BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1980
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P8C|D Chain D, Structure And Control Of The Actin Regulatory Wave
Complex
Length = 279
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R + P+ L P + EL+ V N +L N ++QL S+ A DIF
Sbjct: 1 MPLVKRNIDPRHLCH-------TALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L E + S + ++L+ R+ RL+ + DPK
Sbjct: 54 ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 29 KEGELDAVINNTLCNCLK-------QLGSVVSVAGDIFKQLNEELVAVS-EKTDALKA 78
+ G + AVIN + C ++ Q+G V + I L EEL+ S E DA++A
Sbjct: 10 QSGGVTAVINASACGVIQTARKHPDQIGKVYAGRNGIIGALKEELIDTSLESDDAIQA 67
>pdb|3PUM|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
pdb|3PUM|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
pdb|3PUN|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
With Lewis Y Tetrasaccharide
pdb|3PUN|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
With Lewis Y Tetrasaccharide
pdb|3PVD|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
Complexed With 3'-Sialyl-Lewis X Tetrasaccharide
pdb|3PVD|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
Complexed With 3'-Sialyl-Lewis X Tetrasaccharide
Length = 316
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 74 DALKARMARLNAHTEEFDPKLVTVRF 99
DA +A AR++ ++ F PK+ VRF
Sbjct: 122 DATRAHEARIDTGSDTFAPKIGQVRF 147
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 14 SRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEEL 66
SRN ++ PL++ DA + L+QL + +++GD+++++ + L
Sbjct: 838 SRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKAL 890
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 14 SRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEEL 66
SRN ++ PL++ DA + L+QL + +++GD+++++ + L
Sbjct: 838 SRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKAL 890
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 14 SRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEEL 66
SRN ++ PL++ DA + L+QL + +++GD+++++ + L
Sbjct: 817 SRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKAL 869
>pdb|3TD3|A Chain A, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|B Chain B, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|C Chain C, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|D Chain D, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|E Chain E, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|F Chain F, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|G Chain G, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|H Chain H, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD4|A Chain A, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|B Chain B, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|C Chain C, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|D Chain D, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|E Chain E, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|F Chain F, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|G Chain G, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|H Chain H, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD5|A Chain A, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|B Chain B, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|C Chain C, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|D Chain D, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|E Chain E, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|F Chain F, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|G Chain G, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|H Chain H, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
Length = 123
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTVRFS 100
+I Q E+ V+EK AR+ HT+ P+ + R S
Sbjct: 24 NIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLS 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,550,576
Number of Sequences: 62578
Number of extensions: 82777
Number of successful extensions: 210
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 10
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)