFP 241
+R GV + I +++ LVEK P
Sbjct: 207 LRPGGVTKEDIEQVIGVVDIDRALVEKEAVP 237
>gi|440300704|gb|ELP93151.1| sua5, putative [Entamoeba invadens IP1]
Length = 358
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ ++ G +VA PT+T+YGL D + ++IN ++ +K R + PL +S++ + + A
Sbjct: 35 AAEIIQTGGLVAFPTETVYGLGADVFHPESINQIFRVKGRPNDNPLITHISDLKMLDRLA 94
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +L+A+ PG +TI+F R++ + E+ + V VR+P H L++L ++P
Sbjct: 95 AFVSDDAKKLIAKFWPGALTIIFPRAKGVPDEVTAGLDTVGVRMPSHPIAYNLIRLANTP 154
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+A SAN S +PS TL + L ++ ++IDGG
Sbjct: 155 IAAPSANLSTKPSPTLGSHCVDDLNGRVEMIIDGG 189
>gi|448664345|ref|ZP_21684148.1| DNA binding protein [Haloarcula amylolytica JCM 13557]
gi|445774990|gb|EMA26004.1| DNA binding protein [Haloarcula amylolytica JCM 13557]
Length = 194
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 6/186 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL DA ++ A+ ++E K R+ +KP+++ V ++ ++
Sbjct: 7 AASAVRNGELVVYPTETVYGLGADALDAAAVERVFEAKGRERDKPVSMAVPDVESAREYT 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E LPGPVT+V R + + L +V VR+PDH +LL PL
Sbjct: 67 RPSDRELAFMREFLPGPVTVVVERRDAVPDVLVAGRDRVGVRVPDHDLALELLAET-GPL 125
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S PS I++ + + +VV+D G GST+V++ ++ R+G
Sbjct: 126 TATSANISGNPSARTIDDLDAIRERAAVVLDAGETDGG--TGSTVVNVDSGTIH---RRG 180
Query: 220 VCYDKI 225
D +
Sbjct: 181 AHADAV 186
>gi|452960474|gb|EME65796.1| hypothetical protein G352_08312 [Rhodococcus ruber BKS 20-38]
Length = 220
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
Query: 33 DPKAALLAAQ--CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
D +AA L A LK G +V +PTDT+YGLA DA +S A+ L K R + P+ + V
Sbjct: 11 DSRAAGLTAAKGALKAGRLVVVPTDTVYGLAADAFDSDAVTSLLRAKGRGRDMPVPVLVG 70
Query: 91 EITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
I +T + EL+ PG +++V +++ L +L V +R+P H +
Sbjct: 71 SWNTIDGLVNTVRPQARELIRAFWPGGLSLVVHQAPSLAWDLGDTRGTVMLRMPLHPVVL 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + PLA++SAN S P ++E + +L SV +DGG + STIVDL+
Sbjct: 131 ELLREV-GPLAVSSANVSGRPPATTVDEARAQLGGSASVYLDGGPAEHA--VASTIVDLT 187
Query: 209 EENVYSIVRKGVCYDKILKILHK 231
+ + V + I ++L +
Sbjct: 188 ADRPRVLREGAVAVEDIAEVLGE 210
>gi|296134388|ref|YP_003641635.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola potens JR]
gi|296032966|gb|ADG83734.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola potens JR]
Length = 361
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 8/206 (3%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP+ AA+ +K+G VVA PT+T+YGL +A + A+ ++ K R + PL + ++E
Sbjct: 15 DPETISQAAEIIKRGGVVAFPTETVYGLGANALDGPAVQKIFAAKGRPSDNPLIVHIAEF 74
Query: 93 TDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+ + ++ E+ PGP+TI+ + + + + V VR+P H L
Sbjct: 75 SQLEMLVTEVPLTARRAMEVFWPGPLTIIMPCRDDIPRTVTGGLKTVGVRMPKHPVALAL 134
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+K P+A SAN S +PS T + L ++ VIDGG P + G ST++D++
Sbjct: 135 IKAAKLPIAAPSANSSGKPSPTEARHVMYDLAGKIDAVIDGG----PAQVGVESTVLDMT 190
Query: 209 EENVYSIVRKGVCYDKILKILHKYHL 234
+ + GV +++ IL L
Sbjct: 191 GDTPVILRPGGVTREQLEAILGHVDL 216
>gi|407279030|ref|ZP_11107500.1| hypothetical protein RhP14_21136 [Rhodococcus sp. P14]
Length = 220
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
Query: 33 DPKAALLAAQ--CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
D +AA L A LK G +V +PTDT+YGLA DA +S A+ L K R + P+ + V
Sbjct: 11 DSRAAGLTAAKGALKAGRLVVVPTDTVYGLAADAFDSDAVTGLLRAKGRGRDMPVPVLVG 70
Query: 91 EITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
I +T + EL+ PG +++V +++ L +L V +R+P H +
Sbjct: 71 SWNTIDGLVNTVRPQARELIRAFWPGGLSLVVHQAPSLAWDLGDTRGTVMLRMPLHPVVL 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + PLA++SAN S P ++E + +L SV +DGG + STIVDL+
Sbjct: 131 ELLREV-GPLAVSSANVSGRPPATTVDEARAQLGGSASVYLDGGPAEHA--VASTIVDLT 187
Query: 209 EENVYSIVRKGVCYDKILKILHK 231
+ + V + I ++L +
Sbjct: 188 ADRPRVLREGAVAVEDIAEVLGE 210
>gi|399031724|ref|ZP_10731594.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium sp. CF136]
gi|398069909|gb|EJL61236.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium sp. CF136]
Length = 206
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 25 MCSIVKV--TDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +K+ P A +A + L+ G +V PTDT+YGL CD TNS+A+ + +IK
Sbjct: 1 MSEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALERIAKIKGVK 60
Query: 81 VNKP--LAIC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
+ K IC +S ++D + DT T F++L LPGP T + + +L E T
Sbjct: 61 LEKANFSFICHDLSNLSDYVRQIDTAT--FKILKRALPGPYTFILPGNNNLPKEFKKKTT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
V +R+PD+ ++++ + +P+ TS + ++ + F+K + + +VIDGG
Sbjct: 119 -VGIRVPDNNIALEIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDLVIDGGY 177
Query: 194 ISNPERFGSTIVDLSEENVYSIVRKG 219
N GSTI+DLSE IVR+G
Sbjct: 178 GDN---VGSTIIDLSEHEPV-IVREG 199
>gi|168700740|ref|ZP_02733017.1| translation factor SUA5 [Gemmata obscuriglobus UQM 2246]
Length = 331
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 9/207 (4%)
Query: 27 SIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
S++KV T+P++ ++ AA ++ G +VA PT+T+YGL + ++ A+ ++E K R
Sbjct: 4 SVLKVDPTNPESDVIGRAAAVVRSGGLVAFPTETVYGLGANGLSAAAVAGIFEAKGRPST 63
Query: 83 KPLAICVSEITDIPKWADTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVR 141
PL + VS+ +++ A + + L A PGP+T+V + + + + VAVR
Sbjct: 64 NPLILHVSDASEVLNVAAAWPATAQTLAARFWPGPLTLVVPKRDSVPNIVTAGGPTVAVR 123
Query: 142 IPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERF 200
P+H R L++ PLA SAN S E S T + + L ++++V+DGG S
Sbjct: 124 CPNHAVARALIRAAGVPLAAPSANRSTELSPTRAEHVLKGLNGRIAIVLDGGPCSG--GL 181
Query: 201 GSTIVDLSEENVYSIVRKGVCYDKILK 227
ST+VD++ E + ++R G+ +L+
Sbjct: 182 ESTVVDVTGE-IPRVLRPGLITVPMLE 207
>gi|301063995|ref|ZP_07204460.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
gi|300441906|gb|EFK06206.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
Length = 215
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 5/189 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA LK G +VA PT++ YGLA DA N AI L++IK+R +P+ + + ++ + +
Sbjct: 22 AAAILKSGGLVAYPTESYYGLAADAANEAAIRRLFQIKRRKPGEPILLLIPDVGSLKRCV 81
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + L+ PG +TIVF + L++ L +K+ +R+ H L+K M SP
Sbjct: 82 AHVPEAAKRLMDAFWPGGLTIVFEAQKDLSMLLTAGTSKIGIRLSSHPLATALVKAMGSP 141
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S EP F L + ++DGG P ST++D++ + +I+R
Sbjct: 142 ITGTSANVSGEPPCRTPRGVFNALGKGVDKILDGG--ETPGEKPSTVLDVTSYPL-TILR 198
Query: 218 KGVCYDKIL 226
+G+ K+L
Sbjct: 199 EGIISKKML 207
>gi|229020544|ref|ZP_04177289.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273]
gi|229026765|ref|ZP_04183097.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272]
gi|423388378|ref|ZP_17365604.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG1X1-3]
gi|423416764|ref|ZP_17393853.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG3X2-1]
gi|228734488|gb|EEL85150.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272]
gi|228740764|gb|EEL91017.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273]
gi|401109326|gb|EJQ17251.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG3X2-1]
gi|401643566|gb|EJS61263.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus BAG1X1-3]
Length = 346
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 17/188 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA+ L++ VA PT+T+YGL +A + +AI ++ K R + PL + + +
Sbjct: 24 AARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFAAKGRPSDNPLIVHIGTKSQLDGIV 83
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+IP A+ +L+ PGP+TI+ R E ++ + + V VR+PDH L+
Sbjct: 84 REIPPVAE------KLMEHFWPGPLTIILPRKEGISERVTAGLNTVGVRMPDHPVALALI 137
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
+ + P+A SAN S PS TL + ++ L +++ ++DGG ST++D + E
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVYEDLNGKIAGIVDGGATGV--GVESTVIDCTSE- 194
Query: 212 VYSIVRKG 219
V +I+R G
Sbjct: 195 VPTILRPG 202
>gi|407472717|ref|YP_006787117.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium acidurici 9a]
gi|407049225|gb|AFS77270.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium acidurici 9a]
Length = 332
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 110/194 (56%), Gaps = 4/194 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A+Q +K+G +VA PT+T+YGL +A + A++ +++ K R + PL + + ++ +
Sbjct: 4 ASQVIKEGGLVAFPTETVYGLGANALDENAVSKIFKAKGRPSDNPLIVHICDVNQLDDLV 63
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ ++L E PG +T++F +S+ + L+ + + VA+R+PD+K +L+K + P
Sbjct: 64 EEIPERAKILMEKFWPGSLTLLFKKSQLVPLKTSGGLDTVAIRMPDNKIALELIKQSNLP 123
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S +PS T + + L ++ V++DGG + ST++D+S E +
Sbjct: 124 IAAPSANTSGKPSPTNPSHVMEDLEGKIDVLVDGG--NTGVGLESTVLDISTEIPVILRP 181
Query: 218 KGVCYDKILKILHK 231
G+ + +L I K
Sbjct: 182 GGITLEDLLLIFPK 195
>gi|395791337|ref|ZP_10470795.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella alsatica IBS 382]
gi|395408700|gb|EJF75310.1| Sua5/YciO/YrdC/YwlC family protein [Bartonella alsatica IBS 382]
Length = 321
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 16/200 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VALPT+T+YGLA DATN KA++ ++ KKR PL VS I ++
Sbjct: 15 AVALLKQGGLVALPTETVYGLAGDATNGKAVSSIFSTKKRPQFNPLIAHVSSIKMAERYV 74
Query: 100 DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVT----KVAVRIPDHKFLRQLLKL 154
+ +S L+ PGP+T+V R++H ++P T +AVR P+ F ++++
Sbjct: 75 EIDFLSRRLMEIFWPGPLTLVLPLRAQH---NIHPLTTCGLDTLAVRFPNSCFA-EIIQC 130
Query: 155 MDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEEN 211
PLA SAN+S S T L + +++DGG + G STI+ + +E+
Sbjct: 131 FGRPLAAPSANQSGRLSPTSAEAVLASLGETVPLILDGGFC----KIGIESTIIKVCDES 186
Query: 212 VYSIVRKGVCYDKILKILHK 231
+Y + G+ ++I +++ K
Sbjct: 187 IYLLRPGGLAAEEIEEVVGK 206
>gi|320528641|ref|ZP_08029794.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204]
gi|320131007|gb|EFW23584.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204]
Length = 199
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
LKK V+++PTDT+YG+ + +A L +K+R + K + +++ I + A+ +
Sbjct: 16 LKKDGVISVPTDTVYGVCSQVFSHQAEENLRNVKRRPLTKAFPVMCADLAQIQEIAEVNE 75
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+ +++ +PGP+T++ R + +NL N+ +A+R+ L +++K + P+ +TS
Sbjct: 76 RAKKVIEGFMPGPITVILKRKDGVNLS-QENLDTIAIRMATSNTLAKIIKGLGRPIFMTS 134
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
AN+S EP+ ++E +K L +++G + FG STIVD +++ + +I+R G
Sbjct: 135 ANQSGEPTCTSLDEIEKSCPDLDGMVEGDV-----SFGEASTIVDCTKKEL-AILRPG 186
>gi|429204921|ref|ZP_19196202.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus saerimneri 30a]
gi|428146783|gb|EKW99018.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus saerimneri 30a]
Length = 343
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 17/223 (7%)
Query: 28 IVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI 87
+ K+ P AAQ L+ G ++A PT+T+YGL DATN +A+ +Y K R + PL +
Sbjct: 3 MTKIYQPDEVDQAAQELRLGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPLIV 62
Query: 88 CVSEITDIPKW-ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDH 145
+S + ++ A+ + + +L+A+ PG +T+VF + L+ + + A R+P
Sbjct: 63 TISSVAMAEQYIAEIPSAARKLMAKFWPGSLTMVFKIKPGSLSKTVTGGLKTAAFRMPQE 122
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--S 202
+L++ PL SAN S +PS T + F L +++ ++D G P + G S
Sbjct: 123 PTTLRLIEAAGVPLVGPSANTSGKPSPTTAQHVFNDLEGRIAGIVDDG----PTKVGVES 178
Query: 203 TIVDLSEENVYSIVRKG-VCYDKILKIL------HKYHLVEKN 238
TI+D+S V +I+R G V ++I +L ++H+ +K
Sbjct: 179 TILDMSVP-VPTILRPGAVTVEEIEAVLGMEVVADRHHVGQKE 220
>gi|422417023|ref|ZP_16493980.1| protein Sua5 [Listeria innocua FSL J1-023]
gi|313622340|gb|EFR92826.1| protein Sua5 [Listeria innocua FSL J1-023]
Length = 345
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ L+ G VA PT+T+YGL DATN AI +Y K R + PL + +++ + ++
Sbjct: 21 AAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQFI 80
Query: 99 ADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
A + +L+ PGP+T++ + + L ++ ++ V VR+P+H +L+ +
Sbjct: 81 ASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVSAGLSTVGVRMPEHPVSLELIATANI 140
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + + L +++ +IDGG P G ST++D S +
Sbjct: 141 PIAAPSANRSGKPSPTTAEHVIEDLDGEVAGIIDGG----PTGVGLESTVIDCSLDVPII 196
Query: 215 IVRKGVCYDKILKILHKYHL 234
+ G+ ++I +++ L
Sbjct: 197 LRPGGITKEQIEQVIGTVDL 216
>gi|430823862|ref|ZP_19442431.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0120]
gi|430866943|ref|ZP_19482169.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1574]
gi|430441895|gb|ELA51966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0120]
gi|430550993|gb|ELA90763.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1574]
Length = 341
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A R+PD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDILPSVVTGGLSTAAFRMPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|339448696|ref|ZP_08652252.1| SUA5 family translation factor [Lactobacillus fructivorans KCTC
3543]
Length = 337
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
K+ P AA LKKG +V+ PT+T+YGL DATN A+ +Y+ K R + PL +
Sbjct: 3 TKIFTPDQIQAAAAELKKGNLVSFPTETVYGLGADATNVSAVKKVYKAKGRPSDNPLIVH 62
Query: 89 VSEITDIPKWADTHTVSF-ELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHK 146
V+++ + K+A + +L+ PGP+TI+ + L E+ + A R P+ +
Sbjct: 63 VADVETVEKYAQPLDENVKKLMKTFWPGPLTIILKLKPGALAKEVTGGLDTAAFRNPNKQ 122
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
L++ PL SAN S +PS TL + + L +++ ++D G FG ST
Sbjct: 123 STLNLIQAAGVPLVGPSANTSGKPSPTLAKHVYHDLNGKIAGILDDGATD----FGVEST 178
Query: 204 IVDLSEENVYSIVRKG-VCYDKILKIL 229
++D+S + +I+R G V D+I +++
Sbjct: 179 VIDMSTDKP-AILRPGAVTVDQIERVI 204
>gi|225570088|ref|ZP_03779113.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM
15053]
gi|225161558|gb|EEG74177.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM
15053]
Length = 350
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G +VA PT+T+YGL DA + +A +Y K R + PL + ++ + D+ K A
Sbjct: 21 AGDILKRGGLVAFPTETVYGLGADALSEEAAAKIYAAKGRPSDNPLIVHITNMGDLEKVA 80
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + ++ + PGP+T++F++ + + + VAVR+P H+ R+++
Sbjct: 81 EKIPAEAVKVAGKYWPGPLTMIFHKKDIVPYGTTGGLDTVAVRMPSHEIAREVIDAGGGF 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S PS T + + + ++ +++DGG P G STI+D++
Sbjct: 141 IAAPSANTSGRPSPTTAQHVKEDMDGRIEMIVDGG----PVEIGVESTILDMT 189
>gi|73662077|ref|YP_300858.1| translation factor [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494592|dbj|BAE17913.1| putative translation factor [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 347
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
+ G ++A+PT+T+YGL DA N AI +Y K R + PL + + ++ I + D +
Sbjct: 28 FENGGLIAIPTETVYGLGADARNEAAIKHIYSAKGRPSDNPLIVHIYKVEQIQAFTDKLS 87
Query: 104 VSFELLA-ELLPGPVT-IVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
E+L E PGP++ IV + +L ++ + +AVR+P H RQ+LK +D P+A
Sbjct: 88 KEVEMLMNEFWPGPISFIVPLKKGYLCESVSGGLDSIAVRMPSHPIGRQILKYVDMPIAA 147
Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVD 206
SAN S PS F+ ++ L IDG + + G ST++D
Sbjct: 148 PSANLSGRPSPTT---FEHVYRDLDGRIDGIVNGDQSEEGLESTVLD 191
>gi|56475496|ref|YP_157085.1| translation factor [Aromatoleum aromaticum EbN1]
gi|56311539|emb|CAI06184.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1]
Length = 351
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 10/195 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L G +V +PT+T+YGLA DA N A+ ++ K R + PL + + + + +WA
Sbjct: 18 AAGLLHAGELVGMPTETVYGLAADALNVAAVGKIFAAKGRPADHPLIVHLPDAGHLARWA 77
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +F L PGP+T++ R + L V +R+PDH LL+ DS
Sbjct: 78 REIPDDAFALARAFWPGPLTLILKRQHSVPDALTGGQDTVGLRVPDHPVALALLQTFDSG 137
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S T + Q+L ++++++DGG P G STI+DLS + I
Sbjct: 138 IAAPSANRFGRISPTTAEHVRQELGDKIALILDGG----PCVVGIESTILDLSRDTP-QI 192
Query: 216 VRKG-VCYDKILKIL 229
+R G + + I +++
Sbjct: 193 LRPGAISAEDIARVI 207
>gi|334364285|ref|ZP_08513277.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5]
gi|313159480|gb|EFR58843.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5]
Length = 193
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAICVSEITDIPKW 98
A + +K G ++ PTDT++GL CDATN++A+ +Y++K+ + K L +C S +
Sbjct: 14 AVRVMKAGGIILYPTDTVWGLGCDATNAEAVERIYKLKRSENKKSMLVLCASADMVVRYV 73
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++FE++ EL P+T + + + L P + VRIPDH+F R++L+ + P
Sbjct: 74 NKAPGIAFEVM-ELATSPLTAILPGAAGVAENLIPEERTLGVRIPDHEFCRRILRGLGRP 132
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S E + + E + + + V++ P + S+I+ E I+R
Sbjct: 133 VVSTSANISGEATPAGLAEVSREIIDGVDFVVNPRFEGKPTKKASSIIAFGEGGEVKIIR 192
Query: 218 K 218
+
Sbjct: 193 E 193
>gi|308274797|emb|CBX31396.1| Uncharacterized protein yciO [uncultured Desulfobacterium sp.]
Length = 201
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 17/196 (8%)
Query: 33 DPKAALLAA--QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
+P+ L++ LKK V+A PTDT YG+ CD N KAI +Y +K+R+ N P + S
Sbjct: 9 NPQKRLISKVIDILKKDGVIAYPTDTYYGIGCDIMNKKAIEKIYLLKQREKNSPFSFMCS 68
Query: 91 EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
+ +I +A +++ + LLPGP T V S+ + + N +R+P++
Sbjct: 69 GLKNISDYAKVSNYAYKTMKRLLPGPYTFVLEGSKLVPKIMLTNRKTAGIRVPNNIICLA 128
Query: 151 LLKLMDSPLALTSANES-----NEPSTLCINEFQKLWSQLSVVIDGG-IISNPERFGSTI 204
L++ + +P+ TSA + PS I+E+ K +++++VIDGG + P S I
Sbjct: 129 LVEELGNPIITTSATMPDGTVFDNPS--LIHEYYK--TRINLVIDGGPVPGQPSSVVSLI 184
Query: 205 VDLSEENVYSIVRKGV 220
D+ E ++R+G+
Sbjct: 185 NDIPE-----VIRQGI 195
>gi|390947206|ref|YP_006410966.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes finegoldii DSM 17242]
gi|390423775|gb|AFL78281.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes finegoldii DSM 17242]
Length = 193
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAICVSEITDIPKW 98
A + +K G ++ PTDT++GL CDATN++A+ +Y++K+ + K L +C S +
Sbjct: 14 AVRVMKAGGIILYPTDTVWGLGCDATNAEAVERIYKLKRSENKKSMLMLCASADMVVRYV 73
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++FE++ EL P+T + + + L P + VRIPDH+F R++L+ + P
Sbjct: 74 NKAPGIAFEVM-ELATSPLTAILPGAAGVAENLIPEERTLGVRIPDHEFCRRILRGLGRP 132
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S E + + E + + + V++ P + S+I+ E I+R
Sbjct: 133 VVSTSANISGEATPAGLAEVSREIIDGVDFVVNPRFEGKPTKKASSIIAFGEGGEVKIIR 192
Query: 218 K 218
+
Sbjct: 193 E 193
>gi|397665592|ref|YP_006507130.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
[Legionella pneumophila subsp. pneumophila]
gi|395129003|emb|CCD07224.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
[Legionella pneumophila subsp. pneumophila]
Length = 322
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 22/212 (10%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIP 96
L++G VA+PT+T+YGLA N+ AI ++E+K R +N PL + ++ + ++P
Sbjct: 15 LQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVHIASNWDLHDLVEEVP 74
Query: 97 KWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
++A +L + PGP+T+VF+ + + +N + + +A+R PDH ++LL+ +
Sbjct: 75 EYA------HQLADKFWPGPLTLVFHCKKDQINPLITGGQSTIAIRCPDHPLTQKLLQKL 128
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
+ P+ SAN + S T ++ Q ++DGG R G STIVD +
Sbjct: 129 NIPVVAPSANPFGKISPTTALHVKQSFNDTELTILDGGRC----RVGIESTIVDATNPGS 184
Query: 213 YSIVRKGVCYDK-ILKILHKYHLVEKNTFPIP 243
Y I+R G+ +K I + + L +KN +P
Sbjct: 185 YQILRHGIIDEKTIAETIAIGCLTQKNDIRVP 216
>gi|218779903|ref|YP_002431221.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218761287|gb|ACL03753.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 214
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 12/197 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK+G VV PT LYGLA A++ +A+ ++ IK R +KPL I V I +
Sbjct: 20 AVRILKEGGVVVFPTTGLYGLAAKASDPQAVAEVFRIKGRPDDKPLLILVDSIDQVKPLV 79
Query: 100 DTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
S LL E L PG +T+VF S+ L L K+ +R+ H R L+K + P
Sbjct: 80 REVPESGRLLMEKLWPGGITLVFCASDLLPPSLLGGKKKIGIRMAAHPVARALVKGLGEP 139
Query: 159 LALTSANESNEPSTLCINEFQKL----WSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
+ TSAN S EP +F++L + + +D G ++ GST+VD++E+
Sbjct: 140 ITGTSANLSGEPGA---GDFRQLSLAVLERTPLALDAGKLAG--GAGSTVVDVTEDPPL- 193
Query: 215 IVRKGVC-YDKILKILH 230
I+R+G +KI L
Sbjct: 194 ILRQGAAPKEKIFNALK 210
>gi|225419868|ref|ZP_03762171.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme
DSM 15981]
gi|225041492|gb|EEG51738.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme
DSM 15981]
Length = 360
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L AA+ L++G +VA PT+T+YGL +A + A +YE K R + PL V++ D+
Sbjct: 20 LEAAEILREGGLVAFPTETVYGLGANALDEAAARKIYEAKGRPSDNPLIAHVADPEDVEA 79
Query: 98 WAD-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ +L+ PGP+T++F +S + + VA+R+P +L+ L
Sbjct: 80 LVEYIPENGRKLMEAFWPGPLTMIFPKSPAVPYGTTGGLDTVAIRMPSDPVANRLIALAG 139
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
P+A SAN S PS T + +Q + ++ ++IDGG P G STIVD+S +
Sbjct: 140 VPVAAPSANTSGRPSPTTADHVWQDMNGRIDMIIDGG----PVGIGVESTIVDVS-CRIP 194
Query: 214 SIVRKGVCYDKILK 227
+++R G ++L+
Sbjct: 195 TVLRPGAITMEMLR 208
>gi|395244716|ref|ZP_10421670.1| Methylase of polypeptide chain release factor [Lactobacillus
hominis CRBIP 24.179]
gi|394482922|emb|CCI82678.1| Methylase of polypeptide chain release factor [Lactobacillus
hominis CRBIP 24.179]
Length = 332
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
A + LKKG +VA PT+T+YGL ATN KA+ +Y+ K R + PL + VS+ +
Sbjct: 14 AVELLKKGELVAFPTETVYGLGALATNEKAVKGVYQAKGRPSDNPLIVTVSDEEMMSRFV 73
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+++P+ A +L+ PGP+TI+ N + L + + A R P +L
Sbjct: 74 SEVPERAK------KLIKHFWPGPLTIILNVKKGTLPDAVTGGLPTAAFRCPKDDLTHEL 127
Query: 152 LKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+ +D+P+ SAN S +PS T + + L +++ +ID G P G STIVDLS
Sbjct: 128 IAKLDNPIVGPSANTSTKPSPTTAEHVYHDLKGKIAGIIDNG----PTAIGLESTIVDLS 183
Query: 209 EENVYSIVRKGVCYDKILKILHKYHLVEKNT 239
+ + V +I ++L + L+ K T
Sbjct: 184 VDKPIVLRPGEVTPQEISQVLGQEVLMNKGT 214
>gi|325982712|ref|YP_004295114.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
gi|325532231|gb|ADZ26952.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
Length = 346
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ L+ G VA PT+T+YGL D TN AI+ +Y+IK+R + PL + + I+ + WA
Sbjct: 24 AAQILRTGGTVAFPTETVYGLGADVTNPIAIDKIYKIKQRPTHHPLIVHIGNISHLHYWA 83
Query: 100 DT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM--D 156
+++L PGP+T++ RS+ + + V +R P H LL+ + +
Sbjct: 84 KAIPDSAWKLAHHFWPGPLTLILPRSDRIPDNVTGGQDTVGIRFPAHPVALALLRALGPE 143
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
LA SAN S TL + Q+L + + +++DGG
Sbjct: 144 KALAAPSANRFGRISPTLAAHVHQELGNVVDMILDGG 180
>gi|398347348|ref|ZP_10532051.1| hypothetical protein Lbro5_09034 [Leptospira broomii str. 5399]
Length = 316
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 23 SKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
SK S DP LAA+ L++G +V PT+T+YGL D+ N A +Y+IK R +
Sbjct: 2 SKSKSTTFTKDPS---LAAKILRQGGIVLFPTETVYGLGVDSRNLSACLEIYKIKNRPAD 58
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRI 142
PL + ++ I + AD + ++ + +PGP+TI+ + + ++ +AVR+
Sbjct: 59 NPLIVHLANPEQIAEIADITEDGYRIIRQFMPGPITIILRKKDESVYST--GLSTIAVRV 116
Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG- 201
P HK ++L P++ SAN S PS I ++ + ++D + + G
Sbjct: 117 PAHKLCAEMLSDFGGPVSAPSANLSGRPS---ITRYEDAVEEFDGLVDLILQGDEPTIGL 173
Query: 202 -STIVDLS 208
ST+VDLS
Sbjct: 174 ESTVVDLS 181
>gi|160903205|ref|YP_001568786.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95]
gi|160360849|gb|ABX32463.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95]
Length = 344
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 7/183 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AAQ +K+ V PT+T+YGL + + A+ ++E K R + PL + VS + ++
Sbjct: 21 AAQAIKEDKTVVFPTETVYGLGANGLSENAVRKIFEAKGRPYDNPLILHVSNVRSFLEYT 80
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
E + LLPGP+T V + E + + +A+R+P H +L++ + P+
Sbjct: 81 YISYALLEKIERLLPGPITFVLKKREVVPDIVTAGKDTLAIRMPAHPVALKLIEYAEVPI 140
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIV 216
A SAN S +PS T+ + + + ++ +I GG + FG STI+DL++ + I+
Sbjct: 141 AAPSANISGKPSPTMSEHVLKDMLGKVDYIIIGGKV----EFGVESTIIDLTQGKIPIIL 196
Query: 217 RKG 219
R G
Sbjct: 197 RPG 199
>gi|158312866|ref|YP_001505374.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec]
gi|158108271|gb|ABW10468.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec]
Length = 216
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 7/188 (3%)
Query: 35 KAALLAA-QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
KA L AA + +G +V LPTDTLYG+ DA N A+ L K R N P+ + V
Sbjct: 13 KAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGRNMPVPVLVGSWR 72
Query: 94 DIPKWADTHTVSF-ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ A+ T +L+ PG +T+V N + L +L VAVR+P H +LL
Sbjct: 73 TLDGLAEQVTGHIRDLVRAFWPGGLTLVVNHAPSLRWDLGDARGTVAVRMPLHPVAIELL 132
Query: 153 KLMDSPLALTSANESNE-PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
P+A++SAN S P+T ++ +L +V +DGG + P STIVD +
Sbjct: 133 GRT-GPMAVSSANISGRPPATSAVDAVAQLGGAAAVYLDGG--TTPVGTASTIVDCTGP- 188
Query: 212 VYSIVRKG 219
V ++VR+G
Sbjct: 189 VPTVVREG 196
>gi|383753170|ref|YP_005432073.1| putative translation factor SUA5 family protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365222|dbj|BAL82050.1| putative translation factor SUA5 family protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 353
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 10/212 (4%)
Query: 21 LPSKMCSIVKVTDPKAAL-LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKR 79
+ ++ I +T K AL A + +++G VVA PT+T+YGL + ++ A +Y+ K R
Sbjct: 1 MQTRCIRIDNITAGKEALHFAGELIRQGEVVAFPTETVYGLGANGLDAAACRKIYQAKGR 60
Query: 80 DVNKPLAICVSEITDIPKWADTHTVSFE-LLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
+ PL + V+ + I + A E L+A PGP+T++ R + ++ ++ V
Sbjct: 61 PSDNPLILHVANRSMIDQVAARIPEKAEKLIAAFCPGPITLILPRKAIVPEQITGGLSTV 120
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNP 197
VR+P+H R L+ P+A SAN S PS T + + ++ +++DGG
Sbjct: 121 GVRMPEHDVARALIAAAGVPIAAPSANISGRPSPTTAESVLVDMEGKIPMILDGGACD-- 178
Query: 198 ERFG--STIVDLSEENVYSIVRKGVCYDKILK 227
FG STIVD + E I+R G ++L+
Sbjct: 179 --FGVESTIVDATGEKAV-ILRPGAITKEMLE 207
>gi|302669642|ref|YP_003829602.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus
B316]
gi|302394115|gb|ADL33020.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus
B316]
Length = 340
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 5/190 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A Q ++ G +VA PT+T+YGL DA N + +Y K R + PL + V+ + D+
Sbjct: 12 AGQIIRDGGLVAFPTETVYGLGGDALNPMSSKKIYAAKGRPSDNPLIVHVANMDDLAGIV 71
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ LA+ PGP+T++ N+++ + E + VA+R+P++K +L++
Sbjct: 72 KEVPEAARKLADAFWPGPLTMIMNKNDKVPYETTGGLDTVAIRMPNNKIALELIRQSGGY 131
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T+ + L ++ ++IDGG + STIVDL+ V I+R
Sbjct: 132 IAAPSANTSGRPSPTVARYCVEDLSGKIEMIIDGGQVGI--GLESTIVDLTSP-VPMILR 188
Query: 218 KGVCYDKILK 227
G ++LK
Sbjct: 189 PGYITAQMLK 198
>gi|254302246|ref|ZP_04969604.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322438|gb|EDK87688.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 217
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 9/201 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ I V D K LL+ Q +KKG ++ PTDT+YGL TN ++IN +Y K R
Sbjct: 6 KINKISDVGDDKWTLLS-QEIKKGSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFTS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAEL----LPGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + ELL +L PG +T++ R EH+ + +
Sbjct: 65 PLIALLSSVDKVEEVAYVSDKNKELLDKLAKAFWPGALTVILKRKEHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIP+ +++ L LA TSAN S E + +E + + S++ ++ID G E
Sbjct: 125 VRIPNLDLAIKIIDLAGGILATTSANISGEATPKSYDELSEAIKSKVDILIDSGECKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG 219
STI+DL+ + V I+RKG
Sbjct: 185 --ASTIIDLTSD-VPKILRKG 202
>gi|261208265|ref|ZP_05922938.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6]
gi|289565645|ref|ZP_06446091.1| translation factor SUA5 [Enterococcus faecium D344SRF]
gi|294615327|ref|ZP_06695202.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636]
gi|430826708|ref|ZP_19444884.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0164]
gi|430850528|ref|ZP_19468288.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1185]
gi|430897232|ref|ZP_19484660.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1575]
gi|431765724|ref|ZP_19554230.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4215]
gi|260077522|gb|EEW65240.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6]
gi|289162613|gb|EFD10467.1| translation factor SUA5 [Enterococcus faecium D344SRF]
gi|291591830|gb|EFF23464.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636]
gi|430444833|gb|ELA54644.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0164]
gi|430535396|gb|ELA75804.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1185]
gi|430555124|gb|ELA94681.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1575]
gi|430627835|gb|ELB64307.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E4215]
Length = 341
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK G +VA PT+T+YGL +A ++ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A R+PD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRMPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+ V
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPAVAP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|448680169|ref|ZP_21690608.1| DNA binding protein [Haloarcula argentinensis DSM 12282]
gi|445769817|gb|EMA20890.1| DNA binding protein [Haloarcula argentinensis DSM 12282]
Length = 194
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 6/186 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA ++ G +V PT+T+YGL DA ++ A+ ++E K R+ +KP+++ V ++ ++
Sbjct: 7 AATAVRNGELVVYPTETVYGLGADALDAAAVERVFEAKGRERDKPVSMAVPDVESAREYT 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E LPGPVT+V R + + L +V VR+PDH +LL PL
Sbjct: 67 RLSDRELAFMREFLPGPVTVVVERRDAVPDVLVAGRDRVGVRVPDHDLALELLAET-GPL 125
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN S PS I++ + + +VV+D G GST+V++ ++ R+G
Sbjct: 126 TATSANISGNPSARTIDDLDAIRERAAVVLDAGETDGG--TGSTVVNVDSGTIH---RRG 180
Query: 220 VCYDKI 225
D +
Sbjct: 181 ARADAV 186
>gi|320353909|ref|YP_004195248.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
gi|320122411|gb|ADW17957.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
Length = 211
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L G VVA PT+T YGLA D N KA+ L++IK+R P+ + VS + +
Sbjct: 15 AAAVLLSGGVVAFPTETYYGLAVDPFNQKALERLFQIKRRARELPILVLVSSHEQVRRLV 74
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + L E PGP+T+V+ + L N V +R ++ +L+ + P
Sbjct: 75 EEIPAIYNCLIEAFWPGPLTLVYPARSSVPNRLTGNTGTVGIRHSPNETANRLIDVFGGP 134
Query: 159 LALTSANESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVDL 207
+ TSAN S P+ + +E ++++ +++ +++DGG P GST+V L
Sbjct: 135 ITATSANRSGSPAAVTADEVERIFDTEVDLILDGG--HTPGGSGSTLVGL 182
>gi|405372146|ref|ZP_11027410.1| YrdC/Sua5 family protein [Chondromyces apiculatus DSM 436]
gi|397088519|gb|EJJ19500.1| YrdC/Sua5 family protein [Myxococcus sp. (contaminant ex DSM 436)]
Length = 310
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 8/194 (4%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+ G VVALPT+T+YGL+ +A + A+ ++ IK R PL + ++ + + WA
Sbjct: 2 ELLRHGGVVALPTETVYGLSANAEDELAVRRVFAIKGRPATHPLIVHIAGVEHLGAWARE 61
Query: 102 HTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
+ LAE PGP+T+V R+ + VA+R+P+H ++L+ + LA
Sbjct: 62 VPEAARKLAEAFWPGPLTLVLPRTARATDAITGGQDTVALRVPNHPVALEVLRKLGGGLA 121
Query: 161 LTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVR 217
SAN + S T + + L S + ++DGG P G STIVDLS E +
Sbjct: 122 APSANRFGKVSPTTAEHVREDLGSDVDFILDGG----PCTVGVESTIVDLSSEAPAILRP 177
Query: 218 KGVCYDKILKILHK 231
G+ + + ++L +
Sbjct: 178 GGLAAEDVERVLGR 191
>gi|338529882|ref|YP_004663216.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus fulvus HW-1]
gi|337255978|gb|AEI62138.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus fulvus HW-1]
Length = 308
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L++G VVALPT+T+YGL+ +A + A+ ++ IK R PL + + + + WA
Sbjct: 2 LRRGGVVALPTETVYGLSANAEDELAVRRVFAIKGRPATHPLIVHIPGVEHLGAWAHEVP 61
Query: 104 VSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
+ LAE PGP+T+V R+ + VA+R+P+H +L+ + LA
Sbjct: 62 EAARKLAEAFWPGPLTLVLKRTARATDAVTGGQDTVALRVPNHPVALAVLRRLGGGLAAP 121
Query: 163 SANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
SAN + S T + + L + +V+DGG P G STIVDLS E + G
Sbjct: 122 SANRFGKVSPTTAEHVREDLGGDVDLVLDGG----PCTVGVESTIVDLSSEEPAILRPGG 177
Query: 220 VCYDKILKILHK 231
+ + + ++L +
Sbjct: 178 LAAEDVERVLGR 189
>gi|422933768|ref|ZP_16966543.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339891326|gb|EGQ80320.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 217
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 9/201 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K+ I ++D K LL+ Q +KKG ++ PTDT+YGL TN ++IN +Y K R +
Sbjct: 6 KIDRISDISDDKWTLLS-QEIKKGSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSS 64
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAEL----LPGPVTIVFNRSEHLNLELNPNVTKVA 139
PL +S + + + A + LL +L PG +T++ R EH+ + +
Sbjct: 65 PLIALLSSVDKVEEVAYVSDKNKNLLKKLAKAFWPGALTVILKRKEHIPSIMVSGGDTIG 124
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPE 198
VRIPD +++ L LA TSAN S E + +E + + S++ ++ID G E
Sbjct: 125 VRIPDLDLAIKIIDLAGGILATTSANISGEATPKSYDELSETIKSKVDILIDSGKCKLGE 184
Query: 199 RFGSTIVDLSEENVYSIVRKG 219
STI+DL+ + V I+RKG
Sbjct: 185 --ASTIIDLTSD-VPKILRKG 202
>gi|294617197|ref|ZP_06696849.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679]
gi|431682626|ref|ZP_19524589.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1904]
gi|291596542|gb|EFF27783.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679]
gi|430598532|gb|ELB36269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1904]
Length = 341
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ LK G +VA PT+T+YGL +A ++ ++ +K R + PL + V+ + ++
Sbjct: 14 AAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPLIVHVASFEQVKEYV 73
Query: 100 DT-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
D H + +++ PGP+T++F + + L + ++ A R+PD+K ++++L
Sbjct: 74 DNFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRMPDNKKTLEVIELSGV 133
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
PL SAN S +PS T + + L +++ +ID G R G ST++DLS+ V
Sbjct: 134 PLVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPAVAP 189
Query: 215 -IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 190 MILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|253995512|ref|YP_003047576.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
gi|253982191|gb|ACT47049.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
Length = 323
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 3/182 (1%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH- 102
LK G VVA+PT+T+YGLA DATN A+ ++ IK+R + PL + + ++ + WA
Sbjct: 12 LKNGGVVAIPTETVYGLAADATNDSALKQIFAIKQRPADHPLIVHIGAMSQVQDWATVFP 71
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
V+ +L + PGP+T+V H++ + + VA+R+P+H LL +A
Sbjct: 72 EVARDLASAFWPGPLTLVLPAQPHVSRVVRGDEPTVALRVPNHPVALALLTQGGLSVAAP 131
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCY 222
SAN + S + V+DGG STIV ++ + + ++R G+
Sbjct: 132 SANLFTQLSPTTAAHVEAGLGASISVLDGGACQV--GIESTIVSVTADGQWQLLRPGMIS 189
Query: 223 DK 224
++
Sbjct: 190 EQ 191
>gi|430751986|ref|YP_007214894.1| Sua5/YciO/YrdC/YwlC family protein [Thermobacillus composti KWC4]
gi|430735951|gb|AGA59896.1| Sua5/YciO/YrdC/YwlC family protein [Thermobacillus composti KWC4]
Length = 348
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 17/205 (8%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
D A AA+ L++G +VA PT+T+YGL DA N +A+ ++E K R + PL + +++
Sbjct: 10 ADETAVAEAARTLREGGIVAFPTETVYGLGADARNPQAVRQVFEAKGRPSDNPLIVHIAD 69
Query: 92 ITDIPKWADTHTVSF-----ELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDH 145
+ D + F L+ PGP+TIV R ++ + VAVR+P H
Sbjct: 70 REQL----DELVLPFGGIPARLMEAFWPGPLTIVLPVRPGAAAPQVTAGLDTVAVRMPAH 125
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--S 202
+L+ P+A SAN S PS TL + + L ++ V+DGG P G S
Sbjct: 126 PVALRLIAAAGCPVAAPSANRSGRPSPTLAAHVMEDLAGRIDGVVDGG----PAEVGLES 181
Query: 203 TIVDLSEENVYSIVRKGVCYDKILK 227
T+V + ++ + + GV + + +
Sbjct: 182 TVVMVEDKRIRVLRPGGVTREALAE 206
>gi|28493400|ref|NP_787561.1| hypothetical protein TWT433 [Tropheryma whipplei str. Twist]
gi|28572489|ref|NP_789269.1| hypothetical protein TW335 [Tropheryma whipplei TW08/27]
gi|28410621|emb|CAD67007.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28476441|gb|AAO44530.1| unknown [Tropheryma whipplei str. Twist]
Length = 225
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 99/197 (50%), Gaps = 19/197 (9%)
Query: 33 DPKAALLAA-QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
DP +A AA + + G V+ +PTDT+YGLA DA +A+ L EIK R P+ + E
Sbjct: 10 DPLSAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPPVLVGSIE 69
Query: 92 ----ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
I D+ + L PGP+T+V L VAVRIP H F
Sbjct: 70 TFQAIVDV-----LPEPALALAKRFWPGPLTLVLRTRPGLLWG-----DTVAVRIPRHSF 119
Query: 148 LRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVD 206
L QLL + PLA++SAN S L + + L + ++ IDG I NP+R S+IVD
Sbjct: 120 LLQLLDEI-GPLAVSSANISGRRPALSVRSARGSLRDKPAMYIDGDRIDNPDRVPSSIVD 178
Query: 207 LSE--ENVYSIVRKGVC 221
L++ E+ + +GV
Sbjct: 179 LTDFCEDSAGRIFEGVS 195
>gi|347534611|ref|YP_004841281.1| hypothetical protein LSA_09490 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504667|gb|AEN99349.1| Uncharacterized protein ywlC [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 339
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 11/215 (5%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
K+ P AA +K+G +V+ PT+T+YGL DATN A+ +Y+ K R + PL +
Sbjct: 3 TKIFKPNQIDQAAAEIKRGNLVSFPTETVYGLGADATNVDAVEKVYKAKGRPSDNPLIVH 62
Query: 89 VSEITDIPKWA---DTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPD 144
V+++ + K+A D T +L+ PGP+TI+ + L+ ++ + A R PD
Sbjct: 63 VADVKTVEKYALPLDEKTK--KLIKAFWPGPLTIILKLKPNALSKKVTGGLDTAAFRNPD 120
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGST 203
+ L+K + PL SAN S +PS TL + + L +++ ++D G + ST
Sbjct: 121 KQATIDLIKTAEVPLVGPSANTSGKPSPTLAEHVYHDLHGKIAGILDAG--ATEVGVEST 178
Query: 204 IVDLSEENVYSIVRKG-VCYDKILKILHKYHLVEK 237
++D+S + +I+R G V KI +++ K EK
Sbjct: 179 VIDMSTK-TPAILRPGAVTQAKIEEVIGKVDDSEK 212
>gi|307611858|emb|CBX01573.1| hypothetical protein LPW_32601 [Legionella pneumophila 130b]
Length = 322
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 21/194 (10%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIP 96
L++G VA+PT+T+YGLA N+ AI ++E+K R +N PL + ++ + ++P
Sbjct: 15 LQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVHIASNWDLHDLVEEVP 74
Query: 97 KWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
++A +L + PGP+T+VF+ + + +N + + +A+R PDH ++LL+ +
Sbjct: 75 EYA------HQLADKFWPGPLTLVFHCKKDQINPLITGGQSTIAIRCPDHPLTQKLLQKL 128
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
+ P+ SAN + S T ++ Q ++DGG R G STIVD + +
Sbjct: 129 NIPVVAPSANPFGKISPTTALHVKQSFNDAELTILDGGRC----RVGIESTIVDATNPDS 184
Query: 213 YSIVRKGVCYDKIL 226
Y I+R G+ +K +
Sbjct: 185 YQILRHGIIDEKTI 198
>gi|448388888|ref|ZP_21565447.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena salina JCM 13891]
gi|445669346|gb|ELZ21957.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena salina JCM 13891]
Length = 202
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 13/193 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT-----D 94
AA+ ++ G +V PT+T+YGL D ++ A+ ++E K RD +KP+++ V D
Sbjct: 9 AARAIRAGELVVYPTETVYGLGADGLDADAVERVFEAKGRDRSKPVSVAVPTFETALEED 68
Query: 95 IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKL 154
+ +D E LPGPVT++ R+E L+ L +V +R+PD + L+
Sbjct: 69 YVRASDRERA---FADEFLPGPVTLLCERTEALSDVLTAGRERVGIRVPDCEPALAFLER 125
Query: 155 MDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGSTIVDLSEENV 212
+ P+ TSAN S EPS + + + +VV++ + S E ST+VDL
Sbjct: 126 AERPVTATSANVSGEPSARRVEDIGQQVLDEAVVLETDDLYESIDETVPSTVVDL---EA 182
Query: 213 YSIVRKGVCYDKI 225
+I R+G D+I
Sbjct: 183 GTIHRRGALADEI 195
>gi|54295812|ref|YP_128227.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens]
gi|53755644|emb|CAH17146.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens]
Length = 322
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 21/194 (10%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------ITDIP 96
L++G VA+PT+T+YGLA N+ AI ++E+K R +N PL + ++ + ++P
Sbjct: 15 LQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVHIASNWDLHDLVEEVP 74
Query: 97 KWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
++A +L + PGP+T+VF+ + + +N + + +A+R PDH ++LL+ +
Sbjct: 75 EYA------HQLADKFWPGPLTLVFHCKKDQINPLITGGQSTIAIRCPDHPLTQKLLQKL 128
Query: 156 DSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENV 212
+ P+ SAN + S T ++ Q ++DGG R G STIVD + +
Sbjct: 129 NIPVVAPSANPFGKISPTTALHVKQSFNDAELTILDGGRC----RVGIESTIVDATNPDS 184
Query: 213 YSIVRKGVCYDKIL 226
Y I+R G+ +K +
Sbjct: 185 YQILRHGIIDEKTI 198
>gi|15616333|ref|NP_244638.1| hypothetical protein BH3771 [Bacillus halodurans C-125]
gi|10176395|dbj|BAB07490.1| BH3771 [Bacillus halodurans C-125]
Length = 348
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 16/175 (9%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE-------I 92
AA +KKG +VALPT+T+YGL +A + +A+ ++ K R + PL + +S +
Sbjct: 27 AALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRKEQLLRLV 86
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+ IP A+ L+ PGP+TI+F + E ++ + + VAVR+P H + L+
Sbjct: 87 SHIPDSANL------LINAFWPGPLTIIFPKGEEVSTVVTAGLDTVAVRMPSHPVAQALI 140
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
+ + P+A SAN S +PS T + L +++ V+DGG + E ST++D
Sbjct: 141 EAANVPIAAPSANRSGKPSPTSATHVLADLRGKIAGVVDGGPTA--EGVESTVID 193
>gi|312134922|ref|YP_004002260.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor owensensis
OL]
gi|311774973|gb|ADQ04460.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor owensensis
OL]
Length = 348
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL +A A++ ++ K R + PL + +S + A
Sbjct: 19 AASILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISSKEMLGMCA 78
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T + L+ PGP+TIV + + + ++ V VR+P +K +L++L D P
Sbjct: 79 EITDERVYMLIERFWPGPLTIVLPKKNSIPDNVTAGLSTVGVRMPANKIALELIRLSDVP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
+A SAN S +PS T + + L +++ V+IDGG S FG ST+VDLS
Sbjct: 139 VAAPSANVSGKPSPTEAKHVIEDLMNKVDVIIDGGKCS----FGLESTVVDLS 187
>gi|255004138|ref|ZP_05278939.1| hypothetical protein AmarV_01920 [Anaplasma marginale str.
Virginia]
Length = 214
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+K +V PTDTLY LAC A ++ ++ LYEIK+R +KP+ I ++ + I K+A
Sbjct: 6 EALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIRKFASL 65
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ ++ L PGPVT V + +L V VRIP+H R +L+ P+A
Sbjct: 66 KDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFFRGTVGVRIPNHAMARTILEEFGGPVAA 125
Query: 162 TSANESNEPST 172
TSAN S P
Sbjct: 126 TSANLSGMPGA 136
>gi|56416667|ref|YP_153741.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries]
gi|56387899|gb|AAV86486.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries]
Length = 197
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+K +V PTDTLY LAC A ++ ++ LYEIK+R +KP+ I ++ + I K+A
Sbjct: 6 EALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIRKFASL 65
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ ++ L PGPVT V + +L V VRIP+H R +L+ P+A
Sbjct: 66 KDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFFRGTVGVRIPNHAMARTILEEFGGPVAA 125
Query: 162 TSANESNEPST 172
TSAN S P
Sbjct: 126 TSANLSGMPGA 136
>gi|392374455|ref|YP_003206288.1| hypothetical protein DAMO_1393 [Candidatus Methylomirabilis
oxyfera]
gi|258592148|emb|CBE68453.1| conserved protein of unknown function [Candidatus Methylomirabilis
oxyfera]
Length = 195
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 10/197 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT-DIPKW 98
AA L+ G +VA PTDTLY L DA+N A+ ++E K R + KP+ + V+++T I
Sbjct: 4 AASVLRSGGLVAFPTDTLYALGADASNPLAVERVFEAKGRSLIKPIPLLVADLTMAIQLV 63
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + L PGP+T+V + L ++ +R+PD L++ P
Sbjct: 64 GELPEAAVRLAERWWPGPLTLVVTAPRTVCALLTAETGRIGLRVPDSAVALALIRQFGGP 123
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSI 215
+ TSAN S + + E +L Q+ +V+DGG + +P ST++D++ + I
Sbjct: 124 VTGTSANRSGQKDPMNAYEVLHQLGDQVDLVLDGGPVVGGSP----STVIDVTTDPPI-I 178
Query: 216 VRKG-VCYDKILKILHK 231
+R+G + ++IL +L +
Sbjct: 179 MREGPIRQEEILSVLER 195
>gi|189183849|ref|YP_001937634.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda]
gi|189180620|dbj|BAG40400.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda]
Length = 322
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 25/173 (14%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+AAQ +++G +V PT+T+YG+ DATN A +Y IK R N PL I V+ I +
Sbjct: 14 VAAQFIEQGKLVIFPTETVYGIGADATNDNACQNIYRIKNRPTNNPLIIHVNNI----QA 69
Query: 99 ADTHTVSFEL---LAELLPGPVTIV--FNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLK 153
A T + +L LA L PGP+++V N+S ++ N+ VA+RIP HK LL+
Sbjct: 70 AQTIGIFNKLAIKLATLWPGPISLVVPLNQSAGISRTATANLDTVAIRIPAHKTALTLLQ 129
Query: 154 LMDSPLALTSANES----------------NEPSTLCINEFQKLWSQLSVVID 190
L P+A SAN S N P+T + Q + S +ID
Sbjct: 130 LTQKPIAAPSANPSGYLSPTTYQHANIHFQNSPNTFILKGTQSTYGLESTIID 182
>gi|313888752|ref|ZP_07822414.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845229|gb|EFR32628.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 351
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW-A 99
+Q L+ G +V LPT+T+YGL + N + +YE K R + PL + +++ + + A
Sbjct: 22 SQTLRDGGLVVLPTETVYGLGGNGLNKRTCKKIYEAKGRPSDNPLILHIADNSQLDDLVA 81
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ V+ + + + PGP+TI+F RS+ + E + VA+R P +K +LK +D P+
Sbjct: 82 EVPEVAKKCIKKFWPGPLTIIFKRSDKVPDEATGGLDTVAIREPSNKIAHDILKSVDFPV 141
Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGG 192
A SAN S PS + + L ++ +++DGG
Sbjct: 142 AAPSANLSGRPSPTKVEHVIEDLDGRVDIIVDGG 175
>gi|312884326|ref|ZP_07744035.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368099|gb|EFP95642.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122]
Length = 320
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + L G +VA+PT+T+YGLA DA+N A+ ++ K R + PL + + + + WA
Sbjct: 17 AQKILTSGELVAIPTETVYGLAADASNPDAVKKIFAAKGRPADHPLIVHIGRLEQLSDWA 76
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ + PGPVT++ N+++ N + + + +R+P H LL+
Sbjct: 77 RDIPQQAYTIAKAFWPGPVTLLLNKADDANTVVTGGLGTIGIRMPAHPVFSTLLEASGMA 136
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN + S T ++ L +++ V+DGG + STI+DL+ + + ++R
Sbjct: 137 VAAPSANPYKKLSPTSAVHVINSLEGKIAAVLDGGDCHH--GLESTIIDLT-QTPFRVLR 193
Query: 218 KG 219
G
Sbjct: 194 SG 195
>gi|448730508|ref|ZP_21712816.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus saccharolyticus DSM
5350]
gi|445793676|gb|EMA44248.1| Sua5/YciO/YrdC/YwlC family protein [Halococcus saccharolyticus DSM
5350]
Length = 196
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G VV PT+T+YGLA DA ++ A+ ++ +K RD +KP+++ V ++ ++
Sbjct: 7 AAAAIHEGEVVVYPTETVYGLAADALSASAVEQVFAVKGRDRSKPISLAVPDVETATEYT 66
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ E LPGPVT++ E + L +V +R+PDH LL+ + +PL
Sbjct: 67 RPTAQEKRFMNEFLPGPVTVLVEAREAVPDVLTAGGDQVGIRVPDHPTALALLREV-APL 125
Query: 160 ALTSANESNEPSTLCINEFQKLWSQLS-VVIDGG-IISNPERFGSTIVDLSEENVYSIVR 217
TSAN S PS + + + S VIDGG + E ST+VD+SE ++ R
Sbjct: 126 TATSANVSGNPSARRVEDVDAAVREASAAVIDGGNELPGTE---STVVDVSEGTIH---R 179
Query: 218 KGVCYDKILKILHK 231
+G D+I L +
Sbjct: 180 RGARADEITAWLDR 193
>gi|418249124|ref|ZP_12875446.1| hypothetical protein MAB47J26_10572 [Mycobacterium abscessus 47J26]
gi|420930588|ref|ZP_15393864.1| hypothetical protein MM1S1510930_1398 [Mycobacterium massiliense
1S-151-0930]
gi|420938734|ref|ZP_15402003.1| hypothetical protein MM1S1520914_1606 [Mycobacterium massiliense
1S-152-0914]
gi|420940840|ref|ZP_15404102.1| hypothetical protein MM1S1530915_0944 [Mycobacterium massiliense
1S-153-0915]
gi|420946056|ref|ZP_15409309.1| hypothetical protein MM1S1540310_0957 [Mycobacterium massiliense
1S-154-0310]
gi|420951102|ref|ZP_15414348.1| hypothetical protein MM2B0626_1318 [Mycobacterium massiliense
2B-0626]
gi|420955273|ref|ZP_15418512.1| hypothetical protein MM2B0107_0656 [Mycobacterium massiliense
2B-0107]
gi|420961180|ref|ZP_15424408.1| hypothetical protein MM2B1231_1381 [Mycobacterium massiliense
2B-1231]
gi|420991241|ref|ZP_15454393.1| hypothetical protein MM2B0307_0642 [Mycobacterium massiliense
2B-0307]
gi|420997077|ref|ZP_15460217.1| hypothetical protein MM2B0912R_1720 [Mycobacterium massiliense
2B-0912-R]
gi|421001511|ref|ZP_15464641.1| hypothetical protein MM2B0912S_1322 [Mycobacterium massiliense
2B-0912-S]
gi|353450779|gb|EHB99173.1| hypothetical protein MAB47J26_10572 [Mycobacterium abscessus 47J26]
gi|392139606|gb|EIU65338.1| hypothetical protein MM1S1510930_1398 [Mycobacterium massiliense
1S-151-0930]
gi|392144249|gb|EIU69974.1| hypothetical protein MM1S1520914_1606 [Mycobacterium massiliense
1S-152-0914]
gi|392151627|gb|EIU77335.1| hypothetical protein MM1S1530915_0944 [Mycobacterium massiliense
1S-153-0915]
gi|392159264|gb|EIU84960.1| hypothetical protein MM1S1540310_0957 [Mycobacterium massiliense
1S-154-0310]
gi|392160879|gb|EIU86570.1| hypothetical protein MM2B0626_1318 [Mycobacterium massiliense
2B-0626]
gi|392189321|gb|EIV14955.1| hypothetical protein MM2B0912R_1720 [Mycobacterium massiliense
2B-0912-R]
gi|392190252|gb|EIV15884.1| hypothetical protein MM2B0307_0642 [Mycobacterium massiliense
2B-0307]
gi|392200329|gb|EIV25935.1| hypothetical protein MM2B0912S_1322 [Mycobacterium massiliense
2B-0912-S]
gi|392254245|gb|EIV79712.1| hypothetical protein MM2B1231_1381 [Mycobacterium massiliense
2B-1231]
gi|392255801|gb|EIV81262.1| hypothetical protein MM2B0107_0656 [Mycobacterium massiliense
2B-0107]
Length = 226
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 25/202 (12%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +V +PTDT+YGL CDA +S A+ L K R + P+ + V W
Sbjct: 20 AVSALKAGELVVMPTDTVYGLGCDAFDSSAVTALLAAKGRGRDMPVGVLVG------SW- 72
Query: 100 DTHTV----------SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
HT+ + EL+ PGP++I+ + L+ +L V +R+P H
Sbjct: 73 --HTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAI 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + P+A++SAN S P+ L E + +L +++V +DGG STIVDL+
Sbjct: 131 ELLRAV-GPMAVSSANVSGRPAALTAAEARGQLDDKVAVYLDGG--QAELGAASTIVDLT 187
Query: 209 EENVYSIVRKG-VCYDKILKIL 229
IVR+G + ++I++++
Sbjct: 188 GPAPV-IVREGPISREQIVEVI 208
>gi|334563646|ref|ZP_08516637.1| hypothetical protein CbovD2_03654 [Corynebacterium bovis DSM 20582]
Length = 219
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 7/201 (3%)
Query: 33 DPKAALLAA--QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
D ++A LAA + ++ G +V LPTDT+YGL CDA ++ A+N L K R + P+ + V
Sbjct: 11 DGRSAGLAAATEAVRTGRLVVLPTDTVYGLGCDAFDTDAVNALLRAKNRGPDMPVPVLVG 70
Query: 91 EITDIPKWADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
T I +T + L E PG V++V + + L L V +R+P H
Sbjct: 71 SWTTIEGLVREYTYTMRTLVEAFWPGGVSLVVHEAPSLPWNLGDTRGTVMLRMPAHPVAV 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
LL+ P+A++SAN S P E +L ++V +DGG STI+D+S
Sbjct: 131 DLLRET-GPMAVSSANVSGHPPATTAQEAVDQLGEDVAVYLDGG--DGTVGTASTIIDVS 187
Query: 209 EENVYSIVRKGVCYDKILKIL 229
+ + V ++ ++L
Sbjct: 188 RDRPRVLREGAVPAGRVAEVL 208
>gi|309791839|ref|ZP_07686326.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG-6]
gi|308226161|gb|EFO79902.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6]
Length = 347
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 11/185 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L G +VA PT+T+YGL DA N A+ ++ K R PL + +++++D+ +
Sbjct: 20 AATILATGGLVAFPTETVYGLGADALNPTAVGRIFAAKGRPAEDPLIVHLADLSDLAR-V 78
Query: 100 DTH--TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
H V L A PGP+T+V R + + + VAVR+P H R L+ +
Sbjct: 79 TPHCPPVVAHLAAHCWPGPLTLVLPRGPAVPYRVTAGLETVAVRVPAHPVARALIAAAGT 138
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S T + L ++ +V+DGG P G ST++DLS + +
Sbjct: 139 PIAAPSANRFGHTSPTTAAHVLADLDGRIEMVLDGG----PATLGVESTVLDLSAP-IPT 193
Query: 215 IVRKG 219
++R G
Sbjct: 194 LLRPG 198
>gi|218247212|ref|YP_002372583.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801]
gi|218167690|gb|ACK66427.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801]
Length = 217
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 109/194 (56%), Gaps = 10/194 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+KG V+ PTDT+Y + CD N A+ + ++K+ +KPL S +++I +A
Sbjct: 24 LQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSNIADYALVSD 83
Query: 104 VSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
++ ++ ++PGP T + ++ + L ++P +R+P+H + +L+ + +P+ +
Sbjct: 84 EAYRIMKRVIPGPYTFLLPATKLVPKLVMSPKRKTTGIRVPNHSICQMILQNLGNPIVSS 143
Query: 163 SA---NESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
SA +E E TL + + F +L Q+ ++ID G+ P STI+D++ E +++
Sbjct: 144 SAHLPDEDGEFPTLELEKAKLFDRLDHQVDLIIDNGL--EPGFEVSTILDMTSEEP-AVI 200
Query: 217 RKGVCYDKILKILH 230
R+G+ +D++ L+
Sbjct: 201 RQGLGWDELQNWLN 214
>gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977]
gi|419711630|ref|ZP_14239093.1| hypothetical protein OUW_18896 [Mycobacterium abscessus M93]
gi|419716579|ref|ZP_14243975.1| hypothetical protein S7W_19140 [Mycobacterium abscessus M94]
gi|420863401|ref|ZP_15326794.1| hypothetical protein MA4S0303_1749 [Mycobacterium abscessus
4S-0303]
gi|420867797|ref|ZP_15331182.1| hypothetical protein MA4S0726RA_1281 [Mycobacterium abscessus
4S-0726-RA]
gi|420872230|ref|ZP_15335610.1| hypothetical protein MA4S0726RB_0861 [Mycobacterium abscessus
4S-0726-RB]
gi|420909013|ref|ZP_15372326.1| hypothetical protein MA6G0125R_0507 [Mycobacterium abscessus
6G-0125-R]
gi|420919785|ref|ZP_15383083.1| hypothetical protein MA6G0728S_0372 [Mycobacterium abscessus
6G-0728-S]
gi|420926283|ref|ZP_15389568.1| hypothetical protein MA6G1108_1466 [Mycobacterium abscessus
6G-1108]
gi|420965751|ref|ZP_15428965.1| hypothetical protein MM3A0810R_1494 [Mycobacterium abscessus
3A-0810-R]
gi|420976629|ref|ZP_15439811.1| hypothetical protein MA6G0212_1533 [Mycobacterium abscessus
6G-0212]
gi|420982009|ref|ZP_15445179.1| hypothetical protein MA6G0728R_1469 [Mycobacterium abscessus
6G-0728-R]
gi|420986625|ref|ZP_15449786.1| hypothetical protein MA4S0206_0686 [Mycobacterium abscessus
4S-0206]
gi|421006339|ref|ZP_15469454.1| hypothetical protein MA3A0119R_1416 [Mycobacterium abscessus
3A-0119-R]
gi|421011877|ref|ZP_15474970.1| hypothetical protein MA3A0122R_1443 [Mycobacterium abscessus
3A-0122-R]
gi|421022776|ref|ZP_15485824.1| hypothetical protein MA3A0731_1380 [Mycobacterium abscessus
3A-0731]
gi|421028019|ref|ZP_15491056.1| hypothetical protein MA3A0930R_1502 [Mycobacterium abscessus
3A-0930-R]
gi|421033310|ref|ZP_15496332.1| hypothetical protein MA3A0930S_1063 [Mycobacterium abscessus
3A-0930-S]
gi|421038897|ref|ZP_15501908.1| hypothetical protein MA4S0116R_1528 [Mycobacterium abscessus
4S-0116-R]
gi|421042586|ref|ZP_15505591.1| hypothetical protein MA4S0116S_0412 [Mycobacterium abscessus
4S-0116-S]
gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family
protein?) [Mycobacterium abscessus]
gi|382938952|gb|EIC63281.1| hypothetical protein OUW_18896 [Mycobacterium abscessus M93]
gi|382940865|gb|EIC65187.1| hypothetical protein S7W_19140 [Mycobacterium abscessus M94]
gi|392073200|gb|EIT99040.1| hypothetical protein MA4S0726RA_1281 [Mycobacterium abscessus
4S-0726-RA]
gi|392073921|gb|EIT99759.1| hypothetical protein MA4S0303_1749 [Mycobacterium abscessus
4S-0303]
gi|392076419|gb|EIU02252.1| hypothetical protein MA4S0726RB_0861 [Mycobacterium abscessus
4S-0726-RB]
gi|392121387|gb|EIU47152.1| hypothetical protein MA6G0125R_0507 [Mycobacterium abscessus
6G-0125-R]
gi|392133790|gb|EIU59532.1| hypothetical protein MA6G0728S_0372 [Mycobacterium abscessus
6G-0728-S]
gi|392138691|gb|EIU64424.1| hypothetical protein MA6G1108_1466 [Mycobacterium abscessus
6G-1108]
gi|392170888|gb|EIU96565.1| hypothetical protein MA6G0212_1533 [Mycobacterium abscessus
6G-0212]
gi|392174027|gb|EIU99693.1| hypothetical protein MA6G0728R_1469 [Mycobacterium abscessus
6G-0728-R]
gi|392188042|gb|EIV13681.1| hypothetical protein MA4S0206_0686 [Mycobacterium abscessus
4S-0206]
gi|392202091|gb|EIV27688.1| hypothetical protein MA3A0119R_1416 [Mycobacterium abscessus
3A-0119-R]
gi|392210281|gb|EIV35851.1| hypothetical protein MA3A0122R_1443 [Mycobacterium abscessus
3A-0122-R]
gi|392215473|gb|EIV41021.1| hypothetical protein MA3A0731_1380 [Mycobacterium abscessus
3A-0731]
gi|392227111|gb|EIV52625.1| hypothetical protein MA4S0116R_1528 [Mycobacterium abscessus
4S-0116-R]
gi|392229851|gb|EIV55361.1| hypothetical protein MA3A0930S_1063 [Mycobacterium abscessus
3A-0930-S]
gi|392231925|gb|EIV57429.1| hypothetical protein MA3A0930R_1502 [Mycobacterium abscessus
3A-0930-R]
gi|392241652|gb|EIV67140.1| hypothetical protein MA4S0116S_0412 [Mycobacterium abscessus
4S-0116-S]
gi|392257739|gb|EIV83188.1| hypothetical protein MM3A0810R_1494 [Mycobacterium abscessus
3A-0810-R]
Length = 226
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 25/202 (12%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +V +PTDT+YGL CDA +S A+ L K R + P+ + V W
Sbjct: 20 AVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLVG------SW- 72
Query: 100 DTHTV----------SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
HT+ + EL+ PGP++I+ + L+ +L V +R+P H
Sbjct: 73 --HTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAI 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + P+A++SAN S P+ L E + +L +++V +DGG STIVDL+
Sbjct: 131 ELLRAV-GPMAVSSANVSGRPAALTAAEARGQLDDKVAVYLDGG--QAELGAASTIVDLT 187
Query: 209 EENVYSIVRKG-VCYDKILKIL 229
IVR+G + ++I++++
Sbjct: 188 GPAPV-IVREGPISREQIVEVI 208
>gi|418419678|ref|ZP_12992861.1| hypothetical protein MBOL_14060 [Mycobacterium abscessus subsp.
bolletii BD]
gi|364001308|gb|EHM22504.1| hypothetical protein MBOL_14060 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 226
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 25/202 (12%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +V +PTDT+YGL CDA +S A+ L K R + P+ + V W
Sbjct: 20 AVSALKAGELVVMPTDTVYGLGCDAFDSSAVTALLAAKGRGRDMPVGVLVG------SW- 72
Query: 100 DTHTV----------SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
HT+ + EL+ PGP++I+ + L+ +L V +R+P H
Sbjct: 73 --HTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAI 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + P+A++SAN S P+ L E + +L +++V +DGG STIVDL+
Sbjct: 131 ELLRAV-GPMAVSSANVSGRPAALTAAEARGQLDDKVAVYLDGG--QAELGAASTIVDLT 187
Query: 209 EENVYSIVRKG-VCYDKILKIL 229
IVR+G + ++I++++
Sbjct: 188 GPAPV-IVREGPISREQIVEVI 208
>gi|374633977|ref|ZP_09706342.1| Sua5/YciO/YrdC/YwlC family protein [Metallosphaera yellowstonensis
MK1]
gi|373523765|gb|EHP68685.1| Sua5/YciO/YrdC/YwlC family protein [Metallosphaera yellowstonensis
MK1]
Length = 351
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G +VA PT+T+YGL +A + A +++ K+R ++ PL + ++++ + A
Sbjct: 19 AAKVIREGGLVAFPTETVYGLGANAFDPIAATKVFKAKRRPMDNPLIVHIADMEQLYDVA 78
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D +L + PGP+T+V ++E + LE + VAVR+P H QL++ P
Sbjct: 79 KDVPDEILDLCQRVWPGPLTLVLKKAEGVPLETTGGLNTVAVRMPAHPVALQLIRESGVP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ SAN + PS TL + Q L + V++DGG
Sbjct: 139 IGAPSANLAGRPSPTLAEHVIQDLGDSVDVILDGG 173
>gi|226315059|ref|YP_002774955.1| hypothetical protein BBR47_54740 [Brevibacillus brevis NBRC 100599]
gi|226098009|dbj|BAH46451.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 359
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L++G VVA PT+T+YGL +A +++A+ ++ K R + PL I I W
Sbjct: 28 AARFLREGAVVAFPTETVYGLGANALSNEAVEKIFTAKGRPSDNPL------IVHIGAWD 81
Query: 100 DTHTVSFE-------LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
TV+ E L+ PGP+T++ +++ + + + V VR+PDH L+
Sbjct: 82 QLSTVASEVPEKGKKLMEAFWPGPLTVILPKTDQVASLVTAGLDSVGVRMPDHPIALALI 141
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
K P+A SAN S PS T + L +++ V+DGG ST++D++++
Sbjct: 142 KEAGVPIAAPSANRSGRPSPTTAAHVLADLDGRVAGVVDGGATGV--GVESTVIDVTQDP 199
Query: 212 VYSIVRKGVCYDKILKILHKYHL 234
+ G+ +++ ++ L
Sbjct: 200 PMILRPGGITREQMEPVIGYVEL 222
>gi|261324536|ref|ZP_05963733.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33]
gi|261300516|gb|EEY04013.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33]
Length = 323
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 14/208 (6%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D A L A + L++G +VA+PT+T+YGLA DA N + + ++ K R PL V I
Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTK----VAVRIPDHK 146
++ VS L PGP+TIV E + E ++P VT +AVR+P H
Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMP-HG 126
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
+R ++ +DSP+A SAN S S T L ++ +++D G P G ST
Sbjct: 127 RVRDVITALDSPVAAPSANTSGRISPTSAAAVAGDLGGRIDLILDAG----PCGVGVEST 182
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHK 231
IV + + VY + G+ ++I L +
Sbjct: 183 IVKVDGDQVYLLRPGGLAAEEIEAFLGQ 210
>gi|18313733|ref|NP_560400.1| sua5 family protein [Pyrobaculum aerophilum str. IM2]
gi|18161288|gb|AAL64582.1| sua5 family protein [Pyrobaculum aerophilum str. IM2]
Length = 343
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV--- 89
DP+ AA+ LK G +VA PT+T+YGL A +++ K R ++ PL + V
Sbjct: 12 DPEVIKTAAEVLKNGGIVAAPTETVYGLFTHAYREDGCVKVFKAKGRPMDNPLIVHVDSV 71
Query: 90 ---SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHK 146
SEI +IP+ +LA+L PGPVTIV + + + VAVR P H
Sbjct: 72 EMASEIAEIPEGIRG------VLAQLWPGPVTIVVKSRGVVPRCVTAGLNTVAVRAPAHP 125
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
++K +++P+A SAN++ PS T + + L ++ ++IDGG P FG ST
Sbjct: 126 IPLAIIKELNAPIAGPSANKAGRPSPTTATHILEDLGDEVDLIIDGG----PTFFGVEST 181
Query: 204 IVDLSEE 210
I+D++ +
Sbjct: 182 IIDVTRK 188
>gi|332663181|ref|YP_004445969.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
1100]
gi|332331995|gb|AEE49096.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
1100]
Length = 317
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AA+ LK+G V+A+PT+T+YGLA +A + + ++ IK+R PL + V ++ + W
Sbjct: 9 AAELLKRGEVIAIPTETVYGLAGNALDESTVAKIFAIKQRPSFDPLIVHVPDLQSLENWV 68
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T + +L +PG +T++ + E ++ + VA+RIP H ++LL+L+ P
Sbjct: 69 QNIPTAARQLAQHFMPGALTLLLEKKETISDLVTAGSPLVAMRIPAHPLAQELLRLLPFP 128
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
LA SAN S T + +L Q+ ++DGG P G STIV E +I
Sbjct: 129 LAAPSANPFGYISPTRAEHVAHQLGDQIPYILDGG----PCTIGLESTIVGFPEGRA-TI 183
Query: 216 VRKG 219
RKG
Sbjct: 184 FRKG 187
>gi|433447664|ref|ZP_20411104.1| translation factor, Sua5 family [Anoxybacillus flavithermus
TNO-09.006]
gi|431999801|gb|ELK20713.1| translation factor, Sua5 family [Anoxybacillus flavithermus
TNO-09.006]
Length = 347
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 111/209 (53%), Gaps = 10/209 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL +A ++ A+ ++ K R + PL + ++ + A
Sbjct: 24 AAAYLQRGELVAFPTETVYGLGANAMSTAAVENIFVAKGRPSDNPLIVHIATTEQLHDIA 83
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D V++ L+ PGP+T+V ++ + ++ + + VAVR+P+H L++ P
Sbjct: 84 CDIPPVAYTLIEHFWPGPLTLVLSKKDAVSPRVTAGLNTVAVRMPNHPIALALIQASGLP 143
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+A SAN S PS T + L +++ V+DGG + ST++D + + +I+R
Sbjct: 144 IAAPSANRSGRPSPTTAKHVLDDLDGRIAAVVDGG--ATGVGVESTVIDCTSA-IPTILR 200
Query: 218 -KGVCYDKILKILHKYH----LVEKNTFP 241
GV ++I +++ LVEK P
Sbjct: 201 PGGVTKEEIERVIGAVDIDRALVEKEAVP 229
>gi|407465417|ref|YP_006776299.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosopumilus sp.
AR2]
gi|407048605|gb|AFS83357.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosopumilus sp.
AR2]
Length = 198
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D + A+Q + KG + PTDT+YG+ CD N ++ +YEIK RD+ K L +
Sbjct: 6 DKEGIRTASQIITKGGIAVFPTDTVYGIGCDPYNKTSVEKIYEIKSRDITKSLPVLTHSK 65
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRS-----EHLNLELNPNVTKVAVRIPDHKF 147
K A +T++ ++ + PGP+T++ + E LNL+ K+A+R+P+ K
Sbjct: 66 ETAKKIAQFNTITEKIADKFWPGPLTMILKVTDDKIKESLNLK-----DKIAIRVPNQKC 120
Query: 148 LRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
+LL+ + L TSAN S S + + V +DGGIIS + STI+++
Sbjct: 121 TLELLQKCNF-LVGTSANVSGNSSHTNPKDCLQSLEGYDVFVDGGIISG--KGESTIIEI 177
Query: 208 SEENVYSIVRKG 219
E + I+R+G
Sbjct: 178 -ENSKIKIIREG 188
>gi|399925823|ref|ZP_10783181.1| translation factor [Myroides injenensis M09-0166]
Length = 206
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP--LAIC--VSEITDIPK 97
+ L+ G +V PTDT+YGL CD TNSKA+ + +IK ++K IC +S I+D K
Sbjct: 22 KILRDGGLVIYPTDTVYGLGCDITNSKALERIAKIKGVKLDKANFSFICYDLSNISDYVK 81
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
DT T F++L + LPGP T + + L E T V +R+PD+ R+++K + +
Sbjct: 82 QIDTST--FKILKKALPGPYTFILPGNNDLPKEFKKKKT-VGIRVPDNNIAREIVKRLGN 138
Query: 158 PLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
P+ TS + +E + ++K + + VIDGG N ST++DLS
Sbjct: 139 PIVSTSIYDEDEVLEYTTDPELIYEKWQNTVDAVIDGGYGDNQ---ASTVIDLS 189
>gi|381189060|ref|ZP_09896617.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Flavobacterium frigoris PS1]
gi|379648985|gb|EIA07563.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
(t(6)A) formation in tRNA [Flavobacterium frigoris PS1]
Length = 206
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 25 MCSIVKV--TDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +K+ P A +A + LK G ++ PTDT+YGL CD TN+KA+ + IK
Sbjct: 1 MAEFIKIYPDKPSEAAIAKVVKVLKDGGLIIYPTDTVYGLGCDITNTKALERIARIKGIK 60
Query: 81 VNKP--LAIC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
++K +C +S ++D K DT T F++L LPGP T + + L E T
Sbjct: 61 LDKANFSFVCHDLSNLSDYVKQIDTAT--FKILKRALPGPYTFILPGNNSLPKEFKKKTT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
V +R+PD+ ++++ + +P+ TS ++ ++ + F+K + + +VIDGG
Sbjct: 119 -VGIRVPDNSIALEIVRQLGNPIVSTSIHDDDDVIEYTTDPELIFEKWQNLVDMVIDGGY 177
Query: 194 ISNPERFGSTIVDLSEENVYSIVRKG 219
N GSTI+DLS + I+R+G
Sbjct: 178 GDN---VGSTIIDLSGDEP-EIIREG 199
>gi|257061454|ref|YP_003139342.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802]
gi|256591620|gb|ACV02507.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802]
Length = 217
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 109/194 (56%), Gaps = 10/194 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+KG V+ PTDT+Y + CD N A+ + ++K+ +KPL S +++I +A
Sbjct: 24 LQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSNIADYALVSD 83
Query: 104 VSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
++ ++ ++PGP T + ++ + L ++P +R+P+H + +L+ + +P+ +
Sbjct: 84 EAYRIMKRVIPGPYTFLLPATKLVPKLVMSPKRKTTGIRVPNHSICQMILQNLGNPIVSS 143
Query: 163 SA---NESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
SA +E E TL + + F +L Q+ ++ID G+ P STI+D++ E +++
Sbjct: 144 SAHLPDEEGEFPTLELEKAKLFDRLDHQVDLIIDNGL--EPGFEVSTILDMTSEEP-AVI 200
Query: 217 RKGVCYDKILKILH 230
R+G+ +D++ L+
Sbjct: 201 RQGLGWDELQNWLN 214
>gi|402496658|ref|YP_006555918.1| translation factor SUA5 [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649931|emb|CCF78101.1| putative translation factor SUA5 [Wolbachia endosymbiont of
Onchocerca ochengi]
Length = 194
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 12/183 (6%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
++ +V PT+T+Y LAC+A +S+AI +Y++KKR NKPL+I V++I+ + + A
Sbjct: 8 AVRNNLLVCFPTETIYALACNALDSRAIKKIYQVKKRSQNKPLSIFVNDISSLARIAKLE 67
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPN---VTKVAVRIPDHKFLRQLLKLMDSPL 159
L+ PGP+T + N + PN V +RIPDH + +L + +PL
Sbjct: 68 EKYTNLVNHFSPGPITYILPLK---NNNILPNEFFKGSVGIRIPDHPIVISILNELKTPL 124
Query: 160 ALTSANESNEPSTLCINEFQKLWSQ-LSVVI-DGGIISNPERFGSTIVDLSEENVYSIVR 217
TS N S E + K Q LS V D ++S E STI+DL+++ + ++R
Sbjct: 125 VATSVNISGEQGAYKASGIPKSIKQHLSAVAEDDKLVSGIE---STIIDLTQDKI-EVIR 180
Query: 218 KGV 220
+G+
Sbjct: 181 EGM 183
>gi|408675522|ref|YP_006875270.1| Sua5/YciO/YrdC/YwlC family protein [Emticicia oligotrophica DSM
17448]
gi|387857146|gb|AFK05243.1| Sua5/YciO/YrdC/YwlC family protein [Emticicia oligotrophica DSM
17448]
Length = 209
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 11/194 (5%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV-NKPLAICVSE 91
D + + +CLK G ++ PTDT+Y + CD N+KA+ L +IK + + +I +
Sbjct: 14 DERKLIRVVECLKNGGIIIYPTDTVYSMGCDIFNTKAVEKLSKIKGIKLQHNNFSIVCHD 73
Query: 92 ITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQL 151
+++I +A +F LL LPGP T + + L L + +RIPDH+ ++
Sbjct: 74 LSNISTYAKVSNNTFRLLKRALPGPFTFILPATSDLPKTLQTKRKTIGIRIPDHEIPLKI 133
Query: 152 LKLMDSPLALTSANESNEPSTLCINEFQKLWSQ----LSVVIDGGIIS-NPERFGSTIVD 206
++++ +P+ TS + + NE + ++SQ + ++IDGG P ST+V
Sbjct: 134 IEMLGNPIITTSVKDDIDDIQEYPNEIEVIYSQNADKVDMIIDGGWCGLEP----STVV- 188
Query: 207 LSEENVYSIVRKGV 220
L+ ++ + ++R+GV
Sbjct: 189 LAVDDDFEVIREGV 202
>gi|330995801|ref|ZP_08319698.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
11841]
gi|329574531|gb|EGG56096.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
11841]
Length = 189
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 100/181 (55%), Gaps = 3/181 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A + +++G V+ PTDT++G+ CDATN +A+ +Y+IKKRD +K L V + ++
Sbjct: 10 AVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVDSDHRLQRYV 69
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+D V+++L+ E P+TI+F+++++L L V +R+ +F R+L
Sbjct: 70 SDVPNVAWDLI-EYATRPLTIIFDKAKNLAPNLLAEDGSVGIRVTREEFSRELCYRFQKA 128
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S EPS C ++ ++ + + ++ + S+I+ L + +I+R
Sbjct: 129 VVSTSANVSGEPSPACFDDISDEIKNAVDYIVQSRRKEKTKAAPSSIIKLRPDGEVTIIR 188
Query: 218 K 218
K
Sbjct: 189 K 189
>gi|427407196|ref|ZP_18897401.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. F0473]
gi|425707671|gb|EKU70715.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. F0473]
Length = 363
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 12/193 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT---DIP 96
AA +++G +VA PT+T+YGL + ++ A +Y+ K R + PL + +S+++ D+
Sbjct: 17 AAGLIRRGQLVAFPTETVYGLGANGLDASACARIYKAKGRPADNPLILHISDLSMAADVA 76
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ + + LL PGP+T++ ++ H+ + + V VR P + R L++
Sbjct: 77 R--EVPPAAAHLLTVFAPGPLTVIVPKAAHIPDIVTGGLPTVGVRCPANDIARALIRAAG 134
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVY 213
P+A SAN S PS T L ++ +++DGG R+G STIVD + E
Sbjct: 135 VPVAAPSANTSGRPSPTAAAMVADDLAGRIPLILDGGAC----RWGIESTIVDCTAEGAV 190
Query: 214 SIVRKGVCYDKIL 226
+I+R G +++
Sbjct: 191 TILRPGAVTREMI 203
>gi|269219855|ref|ZP_06163709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
str. F0332]
gi|269210760|gb|EEZ77100.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
str. F0332]
Length = 205
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 7/178 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTH 102
+++G +V LPTDT+YGL D + +A++ L K R +KP + V+ + + A +
Sbjct: 19 VREGLLVVLPTDTVYGLGADPRSPRAVDRLLTAKGRGRDKPSPVLVASVAQAEELAREAP 78
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
V+ L+AE PG +T+V SE L +L +A+R+P+H +LLK PLA++
Sbjct: 79 DVAKALMAEFWPGALTLVLP-SERLGWDLGETNGTIALRMPNHPAALELLKEA-GPLAVS 136
Query: 163 SANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
SAN S P + E ++L +++V +DGG P STIV + + ++R+G
Sbjct: 137 SANLSGRPPAATVGEAVEQLGGKVAVYLDGGPC--PGGAPSTIVSF-DGGLMRVLREG 191
>gi|17987811|ref|NP_540445.1| SUA5 protein [Brucella melitensis bv. 1 str. 16M]
gi|225851941|ref|YP_002732174.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457]
gi|256264548|ref|ZP_05467080.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9]
gi|260563482|ref|ZP_05833968.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str.
16M]
gi|265990535|ref|ZP_06103092.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|384210792|ref|YP_005599874.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M5-90]
gi|384407892|ref|YP_005596513.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M28]
gi|384444510|ref|YP_005603229.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis NI]
gi|17983537|gb|AAL52709.1| sua5 protein [Brucella melitensis bv. 1 str. 16M]
gi|225640306|gb|ACO00220.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457]
gi|260153498|gb|EEW88590.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str.
16M]
gi|263001319|gb|EEZ13894.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094882|gb|EEZ18620.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9]
gi|326408439|gb|ADZ65504.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M28]
gi|326538155|gb|ADZ86370.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M5-90]
gi|349742506|gb|AEQ08049.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis NI]
Length = 323
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 14/208 (6%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D A L A + L++G +VA+PT+T+YGLA DA N + + ++ K R PL V I
Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTK----VAVRIPDHK 146
++ VS L PGP+TIV E + E ++P VT +AVR+P H
Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMP-HG 126
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
+R ++ +DSP+A SAN S S T L Q+ +++D G P G ST
Sbjct: 127 RVRDVITALDSPVAAPSANTSGRISPTSAAAVAGDLGGQIDLILDAG----PCGVGVEST 182
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHK 231
IV + + V+ + G+ ++I L +
Sbjct: 183 IVKVDGDQVHLLRPGGLAAEEIEAFLGQ 210
>gi|397779560|ref|YP_006544033.1| hypothetical protein BN140_0394 [Methanoculleus bourgensis MS2]
gi|396938062|emb|CCJ35317.1| putative protein ywlC [Methanoculleus bourgensis MS2]
Length = 191
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
+A + L++ ++ PT+T+YGL DA + A+ +YE K R +++P++I VS++ +
Sbjct: 6 MAVRVLRRDGLIVYPTETVYGLGADALSEDAVLKVYEAKNRPLSRPISIAVSDMDMLGAV 65
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + + LPGPVT+V L L V +R PDH+ ++ +DSP
Sbjct: 66 AVLDEAARAFIERFLPGPVTVVLPAKSCLPAILTGGTGLVGIRWPDHEVALAIIARLDSP 125
Query: 159 LALTSANESNE-PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S E P T + ++ V+DGG + ST+VDL+ I+R
Sbjct: 126 ITATSANVSGEIPPT----RPEDVYVPNDYVVDGGELPGTP---STVVDLTTRR---ILR 175
Query: 218 KGVCYDKILKILH 230
KG ++ + L
Sbjct: 176 KGAEWEAVEAFLK 188
>gi|288554403|ref|YP_003426338.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4]
gi|288545563|gb|ADC49446.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4]
Length = 346
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G VVA PT+T+YGL +A + KAI ++E K R + PL + ++ + +
Sbjct: 27 AALWISEGEVVAFPTETVYGLGANALDEKAIAKIFEAKGRPSDNPLIVHIANRDQLSELV 86
Query: 100 DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
T + E L E PGP+TI+F + + + + VA+R+P H +L+K + P
Sbjct: 87 TEITPAAEKLMEAFWPGPLTIIFKKKGPIAPNVTAGLDTVAIRMPSHPLALKLIKAANVP 146
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+A SAN S +PS T + + L +++ V+DGG S ST++D S
Sbjct: 147 VAAPSANLSGKPSPTTAAHVYHDLQGRIAGVVDGG--STGVGLESTVLDCS 195
>gi|290559728|gb|EFD93053.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 358
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 109/204 (53%), Gaps = 13/204 (6%)
Query: 23 SKMCSIVKVTDPKAAL----LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKK 78
++M I+K++ L LAA+ ++ G +V PT+T+YG+ DA N+KA ++ +K
Sbjct: 7 ARMTEIMKMSKKNVDLEKIKLAAREIRGGKLVVFPTETVYGIGADAFNTKACRDIFRVKN 66
Query: 79 RDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
R + PL + +S+ + E + L P P+T + R + ++ + + V
Sbjct: 67 RAADNPLIVHISDFEQLDAITYVDGELREKIRRLWPNPITFILKRKKIPDV-VTAGMDTV 125
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNP 197
AVR+P+++ L++ +P+A SAN S PS T + + ++SV+IDGG
Sbjct: 126 AVRMPNNRIALSLIRESHTPIAAPSANISTFPSATEAKHAIEDFNGKVSVIIDGG----R 181
Query: 198 ERFG--STIVDLSEENVYSIVRKG 219
+FG ST++D+S + Y ++R G
Sbjct: 182 SKFGIESTVIDVSRK-PYRLLRPG 204
>gi|344995781|ref|YP_004798124.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964000|gb|AEM73147.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
lactoaceticus 6A]
Length = 348
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL +A A++ ++ K R + PL I VS + A
Sbjct: 19 AALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIIHVSSKDMLEMCA 78
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T + L+ PGP+TIV + + + + ++ V VR+P +K +L++L P
Sbjct: 79 EITDERVYMLIERFWPGPLTIVLPKKDVIPENVTAGLSTVGVRMPANKIALELIRLSGIP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T + + L ++ V+IDGG S FG ST+VDLS E +
Sbjct: 139 VAAPSANVSGKPSPTEAKHVIEDLMGKVDVIIDGGKCS----FGLESTVVDLSGEKAVIL 194
Query: 216 VRKGVCYDKILKIL----HKYHLVEKNTFPIP 243
+ Y + ++L + +VE T +P
Sbjct: 195 RPGAISYFALKEVLGDIEYSKSVVEGLTGTVP 226
>gi|315121975|ref|YP_004062464.1| hypothetical protein CKC_01125 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495377|gb|ADR51976.1| hypothetical protein CKC_01125 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 320
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 18/211 (8%)
Query: 29 VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
+ +TD A + L G + +PT+T+YGLA +A + AI LYEIK+R PL
Sbjct: 1 MSITDSDVLQQACEFLDAGLPIVIPTETVYGLAVNARDPSAIRRLYEIKQRPPTNPLICH 60
Query: 89 VSEITDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNP----NVTKVAVRIP 143
VS I+ + K+A +S L PGP+T+V + SE+ +++P N+ R+P
Sbjct: 61 VSNISMVKKYAHIDDLSLHLSKLFWPGPLTLVLDLLSEN---DIHPLAISNLNTACFRVP 117
Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEF--QKLWSQLSVVIDGGIISNPERFG 201
F ++L+ PLA+ SAN S + ST I + Q+ + IDGGI + G
Sbjct: 118 -RGFAKKLIDTYGYPLAIPSANISGQISTTNIQHILSSPICKQIPLAIDGGI----SKIG 172
Query: 202 --STIVDLSEENVYSIVR-KGVCYDKILKIL 229
STIV++ + I+R G+ DKI K +
Sbjct: 173 LESTIVNVKHDQTIHILRPGGLEIDKIEKAI 203
>gi|57234410|ref|YP_181562.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes
195]
gi|57224858|gb|AAW39915.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes
195]
Length = 213
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK+G VV PTDT+Y + A+N++A+ +++IK R K L + +I+ I + A
Sbjct: 17 AVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDISQINQVA 76
Query: 100 DTHT-VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ +L E PG +T+V +++++ LEL VA+RIP+ + ++LK + P
Sbjct: 77 KVFPPLASKLAKEYWPGGLTLVLPKTDNIPLELTGGNETVAIRIPNQPAVIEMLKRVGEP 136
Query: 159 LALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVR 217
+ TSAN S S+L E +K L ++ ++DGG +S STI+ ++ + + I+R
Sbjct: 137 VTGTSANLSGCKSSLNAAEAEKQLGDRVDFILDGGQVSGGVE--STIIAVNPDGL-KIIR 193
Query: 218 KGVCYD 223
+G +
Sbjct: 194 QGAIKE 199
>gi|311746055|ref|ZP_07719840.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
gi|126576272|gb|EAZ80550.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
Length = 209
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 9/193 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP-LAICVSE 91
DPK A L+ G VV PTDT+YGL CD TN++A+ + IK + K + ++
Sbjct: 14 DPKKIREIAALLRDGAVVIYPTDTVYGLGCDITNTRAVERICRIKGINPRKHNFSFVCAD 73
Query: 92 ITDIPKWADTHTVS-FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
++ I + T F+++ + LPGP T + + + L+ V +R+PDHK R
Sbjct: 74 LSTISHYTRVITKPVFKMMKKALPGPYTFILEANTQVPKILHSKKKTVGIRVPDHKVPRM 133
Query: 151 LLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
L++ + PL TS + +E + F+K + VVI GG N GST++D
Sbjct: 134 LVEELGQPLLSTSIRDEDEVLEYSTDPELIFEKYEHLVDVVIHGGFGQN---IGSTVLDC 190
Query: 208 SEENVYSIVRKGV 220
+ + I+R+G+
Sbjct: 191 TGHEM-EIIREGL 202
>gi|225631196|ref|ZP_03787894.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591104|gb|EEH12288.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 195
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
++ +V PT+T+Y LAC+A ++++I +Y+IKKR NKPL+I VS+I ++ K A
Sbjct: 7 NAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKV 66
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPN---VTKVAVRIPDHKFLRQLLKLMDSP 158
+L+ PGP+ + N + PN + +RIP+H +L + P
Sbjct: 67 KERYIDLINHFSPGPIAYILPLK---NNNILPNEFFKDSIGIRIPEHPIAISILNKLKVP 123
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVI-DGGIISNPERFGSTIVDLSEENVYSIV 216
+ TS N S + S N+ Q + LSVVI D ++S E STI+DL+E+ + ++
Sbjct: 124 IVATSTNISGKESVCKANDIPQSIKQHLSVVIEDDELVSGIE---STIIDLTEDKI-KVL 179
Query: 217 RKG 219
R+G
Sbjct: 180 REG 182
>gi|153816408|ref|ZP_01969076.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756]
gi|317502463|ref|ZP_07960626.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089289|ref|ZP_08338191.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439449|ref|ZP_08619062.1| hypothetical protein HMPREF0990_01456 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846243|gb|EDK23161.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus torques ATCC
27756]
gi|316896148|gb|EFV18256.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405841|gb|EGG85370.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016126|gb|EGN45921.1| hypothetical protein HMPREF0990_01456 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 507
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 4/171 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A LK G +VA PT+T+YGL DA +A Y K R + PL + ++E D+ K A
Sbjct: 21 AGMILKNGGLVAFPTETVYGLGADALKEEAAMKTYAAKGRPSDNPLIVHIAEYEDLRKIA 80
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ + L A PGP+T++F +SE + + VAVR+P + R L++
Sbjct: 81 VNIPAETDALAAHFWPGPLTMIFEKSEVVPYGTTGGLDTVAVRMPTDEVARALIRAAGGF 140
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLS 208
++ SAN S PS TL + + L ++ +++DGG + STI+D++
Sbjct: 141 VSAPSANTSGRPSPTLAEHVAEDLGGKIDMILDGGAVEIG--LESTILDMT 189
>gi|390933443|ref|YP_006390948.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568944|gb|AFK85349.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 349
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 111/201 (55%), Gaps = 9/201 (4%)
Query: 25 MCSIVKVT--DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +VK+ +P L+ AA L G +VA PT+T+YG+ ++ N A+ ++ K R
Sbjct: 1 MTKVVKLDRDNPDMNLIDEAAAILLNGGLVAFPTETVYGIGANSLNPDAVAKIFVAKGRP 60
Query: 81 VNKPLAICVSEITDIPKWA-DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVA 139
+ PL + ++E D+ K+A + S +L + PGP+T++F +S+ + + VA
Sbjct: 61 QDNPLILHIAEFQDLFKYAKNVSNDSLKLAHQFWPGPLTMIFEKSDIVPSINTAGMNTVA 120
Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPE 198
+R+P +K L+K P++ SAN S +PS T + L+ ++ ++IDGG S
Sbjct: 121 IRMPSNKIAHTLIKRAGVPVSAPSANLSGKPSPTDASHVISDLYGRVDMIIDGG--SCDV 178
Query: 199 RFGSTIVDLSEENVYSIVRKG 219
ST+VD++ E + +I+R G
Sbjct: 179 GVESTVVDMTGE-IPTILRPG 198
>gi|423721593|ref|ZP_17695775.1| translation factor, SUA5-type, RNA-binding [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365396|gb|EID42692.1| translation factor, SUA5-type, RNA-binding [Geobacillus
thermoglucosidans TNO-09.020]
Length = 348
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AAQ LK G VVA PT+T+YGL +A ++KA+ ++ K R + PL + ++ + + +
Sbjct: 24 AAQWLKAGEVVAFPTETVYGLGANAKDTKAVEKIFAAKGRPSDNPLIVHIAHVKQLDEIV 83
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+D ++ L+ PGP+T++ + E ++ ++ ++ VAVR+PDH L++
Sbjct: 84 SDVPRIAGMLIERFWPGPLTLILPKKEGVISDKVTAGLSTVAVRMPDHPVALALIEESGL 143
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PLA SAN S PS T + F L ++ ++DGG ST++D + +V +I+
Sbjct: 144 PLAAPSANISGRPSPTTAAHVFTDLNGRIVGIVDGG--ETGIGVESTVLDCT-SDVPTIL 200
Query: 217 RKG 219
R G
Sbjct: 201 RPG 203
>gi|300705060|ref|YP_003746663.1| hypothetical protein RCFBP_20897 [Ralstonia solanacearum CFBP2957]
gi|299072724|emb|CBJ44077.1| conserved protein of unknown function, translation factor domain,
SUA5 type [Ralstonia solanacearum CFBP2957]
Length = 336
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 34 PKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
P AA L AA+ L+ G +VA PT+T+YGL DA N +AI +Y +K R N P+ + V +
Sbjct: 11 PSAARLDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVD 70
Query: 92 ITDIPKWADT-HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQ 150
D+ WAD ++ +L+ PGP+T++ R+ H+ + + +R P H +
Sbjct: 71 GADLTYWADDLPGIALQLVEAFWPGPLTLILKRAPHIPAAVAGGQDSIGLRCPSHPVAQA 130
Query: 151 LL---KLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDG-GIISNPERFGSTIVD 206
LL K +A SAN+ + S ++ + + V++G G+ E STIVD
Sbjct: 131 LLSRFKRGRGGIAAPSANKFGQVSPTTAQHVREEFGEAVFVLEGDGVDVGIE---STIVD 187
Query: 207 LSE 209
LS
Sbjct: 188 LSR 190
>gi|212697122|ref|ZP_03305250.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM
7454]
gi|212675897|gb|EEB35504.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM
7454]
Length = 345
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE---ITDIP 96
AA+ +K G +VA PT+T+YGL D N +A +++ K R + PL + + E + ++
Sbjct: 21 AAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPEDNPLILHIDEDYKLDELV 80
Query: 97 KWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
+ D T F L+ L PGP+T++ +S + + VAVR P K R+ +K +
Sbjct: 81 EEVDDRT-KF-LIKNLWPGPLTVILKKSSKIPDIITGGGDTVAVRRPKDKLAREFIKFCN 138
Query: 157 SPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
P+A SAN S PS T + F + ++ ++IDGG S+ ST++D+S EN
Sbjct: 139 RPIAAPSANISGRPSPTNAKDVFYDMDGRIPLIIDGG--SSDIGIESTVIDMSLEN 192
>gi|430833912|ref|ZP_19451922.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0679]
gi|430836806|ref|ZP_19454783.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0680]
gi|430839841|ref|ZP_19457778.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0688]
gi|430859375|ref|ZP_19476987.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1552]
gi|430485812|gb|ELA62693.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0679]
gi|430488129|gb|ELA64822.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0680]
gi|430490290|gb|ELA66822.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E0688]
gi|430543736|gb|ELA83791.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1552]
Length = 341
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 16/213 (7%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ LK+G +VA PT+T+YGL +A A+ ++ +K R + PL + V+ + ++ D
Sbjct: 15 AEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVKEYVD 74
Query: 101 T-HTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
H + +++ PGP+T++F + + L + ++ A R+PD+K ++++L P
Sbjct: 75 NFHPAAEKIVKNFWPGPLTLIFKIKKDTLPSVVTGGLSTAAFRMPDNKKTLEVIELSGVP 134
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS- 214
L SAN S +PS T + + L +++ +ID G R G ST++DLS+
Sbjct: 135 LVGPSANTSGKPSPTTADHVYHDLQGKITGIIDDGAT----RIGVESTVLDLSDPTAMPM 190
Query: 215 IVRKG-VCYDKILKILHK-----YHLVEKNTFP 241
I+R G V ++I ++ HLV++N P
Sbjct: 191 ILRPGAVTKEQIEAVIESPVAIDQHLVKENETP 223
>gi|392381795|ref|YP_005030992.1| putative translation factor (Sua5-like) [Azospirillum brasilense
Sp245]
gi|356876760|emb|CCC97537.1| putative translation factor (Sua5-like) [Azospirillum brasilense
Sp245]
Length = 323
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 24 KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
K I+ T P A + L+ G +VA PT+T+YGL DAT+ +A+ ++ K R
Sbjct: 4 KHPDIIPAT-PAGLARAGEALRSGELVAFPTETVYGLGGDATDDRAVAAIFAAKGRPQFN 62
Query: 84 PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLEL--NPNVTKVAVR 141
PL V ++ A + EL + PGP+T+V R L L + + VAVR
Sbjct: 63 PLIAHVPDLEAAEAIAVLDERAVELAHQFWPGPLTLVLPRRAEAGLSLLVSAGLDSVAVR 122
Query: 142 IPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERF 200
+P H + LLK P+A SAN S S + + L ++S+V+ GG +
Sbjct: 123 VPAHPVAQALLKAASKPIAAPSANRSGAVSPTAPHHVIESLGDRVSMVVAGGKC----QV 178
Query: 201 G--STIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
G ST++DL+ E + V ++I +++ L N
Sbjct: 179 GVESTVLDLTGETPVLLRPGAVLREEIERLIGPIQLSAGN 218
>gi|325280221|ref|YP_004252763.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
20712]
gi|324312030|gb|ADY32583.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
20712]
Length = 190
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
LK G V+ PTDT++GL CDATN +A+ +Y+IKKR NK + + + + I +AD
Sbjct: 16 LKNGGVILYPTDTIWGLGCDATNPEAVKRIYDIKKRADNKSMLVLLDDAGKIASYADVPD 75
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
++ +L+ E+ P TI++ ++ L L + +RI +F R L+ + P+ TS
Sbjct: 76 IALDLI-EVADKPTTIIYPGAKRLAPNLIAEDGTIGIRITREEFTRSLIFRYNKPIVSTS 134
Query: 164 ANESNEPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
AN S EPS E +++ + + ++D + S+I+ L I+RK
Sbjct: 135 ANISGEPSPHFFGEISEEIKNAVDYIVDYRRNDHKPAAPSSIIKLGMGGEIQIIRK 190
>gi|312112634|ref|YP_003990950.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1]
gi|336237096|ref|YP_004589712.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311217735|gb|ADP76339.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1]
gi|335363951|gb|AEH49631.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 351
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
AAQ LK G VVA PT+T+YGL +A ++KA+ ++ K R + PL + ++ + + +
Sbjct: 27 AAQWLKAGEVVAFPTETVYGLGANAKDTKAVEKIFAAKGRPSDNPLIVHIAHVKQLDEIV 86
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+D ++ L+ PGP+T++ + E ++ ++ ++ VAVR+PDH L++
Sbjct: 87 SDVPRIAGMLIERFWPGPLTLILPKKEGVISDKVTAGLSTVAVRMPDHPVALALIEESGL 146
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIV 216
PLA SAN S PS T + F L ++ ++DGG ST++D + +V +I+
Sbjct: 147 PLAAPSANISGRPSPTTAAHVFTDLNGRIVGIVDGG--ETGIGVESTVLDCT-SDVPTIL 203
Query: 217 RKG 219
R G
Sbjct: 204 RPG 206
>gi|440791937|gb|ELR13171.1| YwlC, putative [Acanthamoeba castellanii str. Neff]
Length = 403
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI------- 92
A + +++G +V+ PT+T+YGL +A +++A +++ K R + PL + +S +
Sbjct: 21 AVELIRQGELVSFPTETVYGLGANALDNEACKKIFQAKGRPSDNPLIVHISSMEMLHTVA 80
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
+P D F ++ PGP+TI+F + E++ + T VAVR+P H +L+
Sbjct: 81 ASVPPKVD----EFLTRSQFWPGPLTILFPKKENVPQAVTAGQTTVAVRMPSHPIAHKLI 136
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEEN 211
L P+A SAN S PS T + L ++ ++DGG S ST++D+S +
Sbjct: 137 ALSGVPIAAPSANMSGRPSPTTAGHVIADLTGRVKCIVDGGGTSV--GLESTVLDMSRDP 194
Query: 212 VYSIVRKGVCYDKILKIL 229
+ G+ ++++ K L
Sbjct: 195 PMVLRPGGITHEQLKKYL 212
>gi|354593500|ref|ZP_09011543.1| sua5/YciO/YrdC/YwlC family protein [Commensalibacter intestini
A911]
gi|353672611|gb|EHD14307.1| sua5/YciO/YrdC/YwlC family protein [Commensalibacter intestini
A911]
Length = 327
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 13/197 (6%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA + +G +V+ T+T+YGL DATN+ A+ +Y+ K R PL I S+ + ++
Sbjct: 17 AATLINQGGLVSFGTETVYGLGADATNTLAVQKIYKAKGRPSFNPLIIHFSDTDHLFQFV 76
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNP----NVTKVAVRIPDHKFLRQLLKLM 155
++ EL + PG +T+V N+ ++++P +++ +AVRIP+ RQL+
Sbjct: 77 QKTELALELSLKFWPGALTLVLNQKLDNPVKISPVATASLSTMAVRIPNTHVARQLIHYS 136
Query: 156 DSPLALTSANESNE--PSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEEN 211
P+A SAN S + PST + FQ+L +++ +ID G P + G STI+DLS +
Sbjct: 137 KKPIAAPSANSSGKISPST-AQHVFQELNNKIDAIIDSG----PCQVGVESTILDLSTDT 191
Query: 212 VYSIVRKGVCYDKILKI 228
+ G+ ++++ I
Sbjct: 192 PKLLRPGGISLEQLIPI 208
>gi|89056386|ref|YP_511837.1| translation factor SUA5 [Jannaschia sp. CCS1]
gi|88865935|gb|ABD56812.1| translation factor SUA5 [Jannaschia sp. CCS1]
Length = 314
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L+ G ++ALPT+T+YGLA DA N A+ ++ K R PL + V + +
Sbjct: 19 AAEVLRDGGLLALPTETVYGLAADARNGAAVARIFAAKGRPTFNPLIVHVVSLETAEELV 78
Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+ + + L PGP+T+V + ++ + +AVR+P H R +L P+
Sbjct: 79 EVNAQAHALAKAFWPGPMTLVLPSKGRVADLISGGLDTLAVRVPAHPLARAVLGAFGGPV 138
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
A SAN S + S T+ + L S + V+DGG STI+ SE V +
Sbjct: 139 AAPSANPSGQISPTMAAHVVAGLGSAVEAVLDGGACGV--GLESTILAPSEGGVRLLREG 196
Query: 219 GVCYDKILKIL 229
GV + + ++
Sbjct: 197 GVSREAVEAVV 207
>gi|227503860|ref|ZP_03933909.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC
6940]
gi|227199483|gb|EEI79531.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC
6940]
Length = 222
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 10/186 (5%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LA + K G +V +PTDTLYGL CDA ++ A+ L K R + P+ + V I
Sbjct: 20 LAVKAAKSGRLVVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWDTIRGL 79
Query: 99 ADTHTVSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++T + L E PG ++IV ++ L L V +R+P H +LL+ +
Sbjct: 80 VASYTDTARTLVEAFWPGGLSIVVPQAPSLPWNLGDTRGTVMLRMPLHPIAIELLREV-G 138
Query: 158 PLALTSANESNE-PSTLCINEFQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYS 214
P+A++SAN S + P T + Q+L ++V +DGG I P STI+DLS E Y
Sbjct: 139 PMAVSSANISGQTPPTTALEAKQQLGKAVTVYLDGGETAIGKP----STIIDLSGERPY- 193
Query: 215 IVRKGV 220
++R+G
Sbjct: 194 LLREGA 199
>gi|312793262|ref|YP_004026185.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180402|gb|ADQ40572.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 348
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA L++G +VA PT+T+YGL +A A++ ++ K R + PL + VS + A
Sbjct: 19 AALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHVSSKDMLEMCA 78
Query: 100 D-THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ T + L+ PGP+TIV + + + + ++ V VR+P +K +L++L P
Sbjct: 79 EITDERVYMLIERFWPGPLTIVLPKKDVIPENVTAGLSTVGVRMPANKIALELIRLSGVP 138
Query: 159 LALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSI 215
+A SAN S +PS T + + L ++ V+IDGG S FG ST+VDLS E +
Sbjct: 139 VAAPSANVSGKPSPTEAKHVIEDLMGKVDVIIDGGKCS----FGLESTVVDLSGEKAVIL 194
Query: 216 VRKGVCYDKILKIL----HKYHLVEKNTFPIP 243
+ Y + ++L + +VE T +P
Sbjct: 195 RPGAISYFALKEVLGDIEYSKSVVEGLTGTVP 226
>gi|67468340|ref|XP_650214.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56466800|gb|EAL44828.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449707648|gb|EMD47276.1| sua5, putative [Entamoeba histolytica KU27]
Length = 357
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 28 IVKV----TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
IVKV D K AA+ +++G +V PT+T+YGL D AIN ++++K R +
Sbjct: 19 IVKVDRDNVDSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDN 78
Query: 84 PLAICVSEITDIPKWA-----DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
PL +S+I + K A D H +L+ PG +TI+F R+E + E+ + V
Sbjct: 79 PLICHISDIEMLNKLAAHVSEDAH----KLIKRFWPGALTIIFPRNEAVPNEVTAGLNTV 134
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
VR+P H + +K +P+A SAN S +PS T+ + L ++ ++IDGG
Sbjct: 135 GVRMPSHPIAYEFIKQCGTPIAAPSANLSTKPSPTIGRHCIDDLNGRIEMIIDGG 189
>gi|424757914|ref|ZP_18185642.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R508]
gi|402406379|gb|EJV38937.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R508]
Length = 340
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN + + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|150020136|ref|YP_001305490.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis
BI429]
gi|149792657|gb|ABR30105.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis
BI429]
Length = 335
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ +K G +VA PT+T+YGL A+N +A++ ++++K R + PL + V+ + + + +
Sbjct: 21 KVIKSGGLVAFPTETVYGLGASASNGEAVDKIFKVKGRAKDNPLIVHVAFVDTLYEIGEV 80
Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
+ +++ ++ PGP+T V + + ++ V VRIP H R+L + P+A
Sbjct: 81 NEKYRKVIEQITPGPITFVIRKKASFPKNVTASLNTVGVRIPAHPVARKLCEYA-GPIAA 139
Query: 162 TSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
SAN S +PS T + L+ ++ +ID G + P STI+DLS ++ I+R G
Sbjct: 140 PSANLSGKPSPTDASAVIEDLFGKIECIIDAG--NTPFGIESTIIDLS-GDIPIILRPG 195
>gi|146278497|ref|YP_001168656.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC
17025]
gi|145556738|gb|ABP71351.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17025]
Length = 312
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEIT 93
P+ AA+ L G +VALPT+T+YGLA DA N +A+ ++E K R PL + V ++
Sbjct: 11 PEGVADAARILAGGGLVALPTETVYGLAGDARNDRAVARIFEAKGRPQFNPLIVHVPDLE 70
Query: 94 DIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
++A + L PGP+T+V E ++ ++ + VA+R+P H ++L+
Sbjct: 71 AARRYARFDAEALRLAETFWPGPLTLVLPLEGEPVSPLVSAGLPTVAIRVPAHPLAQRLM 130
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ PLA SAN S S T + + L ++ V+DGG
Sbjct: 131 RAFGGPLAAPSANPSGRVSPTRPEHVLEGLAGRIEAVLDGG 171
>gi|429759620|ref|ZP_19292118.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica KON]
gi|429179581|gb|EKY20828.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica KON]
Length = 344
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PK 97
L A L+ G VVA+PT+T+YGL + ++ A++ +Y K R + PL + V I P
Sbjct: 16 LVAHALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDNPLILHVPNAESIKPL 75
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + L+ PGP+TI +S+ + + +VA+R PDH R +L+L
Sbjct: 76 VKEIPETARALIEAFWPGPLTITLPKSDLVPDRATGGLARVALRCPDHAVCRNILELAGV 135
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S PS T + + + ++ ++D GI + G ST+V++ ++ V +
Sbjct: 136 PIAAPSANISGRPSPTTAQSVYDDMNGRIPYIVDAGICT----IGVESTVVEVRDDGV-T 190
Query: 215 IVRKGVCYDKILK 227
I+R G ++L+
Sbjct: 191 ILRPGGITKEMLE 203
>gi|422693855|ref|ZP_16751860.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4244]
gi|315148530|gb|EFT92546.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4244]
Length = 340
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN + + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|256368861|ref|YP_003106367.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915]
gi|255999019|gb|ACU47418.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915]
Length = 323
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 14/208 (6%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D A L A + L++G +VA+PT+T+YGLA DA N + + ++ K R PL + V I
Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIVHVDGI 67
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTK----VAVRIPDHK 146
++ VS L PGP+TIV E + E ++P VT +AVR+P H
Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMP-HG 126
Query: 147 FLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--ST 203
+R ++ +DSP+A SAN S S T L ++ +++D G P G ST
Sbjct: 127 RVRDVITALDSPVAAPSANTSGRISPTSAAAVAGDLGGRIDLILDAG----PCGVGVEST 182
Query: 204 IVDLSEENVYSIVRKGVCYDKILKILHK 231
IV + + V+ + G+ ++I L +
Sbjct: 183 IVKVDGDQVHLLRPGGLAAEEIEAFLGQ 210
>gi|220927715|ref|YP_002504624.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10]
gi|219998043|gb|ACL74644.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10]
Length = 359
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 20/181 (11%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAI------CVSEIT 93
AA+ LK+G VA PT+T+YGL +A + A++ +++ K R + PL + VSE+T
Sbjct: 21 AAEALKQGMTVAFPTETVYGLGANALDGIAVSKIFKAKGRPSDNPLIVHIADREKVSELT 80
Query: 94 D-IPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLL 152
IP A L+ +L PGP+T+V +S + E+ + V +R+P+H +L+
Sbjct: 81 SFIPDKA------VALMDKLWPGPLTLVMKKSSVIPKEITAGLDTVGIRMPEHPVALELI 134
Query: 153 KLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSE 209
KL P+A SAN S +PS T + L ++ +++D G R G ST++D+S
Sbjct: 135 KLAGIPVAAPSANVSGKPSPTAAQHVLDDLDGKIEMIVDAG----SSRVGLESTVLDVSS 190
Query: 210 E 210
+
Sbjct: 191 D 191
>gi|408418444|ref|YP_006759858.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacula toluolica Tol2]
gi|405105657|emb|CCK79154.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacula toluolica Tol2]
Length = 214
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 10/202 (4%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV--- 89
+P+ + A + L+ VV P LYG+A A + KA+ ++++K+R +N P+ + +
Sbjct: 16 EPENIIKAGKILRNNGVVIFPAKCLYGIAARALDEKAVKKVFDLKQRPLNNPILVLIPYR 75
Query: 90 SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
+ + D+ K + +L+ PG +T+VF ++ L + K+ VR+P H R
Sbjct: 76 AMLKDLVK--SISKPAEKLMDTFWPGNMTLVFEAKNNIPTLLTADTGKIGVRLPVHPVAR 133
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
L++LM PL TSAN S + + + Q +V+D GI+ GSTIVD++
Sbjct: 134 ALVELMGVPLTGTSANLSGQAGCSRTDRLDTAVIDQADLVLDAGILKGGT--GSTIVDVT 191
Query: 209 EENVYSIVRKG-VCYDKILKIL 229
N++ I+R+G V D+I KIL
Sbjct: 192 GSNIH-ILREGEVTADQIKKIL 212
>gi|402830940|ref|ZP_10879633.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Capnocytophaga sp. CM59]
gi|402282989|gb|EJU31511.1| tRNA threonylcarbamoyl adenosine modification protein,
Sua5/YciO/YrdC/YwlC family [Capnocytophaga sp. CM59]
Length = 207
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 14/185 (7%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKP--LAIC--VSEITDIPK 97
+CL+ G V+ PTDT+YGL CD T+SKA+ + +K ++K +C +S ++D K
Sbjct: 22 ECLRDGGVIIYPTDTVYGLGCDITHSKALERIAHLKGVKLDKANFSFVCADLSNLSDYVK 81
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
DT T F+LL LPG T + + +L E T V +R+PD+ R L++ + +
Sbjct: 82 QIDTAT--FKLLKRALPGAYTFILPGNNNLPKEFKKKKT-VGIRVPDNNIARTLVEKLGN 138
Query: 158 PLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYS 214
P+ +S + +E + F+K ++ +VIDGG N STI+DLS V
Sbjct: 139 PIVSSSIYDEDEVVEYTTDPELIFEKWQDKVDIVIDGGYGDN---VASTIIDLS-TGVPE 194
Query: 215 IVRKG 219
++R+G
Sbjct: 195 LIREG 199
>gi|405979999|ref|ZP_11038340.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391374|gb|EJZ86438.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces turicensis
ACS-279-V-Col4]
Length = 219
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA +K G ++ +PTDT+YG+ CDA+N A+ + +K R P + V I
Sbjct: 20 AATAVKSGQLIVIPTDTVYGIGCDASNPDAVARVLAVKGRGRQMPPPVVVPGRESIETLC 79
Query: 100 -DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
D ++ L E PG +T++ L +L + VR+P+ +R LL + P
Sbjct: 80 IDIPEAAYRLTDEYWPGGLTLILRARPDLGWDLGETGGTIGVRMPNEPRIRTLLDTV-GP 138
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
LALTSAN + P + E +Q+ + +DGG P STI+D ++ V +I
Sbjct: 139 LALTSANTTGNPPATSVGEAVDYFGTQVPLYVDGG--PTPGSTPSTILDFTKGGVRAI 194
>gi|227519762|ref|ZP_03949811.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104]
gi|424677531|ref|ZP_18114382.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV103]
gi|424680474|ref|ZP_18117281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV116]
gi|424684931|ref|ZP_18121640.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV129]
gi|424687635|ref|ZP_18124271.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV25]
gi|424690943|ref|ZP_18127472.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV31]
gi|424693919|ref|ZP_18130331.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV37]
gi|424698659|ref|ZP_18134942.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV41]
gi|424701118|ref|ZP_18137294.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV62]
gi|424705495|ref|ZP_18141547.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV63]
gi|424706561|ref|ZP_18142564.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV65]
gi|424715825|ref|ZP_18145148.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV68]
gi|424719514|ref|ZP_18148661.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV72]
gi|424723752|ref|ZP_18152706.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV73]
gi|424728299|ref|ZP_18156911.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV81]
gi|424734940|ref|ZP_18163421.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV85]
gi|424751010|ref|ZP_18179065.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV93]
gi|227072850|gb|EEI10813.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104]
gi|402354027|gb|EJU88842.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV103]
gi|402354410|gb|EJU89219.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV116]
gi|402360171|gb|EJU94779.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV129]
gi|402363314|gb|EJU97806.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV31]
gi|402363918|gb|EJU98375.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV25]
gi|402371627|gb|EJV05777.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV41]
gi|402372331|gb|EJV06452.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV62]
gi|402372527|gb|EJV06645.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV37]
gi|402379236|gb|EJV13052.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV63]
gi|402387723|gb|EJV21196.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV65]
gi|402389350|gb|EJV22748.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV68]
gi|402394314|gb|EJV27495.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV81]
gi|402396425|gb|EJV29488.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV72]
gi|402397120|gb|EJV30155.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV73]
gi|402405603|gb|EJV38193.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV85]
gi|402406073|gb|EJV38642.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ERV93]
Length = 340
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 10/187 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT-HTVS 105
G +VA PT+T+YGL DA N A+ +Y++K R + PL + V+ + + K+ T V+
Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+T++FN + + + + VA R+PD++ L++ + PL SA
Sbjct: 81 TKLVSAFWPGPLTLIFNVPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSA 140
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS-EENVYSIVRKGV 220
N S +PS T + + L +++ ++D G P + G ST++DL+ E+ V I+R G
Sbjct: 141 NTSGKPSPTSAEHVYHDLQGKIAAILDDG----PTQIGVESTVLDLTAEDGVPVILRPGA 196
Query: 221 CYDKILK 227
+ L+
Sbjct: 197 ITKEQLE 203
>gi|404491111|ref|YP_006715217.1| hypothetical protein BLi03940 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423684237|ref|ZP_17659076.1| hypothetical protein MUY_04090 [Bacillus licheniformis WX-02]
gi|52350120|gb|AAU42754.1| YwlC [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|383441011|gb|EID48786.1| hypothetical protein MUY_04090 [Bacillus licheniformis WX-02]
Length = 349
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ L++ VA PT+T+YGL +A +S+A+ +YE K R + PL + ++EI + ++A
Sbjct: 26 AARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAEIEQLAEFA 85
Query: 100 DTHTVSFELLAE-LLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + E+L + PGP+T+V + L+ + + VAVR+PDH +L++
Sbjct: 86 EVDSPQAEMLMKRFWPGPLTLVLPCKPGVLSTRVTAGLDTVAVRMPDHPVALELIRQAGV 145
Query: 158 PLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYS 214
P+A SAN S +PS T + L +++ V+DGG P G ST+V + E +
Sbjct: 146 PVAAPSANLSGKPSPTKAEHVVNDLNGRIAGVVDGG----PTGVGVESTVVSCTGE-IPV 200
Query: 215 IVRKG 219
I+R G
Sbjct: 201 ILRPG 205
>gi|225010857|ref|ZP_03701325.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
MS024-3C]
gi|225005065|gb|EEG43019.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
MS024-3C]
Length = 206
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 18/206 (8%)
Query: 25 MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M ++K+ +P+ A L + L+ G ++ PTDT+YG+ CD TN+KA+ L ++K
Sbjct: 1 MGQLIKIYPNNPQEAALEKVVRALRDGALIIYPTDTVYGIGCDITNNKALEKLAKLKGVK 60
Query: 81 VNKPLA--IC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
+ K IC +S I+D K DT T F++L LPGP T V + +L T
Sbjct: 61 LEKATWSFICADLSNISDYVKQIDTAT--FKILKRSLPGPYTFVLPGNNNLPKAFKKRKT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
+ +R+PDH +++++++ +P+ TS + +E + F+K ++ VIDGG
Sbjct: 119 -IGIRVPDHSIPKKIVEMLGNPIVSTSIYDPDEVLEYTTDPELIFEKWSPHVAFVIDGGY 177
Query: 194 ISNPERFGSTIVDLSEENVYSIVRKG 219
N STIVDLS ++ ++R+G
Sbjct: 178 GDN---VPSTIVDLSGDSP-ELIRRG 199
>gi|387595764|gb|EIJ93387.1| Sua5/YciO/YrdC/YwlC family protein [Nematocida parisii ERTm1]
Length = 344
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK--WADTHTVSFE 107
VA PT+T+YGL I ++EIK R + PL + VS + + K D V E
Sbjct: 24 VAFPTETVYGLGASVWREDLIKKVFEIKNRPQDNPLIVHVSSLDMLRKCIVGDIPEVYNE 83
Query: 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
L+ E PGP+T++F ++ +L + VAVR+PDHK + +++ + P+ SAN+S
Sbjct: 84 LINEFWPGPLTLLFKKAANLPYSVTAGSEYVAVRMPDHKDILRVIDYLGEPIVGPSANKS 143
Query: 168 NEPS-TLCINEFQKLWSQLSVVIDGGI 193
PS T + F L +S++IDGG+
Sbjct: 144 GRPSPTTAQHVFDDLNGDVSLIIDGGM 170
>gi|167378326|ref|XP_001734759.1| sua5 [Entamoeba dispar SAW760]
gi|165903590|gb|EDR29072.1| sua5, putative [Entamoeba dispar SAW760]
Length = 289
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
D K AA+ +++G +V PT+T+YGL D AIN ++++K R + PL +S+I
Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87
Query: 93 TDIPKWA-----DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
+ K A D H +L+ PG +TI+F R+E + E+ + V VR+P H
Sbjct: 88 EMLNKLAAHVSEDAH----KLIKRFWPGALTIIFPRNETVPNEVTAGLNTVGVRMPSHPI 143
Query: 148 LRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
+ +K +P+A SAN S +PS T+ + L ++ ++IDGG
Sbjct: 144 AYEFIKQCKTPIAAPSANLSTKPSPTIGRHCIDDLNGRIEMIIDGG 189
>gi|387594034|gb|EIJ89058.1| Sua5/YciO/YrdC/YwlC family protein [Nematocida parisii ERTm3]
Length = 344
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK--WADTHTVSFE 107
VA PT+T+YGL I ++EIK R + PL + VS + + K D V E
Sbjct: 24 VAFPTETVYGLGASVWREDLIKKVFEIKNRPQDNPLIVHVSSLDMLRKCIVGDIPEVYNE 83
Query: 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANES 167
L+ E PGP+T++F ++ +L + VAVR+PDHK + +++ + P+ SAN+S
Sbjct: 84 LINEFWPGPLTLLFKKAANLPYSVTAGSEYVAVRMPDHKDILRVIDYLGEPIVGPSANKS 143
Query: 168 NEPS-TLCINEFQKLWSQLSVVIDGGI 193
PS T + F L +S++IDGG+
Sbjct: 144 GRPSPTTAQHVFDDLNGDVSLIIDGGM 170
>gi|395801530|ref|ZP_10480789.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium sp. F52]
gi|395436399|gb|EJG02334.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium sp. F52]
Length = 206
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 25 MCSIVKV--TDPKAALLA--AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
M +K+ P A +A + L+ G +V PTDT+YGL CD TNS+A+ + +IK
Sbjct: 1 MAEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVK 60
Query: 81 VNKP--LAIC--VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVT 136
+ K IC +S ++D + +T T F++L LPGP T + + +L E T
Sbjct: 61 LEKANFSFICHDLSNLSDYVRQINTST--FKILKRALPGPYTFILPGNNNLPKEFKKKTT 118
Query: 137 KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE---FQKLWSQLSVVIDGGI 193
V +R+PD+ + ++++ + +P+ TS + ++ + F+K + +VIDGG
Sbjct: 119 -VGIRVPDNNIILEIVRQLGNPVVSTSIRDEDDIIEYTTDPELIFEKWQHLVDMVIDGGY 177
Query: 194 ISNPERFGSTIVDLSEENVYSIVRKG 219
N GSTI+DLSE IVR+G
Sbjct: 178 GDN---VGSTIIDLSEHEPV-IVREG 199
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,733,228,146
Number of Sequences: 23463169
Number of extensions: 143057155
Number of successful extensions: 348669
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5355
Number of HSP's successfully gapped in prelim test: 1679
Number of HSP's that attempted gapping in prelim test: 336492
Number of HSP's gapped (non-prelim): 7147
length of query: 245
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 106
effective length of database: 9,097,814,876
effective search space: 964368376856
effective search space used: 964368376856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)