Query psy198
Match_columns 245
No_of_seqs 138 out of 1339
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 21:07:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7j_A Protein YCIO, protein T 100.0 4.2E-54 1.5E-58 369.9 21.3 190 30-223 10-202 (206)
2 2eqa_A Hypothetical protein ST 100.0 7.7E-54 2.6E-58 393.5 21.7 197 30-229 10-208 (352)
3 1jcu_A Conserved protein MTH16 100.0 7.7E-54 2.6E-58 368.8 17.2 190 30-224 9-198 (208)
4 1hru_A YRDC gene product; prot 100.0 6.7E-52 2.3E-56 351.5 14.0 181 31-217 4-188 (188)
5 3vth_A Hydrogenase maturation 100.0 1E-43 3.5E-48 353.6 18.1 204 33-242 201-415 (761)
6 3l7v_A Putative uncharacterize 100.0 1.5E-44 5.1E-49 324.1 0.9 160 33-194 42-220 (295)
7 3ttc_A HYPF, transcriptional r 100.0 6E-41 2.1E-45 328.7 20.8 196 34-242 111-318 (657)
8 4g9i_A Hydrogenase maturation 100.0 5.9E-35 2E-39 291.6 15.0 207 33-242 199-413 (772)
9 3ven_A O-carbamoyltransferase 98.4 8.4E-07 2.9E-11 86.0 9.0 147 34-192 396-567 (576)
10 1t6s_A Conserved hypothetical 57.4 22 0.00077 28.4 6.1 64 12-75 15-85 (162)
11 2heo_A Z-DNA binding protein 1 43.1 19 0.00066 23.9 3.0 44 18-62 24-67 (67)
12 2z99_A Putative uncharacterize 42.3 43 0.0015 28.1 5.7 66 12-78 23-94 (219)
13 1hq0_A CNF1, cytotoxic necroti 39.4 8.1 0.00028 34.0 0.7 34 132-171 116-149 (295)
14 1snn_A DHBP synthase, 3,4-dihy 32.1 82 0.0028 26.6 5.8 59 36-99 3-67 (227)
15 1g57_A DHBP synthase, 3,4-dihy 29.2 1.1E+02 0.0039 25.5 6.2 41 34-74 13-59 (217)
16 1tks_A 3,4-dihydroxy-2-butanon 29.1 1.1E+02 0.0039 25.3 6.1 39 36-74 7-51 (204)
17 1iuq_A Glycerol-3-phosphate ac 23.9 87 0.003 28.4 4.8 51 33-84 208-267 (367)
18 3mio_A DHBP synthase, 3,4-dihy 23.7 1.6E+02 0.0055 24.4 6.1 40 36-75 6-51 (206)
19 2b0l_A GTP-sensing transcripti 22.2 1E+02 0.0034 22.1 4.1 54 21-77 45-100 (102)
20 2lnb_A Z-DNA-binding protein 1 21.4 77 0.0026 22.4 3.1 29 33-61 47-75 (80)
21 3p3d_A Nucleoporin 53; structu 21.0 60 0.0021 25.1 2.7 40 36-79 71-110 (132)
22 1u7i_A Hypothetical protein; s 20.1 1.4E+02 0.0047 21.7 4.7 32 28-59 83-115 (136)
No 1
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=4.2e-54 Score=369.86 Aligned_cols=190 Identities=21% Similarity=0.388 Sum_probs=175.8
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL 109 (245)
Q Consensus 30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~ 109 (245)
++++.+.+++|+++|++||+|+|||||+|||+|+|+|++||+|||++|+|+.+|||+++++|++++++|+++++..++++
T Consensus 10 ~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~ll 89 (206)
T 1k7j_A 10 DNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM 89 (206)
T ss_dssp SSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhcCCHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred HhhCCCCEEEEecCCCcccc-ccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCC-CCCHHHHHh-hcCCcc
Q psy198 110 AELLPGPVTIVFNRSEHLNL-ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQK-LWSQLS 186 (245)
Q Consensus 110 ~~~wPGplTlIl~~~~~lp~-~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~-~~~~e~~~~-~~~~vd 186 (245)
+++||||+|+|+++++.+|+ .++++.+|||||+|+||++++|++.+|.||++||||+||+++ .++.+++.+ +.+.+|
T Consensus 90 ~~~~PGp~T~il~~~~~~p~~~~~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN~sG~~~p~~~~~~~~~~l~~~vd 169 (206)
T 1k7j_A 90 KNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVD 169 (206)
T ss_dssp HTSCSSSEEEEEEBCTTSCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHHHHHTTTCS
T ss_pred HcCCCCCeEEEEECCCCCCHHHcCCCCCeEEEEecCCHHHHHHHHHhCCceEECCcccCCCCCCCCCHHHHHHHhCCCCc
Confidence 99999999999999999998 566688999999999999999999999999999999999975 689999865 557899
Q ss_pred EEEeCCCCCCCCCCCCeEEEEEeCCceEEEecCCChH
Q psy198 187 VVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD 223 (245)
Q Consensus 187 ~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~ 223 (245)
+|+|+|.+. ..+|||||++ ++.+++||+|.++.
T Consensus 170 ~ild~g~~~---~~~STVvd~~-~~~~~ilR~G~g~~ 202 (206)
T 1k7j_A 170 LIIHGGYLG---QKPTTVIDLT-DDTPVVVREGVGDV 202 (206)
T ss_dssp EEEECCCCC---SCCCEEEECG-GGCCEEEECCSSCS
T ss_pred EEEeCCCCC---CCCCeEEEee-CCcEEEEEeCCCCh
Confidence 999998665 6899999998 77899999999754
No 2
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=100.00 E-value=7.7e-54 Score=393.46 Aligned_cols=197 Identities=29% Similarity=0.451 Sum_probs=182.0
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCcccccc-ccCchHHHH
Q psy198 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVSFEL 108 (245)
Q Consensus 30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~-~~~~~~~~l 108 (245)
++++.+.+++|+++|++||+|+|||||+|||+|+++|++||+|||++|+|+.+|||+++++|++++.+|+ .+++..+++
T Consensus 10 ~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i~~~~~~L 89 (352)
T 2eqa_A 10 LNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEI 89 (352)
T ss_dssp SSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhCCHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999 788888899
Q ss_pred HHhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccE
Q psy198 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSV 187 (245)
Q Consensus 109 ~~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~ 187 (245)
+++|||||+|||+|+++.+|+.++++.+|||||+|+||++++|++.+|.||++||||+||++++++.+++. ++.+.+|+
T Consensus 90 l~~fwPGPlTlIlp~~~~lp~~v~~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN~SG~p~~t~~~~v~~~l~~~vd~ 169 (352)
T 2eqa_A 90 AQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDV 169 (352)
T ss_dssp HHHHCSSSEEEEEEECTTSCHHHHTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSSCTTSCCCCSHHHHHHHHTTTSSE
T ss_pred HHhCCCCCEEEEEECCCcCCHhHcCCCCeEEEEccCcHHHHHHHHHhCCcEEECccccCCCCCCCCHHHHHHHhcCcCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 45579999
Q ss_pred EEeCCCCCCCCCCCCeEEEEEeCCceEEEecCCChHHHHHHH
Q psy198 188 VIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKIL 229 (245)
Q Consensus 188 ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~~~~l 229 (245)
|+|+|++. .+.+|||||++ ++.+++||+|.+..+.++.+
T Consensus 170 iLdgg~~~--~g~~STVvd~~-~~~~~iLR~G~i~~e~i~~~ 208 (352)
T 2eqa_A 170 IIDGGHTF--FGVESTIINVT-VEPPVLLRPGPFTIEELKKL 208 (352)
T ss_dssp EEECCCCS--SCSCCEEEECS-CCC-EEEECCSSCHHHHHHH
T ss_pred EecCCccC--CCCCCeeEECC-CCceEEEcCCCCCHHHHHHH
Confidence 99999976 38999999998 77899999999866555443
No 3
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=100.00 E-value=7.7e-54 Score=368.76 Aligned_cols=190 Identities=31% Similarity=0.532 Sum_probs=177.4
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198 30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL 109 (245)
Q Consensus 30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~ 109 (245)
++++.+.+++|+++|++||+|+|||||+|||+|+|+|++|++|||++|+|+.+|||+++++|++++.+|+++++..++++
T Consensus 9 ~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~~~~~~~~ll 88 (208)
T 1jcu_A 9 KNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDAMELM 88 (208)
T ss_dssp SCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEECCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHH
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhcCCccEEE
Q psy198 110 AELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVI 189 (245)
Q Consensus 110 ~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~~~vd~iv 189 (245)
++|||||+|+|+|+++.+|+.++++.+|||||+|+||++++|++.+ ||++||||+||++++++.+++.+.++.+|+++
T Consensus 89 ~~~wPgp~T~il~~~~~~p~~v~~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSAN~sG~p~~~~~~~~~~~l~~vd~il 166 (208)
T 1jcu_A 89 ERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLDAVDLVL 166 (208)
T ss_dssp HHSCSSSEEEEEEECSCCCHHHHTTTTEEEEECCSCHHHHHHHHHS--CEEEEECCSSSCCSCSCHHHHHHHSSSSEECC
T ss_pred HhcCCCCeEEEEeCCccCCHhhcCCCCeEEEEeCCCHHHHHHHHHh--HHHccCcccCCCCCCCCHHHHHHHhCcCCEEE
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999865448899999
Q ss_pred eCCCCCCCCCCCCeEEEEEeCCceEEEecCCChHH
Q psy198 190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDK 224 (245)
Q Consensus 190 d~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~ 224 (245)
|+|++. .+.+|||||++ ++++++||+|.++.+
T Consensus 167 d~g~~~--~~~~STVvd~~-~~~~~ilR~G~~~~~ 198 (208)
T 1jcu_A 167 DAGDCL--DMEPSTVIDLT-VNPPRVLRRGKGPLD 198 (208)
T ss_dssp SSCCCS--CSCCCEEECCC-SSSCCEEECCCSSCC
T ss_pred eCCCcc--CCCCCEEEEee-CCcEEEEecCCCCHH
Confidence 999765 38899999998 778999999998653
No 4
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=6.7e-52 Score=351.47 Aligned_cols=181 Identities=28% Similarity=0.392 Sum_probs=166.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccc---cCchHHH
Q psy198 31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD---THTVSFE 107 (245)
Q Consensus 31 ~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~---~~~~~~~ 107 (245)
+++.+.+++|+++|++||+|+|||||+|||+|+|+|++|++|||++|+|+.+|||+++++|++++.+|+. +++..++
T Consensus 4 ~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 1hru_A 4 NLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRE 83 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCCHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999998 7777778
Q ss_pred HHHhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhc-CCcc
Q psy198 108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW-SQLS 186 (245)
Q Consensus 108 l~~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~-~~vd 186 (245)
+++++||||+|+|+++++.+|+.++++.+|||||+|+||++++|++.+|.||++||||+||++++++.+++.+.+ +.+
T Consensus 84 ~~~~~~pgP~tlil~~~~~~p~~v~~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~p~~~~~~~~~~~l~~~v- 162 (188)
T 1hru_A 84 TIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAF- 162 (188)
T ss_dssp HHHTTCSSSEEEEEECCTTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHHHHHCTTS-
T ss_pred HHHhCCCCCEEEEEECCCCCCHhHcCCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCCCCCCCHHHHHHHhCCCE-
Confidence 999999999999999999999999988999999999999999999999999999999999999999999986544 678
Q ss_pred EEEeCCCCCCCCCCCCeEEEEEeCCceEEEe
Q psy198 187 VVIDGGIISNPERFGSTIVDLSEENVYSIVR 217 (245)
Q Consensus 187 ~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR 217 (245)
+|+|+|.+.. +.+|||||++ ++ +|||
T Consensus 163 ~ildgg~~~~--~~~STIvd~~-~~--~ilR 188 (188)
T 1hru_A 163 PVVPGETGGR--LNPSEIRDAL-TG--ELFR 188 (188)
T ss_dssp CBCCCCCCSS--CCCCEEEETT-TS--SBCC
T ss_pred EEEeCCCCCC--CCCCeEEECc-CC--EEEC
Confidence 8889887663 7899999998 54 6766
No 5
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=100.00 E-value=1e-43 Score=353.61 Aligned_cols=204 Identities=23% Similarity=0.294 Sum_probs=181.1
Q ss_pred CHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhh
Q psy198 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL 112 (245)
Q Consensus 33 ~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~ 112 (245)
..+.+++|+++|++||+|++||||+|||+|+|+|++||+|||++|+|+ +|||++|++|++++++|+++++..+++++.
T Consensus 201 ~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~~v~~~~~~ll~~- 278 (761)
T 3vth_A 201 FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYCIVSPEEERLLLS- 278 (761)
T ss_dssp CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHBCCCHHHHHHHHS-
T ss_pred chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHccCCHHHHHHHhC-
Confidence 346899999999999999999999999999999999999999999999 999999999999999999998888889987
Q ss_pred CCCCEEEEecCCC-ccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccEEEe
Q psy198 113 LPGPVTIVFNRSE-HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVID 190 (245)
Q Consensus 113 wPGplTlIl~~~~-~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~ivd 190 (245)
||||+| |+++++ .+|+.++++.+|||||+|+||+++.|++.+|.||++||||+||+|++++.+++. ++.+.+|+|+|
T Consensus 279 ~pgPit-lL~~~~~~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~~~~~~e~~~~l~~~vD~iLd 357 (761)
T 3vth_A 279 QRRPIV-LLKKKGEKLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNEEALEKLKDIADVFLL 357 (761)
T ss_dssp TTCCEE-EEEBCSSCCCTTSSTTCSEEEEECCCSHHHHHHHHHCSSCEECEESSSTTSCCCCSHHHHHHHTTTTCSEEEE
T ss_pred CCCCEE-EEECCCCCCCHhHcCCCCeEEEEecCCHHHHHHHHHcCCeEEEcCcccCCCCCCCCHHHHHHHccCcCCEEEE
Confidence 999999 577776 799999999999999999999999999999999999999999999999999985 45579999999
Q ss_pred CCC-CCCCCCCCCeEEEEEeCCceEEEecCCChHHH--H------HHHHhCCccccCCcCC
Q psy198 191 GGI-ISNPERFGSTIVDLSEENVYSIVRKGVCYDKI--L------KILHKYHLVEKNTFPI 242 (245)
Q Consensus 191 ~g~-~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~--~------~~l~~~~~~~~~~~~~ 242 (245)
+|+ +. .+.+|||||++ ++++++||+|.++... . ..+=..|-+++|+|.+
T Consensus 358 ~~r~i~--~~~~STVvd~~-~~~~~iLR~grG~~P~~~~l~~~~~~~vla~G~~lknt~~l 415 (761)
T 3vth_A 358 NNRDIV--NRIDDSVTSFN-AGAERIIRRARGYAPQPILLKKEVKASILAVGGFYKNTFCM 415 (761)
T ss_dssp ESSCCS--SCCCCCEECEE-TTEECCSBCCTTTTTCCEECSSCCSSCEEECCCSTTBCCEE
T ss_pred CCCCcc--CCCCCeEEEEE-CCcEEEEecCCCCCCCccccCCCCCCcEEEeChhhcceEEE
Confidence 874 44 48999999998 8899999999854332 1 1223677888888864
No 6
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=100.00 E-value=1.5e-44 Score=324.13 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHH-cCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHh
Q psy198 33 DPKAALLAAQCLK-KGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAE 111 (245)
Q Consensus 33 ~~~~i~~a~~~L~-~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~ 111 (245)
+.+.+++|+++|+ +||+|+|||||+|||+| +|++||+|||++|+|+.+|||++|++|++++++|+++++..++++++
T Consensus 42 ~~~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~v~~~~~~Ll~~ 119 (295)
T 3l7v_A 42 DGNLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQLTPEIDAFYQK 119 (295)
T ss_dssp CSSCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHHHh
Confidence 4457899999999 99999999999999999 89999999999999999999999999999999999998888899999
Q ss_pred hCCCCEEE--EecCCC----ccc-------cccCCCCCe----EEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCC
Q psy198 112 LLPGPVTI--VFNRSE----HLN-------LELNPNVTK----VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLC 174 (245)
Q Consensus 112 ~wPGplTl--Il~~~~----~lp-------~~l~~~~~t----vgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~ 174 (245)
|||||+|+ |+|+++ .+| +.++++.+| ||||+|+||++++|++.+|.||++||||+||++++++
T Consensus 120 ~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~PLvaTSAN~SGep~~~~ 199 (295)
T 3l7v_A 120 HWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGKGNRGK 199 (295)
T ss_dssp HHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHHHSCTTSEEEEEESSCHHHHHHHHHHHHHHCCCCEEEECC-----CTTC
T ss_pred cCCCCceeeEEEECCccccccCCcccccchhhccCCCCCcceeeEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCCCCC
Confidence 99999975 999653 366 467788899 9999999999999999999999999999999999999
Q ss_pred HHHHH-hhcCCccEEEeCCCC
Q psy198 175 INEFQ-KLWSQLSVVIDGGII 194 (245)
Q Consensus 175 ~e~~~-~~~~~vd~ivd~g~~ 194 (245)
.+++. ++.+.+|+|+|+|++
T Consensus 200 ~ee~~~~L~~~vD~iLd~G~~ 220 (295)
T 3l7v_A 200 VEGIGERIESMVDLVIEADDY 220 (295)
T ss_dssp GGGSCHHHHHHSSEEEECHHH
T ss_pred HHHHHHHhcCcCcEEEeCCCc
Confidence 99975 455789999998763
No 7
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=100.00 E-value=6e-41 Score=328.69 Aligned_cols=196 Identities=26% Similarity=0.295 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhhC
Q psy198 34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELL 113 (245)
Q Consensus 34 ~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~w 113 (245)
.+.+++|+++|++||||++||||+|||+|+++|++||+|||++|+|+ +|||++|++|++ .+++...++++. |
T Consensus 111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~------~v~~~~~~ll~~-~ 182 (657)
T 3ttc_A 111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVAD------GLPDAARQLLTT-P 182 (657)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCT------TSCHHHHHHHTS-T
T ss_pred hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChH------HCCHHHHHHHhc-C
Confidence 56899999999999999999999999999999999999999999998 899999999998 345556688887 9
Q ss_pred CCCEEEEecCCC-ccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccEEEeC
Q psy198 114 PGPVTIVFNRSE-HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG 191 (245)
Q Consensus 114 PGplTlIl~~~~-~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~ivd~ 191 (245)
|||+|+|+++++ .+|+.++++.+|||||+|+||+++.|++.+|.||++||||+||++++++.+++. ++.+.+|+|+|+
T Consensus 183 pgPiTli~~~~~~~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~~~~~~e~~~~l~~~vD~iLd~ 262 (657)
T 3ttc_A 183 AAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQALEDLQGIADGFLIH 262 (657)
T ss_dssp TCCEEEEEGGGCTTSCTTSSTTCSEEEEECCCSHHHHHHHHHHCSCEEEEECCCTTSCCCCSHHHHHHHHTTTCSEEEEE
T ss_pred CCCEEEEEeCCcCCCCHHHCCCCCceEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCCCCCHHHHHHHhcCCCeEEEEC
Confidence 999999998876 599999999999999999999999999999999999999999999999999986 455799999998
Q ss_pred CCCCCCCCCCCeEEEEEeCCceEEEecCCChHHHH----------HHHHhCCccccCCcCC
Q psy198 192 GIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL----------KILHKYHLVEKNTFPI 242 (245)
Q Consensus 192 g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~~----------~~l~~~~~~~~~~~~~ 242 (245)
|+.. ..+.+||||| + ++++||+|.++...- ..+=..|-+++|+|.+
T Consensus 263 gr~i-~~~~dsSVV~---~-~~~ilRrgrG~~p~~~~l~~~~~~~~~vla~G~~lknt~~l 318 (657)
T 3ttc_A 263 NRDI-VQRMDDSVVR---E-SGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCL 318 (657)
T ss_dssp SSCC-CSCCCCCEEE---T-TCCEEECCTTTTTCCEECCTTCCSEEEEEECCCSSSCCCEE
T ss_pred CCcc-cCCCCCcEEE---C-CCeEEEcCCCCCCCccccCcccCCCCCEEEecccccceEEE
Confidence 8544 2589999999 4 789999998654321 1123678888888854
No 8
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=100.00 E-value=5.9e-35 Score=291.56 Aligned_cols=207 Identities=19% Similarity=0.148 Sum_probs=180.7
Q ss_pred CHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhh
Q psy198 33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL 112 (245)
Q Consensus 33 ~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~ 112 (245)
..+++++|+++|++|++|++||+|+|+|+|||+|++||+||++.|+|+ +|||+||+.|++++++|+.+++...+++...
T Consensus 199 ~~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~~~~~e~~~L~s~ 277 (772)
T 4g9i_A 199 YGDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAYVSPEEEEELTSY 277 (772)
T ss_dssp TTHHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSCCCHHHHHHHSST
T ss_pred chHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhccCchhhhhhccC
Confidence 357899999999999999999999999999999999999999999998 7999999999999999999988888888887
Q ss_pred CCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCC-CeeeccCCCCCCCCCCCHHHH-HhhcCCccEEEe
Q psy198 113 LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS-PLALTSANESNEPSTLCINEF-QKLWSQLSVVID 190 (245)
Q Consensus 113 wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~-PL~sTSAN~SG~~~~~~~e~~-~~~~~~vd~ivd 190 (245)
|+.++++..+....+|+.++++.+|||||+|++|+++.|++.+|. ||++||||+||+|++++.+++ +++.+.+|+++|
T Consensus 278 ~~Pivll~~~~~~~l~~~vap~~~~~Gv~lP~~pl~~lL~~~~~~~~lv~tSaN~sg~P~~~~~~~a~~~L~~~~D~~L~ 357 (772)
T 4g9i_A 278 RRPIITLRKKEPFPLPENLAPGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANYPGMPMVKDNERAFEELKDVADYFLL 357 (772)
T ss_dssp TCCEEEEECCSSCCSCTTSCSSCSEEEEECCCSTHHHHHHHSSSSCCCCCEESSCTTSCCBCSHHHHHHHHTTTCSBEEE
T ss_pred CCCCEEEECCCCCCCChhHCCCCCeEEEEecCCHHHHHHHHhcCCCEEEECcCCCCCCCCccCHHHHHHhhcCcccEEEE
Confidence 777888877777789999999999999999999999999999987 479999999999999999997 467789999999
Q ss_pred CCCCCCCCCCCCeEEEEEeCCceEEEecCCC--hHHHHHH----HHhCCccccCCcCC
Q psy198 191 GGIISNPERFGSTIVDLSEENVYSIVRKGVC--YDKILKI----LHKYHLVEKNTFPI 242 (245)
Q Consensus 191 ~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~--~~~~~~~----l~~~~~~~~~~~~~ 242 (245)
+++.. ......+||++. ++...+||++.. |..+.-. +=..|-+++|+|.+
T Consensus 358 h~R~I-~~~~DDSvv~~~-~~~~~~lRr~RG~~P~~~~~~~~~~~la~G~~lknt~~l 413 (772)
T 4g9i_A 358 HNRKI-LNRADDSVIRFV-DGKRAVIRRSRGFVPLPIEIPFEYNGLAVGAELMNAFGV 413 (772)
T ss_dssp ESSCC-CSCCCCCEECCC-SSSCCBSCCCTTSTTCCEECSSCCCEEECCCSSSCCCEE
T ss_pred CCCCc-cCccCCceEEEE-CCeEEEEecCCCCCCCccccCCCCceEEechhHcceEEE
Confidence 98776 368999999998 889999999764 3322111 12567788888853
No 9
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=98.37 E-value=8.4e-07 Score=85.99 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHcCCeEE-EecCcEEE--------EeccCCChHHHHHHH-HHhCCCCCCCcEEEeCCcCccccccccCc
Q psy198 34 PKAALLAAQCLKKGCVVA-LPTDTLYG--------LACDATNSKAINILY-EIKKRDVNKPLAICVSEITDIPKWADTHT 103 (245)
Q Consensus 34 ~~~i~~a~~~L~~GgvVi-~PTdTvYg--------L~a~a~n~~Av~rI~-~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~ 103 (245)
.+..+++++.|.+|+||. +..-.-|| |.|+|.+++..+||+ ++|+|+.-.||+-.+- .|.+.+|.+.+
T Consensus 396 ~~~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~~~- 473 (576)
T 3ven_A 396 ANLEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLEVD- 473 (576)
T ss_dssp TTHHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBSSC-
T ss_pred CcHHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcCCC-
Confidence 345689999999999997 88888888 899999999999999 8999999999998774 36677775431
Q ss_pred hHHHHHHhhCCCCEEE-EecC----CCccccccCCCCCeEE---EEecCcHHHHHHHHHc----CCC-eeeccCCCCCCC
Q psy198 104 VSFELLAELLPGPVTI-VFNR----SEHLNLELNPNVTKVA---VRIPDHKFLRQLLKLM----DSP-LALTSANESNEP 170 (245)
Q Consensus 104 ~~~~l~~~~wPGplTl-Il~~----~~~lp~~l~~~~~tvg---vRip~~~~~~~Li~~~----g~P-L~sTSAN~SG~~ 170 (245)
.|.|+.+ +.+- ++.+|..+. -++|-- |.=-.+|...+||+++ |.| |+.||.|..|+|
T Consensus 474 ---------~~spyMl~~~~v~~~~r~~ipav~H-vDgTaR~QtV~~~~np~~~~ll~~f~~~TG~pvllNTSfN~~GeP 543 (576)
T 3ven_A 474 ---------ADFPYMIMTTKVRAAYAERLPSVVH-EDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEP 543 (576)
T ss_dssp ---------SCCCSSCSCEEBCGGGTTTCTTTSC-TTSEECCEEECTTTCHHHHHHHHHHHHHHSSCEEEEEESSCTTSC
T ss_pred ---------CCCCceeEeeecCHhHHhhCCcEEe-ccCCccceEECCccCHHHHHHHHHHHHHhCCeEEEECCCCCCCCC
Confidence 2455443 3332 245666443 233322 2334688889998854 888 569999999999
Q ss_pred CCCCHHHHHhhc--CCccEEEeCC
Q psy198 171 STLCINEFQKLW--SQLSVVIDGG 192 (245)
Q Consensus 171 ~~~~~e~~~~~~--~~vd~ivd~g 192 (245)
-..+++|+.+.| ..+|+.+-++
T Consensus 544 iV~tp~dA~~~f~~~~lD~Lv~~~ 567 (576)
T 3ven_A 544 IVSSPADALLTFSRLPIDALAVGP 567 (576)
T ss_dssp CCCSHHHHHHHHHHTTCSEEEETT
T ss_pred CCCCHHHHHHHHHhCCCCEEEECC
Confidence 999999976655 5789777544
No 10
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=57.43 E-value=22 Score=28.41 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=52.3
Q ss_pred cchhcccccCchhhhccccC-CCHHHHHHHHHHHH------cCCeEEEecCcEEEEeccCCChHHHHHHHH
Q psy198 12 GLFYHNAIALPSKMCSIVKV-TDPKAALLAAQCLK------KGCVVALPTDTLYGLACDATNSKAINILYE 75 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~a~~~L~------~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~ 75 (245)
-||+-+-|--.++++++++. .+.+.++++.+.|+ +.|+-+.-...+|-+...+.....+++++.
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~ 85 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLA 85 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 47888888888999999873 35566777776664 679999999999999999999989998874
No 11
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=43.12 E-value=19 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=33.0
Q ss_pred cccCchhhhccccCCCHHHHHHHHHHHHcCCeEEEecCcEEEEec
Q psy198 18 AIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLAC 62 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a 62 (245)
.+...+++++.+..+ ...+.+.++.|++-|+|.-+....|.++.
T Consensus 24 ~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~~~~~G~y~lg~ 67 (67)
T 2heo_A 24 GPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVSSPSPKYWSIGG 67 (67)
T ss_dssp SCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEEEEETTEEEECC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEecCCCceEeeCC
Confidence 455667777777774 56788999999988888777667787763
No 12
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=42.30 E-value=43 Score=28.14 Aligned_cols=66 Identities=8% Similarity=-0.064 Sum_probs=52.3
Q ss_pred cchhcccccCchhhhccccCCCHHHHHHHHHHHH------cCCeEEEecCcEEEEeccCCChHHHHHHHHHhC
Q psy198 12 GLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLK------KGCVVALPTDTLYGLACDATNSKAINILYEIKK 78 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~------~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~ 78 (245)
-||+-+-|--.++++++++. +.+.++++.+.|+ +.|+-+.-...+|-+...+.....++|++.-++
T Consensus 23 lLf~a~epvs~~~La~~l~~-~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~~~~ 94 (219)
T 2z99_A 23 LLLVIDTPVTADALAAATEQ-PVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLDGA 94 (219)
T ss_dssp HHHHCSSCBCHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccc
Confidence 46777778778888888875 4455666666663 569999999999999999999999999986543
No 13
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A
Probab=39.36 E-value=8.1 Score=33.97 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=27.5
Q ss_pred CCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCC
Q psy198 132 NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS 171 (245)
Q Consensus 132 ~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~ 171 (245)
++..+++|+|++-..+ .-|.|++.||.++||.-.
T Consensus 116 NG~rGa~GikI~L~~I------~~g~pviitsG~LSGCT~ 149 (295)
T 1hq0_A 116 NSARGANGIKIALEEV------QEGKPVIITSGNLSGCTT 149 (295)
T ss_dssp CBTEEEEEEEEEGGGC------BTTBCEEEECCCBSSCEE
T ss_pred CCCCcceeEEEEHHHc------CCCCeEEEeCCcccCcEE
Confidence 4567899999986653 338899999999999864
No 14
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=32.08 E-value=82 Score=26.61 Aligned_cols=59 Identities=19% Similarity=0.080 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCeEEEecC------cEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCcccccc
Q psy198 36 AALLAAQCLKKGCVVALPTD------TLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99 (245)
Q Consensus 36 ~i~~a~~~L~~GgvVi~PTd------TvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~ 99 (245)
.+++|++.|++|+.|++=.| +-.-++|..-.++.+..+.+- ...++.++=+.+.+.++.
T Consensus 3 ~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~-----~~GliC~~l~~e~~~~L~ 67 (227)
T 1snn_A 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKD-----AGGLICTALHPDICNKLG 67 (227)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----TEEEEEEEECHHHHHHHT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHc-----CCCcEEEEcCHHHHhhCC
Confidence 58999999999999998776 667777777777666655432 334555555555555553
No 15
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=29.19 E-value=1.1e+02 Score=25.50 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCeEEEecC------cEEEEeccCCChHHHHHHH
Q psy198 34 PKAALLAAQCLKKGCVVALPTD------TLYGLACDATNSKAINILY 74 (245)
Q Consensus 34 ~~~i~~a~~~L~~GgvVi~PTd------TvYgL~a~a~n~~Av~rI~ 74 (245)
.+.+++|++.|++|+.|++=.| +-.-+++..-+++.+..+.
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~ 59 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHH
Confidence 4679999999999999998776 4566777767776666553
No 16
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=29.06 E-value=1.1e+02 Score=25.30 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCeEEEecC------cEEEEeccCCChHHHHHHH
Q psy198 36 AALLAAQCLKKGCVVALPTD------TLYGLACDATNSKAINILY 74 (245)
Q Consensus 36 ~i~~a~~~L~~GgvVi~PTd------TvYgL~a~a~n~~Av~rI~ 74 (245)
.+++|++.|++|+.|++=.| +-.-+++..-.++.+..+.
T Consensus 7 ~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~ 51 (204)
T 1tks_A 7 PIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLV 51 (204)
T ss_dssp CHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHH
Confidence 48999999999999998776 5677777777776666554
No 17
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=23.90 E-value=87 Score=28.35 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHcCC--eEEEecCcEEE-------EeccCCChHHHHHHHHHhCCCCCCC
Q psy198 33 DPKAALLAAQCLKKGC--VVALPTDTLYG-------LACDATNSKAINILYEIKKRDVNKP 84 (245)
Q Consensus 33 ~~~~i~~a~~~L~~Gg--vVi~PTdTvYg-------L~a~a~n~~Av~rI~~iK~R~~~Kp 84 (245)
..++++++++.|++|| ++++|.-|-.- +.-.+++..+++-++.+=.+. +.|
T Consensus 208 n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ks-g~P 267 (367)
T 1iuq_A 208 NTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHS-DVP 267 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTS-SSC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHc-CCC
Confidence 4468899999999966 55688876655 445679999998777776665 455
No 18
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=23.68 E-value=1.6e+02 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCeEEEecC------cEEEEeccCCChHHHHHHHH
Q psy198 36 AALLAAQCLKKGCVVALPTD------TLYGLACDATNSKAINILYE 75 (245)
Q Consensus 36 ~i~~a~~~L~~GgvVi~PTd------TvYgL~a~a~n~~Av~rI~~ 75 (245)
.+++|++.|++|+.|++=.| +-.-+++..-+++.+..+.+
T Consensus 6 ~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~ 51 (206)
T 3mio_A 6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVR 51 (206)
T ss_dssp CHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHH
Confidence 48999999999999998765 55667777667766655543
No 19
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=22.20 E-value=1e+02 Score=22.13 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=36.6
Q ss_pred CchhhhccccCCCHHHHHHHHHHHHcCCeEE-Eec-CcEEEEeccCCChHHHHHHHHHh
Q psy198 21 LPSKMCSIVKVTDPKAALLAAQCLKKGCVVA-LPT-DTLYGLACDATNSKAINILYEIK 77 (245)
Q Consensus 21 ~~~~~~~~~~~~~~~~i~~a~~~L~~GgvVi-~PT-dTvYgL~a~a~n~~Av~rI~~iK 77 (245)
...++++.|.. ....+.+|.+.|.+-|+|. .|. -.+|=+ ...+.+.+..+|++.
T Consensus 45 s~~eLa~~lgV-Sr~tVr~al~~L~~~GlI~~~~gG~~G~~V--~~~~~~~~~~~~~~R 100 (102)
T 2b0l_A 45 VASKIADRVGI-TRSVIVNALRKLESAGVIESRSLGMKGTYI--KVLNNKFLIELENLK 100 (102)
T ss_dssp CHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECSSSCEEE--EECCHHHHHHHHHTC
T ss_pred CHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEeCCCCcEEE--ecCCHHHHHHHHHHH
Confidence 34556677776 5668899999999888775 452 233333 235788888888875
No 20
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=21.38 E-value=77 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHcCCeEEEecCcEEEEe
Q psy198 33 DPKAALLAAQCLKKGCVVALPTDTLYGLA 61 (245)
Q Consensus 33 ~~~~i~~a~~~L~~GgvVi~PTdTvYgL~ 61 (245)
+...+.+|...|+..|.|+.|.--.|.++
T Consensus 47 dKKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 47 PKRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred CHHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 55688999999999999999999999997
No 21
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=20.97 E-value=60 Score=25.12 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCC
Q psy198 36 AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKR 79 (245)
Q Consensus 36 ~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R 79 (245)
.-..|.++|+.+|-++ +. +-+||-|.++.+++++-..|-.
T Consensus 71 s~~~A~rAL~~NG~ii---~G-~mIGV~Py~~~~ve~l~~~~~~ 110 (132)
T 3p3d_A 71 NPASAVDALLENGAVF---NG-VLLGVIPYTKDAVERLQKRKLT 110 (132)
T ss_dssp SHHHHHHHHTTTTCEE---TT-EECEEEECCHHHHHHHC-----
T ss_pred CHHHHHHHHHhCCeEe---Cc-EEEEEEECCHHHHHHHhcCCcc
Confidence 3457778888888775 22 4999999999999998776643
No 22
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=20.13 E-value=1.4e+02 Score=21.70 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=23.9
Q ss_pred cccCCCHHHHHHHHHHHHcCCeEEE-ecCcEEE
Q psy198 28 IVKVTDPKAALLAAQCLKKGCVVAL-PTDTLYG 59 (245)
Q Consensus 28 ~~~~~~~~~i~~a~~~L~~GgvVi~-PTdTvYg 59 (245)
++...+.+.++++.+.|++||-++. |+|+-||
T Consensus 83 ~~~v~d~~evd~~~~~l~~Gg~v~~p~~~~~~G 115 (136)
T 1u7i_A 83 FVDCESNAQIERLAEALSDGGKALMPLGDYGFS 115 (136)
T ss_dssp EEECCCHHHHHHHHHHHHTTSEEEEEEECCSSS
T ss_pred EEEcCCHHHHHHHHHHHHcCCEEecccccCCCc
Confidence 5677788889888888888887765 5666554
Done!