BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1980
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BH43|WASF2_MOUSE Wiskott-Aldrich syndrome protein family member 2 OS=Mus musculus
GN=Wasf2 PE=1 SV=1
Length = 497
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R ++P+ L R DT+ EL+ N TL N ++QLGS+ A DIF
Sbjct: 1 MPLVTRNIEPRHLCRQTLPSDTS--------ELECRTNITLANVIRQLGSLSKYAEDIFG 52
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
++ + A + + ++L R+ R+ + DPK
Sbjct: 53 EICTQASAFASRVNSLAERVDRVQVKVTQLDPK 85
>sp|Q9Y6W5|WASF2_HUMAN Wiskott-Aldrich syndrome protein family member 2 OS=Homo sapiens
GN=WASF2 PE=1 SV=3
Length = 498
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R ++P+ L R P V+ EL+ V N TL N ++QLGS+ A DIF
Sbjct: 1 MPLVTRNIEPRHLCRQTL-------PSVR-SELECVTNITLANVIRQLGSLSKYAEDIFG 52
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L + + + +L R+ RL + DPK
Sbjct: 53 ELFTQANTFASRVSSLAERVDRLQVKVTQLDPK 85
>sp|A2VDK6|WASF2_BOVIN Wiskott-Aldrich syndrome protein family member 2 OS=Bos taurus
GN=WASF2 PE=2 SV=1
Length = 493
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R ++P+ L R P V+ EL+ + N TL N ++QLGS+ A DIF
Sbjct: 1 MPLVTRNIEPRHLCRQTL-------PSVR-SELECMTNITLANVIRQLGSLSKYAEDIFG 52
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L + + + +L R+ RL + DPK
Sbjct: 53 ELFTQANTFASRVSSLAERVDRLQVKVTQLDPK 85
>sp|Q8R5H6|WASF1_MOUSE Wiskott-Aldrich syndrome protein family member 1 OS=Mus musculus
GN=Wasf1 PE=1 SV=2
Length = 559
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R + P+ L P + EL+ V N +L N ++QL S+ A DIF
Sbjct: 1 MPLVKRNIDPRHLCHT-------ALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L E + S + ++L+ R+ RL+ + DPK
Sbjct: 54 ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86
>sp|Q5BJU7|WASF1_RAT Wiskott-Aldrich syndrome protein family member 1 OS=Rattus
norvegicus GN=Wasf1 PE=2 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R + P+ L P + EL+ V N +L N ++QL S+ A DIF
Sbjct: 1 MPLVKRNIDPRHLCHT-------ALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L E + S + ++L+ R+ RL+ + DPK
Sbjct: 54 ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86
>sp|Q5NVG8|WASF1_PONAB Wiskott-Aldrich syndrome protein family member 1 OS=Pongo abelii
GN=WASF1 PE=2 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R + P+ L P + EL+ V N +L N ++QL S+ A DIF
Sbjct: 1 MPLVKRNIDPRHLCHT-------ALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L E + S + ++L+ R+ RL+ + DPK
Sbjct: 54 ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86
>sp|Q0IIJ3|WASF1_BOVIN Wiskott-Aldrich syndrome protein family member 1 OS=Bos taurus
GN=WASF1 PE=2 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R + P+ L P + EL+ V N +L N ++QL S+ A DIF
Sbjct: 1 MPLVKRNIDPRHLCHT-------ALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L E + S + ++L+ R+ RL+ + DPK
Sbjct: 54 ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86
>sp|Q92558|WASF1_HUMAN Wiskott-Aldrich syndrome protein family member 1 OS=Homo sapiens
GN=WASF1 PE=1 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R + P+ L P + EL+ V N +L N ++QL S+ A DIF
Sbjct: 1 MPLVKRNIDPRHLCHT-------ALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93
+L E + S + ++L+ R+ RL+ + DPK
Sbjct: 54 ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86
>sp|Q8VHI6|WASF3_MOUSE Wiskott-Aldrich syndrome protein family member 3 OS=Mus musculus
GN=Wasf3 PE=2 SV=1
Length = 501
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R ++P+ L R P EL+ V N+TL ++QL S+ A DIF
Sbjct: 1 MPLVKRNIEPRHLCR-------GALPEGVTSELECVTNSTLAAIIRQLSSLSKHAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFD 91
+L E + ++L+ R+ RL + D
Sbjct: 54 ELFNEANNFYIRANSLQDRIDRLAVKVTQLD 84
>sp|Q9UPY6|WASF3_HUMAN Wiskott-Aldrich syndrome protein family member 3 OS=Homo sapiens
GN=WASF3 PE=1 SV=2
Length = 502
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
MP V R ++P+ L R P EL+ V N+TL ++QL S+ A DIF
Sbjct: 1 MPLVKRNIEPRHLCR-------GALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFG 53
Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFD 91
+L E + ++L+ R+ RL + D
Sbjct: 54 ELFNEANNFYIRANSLQDRIDRLAVKVTQLD 84
>sp|Q5XPJ9|SCAR2_ARATH Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1
Length = 1399
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 33 LDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85
L+ V L L+QLG + A ++F L+EE++A + ++ L AR+ +L A
Sbjct: 32 LEGVAMAGLVGILRQLGDLAEFAAEMFHDLHEEVMATASRSHGLMARVQQLEA 84
>sp|Q9LP46|SCAR3_ARATH Protein SCAR3 OS=Arabidopsis thaliana GN=SCAR3 PE=1 SV=1
Length = 1020
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 33 LDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85
L+ V L L+QLG + A +IF + EE++A + +++ LK R+ + A
Sbjct: 26 LNGVAVTGLVGVLRQLGDLAEFAAEIFHGIQEEVMATASRSNQLKIRLQHIEA 78
>sp|Q6AWX6|SCAR1_ARATH Protein SCAR1 OS=Arabidopsis thaliana GN=SCAR1 PE=1 SV=1
Length = 821
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 33 LDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85
LD V + L L+QLG + A +IF + EE++ + +++ LK R+ ++ A
Sbjct: 32 LDDVAVSGLVGILRQLGDLTEFAAEIFHGIQEEVMITASRSNKLKMRLKQIEA 84
>sp|Q84TX2|SCRL1_ORYSJ SCAR-like protein 1 OS=Oryza sativa subsp. japonica
GN=Os03g0816900 PE=2 SV=2
Length = 2097
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89
E L+ V L L+QLG + A +IF L+E+++A + + L R+ +L A
Sbjct: 27 EALLEGVAMAGLVGVLRQLGDLAEFAAEIFHDLHEDVMATASRGHGLMLRLRQLEAEFPA 86
Query: 90 FDPKLVT 96
+ +++
Sbjct: 87 VEKAIIS 93
>sp|Q3ITN8|DTDA_NATPD D-tyrosyl-tRNA(Tyr) deacylase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=dtdA PE=3 SV=1
Length = 441
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 48 LGSVVSVAGDIFKQLNEELVAVSE-KTDALKARMARLNAHTEEFDPKL 94
+G V A D ++ L E L AV + K D+++ + + AH E FDP+L
Sbjct: 351 VGPVALAAADDYRSLVESLAAVLDTKYDSVEIEASTVIAHREAFDPEL 398
>sp|Q5XPJ6|SCAR4_ARATH Protein SCAR4 OS=Arabidopsis thaliana GN=SCAR4 PE=2 SV=1
Length = 1170
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85
E L+A L L+QLG + A ++F L+E+L+ + + L R+ L A
Sbjct: 29 EALLEAASMAGLVGVLRQLGDLSEFAAEVFHCLHEQLMTTAARGHGLAMRLQHLEA 84
>sp|Q5QNA6|SCRL2_ORYSJ SCAR-like protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0208600
PE=2 SV=1
Length = 1334
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 33 LDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85
L+ V L L+QLG + A D+F L+E+++ S + + R+ + A
Sbjct: 51 LEGVAVAGLVGILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEA 103
>sp|Q5XPK0|SCARL_ARATH Scar-like domain-containing protein WAVE 5 OS=Arabidopsis
thaliana GN=WAVE5 PE=1 SV=2
Length = 2028
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 33 LDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85
L AV L L+QLG + + ++F L EE+ + + L +R+ R+ +
Sbjct: 34 LGAVEVAGLIGILRQLGDLAEFSAEVFNGLQEEVTVTASRCQKLTSRVRRIES 86
>sp|O26878|LONB_METTH Archaeal Lon protease OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_785 PE=3 SV=1
Length = 644
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 27 LVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALK 77
+++E + A ++L L++LG +V AGDI K ELV + +A K
Sbjct: 361 IIREAQRRAGKKDSLTLKLRELGGLVRAAGDIAKSRGAELVETEDVIEAKK 411
>sp|Q67SJ2|SYV_SYMTH Valine--tRNA ligase OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=valS PE=3 SV=1
Length = 911
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 10 PKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAV 69
PK + R K L T G L K L+ ++N G + ++ ++ EE A+
Sbjct: 844 PKEIERLTKELTTTGDELAK---LEKKLSNE--------GFLTKAKPEVVEKTREEAAAL 892
Query: 70 SEKTDALKARMARLNA 85
+EK AL+ R+A L +
Sbjct: 893 AEKRQALENRLAMLRS 908
>sp|Q6CPX2|ATG16_KLULA Autophagy protein 16 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=ATG16 PE=3 SV=1
Length = 126
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91
++QL V+SV ++LN+EL++++ + + L+ R+ + A E+D
Sbjct: 61 IRQLHDVISVKNRDAERLNDELISINIENNLLQERLTHIQA---EYD 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,969,677
Number of Sequences: 539616
Number of extensions: 1099862
Number of successful extensions: 4463
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4439
Number of HSP's gapped (non-prelim): 35
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)