BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy198
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus
GN=Yrdc PE=2 SV=1
Length = 280
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 137 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + E R GST+VDLS + I+R G
Sbjct: 197 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSG 256
Query: 220 VCYDKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 257 CALENTTAILQGKYGLL 273
>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC
PE=2 SV=1
Length = 276
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 128/196 (65%), Gaps = 5/196 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S+A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 75 LRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYCHVR- 133
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTS
Sbjct: 134 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTS 193
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS++IDGG I + PE R GST+VDLS + I+R G
Sbjct: 194 ANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 253
Query: 220 VCYDKILKILHKYHLV 235
+ IL +Y L+
Sbjct: 254 CALESTSAILQEYGLL 269
>sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens
GN=YRDC PE=1 SV=1
Length = 279
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++
Sbjct: 77 LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 135
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTS
Sbjct: 136 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 195
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 196 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 255
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 256 CALESTTAILQQKYGLL 272
>sp|Q3U5F4|YRDC_MOUSE YrdC domain-containing protein, mitochondrial OS=Mus musculus
GN=Yrdc PE=1 SV=1
Length = 280
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
L+ G VVA+PTDTLYGLAC A++S A++ +Y +K R KPLA+C+ + D+ ++
Sbjct: 78 LRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 136
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
V ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTS
Sbjct: 137 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTS 196
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
AN S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 197 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 256
Query: 220 VCYDKILKIL-HKYHLV 235
+ IL KY L+
Sbjct: 257 CALENTTSILQQKYGLL 273
>sp|Q60369|Y062_METJA Uncharacterized protein MJ0062 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0062 PE=3 SV=1
Length = 207
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +V TDTLYG++ +A N KA+ +Y IK+R+ NKPL+ICV + +I K+A + ++
Sbjct: 32 GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALTS 163
+++ + LPGP+TI+ + + P++ + +RIPD +R+L + PL TS
Sbjct: 92 KIIDKFLPGPLTIILKKKPGI-----PDIVAKDYIGIRIPDEPIIRELSIV---PLTTTS 143
Query: 164 ANESNEPSTLCINEFQK-LWSQLSVVIDGG 192
AN S + S ++E K + ++ VID G
Sbjct: 144 ANISGKESPTTVDEIDKEVLKKVDYVIDIG 173
>sp|Q0VTD8|RIMN_ALCBS tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573) GN=rimN PE=3 SV=1
Length = 182
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 38 LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
L AAQ +++G VVA PT+++YGL CD N A+ L IK R V+K L + + +
Sbjct: 6 LSAAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAP 65
Query: 98 WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+ + L + P P+T + + S+ L + KVAVR+PDH RQL +L
Sbjct: 66 YLHLNEQQSAQLEKKWPAPITYLVDASDRLPAWVRGEHRKVAVRVPDHPLARQLCQLAGQ 125
Query: 158 PLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGI--ISNPERFGSTIVDLSEENV 212
P+ TSAN S P+ N +Q +L +QL ++ G + P STI+DL +
Sbjct: 126 PIISTSANISGRPAAR--NRYQVARQLGNQLDFIVSGACDRAAKP----STIIDLESGRI 179
>sp|Q1QTJ8|RIMN_CHRSD tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=rimN PE=3 SV=1
Length = 185
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
A L++G ++A PT+ ++GL CD + A+ L +K+RD K L + ++ + W
Sbjct: 11 AVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMDQLEPWL 70
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
A + LAE PGP T + + L T +AVR+ DH +RQL P
Sbjct: 71 AGLDALQRARLAESWPGPNTWLVPDNGRARPLLRGEHTSLAVRVSDHPLVRQLCAAFGGP 130
Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDG--GIISNPERFGSTIVDL 207
L +SAN + EP + + + + + ++DG G + P STI DL
Sbjct: 131 LVSSSANRAGEPPAMSAADVRAAFGEAVTLLDGALGGYARP----STIRDL 177
>sp|Q9KVT5|RIMN_VIBCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=rimN PE=3 SV=1
Length = 188
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+KGCV+A PT+ ++GL CD N A+ L IK+R V K + + + + +
Sbjct: 10 AVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYV 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D ++ E L ++L P P+T V S + VAVR+ DH +++L
Sbjct: 70 DETQLTAEQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFG 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
PL TSAN S +P+ + E +L +Q++VV++G R G + ++ + +
Sbjct: 130 KPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEG---KTSGRHGPS--EIRDARSLQV 184
Query: 216 VRKG 219
+R+G
Sbjct: 185 LRQG 188
>sp|A5F4C5|RIMN_VIBC3 tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
O395) GN=rimN PE=3 SV=1
Length = 188
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 9/184 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L+KGCV+A PT+ ++GL CD N A+ L IK+R V K + + + + +
Sbjct: 10 AVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYV 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D ++ E L ++L P P+T V S + VAVR+ DH +++L
Sbjct: 70 DETQLTAEQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFG 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
PL TSAN S +P+ + E +L +Q++VV++G R G + ++ + +
Sbjct: 130 KPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEG---KTSGRHGPS--EIRDARSLQV 184
Query: 216 VRKG 219
+R+G
Sbjct: 185 LRQG 188
>sp|Q7MGL3|RIMN_VIBVY tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain YJ016) GN=rimN PE=3 SV=2
Length = 186
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ LK+G VVA PT+ ++GL CD N AI L IK+R +K L + ++ + + D
Sbjct: 10 KALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQPYLDL 69
Query: 102 HTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++S E L + PGP T V S + + VAVR+ DH +++L P
Sbjct: 70 TSLSAEQLQRVFATWPGPYTWVMPASARASALVTGYRQTVAVRVSDHPLVQKLCSEYGKP 129
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGI 193
L TSAN S + + + Q +L SQ+SV++ G I
Sbjct: 130 LTSTSANLSGQTECKTVEQVQDQLGSQISVILFGEI 165
>sp|Q8DDD6|RIMN_VIBVU tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain CMCP6) GN=rimN PE=3 SV=1
Length = 186
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ LK+G VVA PT+ ++GL CD N AI L IK+R +K L + ++ + + D
Sbjct: 10 KALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQPYLDL 69
Query: 102 HTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++S E L + PGP T V S + + VAVR+ DH +++L P
Sbjct: 70 TSLSAEQLQRVFATWPGPYTWVMPASARASALVTGYRQTVAVRVSDHPLVQKLCSEYGKP 129
Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGI 193
L TSAN S + + + Q +L SQ+SV++ G I
Sbjct: 130 LTSTSANLSGQTECKTVEQVQDQLGSQISVILFGEI 165
>sp|P39153|YWLC_BACSU Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
OS=Bacillus subtilis (strain 168) GN=ywlC PE=3 SV=1
Length = 346
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 26/225 (11%)
Query: 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP+ A AA L++ VVA PT+T+YGL +A N+ A+ +YE K R + PL + +++I
Sbjct: 18 DPQIAQ-AAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADI 76
Query: 93 TDI-------PKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPD 144
+ + P+ A T L+ PG +T++ + + L+ + + VA+R+PD
Sbjct: 77 SQLEDLTGPAPEKAKT------LMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPD 130
Query: 145 HKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG-- 201
H L++ P+A SAN S +PS T + L +++ ++DGG P G
Sbjct: 131 HPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGG----PTGIGVE 186
Query: 202 STIVDLSEENVYSIVRKGVCYDKILKILHKYH----LVEKNTFPI 242
ST++ +++ + G+ ++I ++ H L ++N PI
Sbjct: 187 STVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPI 231
>sp|A8FP81|RIMN_SHESH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sediminis (strain HAW-EB3) GN=rimN PE=3
SV=1
Length = 185
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ +++G VVA PT+ +YGL CD N +AI L +KKR K L + S+ + + D
Sbjct: 11 EIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQQLLPYIDE 70
Query: 102 HTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ E L ++ PGP T + L+ L + +AVR+ H ++ + + + P
Sbjct: 71 SRLTNEQLNKVFVKWPGPFTFIMPIKPGLSNLLCGSFNSLAVRVSSHPTIQAICQRLGKP 130
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVD 206
L TSAN + EP + E K ++ +I G + ER STIVD
Sbjct: 131 LVSTSANHAGEPPAMSCEEIIAKFDGEIDALISGSL--GAERKPSTIVD 177
>sp|Q3SG43|RIMN_THIDA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=rimN PE=3 SV=1
Length = 188
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 3/170 (1%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKWADTH 102
L++G V+A PT++ YGL CD N+ A+ L +K RD K + + + P
Sbjct: 18 LRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGALS 77
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
+ PGPVT V S EL T VAVR+ H+ L + + + L T
Sbjct: 78 PTGRARMRRSWPGPVTWVVPASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTALVST 137
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
SAN+S + ++++ V+DG I + R ST++DL+ +
Sbjct: 138 SANKSGHTPAKTAAQCRRMFGARVRVVDGRIGT--RRRPSTLIDLATGKI 185
>sp|Q15ZX7|RIMN_PSEA6 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=rimN PE=3 SV=1
Length = 187
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 10/170 (5%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V A PT+ ++GL CD N +A+N L +K+RDV+K L + + + + D +
Sbjct: 17 GKVFAYPTEAVFGLGCDPDNEQAVNKLLALKQRDVSKGLILVGDNYSQLLPYVDDSAIKM 76
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E+ PGP+T + +S+ + +AVR+ H ++ L + + PL TS
Sbjct: 77 TKRTEIFSSWPGPITWLLPKSKTAPSWVTGESEFIAVRVSAHPLIKDLCQRANKPLVSTS 136
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDG--GIISNPERF-----GSTIVD 206
AN + P L +E +S ++IDG G +P + G TI D
Sbjct: 137 ANTAGHPPALSADEVTSYFSNQVILIDGSLGGSRSPSKIRHGHSGQTIRD 186
>sp|P32579|SUA5_YEAST tRNA threonylcarbamoyladenosine biosynthesis protein SUA5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SUA5 PE=1 SV=1
Length = 426
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 30/227 (13%)
Query: 27 SIVKVTDPK--AALLAAQCLKKGC--VVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
S+ +TDP+ AAL+ A + + VA PT+T+YGL A N ++ +Y K R +
Sbjct: 39 SLPTITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSD 98
Query: 83 KPLAICVSEITDI-------PKWADTH------TVSFELLAELLPGPVTIVF--NRSEHL 127
PL VS I + P + T ++ L++ L PGP+TI+ SEH
Sbjct: 99 NPLITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHS 158
Query: 128 NLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQ 184
L + AVRIP + R L+ L D+P+A SAN S PS TL + + L +
Sbjct: 159 ALSKLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVYHDLKDK 218
Query: 185 LSVVIDGGIISNPERFG--STIVDLSEENVYSIVR-KGVCYDKILKI 228
+ +++DGG + G ST+VD N +++R G Y++I+K+
Sbjct: 219 IPIILDGGAC----KVGVESTVVD-GLCNPPTLLRPGGFTYEEIVKL 260
>sp|Q0I0R7|RIMN_SHESR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain MR-7) GN=rimN PE=3 SV=1
Length = 188
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PT+ +YGL CD N AI L +K+R K L + SE + + + D +S
Sbjct: 16 GGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQLSA 75
Query: 107 ELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E L PGP T V H++ L +AVR+ H+ +R L + + PL TS
Sbjct: 76 EQLEFAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKPLVSTS 135
Query: 164 ANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVD 206
AN + E L +E ++ ++ G + +R STI+D
Sbjct: 136 ANLAGEDPALSGDEILNAFEGKIDALVLGSL--GEQRQPSTIID 177
>sp|Q0HPA1|RIMN_SHESM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain MR-4) GN=rimN PE=3 SV=1
Length = 188
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PT+ +YGL CD N AI L +K+R K L + SE + + + D +S
Sbjct: 16 GGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQLSA 75
Query: 107 ELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E L PGP T V H++ L +AVR+ H+ +R L + + PL TS
Sbjct: 76 EQLEFAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKPLVSTS 135
Query: 164 ANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVD 206
AN + E L +E ++ ++ G + +R STI+D
Sbjct: 136 ANLAGEDPALSGDEILNAFEGKIDALVLGSL--GEQRQPSTIID 177
>sp|A0KR66|RIMN_SHESA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain ANA-3) GN=rimN PE=3 SV=1
Length = 188
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PT+ +YGL CD N AI L +K+R K L + SE + + + D +S
Sbjct: 16 GGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQLSA 75
Query: 107 ELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E L PGP T V H++ L +AVR+ H +R L + + PL TS
Sbjct: 76 EQLEFAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSAHDGVRALCQALGKPLVSTS 135
Query: 164 ANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVD 206
AN + E L +E ++ ++ G + +R STI+D
Sbjct: 136 ANLAGEDPALSGDEILNAFEGKIDALVLGAL--GEQRQPSTIID 177
>sp|B0TLD6|RIMN_SHEHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella halifaxensis (strain HAW-EB4) GN=rimN PE=3
SV=1
Length = 187
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 15/186 (8%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A+ +++G V+A PT+ +YGL CD N AI L EIK R K L + + + + D
Sbjct: 10 AELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYID 69
Query: 101 THTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
+S E LA + PGP T + L+ L+ + +AVR+ H+ ++ L ++
Sbjct: 70 ESQLSAEQLAFVHSKWPGPFTFIMPVKPGLSNLLSGSFDSIAVRVTAHEGVKALCAAINK 129
Query: 158 PLALTSANESNEPSTLCI----NEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVY 213
P+ TSAN + + L +F+ + + L V+ D GI ++P STI+D V
Sbjct: 130 PIVSTSANLTGQDPALSGAAVKQQFEGIIAGL-VIGDLGIQASP----STIIDAKSGQV- 183
Query: 214 SIVRKG 219
+RKG
Sbjct: 184 --IRKG 187
>sp|P45831|Y1136_MYCLE Uncharacterized protein ML1136 OS=Mycobacterium leprae (strain TN)
GN=ML1136 PE=3 SV=1
Length = 220
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 11/213 (5%)
Query: 24 KMCSIVKVTDP----KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKR 79
+M + DP + A LK G +V +PTDT+YG+ DA + A+ L K R
Sbjct: 3 RMNEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGR 62
Query: 80 DVNKPLAICVSEITDIPKWADTH-TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKV 138
+ P+ + V I T + EL+ PG +++V + LN +L V
Sbjct: 63 GRDMPVGVLVGSWHTIEGLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHGTV 122
Query: 139 AVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQL-SVVIDGGIISNP 197
+R+P H +LL + P+A++SAN S +P+ + ++ + +L V +D G +
Sbjct: 123 MLRMPLHSVAIELLCEV-GPMAVSSANVSGQPAAVDVDGARGQLGELVGVYLDAG--PSA 179
Query: 198 ERFGSTIVDLSEENVYSIVRKG-VCYDKILKIL 229
++ STIVDL+E I+R G V +I ++L
Sbjct: 180 QQAASTIVDLTEAT-PRILRAGPVSVARIAEVL 211
>sp|Q8EKQ3|RIMN_SHEON tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella oneidensis (strain MR-1) GN=rimN PE=3 SV=1
Length = 188
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS- 105
G V+A PT+ +YGL CD N AI L +K+R K L + SE + + + D ++
Sbjct: 16 GGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDESQLTD 75
Query: 106 --FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
EL PGP T V H++ L +AVR+ H+ +R L + + PL TS
Sbjct: 76 EQLELAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKPLVSTS 135
Query: 164 ANESNEPSTLCINEFQKLW-SQLSVVIDGGIISNPERFGSTIVD 206
AN + E L +E ++ ++ ++ G + +R STI+D
Sbjct: 136 ANLAGEDPALSGDEILNVFEGKIDALVLGQL--GEQRQPSTIID 177
>sp|Q10618|Y1301_MYCTU Uncharacterized protein Rv1301/MT1340 OS=Mycobacterium tuberculosis
GN=Rv1301 PE=3 SV=1
Length = 217
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 25/202 (12%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +K G +V +PTDT+YG+ DA +S A+ L K R + P+ + V W
Sbjct: 20 AVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVG------SW- 72
Query: 100 DTHTV----------SFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
HT+ + EL+ PG +++V ++ L +L V +R+P H
Sbjct: 73 --HTIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAI 130
Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLS 208
+LL+ + P+A++SAN S P + + + +L ++V +D G + ++ GSTIVDL+
Sbjct: 131 ELLREV-GPMAVSSANISGHPPPVDAEQARSQLGDHVAVYLDAG--PSEQQAGSTIVDLT 187
Query: 209 EENVYSIVRKG-VCYDKILKIL 229
++R G V ++I ++L
Sbjct: 188 GAT-PRVLRPGPVSTERIAEVL 208
>sp|B1KCX0|RIMN_SHEWM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rimN
PE=3 SV=1
Length = 185
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
Q ++ G VVA PT+ +YGL CD N AI L IKKR K L + S+ + + D
Sbjct: 11 QVIESGGVVAYPTEAVYGLGCDPDNDAAITKLLAIKKRPWEKGLILVASDYQQLLPYIDD 70
Query: 102 HTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ E + PGP T + ++ L + +AVR+ DH ++ + + + P
Sbjct: 71 SQLTEEQRERVFSKWPGPFTFIMPIKPGISNLLCGSFNSLAVRVSDHPTIQAICQQLGKP 130
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVD 206
L TSAN S E + E K ++ ++ G + +R STI+D
Sbjct: 131 LVSTSANHSGEEPAMSHEEILAKFEGEIDALVAGSL--GEQRKPSTIID 177
>sp|A8GYH9|RIMN_SHEPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=rimN PE=3 SV=1
Length = 187
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
AA+ +++G V+A PT+ +YGL CD N +AIN L +IK+R K L + + + +
Sbjct: 9 AAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYI 68
Query: 100 DTHTVSFELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D ++ + LA PGP T + L+ L+ +AVR+ H ++ L +
Sbjct: 69 DESQLNAQQLAFAQSKWPGPFTFIMPVKPGLSKLLSGAFDSIAVRVTAHAGVKALCAAIH 128
Query: 157 SPLALTSANESN-EP--STLCI-NEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
P+ TSAN S EP S L + +F+ + S L VV + G ++P STI+D V
Sbjct: 129 KPIVSTSANLSGQEPALSPLAVKQQFEGIISGL-VVGELGSQASP----STIIDARSGTV 183
Query: 213 YSIVRKG 219
+R+G
Sbjct: 184 ---IREG 187
>sp|O94530|SUA5_SCHPO tRNA threonylcarbamoyladenosine biosynthesis protein sua5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sua5 PE=3 SV=1
Length = 408
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI--------PKWA-- 99
VA PT+T+YGL DA ++A+ +Y+ K R + PL + V+ + + PK
Sbjct: 56 VAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLSAYPKAKSE 115
Query: 100 ---DTH-------TVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTK----VAVRIPDH 145
H V L+ + PGP++I+ + N ++P VT AVR+P H
Sbjct: 116 VKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQH 175
Query: 146 KFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
L+ + DSPLA SAN S PS TL + + L ++ +++DGG
Sbjct: 176 PVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGG 223
>sp|A7N129|RIMN_VIBHB tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
harveyi (strain ATCC BAA-1116 / BB120) GN=rimN PE=3 SV=1
Length = 185
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
+ L+ G V+A PT+ ++G+ CD N +AI L E+K+R V K L + + + + D
Sbjct: 9 KALQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDE 68
Query: 102 HTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
++ E L ++ PGP T + S+ ++ ++ +AVR+ DH ++++ P
Sbjct: 69 SQLTQEQLDQVHATWPGPYTWIMPASDKVSHWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128
Query: 159 LALTSANESNEPSTLCINEF-QKLWSQLSVVIDG 191
L TSAN + +P + E ++L +L ++ G
Sbjct: 129 LTSTSANLTGQPPCMTTEEVEEQLGDRLVAILRG 162
>sp|Q87KE2|RIMN_VIBPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rimN PE=3 SV=1
Length = 185
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
L++G V+A PT+ ++G+ CD N AI L ++K+R V K L + + + + D
Sbjct: 10 ALQQGEVIAYPTEGVFGVGCDPDNPDAIQKLLDLKQRPVEKGLILIAASYEQLLPYIDES 69
Query: 103 TVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
++ E LA + PGP T + S+ ++ ++ +AVR+ DH ++++ PL
Sbjct: 70 QLTPEQLATVHATWPGPYTWIMPASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKPL 129
Query: 160 ALTSANESNEPSTLCINEF-QKLWSQLSVVIDG 191
TSAN S P + E Q+L +L ++ G
Sbjct: 130 TSTSANLSGLPPCMTTEEVEQQLGDKLVAILRG 162
>sp|A8AQH7|RIMN_CITK8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=rimN PE=3 SV=2
Length = 190
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE 91
TD AA +A L K CV+A PT+ ++G+ CD + A+N L E+K+R V K L + +
Sbjct: 7 TDAIAAAVAV--LHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAAN 64
Query: 92 ITDIPKWADTHTVS---FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFL 148
+ + D ++ E + PGPVT VF L +AVR+ DH +
Sbjct: 65 FEQLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLV 124
Query: 149 RQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDG 191
L + PL TSAN + P + E + + V++G
Sbjct: 125 VSLCQAYGKPLVSTSANLTGLPPCRTVEEVRAQFGADFPVVEG 167
>sp|Q6LLJ9|RIMN_PHOPR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Photobacterium profundum GN=rimN PE=3 SV=2
Length = 185
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 43 CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTH 102
L+ G V+A PT+ ++G+ CD N +A+ L +K+R + K L + + + + D
Sbjct: 10 ALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANYQQLQPYIDDA 69
Query: 103 TVS---FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
+S + + PGPVT V + ++ L T +AVR+ DH +++L P+
Sbjct: 70 QLSDLQKQKIFSTWPGPVTWVMPVKKDISPLLTGKFTSIAVRVSDHPLVQKLCHQFGKPI 129
Query: 160 ALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNPERFGSTIVDLSEENVYSIV 216
TSAN + P + E Q +L LS +++G G NP D +++
Sbjct: 130 TSTSANLTGLPPCKTVTEVQNQLGEHLSAILEGETGGRENPTEIRDAFSD-------TVL 182
Query: 217 RKG 219
R+G
Sbjct: 183 RQG 185
>sp|A3QJE8|RIMN_SHELP tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=rimN PE=3 SV=1
Length = 185
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 46 KGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS 105
+G V+A PT+ +YGL CD N +AI L ++K+R K L + S+ + + D+ ++
Sbjct: 15 QGGVIAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDFNQLTPYIDSSVLT 74
Query: 106 FELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
L PGP T + + L+ L+ +AVR+ +H ++ L + + P+ T
Sbjct: 75 EAQLQSAFDKWPGPFTFIMPKRPGLSSLLSGQFDSLAVRVSNHPGVQALCQALGKPIVST 134
Query: 163 SANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDL 207
SAN + E L E ++ ++ ++ G + + P+ STI+D+
Sbjct: 135 SANLTGEEPALTPEEVIRQFDGKIDGLVAGSLGAEPKP--STIIDV 178
>sp|Q9PEV9|RIMN_XYLFA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain 9a5c) GN=rimN PE=3 SV=1
Length = 187
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G V+A PT+ ++GL CD A++ L IK+R K L + +E+ + W
Sbjct: 10 AVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQDWL 69
Query: 100 DTHTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D T+S E L E+ PGP T V S + + +AVRI H + L + +
Sbjct: 70 DLDTLSPERLHEVQTSWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWN 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNP 197
L TSAN + +P + L L+ ++DG G ++ P
Sbjct: 130 MALISTSANVAGQPPARRREDLDPSLLPHLAGIVDGPTGGLAQP 173
>sp|A6WHB6|RIMN_SHEB8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS185) GN=rimN PE=3 SV=1
Length = 188
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 46 KGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS 105
+G V+A PT+ +YGL CD N AI L +K+R K L + S+ + + D ++
Sbjct: 15 QGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLT 74
Query: 106 FELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
E L PGP T V H++ L +AVR+ H ++ L + ++ PL T
Sbjct: 75 AEQLEFAFSKWPGPFTFVMPIKAHVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVST 134
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVD 206
SAN + E L E + + + ID ++ +R STI+D
Sbjct: 135 SANLAGEDPALTAAE---ILADFTGKIDALVLGELGEQRQPSTIID 177
>sp|A3CYL0|RIMN_SHEB5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=rimN PE=3 SV=1
Length = 188
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 46 KGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS 105
+G V+A PT+ +YGL CD N AI L +K+R K L + S+ + + D ++
Sbjct: 15 QGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLT 74
Query: 106 FELLA---ELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
E L PGP T V H++ L +AVR+ H ++ L + ++ PL T
Sbjct: 75 AEQLEFAFSKWPGPFTFVMPIKAHVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVST 134
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVD 206
SAN + E L E + + + ID ++ +R STI+D
Sbjct: 135 SANLAGEDPALTAAE---ILADFTGKIDALVLGELGEQRQPSTIID 177
>sp|Q83AA2|RIMN_COXBU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=rimN PE=3 SV=1
Length = 186
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +CL++G V+A PT+ +YGL CD N A+ L IKKR + K + SE +
Sbjct: 11 AVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPL- 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
T + + LA + PGP T F S+ + + +A+R+ H + L +
Sbjct: 70 -TEPIDPKALARVFDTWPGPFTWTFPASKEAPHWITGQHSTIAIRVTAHPLAKLLCQRFA 128
Query: 157 SPLALTSANESNEP 170
PL +SAN+ EP
Sbjct: 129 GPLISSSANQEGEP 142
>sp|A1S1K5|RIMN_SHEAM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
GN=rimN PE=3 SV=2
Length = 187
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
++ G VVA PT+ +YGL CD N AI L +K+R K L + S + + D
Sbjct: 13 IESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSR 72
Query: 104 VSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
V+ L PGP T V ++ L +AVR+ H+ +R + PL
Sbjct: 73 VTEAQLQAAFDKWPGPFTFVIPAKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKPLV 132
Query: 161 LTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
TSAN + E L + E Q +L ++ V+ G + + + STI+D+ +++ R+G
Sbjct: 133 STSANLAGEQPALTLAEVQTQLGDKIDAVVLGALGQSCQP--STIIDIQTGHIF---RQG 187
>sp|A9N9G8|RIMN_COXBR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
GN=rimN PE=3 SV=1
Length = 186
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +CL++G V+A PT+ +YGL CD N A+ L IKKR + K + SE +
Sbjct: 11 AVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPL- 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
T + + LA + PGP T F S+ + + +A+R+ H + L +
Sbjct: 70 -TEPIDPKALARVFDTWPGPFTWTFPASKEAPHWITGQHSTIAIRVTAHPLAKLLCQRFA 128
Query: 157 SPLALTSANESNEP 170
PL +SAN+ EP
Sbjct: 129 GPLISSSANQEGEP 142
>sp|Q3IDH7|RIMN_PSEHT tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rimN PE=3 SV=1
Length = 187
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 6/187 (3%)
Query: 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
++D A CL +G V+ PT+ +YGL CD N +A+ L IK+R V K L +
Sbjct: 1 MSDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIKQRPVEKGLILIAD 60
Query: 91 EITDIPKWADTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKF 147
+ K+ D + + A++ P +T V +++ L +AVR+ +H
Sbjct: 61 NYGQLLKYVDDAKIPMDKRADIFSSWPNAITWVMPAAKNTPKWLTGQYDTIAVRVTNHPT 120
Query: 148 LRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVD 206
+++L + PL TSAN S + + L I E + ++ Q+ +D + N + STI D
Sbjct: 121 VKRLCQEFGKPLVSTSANLSGQNTVLSIAEAKSQFTEQIGYYVDEPLGGNTQP--STIKD 178
Query: 207 LSEENVY 213
V+
Sbjct: 179 AMNGKVF 185
>sp|Q87AQ5|RIMN_XYLFT tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
GN=rimN PE=3 SV=1
Length = 187
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G V+A PT+ ++GL CD A++ L IK+R K L + +E+ + W
Sbjct: 10 AVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQDWL 69
Query: 100 DTHTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D T+S E L E+ PGP T V S + + +AVRI H + L + +
Sbjct: 70 DLDTLSPERLHEVQASWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWN 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNP 197
L TSAN + +P + L L+ ++DG G ++ P
Sbjct: 130 MALISTSANVAGQPPARRREDLDPSLLPHLAGIVDGPTGGLAQP 173
>sp|B2I8S9|RIMN_XYLF2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain M23) GN=rimN PE=3 SV=2
Length = 187
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G V+A PT+ ++GL CD A++ L IK+R K L + +E+ + W
Sbjct: 10 AVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQDWL 69
Query: 100 DTHTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D T+S E L E+ PGP T V S + + +AVRI H + L + +
Sbjct: 70 DLDTLSPERLHEVQASWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWN 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNP 197
L TSAN + +P + L L+ ++DG G ++ P
Sbjct: 130 MALISTSANVAGQPPARRREDLDPSLLPHLAGIVDGPTGGLAQP 173
>sp|Q8P4F2|RIMN_XANCP tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=rimN PE=3 SV=1
Length = 187
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L +G V+A PT+ ++GL CD A+ L EIK+R V+K + + S + + W
Sbjct: 10 AVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQDWI 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D + E L +L PGP T + + + + +AVRI H + L K
Sbjct: 70 DIAALGSEQLTAVLAQWPGPHTWILPVTAQAPRWVTGDHDGLAVRISAHPVVAALCKAWG 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNP 197
+PL TSAN + EP L +++ V+DG G ++ P
Sbjct: 130 APLVSTSANLAGEPPARSRAALDPALLARIDGVLDGEVGGLAQP 173
>sp|B0RWR5|RIMN_XANCB tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. campestris (strain B100)
GN=rimN PE=3 SV=2
Length = 187
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L +G V+A PT+ ++GL CD A+ L EIK+R V+K + + S + + W
Sbjct: 10 AVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQDWI 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D + E L +L PGP T + + + + +AVRI H + L K
Sbjct: 70 DIAALGSEQLTAVLAQWPGPHTWILPVTAQAPRWVTGDHDGLAVRISAHPVVAALCKAWG 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNP 197
+PL TSAN + EP L +++ V+DG G ++ P
Sbjct: 130 APLVSTSANLAGEPPARSRAALDPALLARIDGVLDGEVGGLAQP 173
>sp|Q4UQ07|RIMN_XANC8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=rimN PE=3 SV=1
Length = 187
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L +G V+A PT+ ++GL CD A+ L EIK+R V+K + + S + + W
Sbjct: 10 AVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQDWI 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D + E L +L PGP T + + + + +AVRI H + L K
Sbjct: 70 DIAALGSEQLTAVLAQWPGPHTWILPVTAQAPRWVTGDHDGLAVRISAHPVVAALCKAWG 129
Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG--GIISNP 197
+PL TSAN + EP L +++ V+DG G ++ P
Sbjct: 130 APLVSTSANLAGEPPARSRAALDPALLARIDGVLDGEVGGLAQP 173
>sp|A1SR31|RIMN_PSYIN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Psychromonas ingrahamii (strain 37) GN=rimN PE=3 SV=1
Length = 191
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A + LK V+A PT++++GL CD AI + +K+R K L + + I + K+A
Sbjct: 13 ALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLEKYA 72
Query: 100 DTHTVS---FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D ++ ++ + PGP+T + ++L+ ++ + VAVR+ H +RQ+ D
Sbjct: 73 DFSLLTAAQLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTAHPIVRQICLAFD 132
Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQ---LSVVIDGGI--ISNPERF 200
P+ TSAN S+ + L + K++ L++VID + +S P +
Sbjct: 133 KPIISTSANLSSLEAALSSQQVNKMFKSNTLLNLVIDAPVSGLSTPTQI 181
>sp|Q0A5B4|RIMN_ALHEH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rimN
PE=3 SV=1
Length = 190
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 42 QC---LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
QC L+ G VVA PT+ +YGL CD + A+ L +K+RD K L + S ++ + W
Sbjct: 13 QCAARLQAGGVVAYPTEAVYGLGCDPGDPAAVATLLTLKRRDPGKGLILIASRVSQLSPW 72
Query: 99 ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
+ +LA PGP T + + H + KVAVR+ H L +
Sbjct: 73 LGDAPLPQAVLAS-WPGPNTWLLPAAPHTPAWITGGRAKVAVRVTAHPVAAALCEAFGGA 131
Query: 159 LALTSANESNEPSTLCINEFQ 179
+ TSAN +P + +
Sbjct: 132 IVSTSANRDGQPPARSATQVR 152
>sp|A0KEX6|RIMN_AERHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC
7966 / NCIB 9240) GN=rimN PE=3 SV=1
Length = 186
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 39 LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
LA L++ V+A T+ ++GL CD + A++ L IK+R V K L + +++ + +
Sbjct: 7 LAVAALQRDGVIAYATEAVFGLGCDPDSESAVHRLLAIKQRPVEKGLILIAADLAQLQDY 66
Query: 99 ADTHTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLM 155
D ++ E LA + PGP T + + L T +AVR+ H ++ L +
Sbjct: 67 IDLDQLTSEQLARVEASWPGPFTWIMPARSNTPAWLTGQFTTLAVRVTAHPQVQALCRAF 126
Query: 156 DSPLALTSAN-ESNEPSTLCINEFQKLWSQLSVVIDG--GIISNP 197
PL TSAN EP+ + + L SQL+ ++ G G +NP
Sbjct: 127 GKPLVSTSANLTGEEPARRVADIGELLASQLAYILPGEVGGQANP 171
>sp|Q08A23|RIMN_SHEFN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella frigidimarina (strain NCIMB 400) GN=rimN
PE=3 SV=1
Length = 188
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 41 AQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD 100
A +++G V+A PT+ ++GL CD N AI L +K+R K L + S + + D
Sbjct: 10 ATTIQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQRPWQKGLILVASSFEQLLPYLD 69
Query: 101 THTVS---FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
++ + PGP T V H++ L +AVR+ H +R+L ++
Sbjct: 70 ITQLTEQQLQFAQSKWPGPFTFVMPIQSHVSKLLCGEFDSIAVRVSAHPVVRELCDTLNK 129
Query: 158 PLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVDLSEENVYSI 215
PL TSAN + E + + Q + + S ID I+ +R STI+D I
Sbjct: 130 PLVSTSANLAGEQPVV---DAQHIITDFSDKIDALILGKLGEQRQPSTIIDARSGQ---I 183
Query: 216 VRKG 219
+R G
Sbjct: 184 LRNG 187
>sp|A9KH21|RIMN_COXBN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rimN
PE=3 SV=1
Length = 186
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A +CL++G V+A PT+ +YGL CD N A+ L IKKR + K + SE +
Sbjct: 11 AVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPL- 69
Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
T + + LA + PGP T F S+ + + +A+R+ H + L +
Sbjct: 70 -TEPIDPKALARVFDTWPGPFTWTFPASKEAPHWITGQHSTIAIRVTAHPLAKLLCQRFA 128
Query: 157 SPLALTSANESNEP 170
PL +SAN+ P
Sbjct: 129 GPLISSSANQEGGP 142
>sp|Q12TA0|RIMN_SHEDO tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=rimN PE=3 SV=1
Length = 188
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 44 LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
+ +G V+A PT+ +YGL CD N +AI L +K+R K L + S + + D
Sbjct: 13 IAQGGVIAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYVDVAQ 72
Query: 104 VS---FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
++ + PGP T V H++ +L +AVR+ H +R+L ++ PL
Sbjct: 73 LTQAQLDFAHSKWPGPFTFVMPVKSHVSNKLRGEFDSIAVRVSAHPIVRELCDSLNKPLV 132
Query: 161 LTSANESNEPSTLCINEF 178
TSAN + + L +
Sbjct: 133 STSANLAGQDPVLTSRQI 150
>sp|B0U4N0|RIMN_XYLFM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xylella fastidiosa (strain M12) GN=rimN PE=3 SV=2
Length = 187
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 40 AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
A L++G V+A PT+ ++GL CD A++ L IK+R K L + +E+ + W
Sbjct: 10 AVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQDWL 69
Query: 100 DTHTVSFELLAEL---LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
D T+S E L E+ PGP T V S + + +AVRI H + L + +
Sbjct: 70 DLDTLSPERLHEVQASWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWN 129
Query: 157 SPLALTSANESNE-PSTLCINEFQKLWSQLSVVIDG--GIISNP 197
L TSAN + + P+ + L L+ ++DG G ++ P
Sbjct: 130 MALISTSANVAGQSPARRREDLDPSLLPHLAGIVDGPTGGLAQP 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,098,612
Number of Sequences: 539616
Number of extensions: 3480467
Number of successful extensions: 9314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8983
Number of HSP's gapped (non-prelim): 181
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)