Your job contains 1 sequence.
>psy198
MRLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGL
ACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIV
FNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK
LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTF
PIPVL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy198
(245 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-070410-65 - symbol:zgc:162301 "zgc:162301" ... 484 3.8e-46 1
UNIPROTKB|F1NJF5 - symbol:YRDC "Uncharacterized protein" ... 461 1.0e-43 1
FB|FBgn0061361 - symbol:CG33786 species:7227 "Drosophila ... 455 4.5e-43 1
MGI|MGI:2387201 - symbol:Yrdc "yrdC domain containing (E.... 453 7.3e-43 1
UNIPROTKB|Q0VC80 - symbol:YRDC "YrdC domain-containing pr... 452 9.3e-43 1
UNIPROTKB|Q86U90 - symbol:YRDC "YrdC domain-containing pr... 449 1.9e-42 1
RGD|708492 - symbol:Yrdc "yrdC domain containing (E.coli)... 449 1.9e-42 1
UNIPROTKB|E2R8D0 - symbol:YRDC "Uncharacterized protein" ... 436 4.6e-41 1
TAIR|locus:2175173 - symbol:AT5G60590 "AT5G60590" species... 423 1.1e-39 1
UNIPROTKB|Q2GDI6 - symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC f... 255 7.0e-22 1
TIGR_CMR|NSE_0579 - symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC ... 255 7.0e-22 1
UNIPROTKB|Q2GG33 - symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC f... 249 3.0e-21 1
TIGR_CMR|ECH_0802 - symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC ... 249 3.0e-21 1
UNIPROTKB|Q71WN7 - symbol:LMOf2365_2514 "Sua5/YciO/YrdC/Y... 232 1.9e-19 1
UNIPROTKB|Q74CS6 - symbol:yrdC "tRNA (N6-threonylcarbamyl... 232 1.9e-19 1
TIGR_CMR|GSU_1596 - symbol:GSU_1596 "Sua5/YciO/YrdC/YwlC ... 232 1.9e-19 1
UNIPROTKB|Q81JX5 - symbol:BAS5174 "Sua5/yciO/yrdC/ywlC fa... 222 3.0e-18 1
TIGR_CMR|BA_5568 - symbol:BA_5568 "sua5/yciO/yrdC/ywlC fa... 222 3.0e-18 1
UNIPROTKB|Q9KT26 - symbol:VC1079 "Putative uncharacterize... 219 4.6e-18 1
TIGR_CMR|VC_1079 - symbol:VC_1079 "conserved hypothetical... 219 4.6e-18 1
UNIPROTKB|Q3Z887 - symbol:DET0835 "Sua5/YciO/YrdC/YwlC fa... 213 2.0e-17 1
TIGR_CMR|DET_0835 - symbol:DET_0835 "Sua5/YciO/YrdC/YwlC ... 213 2.0e-17 1
UNIPROTKB|Q3A930 - symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC f... 212 4.1e-17 1
TIGR_CMR|CHY_2561 - symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC ... 212 4.1e-17 1
UNIPROTKB|Q2GJU2 - symbol:APH_0782 "Sua5/YciO/YrdC/YwlC f... 209 5.3e-17 1
TIGR_CMR|APH_0782 - symbol:APH_0782 "Sua5/YciO/YrdC/YwlC ... 209 5.3e-17 1
CGD|CAL0002177 - symbol:orf19.7088 species:5476 "Candida ... 208 2.0e-16 1
UNIPROTKB|Q9KVT5 - symbol:rimN "tRNA threonylcarbamoylade... 197 9.8e-16 1
TIGR_CMR|VC_0054 - symbol:VC_0054 "Sua5/YciO/YrdC family ... 197 9.8e-16 1
UNIPROTKB|Q8EKQ3 - symbol:rimN "tRNA threonylcarbamoylade... 193 2.6e-15 1
TIGR_CMR|SO_0037 - symbol:SO_0037 "Sua5/YciO/YrdC/YwlC fa... 193 2.6e-15 1
UNIPROTKB|Q5LX83 - symbol:SPO0297 "Sua5/YciO/YrdC family ... 188 1.6e-14 1
TIGR_CMR|SPO_0297 - symbol:SPO_0297 "Sua5/YciO/YrdC famil... 188 1.6e-14 1
ASPGD|ASPL0000000720 - symbol:AN10771 species:162425 "Eme... 138 1.4e-13 2
UNIPROTKB|Q10618 - symbol:MT1340 "Uncharacterized protein... 174 2.7e-13 1
UNIPROTKB|Q8ECV7 - symbol:yciO "RNA binding protein YciO"... 172 4.4e-13 1
UNIPROTKB|Q9KSS8 - symbol:VC_1178 "Putative uncharacteriz... 172 4.4e-13 1
TIGR_CMR|SO_3016 - symbol:SO_3016 "Sua5/YciO/YrdC/YwlC fa... 172 4.4e-13 1
TIGR_CMR|VC_1178 - symbol:VC_1178 "conserved hypothetical... 172 4.4e-13 1
POMBASE|SPCC895.03c - symbol:SPCC895.03c "SUA5/yciO/yrdC ... 133 1.4e-12 2
UNIPROTKB|Q47YC6 - symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC f... 166 1.9e-12 1
TIGR_CMR|CPS_3520 - symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC ... 166 1.9e-12 1
UNIPROTKB|Q885M0 - symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC... 165 2.4e-12 1
UNIPROTKB|P45748 - symbol:tsaC "protein involved in synth... 164 3.1e-12 1
UNIPROTKB|Q83D35 - symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC f... 159 1.0e-11 1
TIGR_CMR|CBU_0909 - symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC ... 159 1.0e-11 1
UNIPROTKB|Q83AA2 - symbol:rimN "tRNA threonylcarbamoylade... 157 1.7e-11 1
TIGR_CMR|CBU_2003 - symbol:CBU_2003 "Sua5/YciO/YrdC/YwlC ... 157 1.7e-11 1
DICTYBASE|DDB_G0278955 - symbol:DDB_G0278955 "YrdC domain... 165 1.8e-11 2
UNIPROTKB|Q88B46 - symbol:rimN "tRNA threonylcarbamoylade... 152 5.8e-11 1
UNIPROTKB|Q605R9 - symbol:MCA2209 "Sua5/YciO/YrdC/YwlC fa... 150 2.5e-10 1
UNIPROTKB|Q0C144 - symbol:HNE_1848 "Sua5/YciO/YrdC/YwlC f... 161 2.5e-10 1
ZFIN|ZDB-GENE-030131-7332 - symbol:wu:fj08f03 "wu:fj08f03... 159 3.3e-09 1
GENEDB_PFALCIPARUM|PFL0175c - symbol:PFL0175c "hypothetic... 157 3.5e-09 1
UNIPROTKB|Q8I610 - symbol:PFL0175c "Conserved Plasmodium ... 157 3.5e-09 1
UNIPROTKB|Q48AU1 - symbol:rimN "tRNA threonylcarbamoylade... 135 5.5e-09 1
TIGR_CMR|CPS_0027 - symbol:CPS_0027 "putative RNA-binding... 135 5.5e-09 1
UNIPROTKB|F1NT09 - symbol:LOC428714 "Uncharacterized prot... 155 1.1e-08 1
TIGR_CMR|SO_2094 - symbol:SO_2094 "hydrogenase maturation... 153 2.1e-08 1
UNIPROTKB|G4MQP5 - symbol:MGG_16276 "Uncharacterized prot... 101 3.9e-08 2
SGD|S000003137 - symbol:SUA5 "Single-stranded telomeric D... 145 7.9e-08 1
TAIR|locus:2078668 - symbol:AT3G01920 species:3702 "Arabi... 134 8.9e-07 1
UNIPROTKB|Q603G8 - symbol:rimN "tRNA threonylcarbamoylade... 125 1.3e-06 1
UNIPROTKB|P30131 - symbol:hypF "hydrogenase maturation pr... 126 3.5e-05 1
UNIPROTKB|Q8X849 - symbol:hypF "Transcriptional regulator... 124 6.0e-05 1
>ZFIN|ZDB-GENE-070410-65 [details] [associations]
symbol:zgc:162301 "zgc:162301" species:7955 "Danio
rerio" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 ZFIN:ZDB-GENE-070410-65
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 EMBL:CU855952
IPI:IPI00632527 Ensembl:ENSDART00000060729 Bgee:F1R994
Uniprot:F1R994
Length = 263
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 102/191 (53%), Positives = 133/191 (69%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VVA+PTDT+YGLAC A NS+AI +Y+IK R+ +KPLAICV EI DI K+ +V
Sbjct: 69 GQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCKV-SVKD 127
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
LL +LLPGPVT+V RS LN +LNP + VRIPDH F+R+L ++ D+PLALTSAN
Sbjct: 128 RLLRDLLPGPVTLVLERSATLNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTPLALTSANV 187
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL 226
S + ST+ NEF+ LW +L+VV+DGG I + R GST+VDLS Y I+R G +
Sbjct: 188 STQSSTVAANEFEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIRPGCALSATV 247
Query: 227 KILH-KYHLVE 236
+IL +Y L+E
Sbjct: 248 QILEGRYGLLE 258
>UNIPROTKB|F1NJF5 [details] [associations]
symbol:YRDC "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 GO:GO:0051051 TIGRFAMs:TIGR00057
GeneTree:ENSGT00390000015364 OMA:MSPARPC EMBL:AADN02043911
IPI:IPI00573762 Ensembl:ENSGALT00000002509 Uniprot:F1NJF5
Length = 259
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 97/198 (48%), Positives = 137/198 (69%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA+PTDT+YG+AC A +S+A+ +Y +K R+ KPLAIC+ ++ I ++ + V
Sbjct: 63 GGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEHIYRYCHVN-VPD 121
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
ELL +LLPGPVT+V RSE LN +LNP + V VRIP+H F+R+L + PLALTSAN
Sbjct: 122 ELLQDLLPGPVTLVLKRSEELNKDLNPFTSLVGVRIPNHPFIRELARACPGPLALTSANV 181
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
S++ STL ++EFQ LW QLS+V+DGG I + PE R GST+VDLS ++I+R G
Sbjct: 182 SSQASTLTVSEFQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLSVSGKFTIIRPGCAL 241
Query: 223 DKILKILH-KYHLVEKNT 239
++IL KY LV +++
Sbjct: 242 TSTVEILRQKYGLVPESS 259
>FB|FBgn0061361 [details] [associations]
symbol:CG33786 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=ISS] [GO:0045182 "translation
regulator activity" evidence=ISS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE013599 GO:GO:0003899 GO:GO:0032774
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
OMA:MSPARPC UniGene:Dm.1509 EMBL:AY071501 RefSeq:NP_001027444.1
HSSP:O27727 SMR:Q8SYJ9 STRING:Q8SYJ9 EnsemblMetazoa:FBtr0091787
GeneID:3772640 KEGG:dme:Dmel_CG33786 UCSC:CG33786-RA
FlyBase:FBgn0061361 InParanoid:Q8SYJ9 GenomeRNAi:3772640
NextBio:854475 Uniprot:Q8SYJ9
Length = 248
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 104/238 (43%), Positives = 137/238 (57%)
Query: 3 LRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPXXXXXXXXXXXXGCVVALPTDTLYGLAC 62
LR H T H A L + +C+ V D G V+ALPTDT+YGLAC
Sbjct: 12 LRAHH--TSSRMQHQASELRTPVCA---VGDEAALQLARQCLLGGQVIALPTDTVYGLAC 66
Query: 63 DATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN 122
DA N AI LYEIK RD +KP+AICV I + ++ +S ELL LLPGP+TIV
Sbjct: 67 DANNETAIQQLYEIKGRDEHKPVAICVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIE 126
Query: 123 RSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKL-MDSPLALTSANESNEPSTLCINEFQK 180
R+ L N LNP+ +K+ +RIPD F+R L + + PLALTSAN S+ PS+L ++EF+
Sbjct: 127 RTSQLSNRFLNPSTSKIGIRIPDFNFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRS 186
Query: 181 LWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
LW QL V D G I E R ST++DL+ Y IVR GV L ++ ++ + E
Sbjct: 187 LWPQLGAVFDAGRIGLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRE 244
>MGI|MGI:2387201 [details] [associations]
symbol:Yrdc "yrdC domain containing (E.coli)" species:10090
"Mus musculus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0016020 "membrane"
evidence=IDA] [GO:0051051 "negative regulation of transport"
evidence=ISA] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
MGI:MGI:2387201 GO:GO:0005739 GO:GO:0016020 EMBL:AL606933
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
EMBL:AK153627 EMBL:AY283537 EMBL:BC023823 IPI:IPI00229852
RefSeq:NP_705794.2 UniGene:Mm.258568 ProteinModelPortal:Q3U5F4
SMR:Q3U5F4 STRING:Q3U5F4 PhosphoSite:Q3U5F4 PaxDb:Q3U5F4
PRIDE:Q3U5F4 Ensembl:ENSMUST00000102628 GeneID:230734
KEGG:mmu:230734 UCSC:uc008urf.2 InParanoid:Q3U5F4 ChiTaRS:YRDC
NextBio:380087 Bgee:Q3U5F4 Genevestigator:Q3U5F4 Uniprot:Q3U5F4
Length = 280
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 95/194 (48%), Positives = 126/194 (64%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VVA+PTDTLYGLAC A++S A++ +Y +K R KPLA+C+ + D+ ++ V
Sbjct: 81 GAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR-VPR 139
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTSAN
Sbjct: 140 ELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTSANL 199
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 200 SSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPGCAL 259
Query: 223 DKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 260 ENTTSILQQKYGLL 273
>UNIPROTKB|Q0VC80 [details] [associations]
symbol:YRDC "YrdC domain-containing protein, mitochondrial"
species:9913 "Bos taurus" [GO:0016020 "membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005739 GO:GO:0016020 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051 eggNOG:COG0009
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 EMBL:BC120307
IPI:IPI00687357 RefSeq:NP_001069018.1 UniGene:Bt.61252
ProteinModelPortal:Q0VC80 STRING:Q0VC80 PRIDE:Q0VC80
Ensembl:ENSBTAT00000008529 GeneID:512062 KEGG:bta:512062 CTD:79693
HOGENOM:HOG000239829 HOVERGEN:HBG055700 InParanoid:Q0VC80
OMA:MSPARPC OrthoDB:EOG4KD6N1 NextBio:20870233 Uniprot:Q0VC80
Length = 276
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 93/193 (48%), Positives = 126/193 (65%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VVA+PTDTLYGLAC A+ S+A+ +Y +K R KPLA+C+ + D+ ++ V
Sbjct: 78 GAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYCHVR-VPE 136
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ PLALTSAN
Sbjct: 137 GLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTSANL 196
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
S++ S+L + EFQ LW LS++IDGG I + PE R GST+VDLS + I+R G
Sbjct: 197 SSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCAL 256
Query: 223 DKILKILHKYHLV 235
+ IL +Y L+
Sbjct: 257 ESTSAILQEYGLL 269
>UNIPROTKB|Q86U90 [details] [associations]
symbol:YRDC "YrdC domain-containing protein, mitochondrial"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IDA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005739 GO:GO:0016020
EMBL:CH471059 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
EMBL:AL929472 GO:GO:0051051 eggNOG:COG0009 TIGRFAMs:TIGR00057
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
OrthoDB:EOG4KD6N1 EMBL:AY172561 EMBL:BC008984 EMBL:BC067857
EMBL:BC068057 EMBL:BC080186 EMBL:AY286019 EMBL:AY286020
EMBL:AF250397 EMBL:AK027129 IPI:IPI00384180 RefSeq:NP_078916.3
UniGene:Hs.301564 ProteinModelPortal:Q86U90 SMR:Q86U90
STRING:Q86U90 PhosphoSite:Q86U90 DMDM:74750410 PaxDb:Q86U90
PRIDE:Q86U90 Ensembl:ENST00000373044 GeneID:79693 KEGG:hsa:79693
UCSC:uc001cca.1 GeneCards:GC01M038268 H-InvDB:HIX0023600
HGNC:HGNC:28905 HPA:HPA030147 MIM:612276 neXtProt:NX_Q86U90
PharmGKB:PA142670553 InParanoid:Q86U90 GenomeRNAi:79693
NextBio:68972 Bgee:Q86U90 CleanEx:HS_YRDC Genevestigator:Q86U90
Uniprot:Q86U90
Length = 279
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 96/194 (49%), Positives = 127/194 (65%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VVA+PTDTLYGLAC A+ S A+ +Y +K R KPLA+C+ + D+ ++ V
Sbjct: 80 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR-VPE 138
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
LL +LLPGPVT+V RSE LN +LNP V +RIPDH F++ L ++ + PLALTSAN
Sbjct: 139 GLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANL 198
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 199 SSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCAL 258
Query: 223 DKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 259 ESTTAILQQKYGLL 272
>RGD|708492 [details] [associations]
symbol:Yrdc "yrdC domain containing (E.coli)" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016020
"membrane" evidence=IEA;ISO] [GO:0051051 "negative regulation of
transport" evidence=IEA;ISO] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 RGD:708492 GO:GO:0005739 GO:GO:0016020
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
OrthoDB:EOG4KD6N1 EMBL:BC088428 EMBL:BC099797 IPI:IPI00654465
RefSeq:NP_783194.2 UniGene:Rn.9475 ProteinModelPortal:Q499R4
STRING:Q499R4 PhosphoSite:Q499R4 Ensembl:ENSRNOT00000039870
GeneID:319113 KEGG:rno:319113 UCSC:RGD:708492 InParanoid:Q5I0E4
NextBio:672105 Genevestigator:Q499R4 Uniprot:Q499R4
Length = 280
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 95/194 (48%), Positives = 125/194 (64%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VVA+PTDTLYGLAC A+ S A++ +Y +K R KPLA+C+ + D+ ++ V
Sbjct: 81 GAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR-VPR 139
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
ELL +L PGPVT+V RSE LN +LNP V +RIPDH F+ L ++ PLALTSAN
Sbjct: 140 ELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTSANL 199
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
S++ S+L + EFQ LW LS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 200 SSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSGCAL 259
Query: 223 DKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 260 ENTTAILQGKYGLL 273
>UNIPROTKB|E2R8D0 [details] [associations]
symbol:YRDC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 OMA:MSPARPC
EMBL:AAEX03009595 RefSeq:XP_003639549.1 Ensembl:ENSCAFT00000005221
GeneID:100855794 KEGG:cfa:100855794 Uniprot:E2R8D0
Length = 274
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 94/194 (48%), Positives = 126/194 (64%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VV +PTDTLYG AC A+ S A++ +Y +K R KPLA+C+ + D+ ++ +V
Sbjct: 73 GAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVADVYRYCRV-SVPE 131
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
LL +LLPGPVT+V RS+ LN +LNP V VRIPDH F++ L ++ PLALTSAN
Sbjct: 132 GLLRDLLPGPVTLVLERSQELNRDLNPCTPLVGVRIPDHAFIQDLAQVFGEPLALTSANL 191
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
S++ S+L + EFQ LW QLS+VIDGG I + PE R GST+VDLS + I+R G
Sbjct: 192 SSQASSLTVEEFQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPGCAL 251
Query: 223 DKILKILH-KYHLV 235
+ IL KY L+
Sbjct: 252 ESTTAILRQKYGLL 265
>TAIR|locus:2175173 [details] [associations]
symbol:AT5G60590 "AT5G60590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP002688 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00057 OMA:MSPARPC IPI:IPI00517786
RefSeq:NP_974970.1 UniGene:At.19096 ProteinModelPortal:F4K0E6
SMR:F4K0E6 PRIDE:F4K0E6 EnsemblPlants:AT5G60590.2 GeneID:836180
KEGG:ath:AT5G60590 Uniprot:F4K0E6
Length = 288
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 92/217 (42%), Positives = 130/217 (59%)
Query: 23 SKMCSIVKVTDPXXXXXXXXXXXXGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
SK C + T+ V+A+PTDTLYG ACDA + +A++ +YEIK R +
Sbjct: 63 SKSCLVHPATEAYAQEAIEAIKSEK-VIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLT 121
Query: 83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAV 140
PLAICV ++ DI + A T + LL LLPGPVT+V R E LE LNP + + V
Sbjct: 122 SPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGV 181
Query: 141 RIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF 200
R+PD +F+R++ + S LALTSAN S + S++C+ +F+ LW + V DGG++ + R
Sbjct: 182 RVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSG-RA 240
Query: 201 GSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEK 237
GSTIVDL++ Y I+R G + IL KY L E+
Sbjct: 241 GSTIVDLTKVGKYKIIRPGSAKQATVAILEKYLLEEE 277
>UNIPROTKB|Q2GDI6 [details] [associations]
symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_506460.1
ProteinModelPortal:Q2GDI6 STRING:Q2GDI6 GeneID:3931732
KEGG:nse:NSE_0579 PATRIC:22681197 OMA:YDIKQRN
ProtClustDB:CLSK2527989 BioCyc:NSEN222891:GHFU-596-MONOMER
Uniprot:Q2GDI6
Length = 195
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 64/176 (36%), Positives = 99/176 (56%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VV PT+T+Y LACDA+N +A+ +Y+IK+R+ K L I V+ I+D+ +A +
Sbjct: 12 GGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNESQA 71
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELN-PNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
L+ E PGPVT + R + +L P KVAVR+PD K ++L+ P+ TS N
Sbjct: 72 RLIQECCPGPVTFILKRKKSAHLRFRFPE--KVAVRVPDSKVALKILRGFKRPVFATSVN 129
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
S P+ ++ F ++ S + + I N E G S+I+D+S + +VRKG
Sbjct: 130 LSGRPA---VSNFTQIGSYIKKRVSRIICDNREVKGTASSIIDISGKRAV-LVRKG 181
>TIGR_CMR|NSE_0579 [details] [associations]
symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_506460.1
ProteinModelPortal:Q2GDI6 STRING:Q2GDI6 GeneID:3931732
KEGG:nse:NSE_0579 PATRIC:22681197 OMA:YDIKQRN
ProtClustDB:CLSK2527989 BioCyc:NSEN222891:GHFU-596-MONOMER
Uniprot:Q2GDI6
Length = 195
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 64/176 (36%), Positives = 99/176 (56%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VV PT+T+Y LACDA+N +A+ +Y+IK+R+ K L I V+ I+D+ +A +
Sbjct: 12 GGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNESQA 71
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELN-PNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
L+ E PGPVT + R + +L P KVAVR+PD K ++L+ P+ TS N
Sbjct: 72 RLIQECCPGPVTFILKRKKSAHLRFRFPE--KVAVRVPDSKVALKILRGFKRPVFATSVN 129
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
S P+ ++ F ++ S + + I N E G S+I+D+S + +VRKG
Sbjct: 130 LSGRPA---VSNFTQIGSYIKKRVSRIICDNREVKGTASSIIDISGKRAV-LVRKG 181
>UNIPROTKB|Q2GG33 [details] [associations]
symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000236 GenomeReviews:CP000236_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_507600.1
ProteinModelPortal:Q2GG33 STRING:Q2GG33 GeneID:3926999
KEGG:ech:ECH_0802 PATRIC:20577032 OMA:EDICVIP
ProtClustDB:CLSK749649 BioCyc:ECHA205920:GJNR-805-MONOMER
Uniprot:Q2GG33
Length = 194
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 62/185 (33%), Positives = 103/185 (55%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFEL 108
++ PT+T+Y LA A + +A+ +Y+IK R NKPL++ +S I I +++ +F++
Sbjct: 14 LILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIKQFSTLTEHTFKI 73
Query: 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESN 168
+ +L PGPVT V + L + +RIPDH ++L D+P+ TS N S
Sbjct: 74 IQKLSPGPVTFVLPIHNYNKLPRQFFNDTIGIRIPDHPIALEILSNFDNPVVGTSVNISG 133
Query: 169 EPSTLCINEFQKLWSQ-LSVVI-DGGIISNPERFGSTIVDLSEENVYSIVRKG-VCYDKI 225
+PS ++ Q+ Q +SV+I D +++ E ST++DL+ Y I+R G V KI
Sbjct: 134 QPSVTASHQVQETIKQHISVIIEDDSLVNGIE---STVIDLTS---YKILRTGAVSEKKI 187
Query: 226 LKILH 230
I+H
Sbjct: 188 QDIIH 192
>TIGR_CMR|ECH_0802 [details] [associations]
symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000236 GenomeReviews:CP000236_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_507600.1
ProteinModelPortal:Q2GG33 STRING:Q2GG33 GeneID:3926999
KEGG:ech:ECH_0802 PATRIC:20577032 OMA:EDICVIP
ProtClustDB:CLSK749649 BioCyc:ECHA205920:GJNR-805-MONOMER
Uniprot:Q2GG33
Length = 194
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 62/185 (33%), Positives = 103/185 (55%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFEL 108
++ PT+T+Y LA A + +A+ +Y+IK R NKPL++ +S I I +++ +F++
Sbjct: 14 LILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIKQFSTLTEHTFKI 73
Query: 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESN 168
+ +L PGPVT V + L + +RIPDH ++L D+P+ TS N S
Sbjct: 74 IQKLSPGPVTFVLPIHNYNKLPRQFFNDTIGIRIPDHPIALEILSNFDNPVVGTSVNISG 133
Query: 169 EPSTLCINEFQKLWSQ-LSVVI-DGGIISNPERFGSTIVDLSEENVYSIVRKG-VCYDKI 225
+PS ++ Q+ Q +SV+I D +++ E ST++DL+ Y I+R G V KI
Sbjct: 134 QPSVTASHQVQETIKQHISVIIEDDSLVNGIE---STVIDLTS---YKILRTGAVSEKKI 187
Query: 226 LKILH 230
I+H
Sbjct: 188 QDIIH 192
>UNIPROTKB|Q71WN7 [details] [associations]
symbol:LMOf2365_2514 "Sua5/YciO/YrdC/YwlC family protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE017262 GenomeReviews:AE017262_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 OMA:LICHMAD RefSeq:YP_015102.1
ProteinModelPortal:Q71WN7 STRING:Q71WN7 GeneID:2799707
KEGG:lmf:LMOf2365_2514 PATRIC:20326399 ProtClustDB:CLSK564996
Uniprot:Q71WN7
Length = 345
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 59/197 (29%), Positives = 107/197 (54%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTV-S 105
G VA PT+T+YGL DATN A+ +YE K R + PL + ++ + + ++ V +
Sbjct: 28 GECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDPFVASYPVKA 87
Query: 106 FELLAELLPGPVTIVFN-RSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L+ + PGP+T++ + + L ++ ++ V VR+P+H L+ + P+A SA
Sbjct: 88 IQLMEKFWPGPLTVILPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIDAANIPVAAPSA 147
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG-VCY 222
N S +PS T + + L +++ +IDGG + ST++D S + + I+R G V
Sbjct: 148 NRSGKPSPTTASHVIEDLDGKIAGIIDGG--ATGVGLESTVIDCSLD-IPVILRPGGVTK 204
Query: 223 DKILKILHKYHLVEKNT 239
++I +I+ + NT
Sbjct: 205 EQIEQIIGPVDIATNNT 221
>UNIPROTKB|Q74CS6 [details] [associations]
symbol:yrdC "tRNA (N6-threonylcarbamyl-A37) modification
ATPase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:NP_952647.1
ProteinModelPortal:Q74CS6 GeneID:2687124 KEGG:gsu:GSU1596
PATRIC:22026037 ProtClustDB:CLSK924523
BioCyc:GSUL243231:GH27-1540-MONOMER Uniprot:Q74CS6
Length = 203
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 55/175 (31%), Positives = 95/175 (54%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PTDT YG+ C + K I +Y +K+R+ KP + SE++++ ++A ++
Sbjct: 25 GGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKVSNYAY 84
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
++L LPGP T V + + + L V +RIPD++ L+K + P+ TSAN
Sbjct: 85 KILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPIVTTSANL 144
Query: 167 SNE-PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGV 220
S E P + + L QL +V+DGG ++ S++V L + ++R+G+
Sbjct: 145 SGEEPIGDPLEVERTLGKQLDLVVDGGNLTADV---SSVVSLIGDYP-QVLRRGI 195
>TIGR_CMR|GSU_1596 [details] [associations]
symbol:GSU_1596 "Sua5/YciO/YrdC/YwlC family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:NP_952647.1
ProteinModelPortal:Q74CS6 GeneID:2687124 KEGG:gsu:GSU1596
PATRIC:22026037 ProtClustDB:CLSK924523
BioCyc:GSUL243231:GH27-1540-MONOMER Uniprot:Q74CS6
Length = 203
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 55/175 (31%), Positives = 95/175 (54%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PTDT YG+ C + K I +Y +K+R+ KP + SE++++ ++A ++
Sbjct: 25 GGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKVSNYAY 84
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
++L LPGP T V + + + L V +RIPD++ L+K + P+ TSAN
Sbjct: 85 KILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPIVTTSANL 144
Query: 167 SNE-PSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGV 220
S E P + + L QL +V+DGG ++ S++V L + ++R+G+
Sbjct: 145 SGEEPIGDPLEVERTLGKQLDLVVDGGNLTADV---SSVVSLIGDYP-QVLRRGI 195
>UNIPROTKB|Q81JX5 [details] [associations]
symbol:BAS5174 "Sua5/yciO/yrdC/ywlC family protein"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:ANTSTKP RefSeq:NP_847725.1 RefSeq:YP_022236.2
RefSeq:YP_031413.1 ProteinModelPortal:Q81JX5 DNASU:1085255
EnsemblBacteria:EBBACT00000012764 EnsemblBacteria:EBBACT00000015440
EnsemblBacteria:EBBACT00000024112 GeneID:1085255 GeneID:2816855
GeneID:2852074 KEGG:ban:BA_5568 KEGG:bar:GBAA_5568 KEGG:bat:BAS5174
ProtClustDB:CLSK917674 BioCyc:BANT260799:GJAJ-5249-MONOMER
BioCyc:BANT261594:GJ7F-5428-MONOMER Uniprot:Q81JX5
Length = 346
Score = 222 (83.2 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 56/174 (32%), Positives = 98/174 (56%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIPKWADTHTVSF 106
+A PT+T+YGL +A N +AI ++E K R + PL + + S++ I K + V+
Sbjct: 34 IAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVK--EIPPVAE 91
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
+L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ + P+A SAN
Sbjct: 92 KLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANR 151
Query: 167 SNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
S PS TL + ++ L +++ ++DGG + ST++D + V +I+R G
Sbjct: 152 SGRPSPTLASHVYEDLNEKIAGIVDGG--ATGVGVESTVIDCTSA-VPTILRPG 202
>TIGR_CMR|BA_5568 [details] [associations]
symbol:BA_5568 "sua5/yciO/yrdC/ywlC family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:ANTSTKP RefSeq:NP_847725.1 RefSeq:YP_022236.2
RefSeq:YP_031413.1 ProteinModelPortal:Q81JX5 DNASU:1085255
EnsemblBacteria:EBBACT00000012764 EnsemblBacteria:EBBACT00000015440
EnsemblBacteria:EBBACT00000024112 GeneID:1085255 GeneID:2816855
GeneID:2852074 KEGG:ban:BA_5568 KEGG:bar:GBAA_5568 KEGG:bat:BAS5174
ProtClustDB:CLSK917674 BioCyc:BANT260799:GJAJ-5249-MONOMER
BioCyc:BANT261594:GJ7F-5428-MONOMER Uniprot:Q81JX5
Length = 346
Score = 222 (83.2 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 56/174 (32%), Positives = 98/174 (56%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV---SEITDIPKWADTHTVSF 106
+A PT+T+YGL +A N +AI ++E K R + PL + + S++ I K + V+
Sbjct: 34 IAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVK--EIPPVAE 91
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
+L+ PGP+TI+ R E ++ ++ + V VR+PDH L++ + P+A SAN
Sbjct: 92 KLMEHFWPGPLTIILPRKEGISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANR 151
Query: 167 SNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
S PS TL + ++ L +++ ++DGG + ST++D + V +I+R G
Sbjct: 152 SGRPSPTLASHVYEDLNEKIAGIVDGG--ATGVGVESTVIDCTSA-VPTILRPG 202
>UNIPROTKB|Q9KT26 [details] [associations]
symbol:VC1079 "Putative uncharacterized protein VC1079"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
GenomeReviews:AE003852_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:GQLASHY EMBL:AE004189 PIR:G82243 RefSeq:NP_230724.1
ProteinModelPortal:Q9KT26 DNASU:2614349 GeneID:2614349
KEGG:vch:VC1079 PATRIC:20081254 ProtClustDB:CLSK793940
Uniprot:Q9KT26
Length = 329
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 53/175 (30%), Positives = 93/175 (53%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVS 105
G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA D +
Sbjct: 32 GQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWATDIAPEA 91
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
++L PGP+T++ +++ ++ + + V +R+P H L +LK +A SAN
Sbjct: 92 YQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLAVAAPSAN 151
Query: 166 ESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
+ S + L +L+ V+DGG + STIVDL+ + + ++R G
Sbjct: 152 PYKKLSPTSAQQVLDGLNGRLAAVLDGGECQHG--LESTIVDLTSKP-FRVLRAG 203
>TIGR_CMR|VC_1079 [details] [associations]
symbol:VC_1079 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 GenomeReviews:AE003852_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727 OMA:GQLASHY
EMBL:AE004189 PIR:G82243 RefSeq:NP_230724.1
ProteinModelPortal:Q9KT26 DNASU:2614349 GeneID:2614349
KEGG:vch:VC1079 PATRIC:20081254 ProtClustDB:CLSK793940
Uniprot:Q9KT26
Length = 329
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 53/175 (30%), Positives = 93/175 (53%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVS 105
G +VA+PT+T+YGLA DAT +A+ ++ K R N PL + + + +WA D +
Sbjct: 32 GQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWATDIAPEA 91
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
++L PGP+T++ +++ ++ + + V +R+P H L +LK +A SAN
Sbjct: 92 YQLAEAFWPGPLTLLLPKAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHRLAVAAPSAN 151
Query: 166 ESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
+ S + L +L+ V+DGG + STIVDL+ + + ++R G
Sbjct: 152 PYKKLSPTSAQQVLDGLNGRLAAVLDGGECQHG--LESTIVDLTSKP-FRVLRAG 203
>UNIPROTKB|Q3Z887 [details] [associations]
symbol:DET0835 "Sua5/YciO/YrdC/YwlC family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_181562.1
ProteinModelPortal:Q3Z887 STRING:Q3Z887 GeneID:3229877
KEGG:det:DET0835 PATRIC:21608729 OMA:NETVAIR ProtClustDB:CLSK935606
BioCyc:DETH243164:GJNF-836-MONOMER Uniprot:Q3Z887
Length = 213
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 56/175 (32%), Positives = 100/175 (57%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT-VS 105
G VV PTDT+Y + A+N++A+ +++IK R K L + +I+ I + A ++
Sbjct: 24 GGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDISQINQVAKVFPPLA 83
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+L E PG +T+V +++++ LEL VA+RIP+ + ++LK + P+ TSAN
Sbjct: 84 SKLAKEYWPGGLTLVLPKTDNIPLELTGGNETVAIRIPNQPAVIEMLKRVGEPVTGTSAN 143
Query: 166 ESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
S S+L E +K L ++ ++DGG +S STI+ ++ + + I+R+G
Sbjct: 144 LSGCKSSLNAAEAEKQLGDRVDFILDGGQVSGGVE--STIIAVNPDGL-KIIRQG 195
>TIGR_CMR|DET_0835 [details] [associations]
symbol:DET_0835 "Sua5/YciO/YrdC/YwlC family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_181562.1
ProteinModelPortal:Q3Z887 STRING:Q3Z887 GeneID:3229877
KEGG:det:DET0835 PATRIC:21608729 OMA:NETVAIR ProtClustDB:CLSK935606
BioCyc:DETH243164:GJNF-836-MONOMER Uniprot:Q3Z887
Length = 213
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 56/175 (32%), Positives = 100/175 (57%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT-VS 105
G VV PTDT+Y + A+N++A+ +++IK R K L + +I+ I + A ++
Sbjct: 24 GGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDISQINQVAKVFPPLA 83
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+L E PG +T+V +++++ LEL VA+RIP+ + ++LK + P+ TSAN
Sbjct: 84 SKLAKEYWPGGLTLVLPKTDNIPLELTGGNETVAIRIPNQPAVIEMLKRVGEPVTGTSAN 143
Query: 166 ESNEPSTLCINEFQK-LWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
S S+L E +K L ++ ++DGG +S STI+ ++ + + I+R+G
Sbjct: 144 LSGCKSSLNAAEAEKQLGDRVDFILDGGQVSGGVE--STIIAVNPDGL-KIIRQG 195
>UNIPROTKB|Q3A930 [details] [associations]
symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:YP_361354.1 ProteinModelPortal:Q3A930
STRING:Q3A930 GeneID:3727660 KEGG:chy:CHY_2561 PATRIC:21278171
OMA:ANTSTKP BioCyc:CHYD246194:GJCN-2560-MONOMER Uniprot:Q3A930
Length = 342
Score = 212 (79.7 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 57/165 (34%), Positives = 86/165 (52%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA PT+T+YGL DA N A+ ++ K R + PL + ++ DI + A V
Sbjct: 28 GELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARHEDIYRVAARVDVRA 87
Query: 107 ELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+ L E PGP+TIV R E L ++ + VAVR+PDH L++ +P+A SAN
Sbjct: 88 QKLMEKFWPGPLTIVLPRREDLPAVVSAGLPTVAVRLPDHPVAVMLIEAAQTPIAAPSAN 147
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
S PS ++ + LS +I + R G ST++DL+
Sbjct: 148 RSGRPSP---TSYEHVLDDLSGIIPVVLAGGNCRVGVESTVLDLT 189
>TIGR_CMR|CHY_2561 [details] [associations]
symbol:CHY_2561 "Sua5/YciO/YrdC/YwlC family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:YP_361354.1 ProteinModelPortal:Q3A930
STRING:Q3A930 GeneID:3727660 KEGG:chy:CHY_2561 PATRIC:21278171
OMA:ANTSTKP BioCyc:CHYD246194:GJCN-2560-MONOMER Uniprot:Q3A930
Length = 342
Score = 212 (79.7 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 57/165 (34%), Positives = 86/165 (52%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA PT+T+YGL DA N A+ ++ K R + PL + ++ DI + A V
Sbjct: 28 GELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARHEDIYRVAARVDVRA 87
Query: 107 ELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+ L E PGP+TIV R E L ++ + VAVR+PDH L++ +P+A SAN
Sbjct: 88 QKLMEKFWPGPLTIVLPRREDLPAVVSAGLPTVAVRLPDHPVAVMLIEAAQTPIAAPSAN 147
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
S PS ++ + LS +I + R G ST++DL+
Sbjct: 148 RSGRPSP---TSYEHVLDDLSGIIPVVLAGGNCRVGVESTVLDLT 189
>UNIPROTKB|Q2GJU2 [details] [associations]
symbol:APH_0782 "Sua5/YciO/YrdC/YwlC family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000235 GenomeReviews:CP000235_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 OMA:EDICVIP
ProtClustDB:CLSK749649 RefSeq:YP_505359.1 ProteinModelPortal:Q2GJU2
STRING:Q2GJU2 GeneID:3930676 KEGG:aph:APH_0782 PATRIC:20950250
BioCyc:APHA212042:GHPM-796-MONOMER Uniprot:Q2GJU2
Length = 200
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 54/185 (29%), Positives = 95/185 (51%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFEL 108
+V PT+TLY LAC+A + +A+ LY+IK+R +KP ++ + +I + K+++ +
Sbjct: 14 IVCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVKKFSNMKNTDLRI 73
Query: 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESN 168
+ L PGP+T + NL + VRIPDH +L + P+ TSAN S
Sbjct: 74 MEMLSPGPITFILPLHYAQNLPRRFFKDTLGVRIPDHALACNILSRFEFPVVATSANLSG 133
Query: 169 EPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC-YDKIL 226
E L ++ ++L +S + + S+ ST+ D+ + I+R G+ KIL
Sbjct: 134 ERDALKASDIPEELRMHVSKLWEDD--SSVSGMCSTVFDMVSQK---ILRTGMLPSSKIL 188
Query: 227 KILHK 231
+++
Sbjct: 189 DAINR 193
>TIGR_CMR|APH_0782 [details] [associations]
symbol:APH_0782 "Sua5/YciO/YrdC/YwlC family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000235 GenomeReviews:CP000235_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 OMA:EDICVIP
ProtClustDB:CLSK749649 RefSeq:YP_505359.1 ProteinModelPortal:Q2GJU2
STRING:Q2GJU2 GeneID:3930676 KEGG:aph:APH_0782 PATRIC:20950250
BioCyc:APHA212042:GHPM-796-MONOMER Uniprot:Q2GJU2
Length = 200
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 54/185 (29%), Positives = 95/185 (51%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFEL 108
+V PT+TLY LAC+A + +A+ LY+IK+R +KP ++ + +I + K+++ +
Sbjct: 14 IVCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVKKFSNMKNTDLRI 73
Query: 109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESN 168
+ L PGP+T + NL + VRIPDH +L + P+ TSAN S
Sbjct: 74 MEMLSPGPITFILPLHYAQNLPRRFFKDTLGVRIPDHALACNILSRFEFPVVATSANLSG 133
Query: 169 EPSTLCINEF-QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC-YDKIL 226
E L ++ ++L +S + + S+ ST+ D+ + I+R G+ KIL
Sbjct: 134 ERDALKASDIPEELRMHVSKLWEDD--SSVSGMCSTVFDMVSQK---ILRTGMLPSSKIL 188
Query: 227 KILHK 231
+++
Sbjct: 189 DAINR 193
>CGD|CAL0002177 [details] [associations]
symbol:orf19.7088 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006450 "regulation of translational fidelity" evidence=IEA]
[GO:0070525 "threonylcarbamoyladenosine metabolic process"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 CGD:CAL0002177
EMBL:AACQ01000024 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:XP_720379.1 RefSeq:XP_888667.1
ProteinModelPortal:Q5AFI0 STRING:Q5AFI0 GeneID:3638042
GeneID:3703980 KEGG:cal:CaO19.7088 KEGG:cal:CaO19_7088
Uniprot:Q5AFI0
Length = 382
Score = 208 (78.3 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 47/163 (28%), Positives = 88/163 (53%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS---F 106
+ PT+T+YGLA A + +++ +Y+ K R + PL + +S I + + + +
Sbjct: 56 IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115
Query: 107 ELLAELLPGPVTIVF--NRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
+L++ PGP+TI+ + ++ + N AVR+P+H R L+ + D+P+A SA
Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175
Query: 165 NESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVD 206
N S PS TL + + L ++ +++DGG + ST++D
Sbjct: 176 NASTRPSPTLAEHVYHDLNGKIPLILDGGACNVGVE--STVID 216
>UNIPROTKB|Q9KVT5 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 EMBL:AF459402
eggNOG:COG0009 KO:K07566 OMA:FGLGCNP TIGRFAMs:TIGR00057 HSSP:P45748
PIR:E82370 RefSeq:NP_229713.1 ProteinModelPortal:Q9KVT5
DNASU:2614432 GeneID:2614432 KEGG:vch:VC0054 PATRIC:20079154
ProtClustDB:CLSK793439 Uniprot:Q9KVT5
Length = 188
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 48/149 (32%), Positives = 78/149 (52%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
GCV+A PT+ ++GL CD N A+ L IK+R V K + + + + + D ++
Sbjct: 17 GCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYVDETQLTA 76
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E L ++L P P+T V S + VAVR+ DH +++L PL TS
Sbjct: 77 EQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFGKPLTSTS 136
Query: 164 ANESNEPSTLCINEFQ-KLWSQLSVVIDG 191
AN S +P+ + E +L +Q++VV++G
Sbjct: 137 ANLSGQPACVTQQEVMVQLGNQIAVVVEG 165
>TIGR_CMR|VC_0054 [details] [associations]
symbol:VC_0054 "Sua5/YciO/YrdC family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 EMBL:AF459402
eggNOG:COG0009 KO:K07566 OMA:FGLGCNP TIGRFAMs:TIGR00057 HSSP:P45748
PIR:E82370 RefSeq:NP_229713.1 ProteinModelPortal:Q9KVT5
DNASU:2614432 GeneID:2614432 KEGG:vch:VC0054 PATRIC:20079154
ProtClustDB:CLSK793439 Uniprot:Q9KVT5
Length = 188
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 48/149 (32%), Positives = 78/149 (52%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
GCV+A PT+ ++GL CD N A+ L IK+R V K + + + + + D ++
Sbjct: 17 GCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYVDETQLTA 76
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E L ++L P P+T V S + VAVR+ DH +++L PL TS
Sbjct: 77 EQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFGKPLTSTS 136
Query: 164 ANESNEPSTLCINEFQ-KLWSQLSVVIDG 191
AN S +P+ + E +L +Q++VV++G
Sbjct: 137 ANLSGQPACVTQQEVMVQLGNQIAVVVEG 165
>UNIPROTKB|Q8EKQ3 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:211586 "Shewanella oneidensis MR-1"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
TIGRFAMs:TIGR00057 HSSP:P45748 RefSeq:NP_715679.1
ProteinModelPortal:Q8EKQ3 SMR:Q8EKQ3 GeneID:1167935
KEGG:son:SO_0037 PATRIC:23519765 ProtClustDB:CLSK905558
Uniprot:Q8EKQ3
Length = 188
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 51/164 (31%), Positives = 81/164 (49%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS- 105
G V+A PT+ +YGL CD N AI L +K+R K L + SE + + + D ++
Sbjct: 16 GGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDESQLTD 75
Query: 106 --FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
EL PGP T V H++ L +AVR+ H+ +R L + + PL TS
Sbjct: 76 EQLELAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKPLVSTS 135
Query: 164 ANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVD 206
AN + E L +E ++ ++ ++ G + +R STI+D
Sbjct: 136 ANLAGEDPALSGDEILNVFEGKIDALVLGQL--GEQRQPSTIID 177
>TIGR_CMR|SO_0037 [details] [associations]
symbol:SO_0037 "Sua5/YciO/YrdC/YwlC family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
TIGRFAMs:TIGR00057 HSSP:P45748 RefSeq:NP_715679.1
ProteinModelPortal:Q8EKQ3 SMR:Q8EKQ3 GeneID:1167935
KEGG:son:SO_0037 PATRIC:23519765 ProtClustDB:CLSK905558
Uniprot:Q8EKQ3
Length = 188
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 51/164 (31%), Positives = 81/164 (49%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVS- 105
G V+A PT+ +YGL CD N AI L +K+R K L + SE + + + D ++
Sbjct: 16 GGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDESQLTD 75
Query: 106 --FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
EL PGP T V H++ L +AVR+ H+ +R L + + PL TS
Sbjct: 76 EQLELAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKPLVSTS 135
Query: 164 ANESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVD 206
AN + E L +E ++ ++ ++ G + +R STI+D
Sbjct: 136 ANLAGEDPALSGDEILNVFEGKIDALVLGQL--GEQRQPSTIID 177
>UNIPROTKB|Q5LX83 [details] [associations]
symbol:SPO0297 "Sua5/YciO/YrdC family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HOGENOM:HOG000076160 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 RefSeq:YP_165560.1
ProteinModelPortal:Q5LX83 GeneID:3193859 KEGG:sil:SPO0297
PATRIC:23373847 OMA:LICHMAD ProtClustDB:CLSK835631 Uniprot:Q5LX83
Length = 316
Score = 188 (71.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 61/181 (33%), Positives = 83/181 (45%)
Query: 33 DPXXXXXXXXXXXXGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP G +VA PT+T+YGL DATN +A+ +Y K R PL V+
Sbjct: 12 DPDGIARAAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASA 71
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLEL-NPNVTKVAVRIPDHKFLRQ 150
+ + L PGP+T+V R+ H EL + +AVR+P H R
Sbjct: 72 EAARRHVHWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTART 131
Query: 151 LLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDL 207
LL +D P+A SAN S S T + L +++ V+D G P G STIV L
Sbjct: 132 LLATLDRPVAAPSANPSGRISPTTADHVLAGLDGRIAAVLDAG----PCGVGVESTIVGL 187
Query: 208 S 208
S
Sbjct: 188 S 188
>TIGR_CMR|SPO_0297 [details] [associations]
symbol:SPO_0297 "Sua5/YciO/YrdC family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HOGENOM:HOG000076160 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 RefSeq:YP_165560.1
ProteinModelPortal:Q5LX83 GeneID:3193859 KEGG:sil:SPO0297
PATRIC:23373847 OMA:LICHMAD ProtClustDB:CLSK835631 Uniprot:Q5LX83
Length = 316
Score = 188 (71.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 61/181 (33%), Positives = 83/181 (45%)
Query: 33 DPXXXXXXXXXXXXGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
DP G +VA PT+T+YGL DATN +A+ +Y K R PL V+
Sbjct: 12 DPDGIARAAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASA 71
Query: 93 TDIPKWADTHTVSFELLAELLPGPVTIVFN-RSEHLNLEL-NPNVTKVAVRIPDHKFLRQ 150
+ + L PGP+T+V R+ H EL + +AVR+P H R
Sbjct: 72 EAARRHVHWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTART 131
Query: 151 LLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDL 207
LL +D P+A SAN S S T + L +++ V+D G P G STIV L
Sbjct: 132 LLATLDRPVAAPSANPSGRISPTTADHVLAGLDGRIAAVLDAG----PCGVGVESTIVGL 187
Query: 208 S 208
S
Sbjct: 188 S 188
>ASPGD|ASPL0000000720 [details] [associations]
symbol:AN10771 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:BN001301 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 OMA:PLIVHID
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 EnsemblFungi:CADANIAT00006938 Uniprot:C8V2S3
Length = 427
Score = 138 (53.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 44/117 (37%), Positives = 61/117 (52%)
Query: 108 LLAELLPGPVTIVF-NRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
L+ PGP+TI+ N S L E+ N+T VR+P R L+ + D PLA SAN
Sbjct: 131 LIERFWPGPLTILLPNPSGSRLAPEVTSNLTTFGVRMPLSPLARLLIHVADRPLAAPSAN 190
Query: 166 ESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
S +PS T + F L ++ +++DGG P G ST+VD N SI+R G
Sbjct: 191 ASTKPSPTAAEHVFHDLQGRIELILDGG----PCGVGVESTVVD-GLSNPPSILRPG 242
Score = 99 (39.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
VA PT+T+YGL DAT S A+ +Y+ K+R + PL + + +
Sbjct: 58 VAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSL 100
>UNIPROTKB|Q10618 [details] [associations]
symbol:MT1340 "Uncharacterized protein Rv1301/MT1340"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 PIR:A70774 RefSeq:NP_215817.1 RefSeq:NP_335788.1
RefSeq:YP_006514678.1 ProteinModelPortal:Q10618 SMR:Q10618
PRIDE:Q10618 EnsemblBacteria:EBMYCT00000003315
EnsemblBacteria:EBMYCT00000069301 GeneID:13319883 GeneID:886970
GeneID:924728 KEGG:mtc:MT1340 KEGG:mtu:Rv1301 KEGG:mtv:RVBD_1301
PATRIC:18124714 TubercuList:Rv1301 HOGENOM:HOG000076161 OMA:LAFSKQQ
ProtClustDB:CLSK791088 Uniprot:Q10618
Length = 217
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 54/186 (29%), Positives = 96/186 (51%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVS 105
G +V +PTDT+YG+ DA +S A+ L K R + P+ + V I +
Sbjct: 27 GQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYSMPDGA 86
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
EL+ PG +++V ++ L +L V +R+P H +LL+ + P+A++SAN
Sbjct: 87 RELIRAFWPGALSLVVVQAPSLQWDLGDAHGTVMLRMPLHPVAIELLREV-GPMAVSSAN 145
Query: 166 ESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG-VCYD 223
S P + + + +L ++V +D G + ++ GSTIVDL+ ++R G V +
Sbjct: 146 ISGHPPPVDAEQARSQLGDHVAVYLDAG--PSEQQAGSTIVDLTGATP-RVLRPGPVSTE 202
Query: 224 KILKIL 229
+I ++L
Sbjct: 203 RIAEVL 208
>UNIPROTKB|Q8ECV7 [details] [associations]
symbol:yciO "RNA binding protein YciO" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_718584.1
ProteinModelPortal:Q8ECV7 SMR:Q8ECV7 GeneID:1170704
KEGG:son:SO_3016 PATRIC:23525668 ProtClustDB:CLSK906958
Uniprot:Q8ECV7
Length = 206
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+ PTD+ Y L C A+ + I++ + + ++ +++++ +A ++
Sbjct: 27 GGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATYAKVDNQAY 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK-VAVRIPDHKFLRQLLKLMDSPLALTSA- 164
+L PGP T +F S+ + L + K + +R+PD+ LL+ +D+PL TS
Sbjct: 87 RILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIGIRVPDNVIALALLEALDAPLMSTSLV 146
Query: 165 ---NESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
E E I + L Q+ V+I GG + +T++D+SE+ + ++R+G
Sbjct: 147 MPDAEFAESDPEQIRDL--LEHQVDVIIHGGYLGEKP---TTVIDMSEDG-FEVLREG 198
>UNIPROTKB|Q9KSS8 [details] [associations]
symbol:VC_1178 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 PIR:E82233 RefSeq:NP_230823.1 ProteinModelPortal:Q9KSS8
SMR:Q9KSS8 DNASU:2614611 GeneID:2614611 KEGG:vch:VC1178
PATRIC:20081446 OMA:RYFDVHP ProtClustDB:CLSK874245 Uniprot:Q9KSS8
Length = 206
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 45/178 (25%), Positives = 84/178 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VV PTD+ Y L C N + + +I++ D + +++++ +A +F
Sbjct: 27 GGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELSLYARVDNTAF 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS-- 163
LL PGP T +F ++ + L N + +R+P++K LL+ + PL TS
Sbjct: 87 RLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEALGEPLMSTSLI 146
Query: 164 --ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
N+ E I + +L + V+++GG + +T++D S++ V + R G
Sbjct: 147 LPGNDFTESDPEEIRD--RLEHAVDVILNGGYLGQQP---TTVIDFSDDEVV-VARVG 198
>TIGR_CMR|SO_3016 [details] [associations]
symbol:SO_3016 "Sua5/YciO/YrdC/YwlC family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_718584.1
ProteinModelPortal:Q8ECV7 SMR:Q8ECV7 GeneID:1170704
KEGG:son:SO_3016 PATRIC:23525668 ProtClustDB:CLSK906958
Uniprot:Q8ECV7
Length = 206
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+ PTD+ Y L C A+ + I++ + + ++ +++++ +A ++
Sbjct: 27 GGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELATYAKVDNQAY 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK-VAVRIPDHKFLRQLLKLMDSPLALTSA- 164
+L PGP T +F S+ + L + K + +R+PD+ LL+ +D+PL TS
Sbjct: 87 RILKSCTPGPYTFIFKASKEVPRRLQNDKKKTIGIRVPDNVIALALLEALDAPLMSTSLV 146
Query: 165 ---NESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
E E I + L Q+ V+I GG + +T++D+SE+ + ++R+G
Sbjct: 147 MPDAEFAESDPEQIRDL--LEHQVDVIIHGGYLGEKP---TTVIDMSEDG-FEVLREG 198
>TIGR_CMR|VC_1178 [details] [associations]
symbol:VC_1178 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847 PIR:E82233
RefSeq:NP_230823.1 ProteinModelPortal:Q9KSS8 SMR:Q9KSS8
DNASU:2614611 GeneID:2614611 KEGG:vch:VC1178 PATRIC:20081446
OMA:RYFDVHP ProtClustDB:CLSK874245 Uniprot:Q9KSS8
Length = 206
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 45/178 (25%), Positives = 84/178 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G VV PTD+ Y L C N + + +I++ D + +++++ +A +F
Sbjct: 27 GGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELSLYARVDNTAF 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS-- 163
LL PGP T +F ++ + L N + +R+P++K LL+ + PL TS
Sbjct: 87 RLLKNNTPGPYTFIFKGTKEVPRRLMNEKRKTIGIRVPNNKIALDLLEALGEPLMSTSLI 146
Query: 164 --ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
N+ E I + +L + V+++GG + +T++D S++ V + R G
Sbjct: 147 LPGNDFTESDPEEIRD--RLEHAVDVILNGGYLGQQP---TTVIDFSDDEVV-VARVG 198
>POMBASE|SPCC895.03c [details] [associations]
symbol:SPCC895.03c "SUA5/yciO/yrdC family protein Sua5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 PomBase:SPCC895.03c GO:GO:0005829
GO:GO:0005634 GO:GO:0006417 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0006400 GO:GO:0000781 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 PIR:T41641 RefSeq:NP_588044.1
ProteinModelPortal:O94530 STRING:O94530 EnsemblFungi:SPCC895.03c.1
GeneID:2539596 KEGG:spo:SPCC895.03c HOGENOM:HOG000076160
OMA:PLIVHID OrthoDB:EOG4C8C27 NextBio:20800753 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 Uniprot:O94530
Length = 408
Score = 133 (51.9 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTK----VAVRIPDHKFLRQLLKLMDSPL 159
V L+ + PGP++I+ + N ++P VT AVR+P H L+ + DSPL
Sbjct: 130 VYLPLIKKFWPGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQHPVALALISISDSPL 189
Query: 160 ALTSANESNEPS-TLCINEFQKLWSQLSVVIDGG 192
A SAN S PS TL + + L ++ +++DGG
Sbjct: 190 AAPSANASTRPSPTLAKHVYNDLQGKIPLILDGG 223
Score = 95 (38.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
VA PT+T+YGL DA ++A+ +Y+ K R + PL + V+ + +
Sbjct: 56 VAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQL 101
>UNIPROTKB|Q47YC6 [details] [associations]
symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 RefSeq:YP_270194.1 ProteinModelPortal:Q47YC6
SMR:Q47YC6 STRING:Q47YC6 GeneID:3519220 KEGG:cps:CPS_3520
PATRIC:21469977 HOGENOM:HOG000076162 OMA:GWCGTEP
BioCyc:CPSY167879:GI48-3548-MONOMER Uniprot:Q47YC6
Length = 206
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 42/176 (23%), Positives = 83/176 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+ PTD+ Y L C + KA+ + I+ D + + +++ I ++ ++
Sbjct: 27 GGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKDHNFTLVCQDLSQISEYTRVDNTAY 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA- 164
LL PG T +F S+ + L NP + +R+PD+ + LL + P+ TS
Sbjct: 87 RLLKSNTPGAYTFIFKGSKEVPKRLLNPKKKTIGIRVPDNTIAQALLTELAEPIMSTSLI 146
Query: 165 NESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
E + + + L Q+ ++++GG + +T++D S +++ I+R G
Sbjct: 147 MPGQEMAEYDPEQIRDLLEHQVDLIVNGGYLGEHP---TTVIDFSNDSI-EIIRVG 198
>TIGR_CMR|CPS_3520 [details] [associations]
symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 RefSeq:YP_270194.1 ProteinModelPortal:Q47YC6
SMR:Q47YC6 STRING:Q47YC6 GeneID:3519220 KEGG:cps:CPS_3520
PATRIC:21469977 HOGENOM:HOG000076162 OMA:GWCGTEP
BioCyc:CPSY167879:GI48-3548-MONOMER Uniprot:Q47YC6
Length = 206
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 42/176 (23%), Positives = 83/176 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+ PTD+ Y L C + KA+ + I+ D + + +++ I ++ ++
Sbjct: 27 GGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKDHNFTLVCQDLSQISEYTRVDNTAY 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA- 164
LL PG T +F S+ + L NP + +R+PD+ + LL + P+ TS
Sbjct: 87 RLLKSNTPGAYTFIFKGSKEVPKRLLNPKKKTIGIRVPDNTIAQALLTELAEPIMSTSLI 146
Query: 165 NESNEPSTLCINEFQKLWS-QLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
E + + + L Q+ ++++GG + +T++D S +++ I+R G
Sbjct: 147 MPGQEMAEYDPEQIRDLLEHQVDLIVNGGYLGEHP---TTVIDFSNDSI-EIIRVG 198
>UNIPROTKB|Q885M0 [details] [associations]
symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC family protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_791636.1
ProteinModelPortal:Q885M0 SMR:Q885M0 GeneID:1183452
KEGG:pst:PSPTO_1811 PATRIC:19994886 ProtClustDB:CLSK867809
BioCyc:PSYR223283:GJIX-1846-MONOMER Uniprot:Q885M0
Length = 209
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/182 (28%), Positives = 83/182 (45%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +V PTD+ Y L C + AI + +++ D + +++ + +A T +F
Sbjct: 27 GGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLGLFAKVDTGAF 86
Query: 107 ELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
L PGP T + N + + L L+P + +R+P H + LL+ + PL S
Sbjct: 87 RALKAHTPGPYTFILNATREVPRLILHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLI 146
Query: 166 ESNEPSTLC--INEFQKLWSQLSVVIDGGI--ISNPERFGSTIVDLSEENVYSIVRKGVC 221
+ L Q L + ++IDGGI IS ST+++LSE IVR G C
Sbjct: 147 MPGDTVPLSDPYEMRQILEHHVDLIIDGGIGGIS-----ASTVINLSEGEP-QIVRVG-C 199
Query: 222 YD 223
D
Sbjct: 200 GD 201
>UNIPROTKB|P45748 [details] [associations]
symbol:tsaC "protein involved in synthesis of
threonylcarbamoyladenosine-modified tRNA" species:83333
"Escherichia coli K-12" [GO:0070526 "threonylcarbamoyladenosine
biosynthetic process" evidence=IGI;IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000049 "tRNA binding" evidence=IEA;IDA]
[GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U18997 GO:GO:0003725 GO:GO:0000049 GO:GO:0006364 GO:GO:0070526
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
PIR:E65120 RefSeq:NP_417741.1 RefSeq:YP_492150.1 PDB:1HRU
PDBsum:1HRU ProteinModelPortal:P45748 SMR:P45748 DIP:DIP-12916N
IntAct:P45748 MINT:MINT-1230775 PRIDE:P45748
EnsemblBacteria:EBESCT00000004855 EnsemblBacteria:EBESCT00000017773
GeneID:12933460 GeneID:947783 KEGG:ecj:Y75_p3894 KEGG:eco:b3282
PATRIC:32121998 EchoBASE:EB2689 EcoGene:EG12840
ProtClustDB:PRK10634 BioCyc:EcoCyc:G7698-MONOMER
BioCyc:ECOL316407:JW3243-MONOMER EvolutionaryTrace:P45748
Genevestigator:P45748 Uniprot:P45748
Length = 190
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 43/146 (29%), Positives = 67/146 (45%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT---VS 105
V+A PT+ ++G+ CD + A+ L E+K+R V+K L + + + + D V
Sbjct: 22 VIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQ 81
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
E + PGPVT VF L +AVR+ DH + L + PL TSAN
Sbjct: 82 RETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSAN 141
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDG 191
S P ++E + + V+ G
Sbjct: 142 LSGLPPCRTVDEVRAQFGAAFPVVPG 167
>UNIPROTKB|Q83D35 [details] [associations]
symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_819924.1
ProteinModelPortal:Q83D35 SMR:Q83D35 GeneID:1208802
KEGG:cbu:CBU_0909 PATRIC:17930519 ProtClustDB:CLSK914406
BioCyc:CBUR227377:GJ7S-900-MONOMER Uniprot:Q83D35
Length = 204
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 42/178 (23%), Positives = 86/178 (48%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++A TD+ Y L C N + +++ + P + ++++I +A F
Sbjct: 26 GGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIAVYARIANPVF 85
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPL---ALT 162
L PGP T + + + + +L +P + +R+PDH+ ++ +L+ + PL L
Sbjct: 86 RFLKAHTPGPYTFILSATRAVPRQLQHPKRKTIGIRVPDHRVIQAILEQLQEPLMNVTLI 145
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIIS-NPERFGSTIVDLSEENVYSIVRKG 219
E PS + E +L +Q+ +++D G+ P +T++DL + +I+R+G
Sbjct: 146 FPGEQWAPSEISERE-DELAAQVDLIVDSGVCGVEP----TTVIDLVDGEP-TILREG 197
>TIGR_CMR|CBU_0909 [details] [associations]
symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_819924.1
ProteinModelPortal:Q83D35 SMR:Q83D35 GeneID:1208802
KEGG:cbu:CBU_0909 PATRIC:17930519 ProtClustDB:CLSK914406
BioCyc:CBUR227377:GJ7S-900-MONOMER Uniprot:Q83D35
Length = 204
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 42/178 (23%), Positives = 86/178 (48%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++A TD+ Y L C N + +++ + P + ++++I +A F
Sbjct: 26 GGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIAVYARIANPVF 85
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPL---ALT 162
L PGP T + + + + +L +P + +R+PDH+ ++ +L+ + PL L
Sbjct: 86 RFLKAHTPGPYTFILSATRAVPRQLQHPKRKTIGIRVPDHRVIQAILEQLQEPLMNVTLI 145
Query: 163 SANESNEPSTLCINEFQKLWSQLSVVIDGGIIS-NPERFGSTIVDLSEENVYSIVRKG 219
E PS + E +L +Q+ +++D G+ P +T++DL + +I+R+G
Sbjct: 146 FPGEQWAPSEISERE-DELAAQVDLIVDSGVCGVEP----TTVIDLVDGEP-TILREG 197
>UNIPROTKB|Q83AA2 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:227377 "Coxiella burnetii RSA 493"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 TIGRFAMs:TIGR00057
RefSeq:NP_820978.1 HSSP:P45748 ProteinModelPortal:Q83AA2
GeneID:1209916 KEGG:cbu:CBU_2003 PATRIC:17932747 OMA:IAIRVTA
ProtClustDB:CLSK915181 BioCyc:CBUR227377:GJ7S-1976-MONOMER
Uniprot:Q83AA2
Length = 186
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 40/127 (31%), Positives = 60/127 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PT+ +YGL CD N A+ L IKKR + K + SE + T +
Sbjct: 18 GGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPL--TEPIDP 75
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+ LA + PGP T F S+ + + +A+R+ H + L + PL +S
Sbjct: 76 KALARVFDTWPGPFTWTFPASKEAPHWITGQHSTIAIRVTAHPLAKLLCQRFAGPLISSS 135
Query: 164 ANESNEP 170
AN+ EP
Sbjct: 136 ANQEGEP 142
>TIGR_CMR|CBU_2003 [details] [associations]
symbol:CBU_2003 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 TIGRFAMs:TIGR00057
RefSeq:NP_820978.1 HSSP:P45748 ProteinModelPortal:Q83AA2
GeneID:1209916 KEGG:cbu:CBU_2003 PATRIC:17932747 OMA:IAIRVTA
ProtClustDB:CLSK915181 BioCyc:CBUR227377:GJ7S-1976-MONOMER
Uniprot:Q83AA2
Length = 186
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 40/127 (31%), Positives = 60/127 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+A PT+ +YGL CD N A+ L IKKR + K + SE + T +
Sbjct: 18 GGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPL--TEPIDP 75
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+ LA + PGP T F S+ + + +A+R+ H + L + PL +S
Sbjct: 76 KALARVFDTWPGPFTWTFPASKEAPHWITGQHSTIAIRVTAHPLAKLLCQRFAGPLISSS 135
Query: 164 ANESNEP 170
AN+ EP
Sbjct: 136 ANQEGEP 142
>DICTYBASE|DDB_G0278955 [details] [associations]
symbol:DDB_G0278955 "YrdC domain-containing protein,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 dictyBase:DDB_G0278955
EMBL:AAFI02000024 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 TIGRFAMs:TIGR00057
InterPro:IPR005145 Pfam:PF03481 RefSeq:XP_647810.1
ProteinModelPortal:Q54XJ3 STRING:Q54XJ3 EnsemblProtists:DDB0218132
GeneID:8621770 KEGG:ddi:DDB_G0278955 InParanoid:Q54XJ3 OMA:TDPVIVH
ProtClustDB:CLSZ2729382 Uniprot:Q54XJ3
Length = 403
Score = 165 (63.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSE---ITDIPKWADTHT 103
G +VA PT+T+YGL +A + A+ +++ K R + P+ + + E + K +
Sbjct: 28 GGLVAFPTETVYGLGANALDKDAVLSIFKAKGRPLTDPVIVHIIESEYALKLLKLTEKQK 87
Query: 104 VSFELLAE-LLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALT 162
F++L++ PGP+TIV SE + + + V VR P+H +QL+K P+A
Sbjct: 88 EIFQVLSDNFWPGPLTIVAKSSELIPMIVTAETGYVGVRFPNHPLAQQLIKHSGKPIAAP 147
Query: 163 SANESNEPSTLCIN 176
SAN S N
Sbjct: 148 SANRFGHVSPTTAN 161
Score = 36 (17.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 202 STIVDLSEENVYSIVRKGVCYDKILK 227
ST++ + ++ I+R+G +K LK
Sbjct: 209 STVLKIVSDSELVILRRGGVSEKSLK 234
>UNIPROTKB|Q88B46 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:223283 "Pseudomonas syringae pv. tomato str.
DC3000" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0008033 EMBL:AE016853 GenomeReviews:AE016853_GR
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
HSSP:P45748 RefSeq:NP_790033.1 ProteinModelPortal:Q88B46
GeneID:1181782 KEGG:pst:PSPTO_0174 PATRIC:19991500
ProtClustDB:CLSK865536 BioCyc:PSYR223283:GJIX-173-MONOMER
Uniprot:Q88B46
Length = 185
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 50/170 (29%), Positives = 80/170 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIP-KWADTHTVS 105
G V+A PT+ ++GL CD + +A+ L IK R V K L + I + D +
Sbjct: 17 GAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKLRPVEKGLILIADNIRQFDFLFEDFPELW 76
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+ +A PGP T + L + VA+R+ DH +R+L L+ PL TSAN
Sbjct: 77 LDRMASTWPGPNTWLVPHQNLLPEWITGIHETVALRVTDHPTVRELCALV-GPLISTSAN 135
Query: 166 ESNEP---STLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
+ P S L + ++ + Q++ V+ G + R S I D++ V
Sbjct: 136 PAGRPAARSRLRVEQYFR--GQINGVLGGSL--GGRRNPSVIRDIATGQV 181
>UNIPROTKB|Q605R9 [details] [associations]
symbol:MCA2209 "Sua5/YciO/YrdC/YwlC family protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017282 GenomeReviews:AE017282_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:YP_114629.1
ProteinModelPortal:Q605R9 SMR:Q605R9 GeneID:3102131
KEGG:mca:MCA2209 PATRIC:22608270 Uniprot:Q605R9
Length = 207
Score = 150 (57.9 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 42/176 (23%), Positives = 84/176 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G V+ PTD+ Y C A++ + I++ D + +++ + +A + +F
Sbjct: 27 GGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICHDLSQVSAFARINNEAF 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
L+ L PGP T + + + L +P + +R+PD+ + L+ + PL ++
Sbjct: 87 RLIKTLTPGPYTFLLEATREVPRRLQHPKRKTIGIRLPDNAVSQMLVAELGEPLFSSTLI 146
Query: 166 ESNEPSTLCINEF--QKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
E L E +++ +++ +++ G+I E +TIVDL+ E IVR+G
Sbjct: 147 LPGETEGLADPEDIRERVGTRVELILAAGVIPFAE---TTIVDLTGEFPV-IVRQG 198
>UNIPROTKB|Q0C144 [details] [associations]
symbol:HNE_1848 "Sua5/YciO/YrdC/YwlC family protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000158 GenomeReviews:CP000158_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930
RefSeq:YP_760549.1 ProteinModelPortal:Q0C144 STRING:Q0C144
GeneID:4287782 KEGG:hne:HNE_1848 PATRIC:32216527 OMA:GQLASHY
ProtClustDB:CLSK777606 BioCyc:HNEP228405:GI69-1874-MONOMER
Uniprot:Q0C144
Length = 313
Score = 161 (61.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 58/187 (31%), Positives = 90/187 (48%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA+PT+T+YGLA DA N A+ LY+ K R PL VS T++ +
Sbjct: 23 GGLVAMPTETVYGLAADAANPDAVVRLYQAKGRPRFNPLIAHVSG-TEMASREAVFSPLA 81
Query: 107 ELLAELL-PGPVTIVFNRSEHLNL-EL-NPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
E LAE PGP+T+V + + + +L + V +R P H L+ P+ S
Sbjct: 82 ERLAEKFWPGPLTLVLPVNPNGTVCDLARSGLQTVGLRCPSHPAANALITEFGRPVVAPS 141
Query: 164 ANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKGV 220
AN S S T + L ++ +++DGG P G STI+ + E +++R G
Sbjct: 142 ANRSGHVSPTRAEHVAADLSDRIDLILDGG----PCDVGIESTILAVEGETA-TLLRSGA 196
Query: 221 CYDKILK 227
+L+
Sbjct: 197 IPSDVLE 203
>ZFIN|ZDB-GENE-030131-7332 [details] [associations]
symbol:wu:fj08f03 "wu:fj08f03" species:7955 "Danio
rerio" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
ZFIN:ZDB-GENE-030131-7332 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 EMBL:CR381540 GeneTree:ENSGT00390000010336
IPI:IPI00485023 Ensembl:ENSDART00000110424 Bgee:F1QWR2
Uniprot:F1QWR2
Length = 831
Score = 159 (61.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 53/203 (26%), Positives = 96/203 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKWADTHTVS 105
G + +PTDT+Y L +A+ Y +KK+ +P+++ V+ I + P +
Sbjct: 624 GGICGMPTDTVYVLVAACNRPQAVEKAYSVKKQAKERPMSLWVASIKQLEPVRKQISPIL 683
Query: 106 FELLAELLPGPVTIVFNRS---EHLNL-ELNPNV---TKVAVRIPDHKFLRQLLKLMDSP 158
++ + P +++V R+ E L + + + +A+R PD L+ + P
Sbjct: 684 WDFMEAAWPSSISLVIARAPWMEFFGLGDSSKYIGTPQSIAIRNPDCTVATHLINAV-GP 742
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLS--EENVYSI 215
+A+TSAN + E T N+ + KL ++ V+ G +PE ST+VD + E
Sbjct: 743 IAVTSANPTGEADTTHHNQVYAKLGDKVDGVLCDG--PSPENIASTVVDCTKIESGQIGF 800
Query: 216 VRKGVC-YDKILKI---LHKYHL 234
R G+ K+L+I + K HL
Sbjct: 801 FRVGLIPKSKVLQIFEEIQKKHL 823
>GENEDB_PFALCIPARUM|PFL0175c [details] [associations]
symbol:PFL0175c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014188
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
InterPro:IPR005145 Pfam:PF03481 RefSeq:XP_001350444.1
ProteinModelPortal:Q8I610 PRIDE:Q8I610
EnsemblProtists:PFL0175c:mRNA GeneID:811088 KEGG:pfa:PFL0175c
EuPathDB:PlasmoDB:PF3D7_1203500 HOGENOM:HOG000281153
ProtClustDB:CLSZ2431888 Uniprot:Q8I610
Length = 556
Score = 157 (60.3 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 47/188 (25%), Positives = 100/188 (53%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT--HTVSF 106
++ +PT+T+YGL ++ + +++ ++ +K R V+ P+ +S + +I + D H +
Sbjct: 29 LIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPI---ISHVYNIYQAYDQLYHINIY 85
Query: 107 E-----LLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
E +L++ PGP++I+ + L L AVRIPD+K R+++K+ ++P+A
Sbjct: 86 EKYIIYILSKYFWPGPLSIIAKAKKEAPLILTAYTQFCAVRIPDNKITREIIKICNTPIA 145
Query: 161 LTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
SAN+ S T ++ + + ++ ++ D G ST++ +++ Y I +
Sbjct: 146 APSANKFQHISPTNSLHVYDEFKNEDLLIFDDGQCD--VGIESTVLKITK---YRINHED 200
Query: 220 VCYDKILK 227
D++LK
Sbjct: 201 KNTDEVLK 208
>UNIPROTKB|Q8I610 [details] [associations]
symbol:PFL0175c "Conserved Plasmodium protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014188
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
InterPro:IPR005145 Pfam:PF03481 RefSeq:XP_001350444.1
ProteinModelPortal:Q8I610 PRIDE:Q8I610
EnsemblProtists:PFL0175c:mRNA GeneID:811088 KEGG:pfa:PFL0175c
EuPathDB:PlasmoDB:PF3D7_1203500 HOGENOM:HOG000281153
ProtClustDB:CLSZ2431888 Uniprot:Q8I610
Length = 556
Score = 157 (60.3 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 47/188 (25%), Positives = 100/188 (53%)
Query: 49 VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT--HTVSF 106
++ +PT+T+YGL ++ + +++ ++ +K R V+ P+ +S + +I + D H +
Sbjct: 29 LIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPI---ISHVYNIYQAYDQLYHINIY 85
Query: 107 E-----LLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
E +L++ PGP++I+ + L L AVRIPD+K R+++K+ ++P+A
Sbjct: 86 EKYIIYILSKYFWPGPLSIIAKAKKEAPLILTAYTQFCAVRIPDNKITREIIKICNTPIA 145
Query: 161 LTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
SAN+ S T ++ + + ++ ++ D G ST++ +++ Y I +
Sbjct: 146 APSANKFQHISPTNSLHVYDEFKNEDLLIFDDGQCD--VGIESTVLKITK---YRINHED 200
Query: 220 VCYDKILK 227
D++LK
Sbjct: 201 KNTDEVLK 208
>UNIPROTKB|Q48AU1 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 RefSeq:YP_266809.1 ProteinModelPortal:Q48AU1
STRING:Q48AU1 GeneID:3520388 KEGG:cps:CPS_0027 PATRIC:21463489
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
BioCyc:CPSY167879:GI48-144-MONOMER TIGRFAMs:TIGR00057
Uniprot:Q48AU1
Length = 183
Score = 135 (52.6 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 37/146 (25%), Positives = 70/146 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++A PT+ ++GL CD N +A+ L ++K+R K L + + + + D +
Sbjct: 13 GGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLPYIDDSKIPQ 72
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+ LL P +T + ++ +++ L+ + +AVRI + L + + P+ TS
Sbjct: 73 DKRLTLLSRWPDGITQLVPKNNNISSLLSGSFDTIAVRITSQPDVVALCQQTNKPIVSTS 132
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVI 189
AN S + E K W L +V+
Sbjct: 133 ANLSGQ-------EPAKTWQSLDLVL 151
>TIGR_CMR|CPS_0027 [details] [associations]
symbol:CPS_0027 "putative RNA-binding protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
RefSeq:YP_266809.1 ProteinModelPortal:Q48AU1 STRING:Q48AU1
GeneID:3520388 KEGG:cps:CPS_0027 PATRIC:21463489 eggNOG:COG0009
HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
BioCyc:CPSY167879:GI48-144-MONOMER TIGRFAMs:TIGR00057
Uniprot:Q48AU1
Length = 183
Score = 135 (52.6 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 37/146 (25%), Positives = 70/146 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G ++A PT+ ++GL CD N +A+ L ++K+R K L + + + + D +
Sbjct: 13 GGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLPYIDDSKIPQ 72
Query: 107 ELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
+ LL P +T + ++ +++ L+ + +AVRI + L + + P+ TS
Sbjct: 73 DKRLTLLSRWPDGITQLVPKNNNISSLLSGSFDTIAVRITSQPDVVALCQQTNKPIVSTS 132
Query: 164 ANESNEPSTLCINEFQKLWSQLSVVI 189
AN S + E K W L +V+
Sbjct: 133 ANLSGQ-------EPAKTWQSLDLVL 151
>UNIPROTKB|F1NT09 [details] [associations]
symbol:LOC428714 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR000791 InterPro:IPR006070 Pfam:PF01184 Pfam:PF01300
PROSITE:PS51163 GO:GO:0016020 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 EMBL:AADN02013506 IPI:IPI00602003
Ensembl:ENSGALT00000012180 GeneTree:ENSGT00390000010336 OMA:YSKYADA
Uniprot:F1NT09
Length = 825
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 50/197 (25%), Positives = 96/197 (48%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI-PKWADTHTVS 105
G +PTDT+Y L A+ + K++ +P+++ +S + + P +
Sbjct: 628 GGTCGIPTDTVYVLVAACNRPDAVEKAHRSKRQAQERPMSLWISSLKQLEPAKHLFSPLL 687
Query: 106 FELLAELLPGPVTIVFNRSEHLN-LELNPNVT------KVAVRIPDHKFLRQLLKLMDSP 158
++ + P P+++V R E ++ L + + VA+RIPD L+ L+ P
Sbjct: 688 WDFMDAAWPSPISLVIPRGEWVDFLGMKDSAKYVGTPQSVAIRIPDCSVTTHLIDLV-GP 746
Query: 159 LALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI-- 215
+ +TSAN + E T N+ + KL ++ V+ G +PE ST+VD ++ + +I
Sbjct: 747 IVVTSANPTGEADTTHHNQVYAKLGDKVDAVLCDG--PSPENIASTVVDCTKIDSGNIGF 804
Query: 216 VRKGVC-YDKILKILHK 231
R G+ ++L+IL +
Sbjct: 805 FRVGIIPKSQVLQILEQ 821
>TIGR_CMR|SO_2094 [details] [associations]
symbol:SO_2094 "hydrogenase maturation protein HypF"
species:211586 "Shewanella oneidensis MR-1" [GO:0003998
"acylphosphatase activity" evidence=ISS] [GO:0006464 "cellular
protein modification process" evidence=ISS] InterPro:IPR004421
InterPro:IPR006070 InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503
PIRSF:PIRSF006256 PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792
GO:GO:0046872 GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR017968 SUPFAM:SSF54975 PROSITE:PS00150 PROSITE:PS51160
KO:K04656 GO:GO:0016743 GO:GO:0046944 PANTHER:PTHR10029:SF4
HOGENOM:HOG000278743 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00143 HSSP:P30131 RefSeq:NP_717697.2
ProteinModelPortal:Q8EF91 GeneID:1169838 KEGG:son:SO_2094
PATRIC:23523806 OMA:AMCPDCA ProtClustDB:CLSK906583 Uniprot:Q8EF91
Length = 835
Score = 153 (58.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 46/140 (32%), Positives = 69/140 (49%)
Query: 58 YGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPV 117
+ L CDA NS A++ L + K+R KPLA+ + I ++ ++ L+ P+
Sbjct: 270 FHLMCDARNSHAVSQLRQRKQRKA-KPLAVMMPSIEMAKQYVTGTEAEWQTLSSP-ERPI 327
Query: 118 TIVFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCIN 176
++ EH LN E+ PN+ K+ V +P LL + PL TSAN S EP I
Sbjct: 328 VLMQALDEHDLNPEIAPNIPKLGVFLPYTPLHHLLLSQFNGPLVATSANVSGEP---IIT 384
Query: 177 EFQKLWSQLSVVIDGGIISN 196
+ L SQL V+D + N
Sbjct: 385 DCDALISQLGHVVDAIVDHN 404
>UNIPROTKB|G4MQP5 [details] [associations]
symbol:MGG_16276 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 EMBL:CM001231 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930
RefSeq:XP_003709944.1 ProteinModelPortal:G4MQP5
EnsemblFungi:MGG_16276T0 GeneID:12985299 KEGG:mgr:MGG_16276
Uniprot:G4MQP5
Length = 461
Score = 101 (40.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 33/109 (30%), Positives = 50/109 (45%)
Query: 103 TVSFELLAELLPGPVTIVFNRSEHLNL--ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLA 160
++ L+ PGP+TI+ + L E+ + R+P L++L PLA
Sbjct: 171 SIYLPLMERFWPGPLTILLPNPQPSRLAPEVTAGLPTFGARMPASPLALTLIRLAGVPLA 230
Query: 161 LTSANESNEPS-TLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVD 206
SAN S PS T + L +L +++DGG P G ST+VD
Sbjct: 231 APSANASTRPSPTTAHHVLDDLDGRLELILDGG----PCGVGVESTVVD 275
Score = 92 (37.4 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 50 VALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
V PT+T+YGL DAT S A+ +Y K R + PL + V ++
Sbjct: 80 VGFPTETVYGLGADATRSAAVRGIYAAKGRPSDNPLIVHVCDL 122
>SGD|S000003137 [details] [associations]
symbol:SUA5 "Single-stranded telomeric DNA-binding protein"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006450 "regulation of translational
fidelity" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IMP] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IDA] [GO:0070525
"threonylcarbamoyladenosine metabolic process" evidence=IMP]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 SGD:S000003137 GO:GO:0005634
GO:GO:0005737 EMBL:BK006941 GO:GO:0008033 EMBL:X85757 EMBL:X64319
GO:GO:0000781 GO:GO:0000723 GO:GO:0070525 GO:GO:0043047
GO:GO:0006450 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
OrthoDB:EOG4C8C27 InterPro:IPR005145 InterPro:IPR010923
Pfam:PF03481 PIRSF:PIRSF004930 EMBL:Z72691 PIR:S41991
RefSeq:NP_011346.1 ProteinModelPortal:P32579 SMR:P32579
DIP:DIP-2794N IntAct:P32579 MINT:MINT-497166 STRING:P32579
PaxDb:P32579 PeptideAtlas:P32579 EnsemblFungi:YGL169W GeneID:852707
KEGG:sce:YGL169W CYGD:YGL169w GeneTree:ENSGT00390000015364
OMA:LLITKET NextBio:972064 Genevestigator:P32579 GermOnline:YGL169W
Uniprot:P32579
Length = 426
Score = 145 (56.1 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 70 INILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN--RSEHL 127
++ + ++ ++ N+P S +IP ++ L++ L PGP+TI+ SEH
Sbjct: 105 VSSIDQLNRKVFNQPHLSGTSLFDNIP------SIYRPLISSLWPGPLTILLPVPSSEHS 158
Query: 128 NLE--LNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQ 184
L + AVRIP + R L+ L D+P+A SAN S PS TL + + L +
Sbjct: 159 ALSKLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVYHDLKDK 218
Query: 185 LSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG-VCYDKILKI 228
+ +++DGG ST+VD N +++R G Y++I+K+
Sbjct: 219 IPIILDGGACKVGVE--STVVD-GLCNPPTLLRPGGFTYEEIVKL 260
>TAIR|locus:2078668 [details] [associations]
symbol:AT3G01920 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AC010797 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 UniGene:At.48610
UniGene:At.41213 EMBL:AY079025 EMBL:AY143853 IPI:IPI00545644
RefSeq:NP_566156.2 HSSP:P45847 ProteinModelPortal:Q9SGI3 SMR:Q9SGI3
IntAct:Q9SGI3 STRING:Q9SGI3 PRIDE:Q9SGI3 EnsemblPlants:AT3G01920.1
GeneID:821220 KEGG:ath:AT3G01920 TAIR:At3g01920
HOGENOM:HOG000265231 InParanoid:Q9SGI3 OMA:LTLMCRD PhylomeDB:Q9SGI3
ProtClustDB:CLSN2690515 Genevestigator:Q9SGI3 Uniprot:Q9SGI3
Length = 307
Score = 134 (52.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA------D 100
G V +PTDT+Y +ACD N A+ L IKK + +KPL+I + DI + D
Sbjct: 93 GAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDTFTMGFPRGD 152
Query: 101 THTVS--FELLAELLPGPVTIVFNRSEHL 127
H + F + + LPGP T + S+ L
Sbjct: 153 GHGHANVFRAVKQCLPGPYTFILTASKEL 181
>UNIPROTKB|Q603G8 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0008033 GO:GO:0000049 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566
HSSP:P45748 RefSeq:YP_115232.1 ProteinModelPortal:Q603G8
GeneID:3104487 KEGG:mca:MCA2838 PATRIC:22609550 OMA:LYPTDTI
Uniprot:Q603G8
Length = 186
Score = 125 (49.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/141 (28%), Positives = 63/141 (44%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA PT+ +YGL CD N A+ L +K+R K L + +++ + D V
Sbjct: 19 GRIVAYPTEAVYGLGCDPFNEDAVRKLLALKRRSQIKGLILIAADVEAVESLVDLARVPL 78
Query: 107 --ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSA 164
E+ A PGP T + + L +AVR+ H L ++ + TSA
Sbjct: 79 GAEVRAGW-PGPTTWLIPPRPGIPDWLRGAHDSLAVRVTAHPVAAALCRVFGGAIVSTSA 137
Query: 165 NES-NEPSTLCINEFQKLWSQ 184
N S + P+ + +LW Q
Sbjct: 138 NLSGHRPARTPV----RLWRQ 154
>UNIPROTKB|P30131 [details] [associations]
symbol:hypF "hydrogenase maturation protein,
carbamoyltransferase" species:83333 "Escherichia coli K-12"
[GO:0051604 "protein maturation" evidence=IMP;IDA] [GO:0016743
"carboxyl- or carbamoyltransferase activity" evidence=IEA;IDA]
[GO:0046944 "protein carbamoylation" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA;IDA] InterPro:IPR004421 InterPro:IPR006070
InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503 PIRSF:PIRSF006256
PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0008270 InterPro:IPR017968 SUPFAM:SSF54975
PROSITE:PS00150 PROSITE:PS00151 PROSITE:PS51160 GO:GO:0051604
EMBL:U29579 EMBL:D14422 eggNOG:COG0068 KO:K04656 GO:GO:0016743
GO:GO:0046944 PANTHER:PTHR10029:SF4 PIR:D65051 RefSeq:NP_417192.1
RefSeq:YP_490921.1 PDB:1GXT PDB:1GXU PDBsum:1GXT PDBsum:1GXU
ProteinModelPortal:P30131 SMR:P30131 DIP:DIP-10000N
MINT:MINT-1276849 PRIDE:P30131 EnsemblBacteria:EBESCT00000000313
EnsemblBacteria:EBESCT00000000314 EnsemblBacteria:EBESCT00000000315
EnsemblBacteria:EBESCT00000000316 EnsemblBacteria:EBESCT00000017271
GeneID:12930433 GeneID:944963 KEGG:ecj:Y75_p2650 KEGG:eco:b2712
PATRIC:32120822 EchoBASE:EB1512 EcoGene:EG11551
HOGENOM:HOG000278743 OMA:DRENTSM ProtClustDB:CLSK880463
BioCyc:EcoCyc:EG11551-MONOMER BioCyc:ECOL316407:JW5433-MONOMER
BioCyc:MetaCyc:EG11551-MONOMER UniPathway:UPA00335
EvolutionaryTrace:P30131 Genevestigator:P30131 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 TIGRFAMs:TIGR00143
Uniprot:P30131
Length = 750
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 51/168 (30%), Positives = 80/168 (47%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA+ + LACDA NS A+ L K R KPLA+ + +P A
Sbjct: 213 GKIVAIKGIGGFHLACDARNSNAVATLRARKHRPA-KPLAVMLPVADGLPDAAR------ 265
Query: 107 ELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+LL P+ +V + L ++ P++ +V V +P + LL+ + PL +TS N
Sbjct: 266 QLLTTPA-APIVLVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGN 324
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE---RFGSTIVDLSEE 210
S +P + NE Q L + L + DG +I N + R ++V S E
Sbjct: 325 LSGKPPAIS-NE-QAL-ADLQGIADGFLIHNRDIVQRMDDSVVRESGE 369
>UNIPROTKB|Q8X849 [details] [associations]
symbol:hypF "Transcriptional regulatory protein"
species:83334 "Escherichia coli O157:H7" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR004421 InterPro:IPR006070
InterPro:IPR011125 Pfam:PF01300 Pfam:PF07503 PIRSF:PIRSF006256
PROSITE:PS51163 Pfam:PF00708 INTERPRO:IPR001792 GO:GO:0046872
GO:GO:0008270 InterPro:IPR017968 SUPFAM:SSF54975 PROSITE:PS00150
PROSITE:PS51160 EMBL:AE005174 GenomeReviews:AE005174_GR KO:K04656
GO:GO:0016743 GO:GO:0046944 PANTHER:PTHR10029:SF4
HOGENOM:HOG000278743 OMA:DRENTSM ProtClustDB:CLSK880463
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00143 HSSP:P30131 PIR:G85919 PIR:H91074
RefSeq:NP_289261.1 ProteinModelPortal:Q8X849 SMR:Q8X849
EnsemblBacteria:EBESCT00000027972 GeneID:957086 KEGG:ece:Z4020
PATRIC:18356601 Uniprot:Q8X849
Length = 750
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 51/168 (30%), Positives = 78/168 (46%)
Query: 47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
G +VA+ + LACDA NS A+ L K R KPLA+ + +P A
Sbjct: 213 GNIVAIKGIGGFHLACDARNSNAVATLRARKHRPA-KPLAVMLPVADGLPDAAR------ 265
Query: 107 ELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
+LL P+ +V + L ++ P + +V V +P + LL+ + PL +TS N
Sbjct: 266 QLLTTPA-APIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGN 324
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE---RFGSTIVDLSEE 210
S +P + NE Q L L + DG +I N + R ++V S E
Sbjct: 325 LSGKPPAIS-NE-QAL-EDLQGIADGFLIHNRDIVQRMDDSVVRESGE 369
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 245 233 0.00086 113 3 11 22 0.39 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 602 (64 KB)
Total size of DFA: 186 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.70u 0.10s 20.80t Elapsed: 00:00:01
Total cpu time: 20.71u 0.10s 20.81t Elapsed: 00:00:01
Start: Thu Aug 15 11:41:57 2013 End: Thu Aug 15 11:41:58 2013