RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy198
         (245 letters)



>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score =  101 bits (252), Expect = 5e-27
 Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 28  IVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
           I K+T     P     A   ++ G +V  PTDT+YGL  +A +  A+  L+ +K R  +K
Sbjct: 3   IRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHK 62

Query: 84  PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIP 143
           P++ICVS + +IP+++     + EL+  +LPGP T+V  R+E +   +    ++V +R+P
Sbjct: 63  PVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVP 122

Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGST 203
           D +  R++      P+  TSAN S +P +  + E  +    + +V+D G   + E   ST
Sbjct: 123 DDEICRRI--AARFPVTATSANISGKPPSPRLEEIVRDLDAVDLVLDAGDCLDME--PST 178

Query: 204 IVDLSEENVYSIVRKG 219
           ++DL+      ++R+G
Sbjct: 179 VIDLTVNPP-RVLRRG 193


>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score =  100 bits (249), Expect = 1e-26
 Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 11/203 (5%)

Query: 25  MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
           M     +   +P+  L+  A + ++KG V+  PTD+ Y L C   +  A+  +  I++  
Sbjct: 1   MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 60

Query: 81  VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSE-HLNLELNPNVTKVA 139
                 +   +++++  ++    V+F L+    PG  T +   ++      L      + 
Sbjct: 61  DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG 120

Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE--FQKLWSQLSVVIDGGIISNP 197
           +R+P +   + LL+ +  P+  TS        T    E    +L  Q+ ++I GG +   
Sbjct: 121 MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK 180

Query: 198 ERFGSTIVDLSEENVYSIVRKGV 220
               +T++DL+++    +VR+GV
Sbjct: 181 P---TTVIDLTDDTP-VVVREGV 199


>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 95.0 bits (235), Expect = 9e-25
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 5/176 (2%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
           A   L +  V+A PT+ ++G+ CD  +  A+  L E+K+R V+K L +  +    +  + 
Sbjct: 11  AIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 70

Query: 100 D---THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
           D      V  E +    PGPVT VF         L      +AVR+ DH  +  L +   
Sbjct: 71  DDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYG 130

Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
            PL  TSAN S  P    ++E +  +     V+ G          S I D     +
Sbjct: 131 KPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLN--PSEIRDALTGEL 184


>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 27.5 bits (61), Expect = 1.2
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 84  PLAICVSEITDIPKWADTHTVSF-ELLAELLPGPV-TIVFN---RSEHLNLELNPNVTKV 138
           P    ++ ++ +    ++  +   ++L+ L    V +  FN     + L  +  P   K 
Sbjct: 19  PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 78

Query: 139 AVRI 142
            + +
Sbjct: 79  PILL 82


>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 477

 Score = 27.6 bits (61), Expect = 1.7
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCI 175
           ++K  RQL++L+ + +     N   E   + +
Sbjct: 390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQV 421


>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus
           thermophilus [TaxId: 274]}
          Length = 347

 Score = 26.4 bits (57), Expect = 3.8
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 186 SVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
            +++  G++            L +  V           ++ K L   HL+ 
Sbjct: 13  PILVGEGVLKEVPPLAGPAALLFDRRVEGF------AQEVAKALGVRHLLG 57


>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 119

 Score = 24.3 bits (53), Expect = 8.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 137 KVAVRIPDHKFLRQLLKLMDSP 158
           + +V+  DH+FLR   +L+  P
Sbjct: 45  RYSVQTADHRFLRHDGRLVARP 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,705
Number of extensions: 39843
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 8
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)