Query psy1980
Match_columns 100
No_of_seqs 90 out of 107
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:08:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1830|consensus 100.0 6E-41 1.3E-45 275.2 6.3 92 1-99 1-92 (518)
2 PF11945 WASH_WAHD: WAHD domai 96.8 0.0055 1.2E-07 49.0 7.4 58 40-97 19-76 (297)
3 PF06825 HSBP1: Heat shock fac 89.9 1 2.3E-05 27.8 4.7 41 50-90 3-47 (54)
4 PF05531 NPV_P10: Nucleopolyhe 88.3 0.96 2.1E-05 29.8 3.9 34 56-89 3-36 (75)
5 TIGR02976 phageshock_pspB phag 87.6 1.5 3.4E-05 28.6 4.6 36 58-93 36-71 (75)
6 TIGR02132 phaR_Bmeg polyhydrox 84.0 6.8 0.00015 29.9 7.1 22 68-89 111-132 (189)
7 TIGR02132 phaR_Bmeg polyhydrox 82.5 10 0.00022 29.0 7.5 52 38-89 34-97 (189)
8 PF00517 GP41: Retroviral enve 81.8 14 0.0003 27.9 8.1 51 38-88 13-63 (204)
9 PF06667 PspB: Phage shock pro 79.7 5.5 0.00012 26.1 4.6 31 63-93 41-71 (75)
10 PF04102 SlyX: SlyX; InterPro 77.5 15 0.00033 23.1 6.6 47 45-91 6-52 (69)
11 TIGR01834 PHA_synth_III_E poly 77.1 18 0.00038 29.6 7.8 43 51-93 272-318 (320)
12 PF04899 MbeD_MobD: MbeD/MobD 76.1 4.7 0.0001 26.1 3.5 38 57-94 28-65 (70)
13 PRK09458 pspB phage shock prot 75.7 6.5 0.00014 25.9 4.1 29 64-92 42-70 (75)
14 COG4396 Mu-like prophage host- 73.9 13 0.00028 27.7 5.7 57 31-87 10-70 (170)
15 PF06005 DUF904: Protein of un 68.6 16 0.00035 23.5 4.7 34 57-90 4-37 (72)
16 PF04380 BMFP: Membrane fusoge 68.1 30 0.00064 22.3 6.1 53 30-85 26-78 (79)
17 COG2960 Uncharacterized protei 68.0 31 0.00068 24.0 6.3 57 29-88 34-90 (103)
18 PF07889 DUF1664: Protein of u 67.9 37 0.0008 24.2 6.8 49 30-81 30-78 (126)
19 PRK05771 V-type ATP synthase s 66.9 17 0.00037 31.4 5.9 38 55-92 91-128 (646)
20 PF07323 DUF1465: Protein of u 65.4 10 0.00022 28.0 3.7 35 55-89 100-134 (156)
21 PF14712 Snapin_Pallidin: Snap 64.6 35 0.00075 21.9 7.3 24 61-84 68-91 (92)
22 PF04124 Dor1: Dor1-like famil 61.9 38 0.00081 27.0 6.6 54 39-92 21-74 (338)
23 KOG2629|consensus 61.8 18 0.00038 29.5 4.7 84 2-88 102-185 (300)
24 PRK05892 nucleoside diphosphat 61.7 36 0.00079 24.7 6.0 53 30-85 17-75 (158)
25 PHA03386 P10 fibrous body prot 60.5 20 0.00043 24.6 4.1 36 57-92 5-40 (94)
26 PF04977 DivIC: Septum formati 60.2 22 0.00047 21.7 4.0 29 62-90 22-50 (80)
27 COG5317 Uncharacterized protei 59.8 17 0.00036 27.3 3.9 37 52-88 100-145 (175)
28 PF07889 DUF1664: Protein of u 56.8 40 0.00088 24.0 5.4 44 51-94 83-126 (126)
29 PF06103 DUF948: Bacterial pro 56.4 50 0.0011 21.1 7.9 26 57-82 40-65 (90)
30 cd07686 F-BAR_Fer The F-BAR (F 56.2 82 0.0018 24.5 7.4 59 30-88 54-118 (234)
31 PF10046 BLOC1_2: Biogenesis o 56.0 44 0.00095 22.2 5.2 28 64-91 59-86 (99)
32 PF04380 BMFP: Membrane fusoge 55.9 53 0.0011 21.2 6.8 30 63-92 49-78 (79)
33 PF11945 WASH_WAHD: WAHD domai 55.6 22 0.00047 28.6 4.3 24 62-85 48-71 (297)
34 PF05597 Phasin: Poly(hydroxya 55.2 37 0.00081 24.2 5.0 18 74-91 112-129 (132)
35 PF07352 Phage_Mu_Gam: Bacteri 54.8 71 0.0015 22.5 6.4 49 41-89 5-57 (149)
36 PF10205 KLRAQ: Predicted coil 53.8 72 0.0016 22.1 6.1 42 49-90 32-73 (102)
37 COG1322 Predicted nuclease of 53.4 60 0.0013 27.7 6.7 55 36-90 329-392 (448)
38 TIGR01837 PHA_granule_1 poly(h 53.0 42 0.00092 23.1 4.9 16 74-89 99-114 (118)
39 PF10152 DUF2360: Predicted co 53.0 73 0.0016 22.8 6.3 45 38-82 2-46 (148)
40 TIGR02977 phageshock_pspA phag 51.7 53 0.0011 24.6 5.6 37 56-92 98-134 (219)
41 PHA02047 phage lambda Rz1-like 51.6 13 0.00029 25.7 2.2 37 60-96 30-66 (101)
42 PF06667 PspB: Phage shock pro 51.0 30 0.00066 22.6 3.7 32 50-81 35-66 (75)
43 PF03670 UPF0184: Uncharacteri 50.7 35 0.00075 22.9 4.0 33 59-91 28-60 (83)
44 smart00302 GED Dynamin GTPase 50.3 55 0.0012 21.4 4.9 36 55-90 54-89 (92)
45 PRK02793 phi X174 lysis protei 50.3 64 0.0014 20.5 7.3 53 41-93 6-58 (72)
46 PF00170 bZIP_1: bZIP transcri 50.3 49 0.0011 20.0 4.4 33 58-90 27-59 (64)
47 PF04899 MbeD_MobD: MbeD/MobD 49.5 49 0.0011 21.3 4.4 34 57-90 35-68 (70)
48 PF07106 TBPIP: Tat binding pr 49.4 94 0.002 22.1 7.5 77 11-94 58-139 (169)
49 PF07439 DUF1515: Protein of u 49.0 84 0.0018 22.2 5.8 51 41-91 3-60 (112)
50 PF12718 Tropomyosin_1: Tropom 48.4 94 0.002 22.1 6.2 45 46-90 17-61 (143)
51 PF09006 Surfac_D-trimer: Lung 48.1 36 0.00079 20.5 3.4 23 67-89 2-24 (46)
52 PRK00846 hypothetical protein; 47.6 79 0.0017 20.7 7.4 53 41-93 11-63 (77)
53 COG3879 Uncharacterized protei 47.0 43 0.00092 26.6 4.6 37 53-91 48-84 (247)
54 PRK14127 cell division protein 45.9 59 0.0013 22.6 4.7 33 59-91 39-71 (109)
55 PF04728 LPP: Lipoprotein leuc 45.2 72 0.0016 19.9 4.5 26 60-85 6-31 (56)
56 PF14435 SUKH-4: SUKH-4 immuni 45.2 40 0.00086 23.9 3.9 21 74-94 144-164 (179)
57 cd04779 HTH_MerR-like_sg4 Heli 45.2 46 0.00099 23.5 4.2 35 58-92 75-109 (134)
58 PF05659 RPW8: Arabidopsis bro 44.8 50 0.0011 23.7 4.4 44 53-96 9-52 (147)
59 PRK00888 ftsB cell division pr 44.3 60 0.0013 22.0 4.5 31 60-90 30-60 (105)
60 PRK00736 hypothetical protein; 43.9 81 0.0018 19.8 7.1 49 45-93 7-55 (68)
61 PRK14127 cell division protein 43.2 71 0.0015 22.2 4.8 25 60-84 47-71 (109)
62 PF10805 DUF2730: Protein of u 42.8 43 0.00092 22.7 3.6 25 59-83 37-61 (106)
63 PHA03395 p10 fibrous body prot 42.6 54 0.0012 22.2 4.0 32 57-88 4-35 (87)
64 TIGR02976 phageshock_pspB phag 41.7 44 0.00096 21.7 3.4 31 51-81 36-66 (75)
65 PF13093 FTA4: Kinetochore com 41.5 62 0.0013 24.7 4.6 39 57-95 142-183 (213)
66 PF10779 XhlA: Haemolysin XhlA 41.0 44 0.00096 20.9 3.2 30 61-90 3-32 (71)
67 PF12718 Tropomyosin_1: Tropom 40.8 94 0.002 22.1 5.2 38 53-90 17-54 (143)
68 PF15456 Uds1: Up-regulated Du 39.8 66 0.0014 22.7 4.3 28 59-87 24-51 (124)
69 PF00517 GP41: Retroviral enve 39.6 1.2E+02 0.0027 22.7 6.0 43 49-91 17-59 (204)
70 PRK10698 phage shock protein P 39.6 1E+02 0.0023 23.4 5.6 40 55-94 97-136 (222)
71 PF12443 AKNA: AT-hook-contain 39.6 59 0.0013 22.7 3.9 31 60-90 48-78 (106)
72 PF10393 Matrilin_ccoil: Trime 39.1 86 0.0019 18.8 4.7 20 61-80 27-46 (47)
73 PF01865 PhoU_div: Protein of 39.1 1.1E+02 0.0024 22.1 5.5 48 41-88 13-64 (214)
74 smart00338 BRLZ basic region l 38.9 88 0.0019 18.8 4.3 33 58-90 27-59 (65)
75 PF07303 Occludin_ELL: Occludi 38.9 60 0.0013 22.0 3.8 26 59-84 24-49 (101)
76 PRK00218 putative lysogenizati 38.8 95 0.0021 23.9 5.3 59 38-97 62-128 (207)
77 PF04356 DUF489: Protein of un 38.1 65 0.0014 24.5 4.3 58 39-97 57-122 (193)
78 PF05739 SNARE: SNARE domain; 37.9 84 0.0018 18.3 7.3 45 40-84 15-59 (63)
79 PRK09458 pspB phage shock prot 37.5 67 0.0014 21.1 3.7 31 51-81 36-66 (75)
80 COG1283 NptA Na+/phosphate sym 37.4 1.5E+02 0.0033 25.9 6.9 59 30-89 323-384 (533)
81 COG4842 Uncharacterized protei 37.4 77 0.0017 20.9 4.1 31 59-89 9-39 (97)
82 PF11690 DUF3287: Protein of u 37.3 1.4E+02 0.0031 20.8 6.3 57 37-93 21-80 (109)
83 PF14712 Snapin_Pallidin: Snap 37.3 56 0.0012 20.9 3.3 30 62-91 62-91 (92)
84 PRK10803 tol-pal system protei 37.2 1E+02 0.0022 23.9 5.3 49 39-87 54-105 (263)
85 PF05103 DivIVA: DivIVA protei 36.7 51 0.0011 22.0 3.2 33 59-91 27-59 (131)
86 PRK09966 putative inner membra 36.4 2.1E+02 0.0045 22.4 7.8 15 44-58 184-198 (407)
87 PHA01794 hypothetical protein 35.8 88 0.0019 22.7 4.4 40 55-94 73-112 (134)
88 PF04375 HemX: HemX; InterPro 35.4 2.3E+02 0.005 23.0 7.3 31 53-83 89-119 (372)
89 PF10805 DUF2730: Protein of u 35.3 81 0.0018 21.3 4.0 27 59-85 67-93 (106)
90 PF04508 Pox_A_type_inc: Viral 35.0 45 0.00098 17.3 2.1 15 74-88 4-18 (23)
91 PF01544 CorA: CorA-like Mg2+ 34.9 1.8E+02 0.004 21.3 6.4 35 54-88 189-223 (292)
92 smart00427 H2B Histone H2B. 34.5 86 0.0019 21.2 4.0 23 49-71 26-48 (89)
93 PF03449 GreA_GreB_N: Transcri 34.4 1E+02 0.0022 19.7 4.1 51 30-82 15-71 (74)
94 PF05377 FlaC_arch: Flagella a 34.4 83 0.0018 19.5 3.6 28 61-88 4-31 (55)
95 KOG3366|consensus 34.1 75 0.0016 24.0 4.0 42 50-91 13-54 (172)
96 cd01109 HTH_YyaN Helix-Turn-He 33.7 1.1E+02 0.0024 20.2 4.5 59 33-91 41-106 (113)
97 KOG3684|consensus 33.7 90 0.002 27.1 4.8 32 59-90 429-460 (489)
98 PF10334 DUF2421: Protein of u 33.5 1.5E+02 0.0033 22.2 5.6 50 39-88 12-69 (229)
99 PF13990 YjcZ: YjcZ-like prote 33.1 1.6E+02 0.0034 23.7 5.8 51 37-87 74-124 (270)
100 TIGR02231 conserved hypothetic 33.1 1.9E+02 0.0042 24.2 6.7 34 59-92 140-173 (525)
101 PRK05771 V-type ATP synthase s 32.9 1.1E+02 0.0024 26.5 5.3 39 57-95 86-124 (646)
102 PF07303 Occludin_ELL: Occludi 32.7 1E+02 0.0023 20.8 4.2 39 57-95 15-53 (101)
103 PF00125 Histone: Core histone 31.8 69 0.0015 19.5 3.0 23 51-73 36-58 (75)
104 PRK02119 hypothetical protein; 31.7 1.4E+02 0.003 19.0 6.7 49 45-93 11-59 (73)
105 PF06730 FAM92: FAM92 protein; 31.6 1.6E+02 0.0035 22.9 5.6 45 45-89 13-57 (219)
106 PF05565 Sipho_Gp157: Siphovir 31.3 2E+02 0.0043 20.7 8.0 47 42-88 39-85 (162)
107 TIGR01462 greA transcription e 31.3 1.1E+02 0.0023 21.7 4.3 55 30-86 11-71 (151)
108 PF01484 Col_cuticle_N: Nemato 31.2 1E+02 0.0023 17.4 6.7 43 35-77 8-50 (53)
109 PTZ00463 histone H2B; Provisio 31.2 98 0.0021 22.0 4.0 23 49-71 53-75 (117)
110 PF09304 Cortex-I_coil: Cortex 30.7 1.7E+02 0.0037 20.4 5.1 32 57-88 44-75 (107)
111 PF05008 V-SNARE: Vesicle tran 30.7 1.3E+02 0.0029 18.4 4.7 48 43-90 25-73 (79)
112 PRK00587 hypothetical protein; 30.5 81 0.0018 21.5 3.4 39 59-99 3-41 (99)
113 PF08893 DUF1839: Domain of un 30.5 1.1E+02 0.0025 25.1 4.7 42 42-83 237-289 (319)
114 TIGR00161 conserved hypothetic 30.5 1.3E+02 0.0028 22.9 4.9 45 41-86 186-230 (238)
115 PRK11637 AmiB activator; Provi 30.3 2.8E+02 0.006 22.7 7.1 8 5-12 10-17 (428)
116 PHA02675 ORF104 fusion protein 30.3 1.8E+02 0.0039 19.8 5.3 35 57-91 44-78 (90)
117 KOG0300|consensus 30.2 81 0.0018 26.8 3.9 29 56-84 49-77 (481)
118 PRK05683 flgK flagellar hook-a 30.1 2.3E+02 0.0049 25.3 6.9 56 35-90 130-185 (676)
119 COG5509 Uncharacterized small 30.0 93 0.002 19.9 3.3 28 66-93 27-54 (65)
120 PF06009 Laminin_II: Laminin D 29.6 17 0.00037 25.5 -0.1 50 37-90 50-102 (138)
121 PF12352 V-SNARE_C: Snare regi 29.6 1.3E+02 0.0028 17.9 7.3 52 37-88 6-60 (66)
122 PF14584 DUF4446: Protein of u 29.4 2.2E+02 0.0048 20.6 9.1 41 54-94 43-83 (151)
123 PF04100 Vps53_N: Vps53-like, 29.2 2.1E+02 0.0046 23.5 6.2 54 41-94 41-101 (383)
124 KOG2180|consensus 29.2 1.3E+02 0.0028 27.6 5.2 42 53-94 75-116 (793)
125 KOG3684|consensus 29.1 2E+02 0.0044 25.0 6.2 49 42-90 419-467 (489)
126 PHA03385 IX capsid protein IX, 29.1 1.8E+02 0.0039 21.1 5.0 36 53-88 96-131 (135)
127 PF14988 DUF4515: Domain of un 29.0 2E+02 0.0043 21.8 5.6 40 50-89 153-195 (206)
128 PF13747 DUF4164: Domain of un 29.0 81 0.0018 20.8 3.1 29 60-88 35-63 (89)
129 COG3937 Uncharacterized conser 28.8 1E+02 0.0023 21.6 3.7 21 66-86 85-105 (108)
130 PHA03074 late transcription fa 28.7 99 0.0021 24.2 3.9 27 39-66 50-76 (225)
131 PRK06799 flgK flagellar hook-a 28.6 2.8E+02 0.0061 23.0 6.9 50 41-90 141-190 (431)
132 PRK07521 flgK flagellar hook-a 28.3 2.7E+02 0.0059 23.4 6.8 58 34-91 124-181 (483)
133 PRK08871 flgK flagellar hook-a 28.3 2.6E+02 0.0056 24.7 6.9 54 37-90 135-188 (626)
134 KOG4571|consensus 28.0 93 0.002 25.4 3.8 32 59-90 250-281 (294)
135 PLN03217 transcription factor 27.9 1.6E+02 0.0034 20.1 4.4 28 51-78 50-77 (93)
136 PRK00295 hypothetical protein; 27.8 1.6E+02 0.0035 18.4 7.0 47 45-91 7-53 (68)
137 PLN00158 histone H2B; Provisio 27.6 1.2E+02 0.0026 21.5 3.9 23 49-71 52-74 (116)
138 PF01153 Glypican: Glypican; 27.3 1.3E+02 0.0027 26.2 4.7 39 34-72 108-146 (557)
139 PF00435 Spectrin: Spectrin re 27.2 1.5E+02 0.0032 17.7 5.8 48 41-88 50-97 (105)
140 cd01106 HTH_TipAL-Mta Helix-Tu 26.9 1.8E+02 0.004 18.8 5.7 60 32-91 40-100 (103)
141 PRK07122 RNA polymerase sigma 26.8 1.6E+02 0.0034 22.5 4.8 58 30-87 67-136 (264)
142 PF06103 DUF948: Bacterial pro 26.6 1.8E+02 0.0038 18.5 8.0 48 40-87 16-63 (90)
143 TIGR02135 phoU_full phosphate 26.6 2.2E+02 0.0049 19.7 6.6 43 45-87 11-57 (212)
144 PF06305 DUF1049: Protein of u 26.5 1E+02 0.0022 18.4 3.0 23 68-90 45-67 (68)
145 PF11487 RestrictionSfiI: Type 26.5 1.5E+02 0.0032 23.5 4.6 33 30-62 10-42 (262)
146 TIGR02978 phageshock_pspC phag 26.4 1.3E+02 0.0029 21.0 4.0 29 64-92 84-112 (121)
147 PF08287 DASH_Spc19: Spc19; I 26.3 2.1E+02 0.0046 20.7 5.1 42 53-94 64-105 (153)
148 cd04776 HTH_GnyR Helix-Turn-He 26.3 1E+02 0.0022 20.9 3.3 29 60-88 83-111 (118)
149 PF13887 MRF_C1: Myelin gene r 26.2 1.4E+02 0.003 17.1 3.8 30 56-85 6-35 (36)
150 PF02646 RmuC: RmuC family; I 26.2 3.3E+02 0.0071 21.5 7.2 51 39-89 213-272 (304)
151 PRK00888 ftsB cell division pr 25.8 1.3E+02 0.0028 20.4 3.7 28 59-86 36-63 (105)
152 smart00337 BCL BCL (B-Cell lym 25.8 1.2E+02 0.0027 19.9 3.6 32 30-61 5-44 (100)
153 TIGR02894 DNA_bind_RsfA transc 25.6 2.9E+02 0.0062 20.6 6.7 51 38-88 79-135 (161)
154 PHA01750 hypothetical protein 25.4 2E+02 0.0042 18.8 4.3 27 64-90 42-68 (75)
155 PF01920 Prefoldin_2: Prefoldi 25.3 1.6E+02 0.0035 18.6 4.0 31 59-89 7-37 (106)
156 PRK04406 hypothetical protein; 25.3 1.9E+02 0.0042 18.5 8.0 53 41-93 9-61 (75)
157 COG1191 FliA DNA-directed RNA 25.0 1.7E+02 0.0038 22.8 4.8 77 1-88 33-120 (247)
158 PRK12714 flgK flagellar hook-a 24.9 3.2E+02 0.0069 23.9 6.8 52 39-90 134-185 (624)
159 COG0782 Uncharacterized conser 24.9 85 0.0018 22.5 2.9 54 30-85 10-69 (151)
160 PF06156 DUF972: Protein of un 24.9 1.6E+02 0.0034 20.2 4.1 25 61-85 33-57 (107)
161 PF05455 GvpH: GvpH; InterPro 24.1 78 0.0017 23.9 2.6 20 41-60 18-37 (177)
162 PRK04325 hypothetical protein; 24.1 2E+02 0.0043 18.3 7.3 49 45-93 11-59 (74)
163 PF07716 bZIP_2: Basic region 24.1 1.6E+02 0.0035 17.2 4.5 27 59-85 27-53 (54)
164 cd00176 SPEC Spectrin repeats, 24.0 1.3E+02 0.0028 20.4 3.5 39 44-82 52-90 (213)
165 PF10280 Med11: Mediator compl 23.8 1.8E+02 0.0038 19.9 4.2 28 40-67 7-34 (117)
166 COG1491 Predicted RNA-binding 23.8 88 0.0019 24.2 2.8 46 29-77 88-133 (202)
167 PF11382 DUF3186: Protein of u 23.6 1.2E+02 0.0026 24.1 3.7 37 54-90 29-65 (308)
168 PRK11820 hypothetical protein; 23.5 85 0.0018 25.0 2.8 25 53-77 241-265 (288)
169 PRK14621 hypothetical protein; 23.2 1.3E+02 0.0029 20.7 3.4 30 59-88 6-35 (111)
170 PRK06945 flgK flagellar hook-a 23.0 3.7E+02 0.008 23.8 6.9 55 36-90 132-186 (651)
171 smart00304 HAMP HAMP (Histidin 23.0 65 0.0014 15.4 1.5 18 65-82 33-50 (53)
172 PRK10361 DNA recombination pro 23.0 3.9E+02 0.0085 23.1 6.8 52 36-87 343-403 (475)
173 PF10234 Cluap1: Clusterin-ass 22.8 1.8E+02 0.004 23.1 4.6 35 42-76 119-154 (267)
174 PF11853 DUF3373: Protein of u 22.8 1.3E+02 0.0027 26.2 3.9 21 72-92 32-52 (489)
175 KOG4796|consensus 22.6 2E+02 0.0042 25.7 5.0 60 27-94 486-546 (604)
176 KOG1655|consensus 22.5 1.2E+02 0.0026 23.7 3.3 29 62-90 17-45 (218)
177 PF11074 DUF2779: Domain of un 22.5 2.3E+02 0.0049 19.9 4.6 18 59-76 94-111 (130)
178 PF04906 Tweety: Tweety; Inte 22.5 3.7E+02 0.0081 22.2 6.5 50 38-87 84-134 (406)
179 PF09969 DUF2203: Uncharacteri 22.4 2.8E+02 0.006 19.3 7.0 34 60-93 46-79 (120)
180 PRK06665 flgK flagellar hook-a 22.3 5.4E+02 0.012 22.6 8.5 57 35-91 142-198 (627)
181 PRK00153 hypothetical protein; 22.3 1E+02 0.0023 20.5 2.7 32 59-90 5-36 (104)
182 PRK08147 flgK flagellar hook-a 21.9 4.3E+02 0.0092 22.5 6.9 54 38-91 134-187 (547)
183 COG3165 Uncharacterized protei 21.9 3.8E+02 0.0083 20.7 6.4 48 46-93 148-201 (204)
184 PF04849 HAP1_N: HAP1 N-termin 21.8 3.9E+02 0.0084 21.8 6.3 50 41-90 201-253 (306)
185 PF07436 Curto_V3: Curtovirus 21.5 1.4E+02 0.0031 20.0 3.2 21 43-63 32-52 (87)
186 PRK15396 murein lipoprotein; P 21.4 2.5E+02 0.0054 18.4 4.4 24 65-88 26-49 (78)
187 PRK10697 DNA-binding transcrip 21.3 1.6E+02 0.0034 20.7 3.5 27 66-92 83-109 (118)
188 PF09712 PHA_synth_III_E: Poly 21.2 4.2E+02 0.0092 21.0 7.4 32 53-84 257-292 (293)
189 PF13949 ALIX_LYPXL_bnd: ALIX 21.1 3E+02 0.0065 20.8 5.4 37 53-89 251-287 (296)
190 TIGR00634 recN DNA repair prot 21.1 3.8E+02 0.0082 22.8 6.4 50 42-91 269-321 (563)
191 PF07195 FliD_C: Flagellar hoo 20.8 1.8E+02 0.0039 21.9 4.0 26 61-86 197-222 (239)
192 smart00397 t_SNARE Helical reg 20.8 1.8E+02 0.0038 16.4 6.4 8 55-62 28-35 (66)
193 cd07623 BAR_SNX1_2 The Bin/Amp 20.7 3.7E+02 0.008 20.1 7.1 24 38-61 65-88 (224)
194 PF08647 BRE1: BRE1 E3 ubiquit 20.7 1.9E+02 0.0041 19.1 3.7 36 58-93 11-46 (96)
195 PF10224 DUF2205: Predicted co 20.3 2.7E+02 0.0058 18.3 5.2 16 65-80 31-46 (80)
196 PF11281 DUF3083: Protein of u 20.3 39 0.00085 27.7 0.3 63 6-76 141-204 (316)
197 PRK07191 flgK flagellar hook-a 20.2 5E+02 0.011 21.6 6.9 52 39-90 134-185 (456)
198 PRK10884 SH3 domain-containing 20.2 3.9E+02 0.0085 20.2 7.5 37 54-90 129-165 (206)
199 PRK06342 transcription elongat 20.1 2.7E+02 0.0058 20.2 4.7 46 30-85 40-85 (160)
No 1
>KOG1830|consensus
Probab=100.00 E-value=6e-41 Score=275.25 Aligned_cols=92 Identities=32% Similarity=0.526 Sum_probs=88.9
Q ss_pred CCCcccccccceeecCCCCCCcCCCCCCccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARM 80 (100)
Q Consensus 1 MPlvkR~VeP~~l~r~~~l~~~~~~~~~~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri 80 (100)
||||||+|+|+||||+ +++.+ ..+|||||||+||+|||||||||||||||||||||+|+++|++|+|+||+||
T Consensus 1 MPLvKRnIePrhlcr~-~lp~~------~~~ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~R~NSLQ~RI 73 (518)
T KOG1830|consen 1 MPLVKRNIEPRHLCRG-TLPSG------IRSELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNHRANSLQERI 73 (518)
T ss_pred CCCccccCchhhhhhh-ccccc------cccceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 9999999999999999 67764 3899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCceeeeeC
Q psy1980 81 ARLNAHTEEFDPKLVTVRF 99 (100)
Q Consensus 81 ~rL~~~v~~lD~k~~~V~~ 99 (100)
|||+.||+|||+|.|+|+|
T Consensus 74 DRL~vkVtqLDs~~eevsL 92 (518)
T KOG1830|consen 74 DRLAVKVTQLDSTVEEVSL 92 (518)
T ss_pred HHHhhhhhccCCccccccc
Confidence 9999999999999999987
No 2
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=96.85 E-value=0.0055 Score=49.04 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeee
Q psy1980 40 TLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTV 97 (100)
Q Consensus 40 tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~V 97 (100)
|+.-++..|.-|-+..+|||+-+.+-+.....|...|++||..+++||.++-..+..+
T Consensus 19 ti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi 76 (297)
T PF11945_consen 19 TILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI 76 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 4778888999999999999999999999999999999999999999999987666554
No 3
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=89.93 E-value=1 Score=27.85 Aligned_cols=41 Identities=10% Similarity=0.391 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhc
Q psy1980 50 SVVSVAGDIFKQLNEELVA----VSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 50 sLs~~AediF~eL~~e~~~----~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+|..+.++++.++.+-... |..|......|||.|+..+..|
T Consensus 3 elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 3 ELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5677777787777776655 5678888889999998888765
No 4
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=88.34 E-value=0.96 Score=29.80 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 56 GDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 56 ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.+||.-+-.++..+..++.+||.+|+.++..++.
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~ 36 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPD 36 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5789999999999999999999999999988876
No 5
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=87.62 E-value=1.5 Score=28.63 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+=++-...+..++.+.+.|++||+-||.-++.=+|+
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~e~P~ 71 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERIDTLERILDAEHPN 71 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 444566677788888999999999999988877765
No 6
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=83.97 E-value=6.8 Score=29.90 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy1980 68 AVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 68 ~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.+-.++..++.||.+|+.||.+
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~ 132 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDK 132 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 7
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=82.46 E-value=10 Score=28.97 Aligned_cols=52 Identities=6% Similarity=0.130 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQLN------------EELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~eL~------------~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
--+.+..|.+.+++.-.+-.+|++.. +++..++.|+-.|..|||+++..+.+
T Consensus 34 TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd 97 (189)
T TIGR02132 34 REEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDD 97 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888777888888764 57888899999999999998877765
No 8
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=81.81 E-value=14 Score=27.88 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
...|+++..|.+.+.+.=|.+.+-|..-+..+...+..|++||..+|.-+.
T Consensus 13 ~~~l~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~ 63 (204)
T PF00517_consen 13 AQLLNGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLK 63 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 345789999999999999999999999899999999999999999987664
No 9
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=79.68 E-value=5.5 Score=26.09 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 63 NEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 63 ~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
...+..++++...+++||+-||.-+..=+|+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILdae~P~ 71 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILDAEHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4556667777778888888888877655553
No 10
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=77.49 E-value=15 Score=23.07 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
|-.|=.-..|.++...+|...+..-......|+..+..|..++..+.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566667899999999999999999999999999999999999886
No 11
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=77.12 E-value=18 Score=29.63 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 51 VVSVAGDIFKQL----NEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 51 Ls~~AediF~eL----~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+.+..+++++.| -.|+..++.|...|+.|+.+|+..+.+++.+
T Consensus 272 ~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 272 QQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445566666665 4799999999999999999999999988654
No 12
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=76.10 E-value=4.7 Score=26.06 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
+=|.+|..-+.....+-..|..+|+.|...|..|+.+.
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777777777777777766544
No 13
>PRK09458 pspB phage shock protein B; Provisional
Probab=75.73 E-value=6.5 Score=25.92 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 64 EELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 64 ~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
..+..+.+++..+++||+-||+-+..=.|
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~ILDae~P 70 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAILDAEHP 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 34566677777888888888877654433
No 14
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=73.91 E-value=13 Score=27.70 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy1980 31 GELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEK----TDALKARMARLNAHT 87 (100)
Q Consensus 31 ~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R----~~~L~~Ri~rL~~~v 87 (100)
.++-.++..-.+..|||+|||.+-+--+=.+...+...+.++ ...|+.-|.-|+..|
T Consensus 10 A~~a~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~v 70 (170)
T COG4396 10 AIEAAQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRV 70 (170)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 444555555677899999999987777666666655555544 334444444444443
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.59 E-value=16 Score=23.49 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
++|..|..-+...-+....|+.+|+.|..+...+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5677777777777777777777777777765443
No 16
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=68.09 E-value=30 Score=22.35 Aligned_cols=53 Identities=32% Similarity=0.419 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
..|++...-..+-+.+..|.-+++ +=|.-....+..+-.|...|..||..|+.
T Consensus 26 ~~e~e~~~r~~l~~~l~kldlVtR---EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 26 REEIEKNIRARLQSALSKLDLVTR---EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555444333 33454555555555555555555555543
No 17
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.98 E-value=31 Score=24.03 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 29 KEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 29 ~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
...|+|.-.-..|- +||++|--..-+=|.-...-+-.+-++...|..||..|+++++
T Consensus 34 ~~~evE~~~r~~~q---~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 34 VRAEVEKAFRAQLQ---RQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred hHHHHHHHHHHHHH---HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777777666655 5777777777788988888889999999999999999999997
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.86 E-value=37 Score=24.16 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMA 81 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~ 81 (100)
..+|=+||+-.|++..- +++++=+++...|..-=..+..|...|-.++|
T Consensus 30 ~sD~M~vTrr~m~~A~~---~v~kql~~vs~~l~~tKkhLsqRId~vd~klD 78 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVA---SVSKQLEQVSESLSSTKKHLSQRIDRVDDKLD 78 (126)
T ss_pred hhHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 57888888888877653 33333333333333333333333333333333
No 19
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=66.91 E-value=17 Score=31.36 Aligned_cols=38 Identities=16% Similarity=0.430 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
++.-+.++.+++..+.+|.+.|++++.+++.....++|
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35567888888888888888888888888888777665
No 20
>PF07323 DUF1465: Protein of unknown function (DUF1465); InterPro: IPR010848 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.; PDB: 3CTW_D.
Probab=65.38 E-value=10 Score=27.97 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
....+.+|-..+..+-.|+..|+.||.+|...+-.
T Consensus 100 ~~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~ 134 (156)
T PF07323_consen 100 DPPGWAELPEGLRALIERSERLYERVARLDRMIYE 134 (156)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchhhhhccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999999999988764
No 21
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=64.58 E-value=35 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 61 QLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
.+-.++..++.|+..++.|+.+|+
T Consensus 68 ~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 68 NIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566666666666666666554
No 22
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=61.87 E-value=38 Score=26.96 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 39 NTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 39 ~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
.....+.+|+.+|++---+.|=+-.+....+..-...+..+++.|...+++++.
T Consensus 21 ~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~ 74 (338)
T PF04124_consen 21 EEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDE 74 (338)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999998888888777777777777777777777777777766653
No 23
>KOG2629|consensus
Probab=61.78 E-value=18 Score=29.50 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=51.4
Q ss_pred CCcccccccceeecCCCCCCcCCCCCCccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 2 PFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMA 81 (100)
Q Consensus 2 PlvkR~VeP~~l~r~~~l~~~~~~~~~~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~ 81 (100)
+|+|+.|-|.++--... .-+..+. .-++.-.=+..++.++.-+++.+++.-..=-.||+.++..+..+...|.+-+.
T Consensus 102 ~~~K~YV~P~~l~~~~~-k~e~~k~--~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~ 178 (300)
T KOG2629|consen 102 RFVKSYVLPRFLGESKD-KLEADKR--QLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIE 178 (300)
T ss_pred HHHHHHHHHHhhCccch-hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 57889999988876632 1111011 12333344456677777777777765555555777777777777667777777
Q ss_pred HHHhhhh
Q psy1980 82 RLNAHTE 88 (100)
Q Consensus 82 rL~~~v~ 88 (100)
+++..+.
T Consensus 179 k~esei~ 185 (300)
T KOG2629|consen 179 KLESEIN 185 (300)
T ss_pred HHHHHHH
Confidence 7665543
No 24
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=61.72 E-value=36 Score=24.65 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 30 EGELDAVINNTLCNCL------KQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nil------RQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
..||+..-+ --..++ |..|||++-|+..-. -.+...+-.|...|+.|+.+.+.
T Consensus 17 ~~EL~~L~~-~r~~i~~~i~~Ar~~GDlsENaey~aa--k~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 17 EAELARLRA-RRDRLAVEVNDRGMIGDHGDQAEAIQR--ADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHhCCCcchhhhHHHH--HHHHHHHHHHHHHHHHHHHhCEE
Confidence 467777765 355554 445999998885443 46677788888888888887654
No 25
>PHA03386 P10 fibrous body protein; Provisional
Probab=60.55 E-value=20 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.441 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
+|+--+-..+..+..++.+||.-++.++.....||.
T Consensus 5 nILl~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa 40 (94)
T PHA03386 5 SVLTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDG 40 (94)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhh
Confidence 466677778888888888888888888877666664
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=60.23 E-value=22 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 62 LNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 62 L~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+..++..+......++.+.+.|+..+..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555555555554444
No 27
>COG5317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.81 E-value=17 Score=27.26 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 52 VSVAGDIF---------KQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 52 s~~AediF---------~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+|.+.|-| .||-.....+-+|+-.||+||.++-..+-
T Consensus 100 ~kvrldt~~~~~~apgwneLP~~f~dLveRSlRLq~rVr~lDreiY 145 (175)
T COG5317 100 SKVRLDTPSADRDAPGWNELPESFRDLVERSLRLQARVRRLDREIY 145 (175)
T ss_pred HHHhhcCCccccCCcchhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566665 78999999999999999999999987764
No 28
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.80 E-value=40 Score=23.96 Aligned_cols=44 Identities=14% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
+++.-.+--.++..++..+..-++.++..|..|+.|+..++.|+
T Consensus 83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333344466777777777777778888888887777776653
No 29
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=56.41 E-value=50 Score=21.09 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMAR 82 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~r 82 (100)
+=..++..|+..+-+.++.+.+.++.
T Consensus 40 ~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 40 EQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544443
No 30
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=56.22 E-value=82 Score=24.49 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=46.4
Q ss_pred cchHHHHHHH--HHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 30 EGELDAVINN--TLCNCLKQLGSVVS----VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 30 ~~eLe~Vtn~--tL~nilRQL~sLs~----~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
.+++++.++. +-..+|-|+-++|+ ||+++=.++..+++.+......++..++.+..++.
T Consensus 54 ~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~ 118 (234)
T cd07686 54 TSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQQIE 118 (234)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777775 78889999998885 88988888888888887777888888877766554
No 31
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=55.97 E-value=44 Score=22.24 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 64 EELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 64 ~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
.++...-.....+...|..|+..|..||
T Consensus 59 ~~l~~~l~~Id~Ie~~V~~LE~~v~~LD 86 (99)
T PF10046_consen 59 EELQPYLQQIDQIEEQVTELEQTVYELD 86 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555555554
No 32
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=55.90 E-value=53 Score=21.16 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 63 NEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 63 ~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
-.|..........++.||+.|+.+|..|..
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357777888899999999999999998864
No 33
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=55.58 E-value=22 Score=28.61 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 62 LNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 62 L~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
-.+.+..+..|++.+|.||++|+.
T Consensus 48 ~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 48 NRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566778888888888888764
No 34
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=55.19 E-value=37 Score=24.21 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhhhcC
Q psy1980 74 DALKARMARLNAHTEEFD 91 (100)
Q Consensus 74 ~~L~~Ri~rL~~~v~~lD 91 (100)
..|..||+.|+..|..|-
T Consensus 112 ~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 112 EALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555543
No 35
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=54.81 E-value=71 Score=22.50 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVS----EKTDALKARMARLNAHTEE 89 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~----~R~~~L~~Ri~rL~~~v~~ 89 (100)
+...||+++.+-+--..|=.++..++..+. .....|+.||..|+..+.+
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999998877777777777775554 4456788999988887764
No 36
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=53.84 E-value=72 Score=22.10 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 49 GSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.+-.+--+.-..-+..|...+..|-..|..||..|+..+...
T Consensus 32 ~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 32 KEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444566677889999999999999999999999988743
No 37
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=53.35 E-value=60 Score=27.65 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 36 VINNTLCNCLKQLGSVV------SVA---GDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 36 Vtn~tL~nilRQL~sLs------~~A---ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
|+=.||..+|+-+..+- +.| .+.++.|+.++..|..+...++..+++......++
T Consensus 329 vsPttL~a~L~ti~~~~k~e~~~~na~eI~e~~~~L~~~~~~f~~~~~k~gk~L~~a~~~y~~~ 392 (448)
T COG1322 329 VSPTTLMALLNTIANGWKTERQEKNAKEIAEEVGKLYDEFGKFADRLEKLGKHLQQAVKSYDQA 392 (448)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665543 333 45678899999999999999999888877665543
No 38
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=53.01 E-value=42 Score=23.15 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhh
Q psy1980 74 DALKARMARLNAHTEE 89 (100)
Q Consensus 74 ~~L~~Ri~rL~~~v~~ 89 (100)
..|..||++|+.++..
T Consensus 99 ~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 99 EALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555544
No 39
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=52.98 E-value=73 Score=22.76 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMAR 82 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~r 82 (100)
|.-+.++.+.|+..+...|+-|.+++.-+..+-.+..=|..++..
T Consensus 2 N~Fi~~tv~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~S 46 (148)
T PF10152_consen 2 NHFIVHTVQFLNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSS 46 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455788999999999998888877766666555555555555433
No 40
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.68 E-value=53 Score=24.61 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 56 GDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 56 ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
+.-...|..++.....-+..|+.++..|+.++..+-.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777777777777777665533
No 41
>PHA02047 phage lambda Rz1-like protein
Probab=51.61 E-value=13 Score=25.74 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceee
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVT 96 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~ 96 (100)
|--+.++.+.+.+...++.|+..++..|..+..+.++
T Consensus 30 g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~ 66 (101)
T PHA02047 30 GIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNT 66 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777788888888888888888888777666544
No 42
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=51.01 E-value=30 Score=22.56 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 50 SVVSVAGDIFKQLNEELVAVSEKTDALKARMA 81 (100)
Q Consensus 50 sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~ 81 (100)
.|+.--++...+|++.+..+.+|...|..=+|
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555677889999999999999999976543
No 43
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=50.69 E-value=35 Score=22.89 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
|..|-..+..++.....|..|.+.|..++..|-
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555666666666666666666666666665543
No 44
>smart00302 GED Dynamin GTPase effector domain.
Probab=50.34 E-value=55 Score=21.38 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.++.|++|-.|-..+++|-+.++.++..|...-.-+
T Consensus 54 ~~~~~~~LL~E~~~i~~kR~~~~~~l~~L~~A~~~l 89 (92)
T smart00302 54 KEELLDELLEEDPEIASKRKELKKRLELLKKARQII 89 (92)
T ss_pred CcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366799999999999999999999999998765544
No 45
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.31 E-value=64 Score=20.50 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=42.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+-.=|-.|=.-..|-++.-.+|...+..-..-...|+..+..|..++..+++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44455566666789999999999999888888888888888888888877664
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.30 E-value=49 Score=19.98 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
-+.+|...+..+...-..|+..+..|...+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777776666554
No 47
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=49.47 E-value=49 Score=21.28 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
..|+.=..+...+..+++.|..++..|...+..|
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677778888889999999999999988887654
No 48
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.39 E-value=94 Score=22.12 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=39.7
Q ss_pred ceeecCCCCCCcCCCCCCccchHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHh
Q psy1980 11 KFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK---QLNEEL--VAVSEKTDALKARMARLNA 85 (100)
Q Consensus 11 ~~l~r~~~l~~~~~~~~~~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~---eL~~e~--~~~~~R~~~L~~Ri~rL~~ 85 (100)
+|+|.|..++. ...+|+..+..- +..+-.||..|......+-. .|..+. ..+......|+..+..++.
T Consensus 58 iY~~~Q~~~~~------~s~eel~~ld~e-i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 58 IYFANQDELEV------PSPEELAELDAE-IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred EEeeCccccCC------CCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57788743321 124566655544 55555555555544443333 333222 2345555666666666666
Q ss_pred hhhhcCCce
Q psy1980 86 HTEEFDPKL 94 (100)
Q Consensus 86 ~v~~lD~k~ 94 (100)
++..|..+.
T Consensus 131 kL~~l~~~~ 139 (169)
T PF07106_consen 131 KLEKLRSGS 139 (169)
T ss_pred HHHHHHhCC
Confidence 666555433
No 49
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=48.96 E-value=84 Score=22.20 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNE-EL------VAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~-e~------~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
++.+..|+++|.+--.+|=.++-. |- ..++.|...|..|+..|+..+..+.
T Consensus 3 ~a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk 60 (112)
T PF07439_consen 3 DAGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLK 60 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467788888887655555444421 11 1244455555555555555444443
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=48.36 E-value=94 Score=22.12 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 46 KQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 46 RQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
-++-.-.+-+++=+..+..|+..+..|...|...|+.++..+...
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777777777777777777777777776654
No 51
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.07 E-value=36 Score=20.50 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 67 VAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 67 ~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.++-.++..|+.++.+|+..+.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888776654
No 52
>PRK00846 hypothetical protein; Provisional
Probab=47.60 E-value=79 Score=20.73 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=43.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+..=|-.|=.-..|.++...+|...+..-..-...|+..+..|..++..+.+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44455566667889999999999999998889999999999999988877654
No 53
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.03 E-value=43 Score=26.58 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+.++++ +|.+|+..+..+.+.|+.+|..++.++.+.-
T Consensus 48 ~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 48 RRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 8899999999999999999999998887654
No 54
>PRK14127 cell division protein GpsB; Provisional
Probab=45.91 E-value=59 Score=22.60 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
|+.|..|...+..+...|+.+++.++..+....
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 566677777777788888888888877777543
No 55
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.21 E-value=72 Score=19.85 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
.+|..++..+..++..|+.=|..+..
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 56
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=45.19 E-value=40 Score=23.87 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhhcCCce
Q psy1980 74 DALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 74 ~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
......++++++.+.++||..
T Consensus 144 ~~~~~~~~~l~~~l~~iDp~a 164 (179)
T PF14435_consen 144 DEPEALAERLREELRAIDPAA 164 (179)
T ss_pred hhHHHHHHHHHHHHHHhChHh
Confidence 445555667777888888864
No 57
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.19 E-value=46 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
...++..++..+..+...|+.|+..++.....+|.
T Consensus 75 ~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 75 EQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777766654
No 58
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=44.78 E-value=50 Score=23.71 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceee
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVT 96 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~ 96 (100)
....-.|+||...+.....++..-+.-.++|...+..+-|.-++
T Consensus 9 aalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~e 52 (147)
T PF05659_consen 9 AALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKE 52 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHH
Confidence 34557889999999999999888888888888877777665443
No 59
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.30 E-value=60 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.++..++.....+...|+.|.++|+..+..|
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555544
No 60
>PRK00736 hypothetical protein; Provisional
Probab=43.89 E-value=81 Score=19.81 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
|-.|=.-..|-++.-.+|...+..-......|+.++..|..++..+++.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445555678888899998888888888888888888888888776643
No 61
>PRK14127 cell division protein GpsB; Provisional
Probab=43.21 E-value=71 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
.+|..++..+..+...++.|+...+
T Consensus 47 ~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 47 EELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4666777777777777777776554
No 62
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.77 E-value=43 Score=22.66 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARL 83 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL 83 (100)
+.+|...+.....|...+..+++.|
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444444433
No 63
>PHA03395 p10 fibrous body protein; Provisional
Probab=42.58 E-value=54 Score=22.16 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+||--+..++..+..++.+||.-++.++..++
T Consensus 4 NILl~Ir~dIkavd~KVdalQ~~V~~l~~nlp 35 (87)
T PHA03395 4 NILLLIRQDIKAVSDKVDALQAAVDDVRANLP 35 (87)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 56667777777777777777777777776665
No 64
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=41.75 E-value=44 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKARMA 81 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~Ri~ 81 (100)
|+..-++...+|+..+..+.+|...|..=+|
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666777789999999999999999976443
No 65
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=41.46 E-value=62 Score=24.69 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhcCCcee
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNA---HTEEFDPKLV 95 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~---~v~~lD~k~~ 95 (100)
+=|.+|..++..++.+-..++.|+++|.. .+.-+|...+
T Consensus 142 ~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~ 183 (213)
T PF13093_consen 142 ERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQE 183 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc
Confidence 45899999999999999999999987765 4444555554
No 66
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=41.01 E-value=44 Score=20.86 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
++...+..+-.|.+.+..|++.++..-+..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666554443
No 67
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.79 E-value=94 Score=22.12 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
..++.-+.+|..+....-+...+|+.|+..|+..|..+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666655544
No 68
>PF15456 Uds1: Up-regulated During Septation
Probab=39.77 E-value=66 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v 87 (100)
+.+|..|+..+..|...++.++. ++.++
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 57888999999999999888877 65554
No 69
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=39.62 E-value=1.2e+02 Score=22.67 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 49 GSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+.+++--+.+...+...-..+..|+..+++.|..|+++|..+.
T Consensus 17 ~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE 59 (204)
T PF00517_consen 17 NGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALE 59 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHH
Confidence 5667777777888877778888888888888888888887653
No 70
>PRK10698 phage shock protein PspA; Provisional
Probab=39.60 E-value=1e+02 Score=23.37 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
++.-..+|..++.....-+..|+..+.+|+.++..+-.|.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667888888888888888888888888887765544
No 71
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=39.56 E-value=59 Score=22.69 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.++..++-.+.+|+..|+.+|+..+.++.+-
T Consensus 48 ~ege~~~qkL~eqteeLK~kvqe~sk~i~~~ 78 (106)
T PF12443_consen 48 REGEQMIQKLGEQTEELKDKVQEFSKRIEQD 78 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 5678889999999999999999999888753
No 72
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=39.14 E-value=86 Score=18.75 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1980 61 QLNEELVAVSEKTDALKARM 80 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri 80 (100)
.|..-+..++.|...|..|+
T Consensus 27 ~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 27 SLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33333444555555555443
No 73
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=39.07 E-value=1.1e+02 Score=22.15 Aligned_cols=48 Identities=6% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNE----ELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~----e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+...+.+.+..+..+.++|..+.+ +......+...+..+-|++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~i~~lE~~aD~i~~~i~ 64 (214)
T PF01865_consen 13 FFDHFEEVAEASVLLAELLEAYLEGDYEDVEELLEEIKELEHEADEIKREIR 64 (214)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777776665 577777788888888777777664
No 74
>smart00338 BRLZ basic region leucin zipper.
Probab=38.95 E-value=88 Score=18.82 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
-..+|..++..+..-...|+.+++.|+..+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777776665543
No 75
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=38.92 E-value=60 Score=21.97 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
+.+|+.++..++.+...|...++++.
T Consensus 24 Yk~L~~~v~~v~~~f~~L~~~l~~l~ 49 (101)
T PF07303_consen 24 YKELHAEVDAVSRRFQELDSELKRLP 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555555555544444443
No 76
>PRK00218 putative lysogenization regulator; Reviewed
Probab=38.82 E-value=95 Score=23.90 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeee
Q psy1980 38 NNTLCNCLKQLG--------SVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTV 97 (100)
Q Consensus 38 n~tL~nilRQL~--------sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~V 97 (100)
..+|-.+..||+ .+.+|+-.|.. |+.-+..=.+-.+.|.+||++++..+..+|+.-+.|
T Consensus 62 ~~Gl~~L~~~L~~~~~~~~~el~RY~~~ll~-LErkL~k~~~~~~~L~~ri~~~~rQ~~hf~~~~~~v 128 (207)
T PRK00218 62 RLGLETLLNQLNSSRQGLDAELTRYALSLLA-LERKLSKNPDALNTLGERINQIQRQLEHFDLLHENV 128 (207)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345667777787 67788888774 777777778888999999999999999998765543
No 77
>PF04356 DUF489: Protein of unknown function (DUF489); InterPro: IPR007451 Protein of unknown function, cotranscribed with purB in Escherichia coli, but with function unrelated to purine biosynthesis [].; PDB: 1QZ4_A 1SDI_A.
Probab=38.08 E-value=65 Score=24.53 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeee
Q psy1980 39 NTLCNCLKQLG--------SVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTV 97 (100)
Q Consensus 39 ~tL~nilRQL~--------sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~V 97 (100)
.+|-.++.||+ ++.+|+-.+.. |+.-+..=..-.+.|..||++++.....+|+..+.|
T Consensus 57 ~Gl~~L~~~L~~~~~~~~~e~~RY~~~ll~-LErkL~k~~~~l~~l~~ri~~~~~Q~~hf~~~~~~v 122 (193)
T PF04356_consen 57 LGLRTLVDQLGGDSSPKDAELTRYALGLLH-LERKLSKNPDMLQQLGQRIEQAQRQAEHFDLLHENV 122 (193)
T ss_dssp HHHHHHHHHHH--SSCHHHHHHHHHHHHHH-HHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHH
T ss_pred HHHHHHHHHHCcCCCCcchHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 45677788888 56788877764 777777777788899999999999999988866543
No 78
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.92 E-value=84 Score=18.32 Aligned_cols=45 Identities=9% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 40 TLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 40 tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
.|.++..+++++..-=.++...|...+.....++..-..++.++.
T Consensus 15 ~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 15 ELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777777777777777777776654
No 79
>PRK09458 pspB phage shock protein B; Provisional
Probab=37.49 E-value=67 Score=21.15 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKARMA 81 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~Ri~ 81 (100)
|+.--.....+|.+.+..+.+|..+|..=+|
T Consensus 36 Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 36 LSQEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566778888999999999999976544
No 80
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=37.41 E-value=1.5e+02 Score=25.93 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEEL---VAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~---~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
...++ .-..+|+|.-|-+=.+...++.+|..+++=. .........+.++||++++.+..
T Consensus 323 ~~~l~-sp~~aL~~A~rEvl~~~d~ie~ml~~~~~~~~~~~~~~~~i~~~e~~vd~~~~~Ik~ 384 (533)
T COG1283 323 ETALD-SPVVALANAAREVLRLGDSIEQMLERLYEYIEGDAKKVKEIRKLEDAVDRLYEEIKL 384 (533)
T ss_pred HhhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 8899999999999999999999999887765 35556667777888888777654
No 81
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.39 E-value=77 Score=20.90 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
|.++...+..+..++..++.-+++|...+..
T Consensus 9 ~~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~ 39 (97)
T COG4842 9 PEEMRATAKDYAGSSGEIQALLQDLASEIAK 39 (97)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555444443
No 82
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=37.28 E-value=1.4e+02 Score=20.81 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhcCCc
Q psy1980 37 INNTLCNCLKQLGSV-VSVAGDIFKQLNEELVAVSEKTDALKARMARL--NAHTEEFDPK 93 (100)
Q Consensus 37 tn~tL~nilRQL~sL-s~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL--~~~v~~lD~k 93 (100)
..-..+.+++++.+= .+.|.+.+.-+...=.....+-..|..|+++| +.++-.|.+.
T Consensus 21 ~V~~P~~~f~~~~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~ 80 (109)
T PF11690_consen 21 QVLFPHAVFRHLPSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESH 80 (109)
T ss_pred cccCHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 444567777888887 58999999999988889999999999999999 8888877654
No 83
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=37.28 E-value=56 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 62 LNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 62 L~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
-..=+..+-.|+..+..|+.+++.++..|.
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566778888888888888888877653
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.21 E-value=1e+02 Score=23.91 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1980 39 NTLCNCLKQLGSVVSVAGDI---FKQLNEELVAVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 39 ~tL~nilRQL~sLs~~Aedi---F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v 87 (100)
..+.-+.+||.+|-.--.++ -+++..++..+-+|-..+...||++-.++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556677777775444333 45566788888888888888888765543
No 85
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.69 E-value=51 Score=22.02 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+..|..++..+......|+.++..|+..+..+.
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444444444555555555555555555443
No 86
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=36.39 E-value=2.1e+02 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.3
Q ss_pred HHHHHhhHHHHHHHH
Q psy1980 44 CLKQLGSVVSVAGDI 58 (100)
Q Consensus 44 ilRQL~sLs~~Aedi 58 (100)
++|-|..|.+.|++|
T Consensus 184 i~~Pl~~l~~~~~~i 198 (407)
T PRK09966 184 LVEALKNITDVVHDV 198 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777888888776
No 87
>PHA01794 hypothetical protein
Probab=35.76 E-value=88 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
-+.+|.||..|+..-.-=.+.++.=|+.++..+..|-.++
T Consensus 73 ~e~lF~eleqEm~~SGFF~~ki~kyien~EK~~~yl~~k~ 112 (134)
T PHA01794 73 TEGLFAELEKEMVDSGFFRAKIKKYIENMEKSARYLKAKD 112 (134)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3678999999998877777888888999988888776654
No 88
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=35.44 E-value=2.3e+02 Score=22.98 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARL 83 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL 83 (100)
+-+.+..+.+..++..+..+...|+.++..+
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 89 KQQQEQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 89
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.34 E-value=81 Score=21.27 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
+++|..++..+..+.+.+..+++.+.+
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 90
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.99 E-value=45 Score=17.30 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhh
Q psy1980 74 DALKARMARLNAHTE 88 (100)
Q Consensus 74 ~~L~~Ri~rL~~~v~ 88 (100)
+.|+.||..|+..++
T Consensus 4 ~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 4 NRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777776665
No 91
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=34.88 E-value=1.8e+02 Score=21.33 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
-+...|+++..++..+.+++..+++++..+.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (292)
T PF01544_consen 189 EDKEYLRDLLDRIERLLERAESLRERLESLQDLYQ 223 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455999999999999999999999988876554
No 92
>smart00427 H2B Histone H2B.
Probab=34.52 E-value=86 Score=21.18 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy1980 49 GSVVSVAGDIFKQLNEELVAVSE 71 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~~~ 71 (100)
+-+..+..|||+-|..|+..++.
T Consensus 26 ~imnSfvnDiferIa~EAs~L~~ 48 (89)
T smart00427 26 SIMNSFVNDIFERIAAEASKLAR 48 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44568899999999999998876
No 93
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=34.45 E-value=1e+02 Score=19.70 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 30 EGELDAVINNTLC------NCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMAR 82 (100)
Q Consensus 30 ~~eLe~Vtn~tL~------nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~r 82 (100)
..||+..-+.-.- ...|..|||++-|+ |..=-.+...+-.|...|+.+|.+
T Consensus 15 ~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENae--Y~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 15 QAELEHLKNVERPEIAEEIAEAREQGDLSENAE--YHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCcccchh--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566665554443 44577788887776 333344444455555555555543
No 94
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.36 E-value=83 Score=19.51 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
||.+++..+..-.++++.-+..+...+.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333
No 95
>KOG3366|consensus
Probab=34.13 E-value=75 Score=23.99 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 50 SVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 50 sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+.++.|+-|=.+=-.++.++..|...++.|+..|....++.|
T Consensus 13 dWa~lae~v~~~~~~~~s~fk~~~~~~~~~l~~lpe~~p~ID 54 (172)
T KOG3366|consen 13 DWAKLAERVPPNQAAEFSSFKSRNDEAVSRLLTLPEQPPTID 54 (172)
T ss_pred cHHHHHHHcCHHHHHHHHHHHHhhHHHHHHHHhcccCCCccC
Confidence 567888888899999999999999999999999988888777
No 96
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.74 E-value=1.1e+02 Score=20.22 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 33 LDAVINNTLCNCLKQLGSVVSVAGDIFKQLN-------EELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 33 Le~Vtn~tL~nilRQL~sLs~~AediF~eL~-------~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
-+.+....+...+|++|==-+-..+++.... .-...+..+...|+.++..|+.....+|
T Consensus 41 ~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 41 EEDLEWLEFIKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777622233334443221 1223344444445555555544444443
No 97
>KOG3684|consensus
Probab=33.67 E-value=90 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+.+.|+-+..+.+|-..|..||+-|+.++..+
T Consensus 429 ~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l 460 (489)
T KOG3684|consen 429 QNDMYDLLQELHSRQEELEKQIDTLESKLEAL 460 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677777777777777776654
No 98
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=33.50 E-value=1.5e+02 Score=22.16 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhH-HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 39 NTLCNCLKQLGSV-VSVAGDIFKQL-------NEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 39 ~tL~nilRQL~sL-s~~AediF~eL-------~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
-+|++++++||++ +...+.+=... ..+...+..+...++.++..++.-+.
T Consensus 12 k~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~ 69 (229)
T PF10334_consen 12 KTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLA 69 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888887 33333332222 22344566777777777777766554
No 99
>PF13990 YjcZ: YjcZ-like protein
Probab=33.11 E-value=1.6e+02 Score=23.74 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1980 37 INNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 37 tn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v 87 (100)
+|-.|..+.-+.+.++.+..++=..|..=...++.|...|+.++-+..-.+
T Consensus 74 vnq~L~~l~~~~~~~a~~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~ 124 (270)
T PF13990_consen 74 VNQRLTELQQDVARLAQYSPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQ 124 (270)
T ss_pred HHHHHHHHHHhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444455555555566666666666666677777777777766655443
No 100
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.08 E-value=1.9e+02 Score=24.21 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
..++..+...+..+...|++++..|+.++..+-+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566677777778888888888888888877754
No 101
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.89 E-value=1.1e+02 Score=26.48 Aligned_cols=39 Identities=18% Similarity=0.456 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcee
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLV 95 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~ 95 (100)
++..+...++..+.++...|.+++.+|+++...+....+
T Consensus 86 e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 86 ELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888899999999999999888877654433
No 102
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=32.66 E-value=1e+02 Score=20.77 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcee
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLV 95 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~ 95 (100)
.-|.+=+.|-..+..++.....+...|...+..+.++..
T Consensus 15 ~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ 53 (101)
T PF07303_consen 15 AEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQ 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 468899999999999999999999999999988887543
No 103
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=31.79 E-value=69 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKT 73 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~ 73 (100)
|...+|++|.++..++..++...
T Consensus 36 L~~~~E~~~~~il~~A~~~a~~~ 58 (75)
T PF00125_consen 36 LQSVLEYLLVEILEEAGNLARHA 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhHHHHHHhhc
Confidence 55677888888888877776643
No 104
>PRK02119 hypothetical protein; Provisional
Probab=31.72 E-value=1.4e+02 Score=19.00 Aligned_cols=49 Identities=12% Similarity=0.360 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
|-.|=.-..|-++...+|...+..-..-...|+..+..|..++..+.+.
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4445555678888888888888888877888888888887777766544
No 105
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=31.55 E-value=1.6e+02 Score=22.89 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.+.+.+=...+|-=||+|...+.....++..|..+=|.|...+..
T Consensus 13 ~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~ 57 (219)
T PF06730_consen 13 TKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQD 57 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 345555566788889999999999999999999999988777654
No 106
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=31.35 E-value=2e+02 Score=20.65 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 42 CNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 42 ~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
..=+--.+.+.+.-+.--..+-.|...++.|-.+.+.|+++|..-+.
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555567778888889999999999998887664
No 107
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=31.33 E-value=1.1e+02 Score=21.72 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=34.2
Q ss_pred cchHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 30 EGELDAVINNTL------CNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 30 ~~eLe~Vtn~tL------~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
..||+..-+.-. ..-.|.+|||++-|+-- +=-.+...+-.|...|..++.+.+.-
T Consensus 11 ~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~--aak~~~~~~e~ri~~L~~~L~~a~iv 71 (151)
T TIGR01462 11 KEELEYLKTVKRPEISEEIAEAREHGDLSENAEYH--AAKEEQGFNEGRIAELEDLLANAQVI 71 (151)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHCCChhhccchH--HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 356665544321 23356778888776533 33455566777888888888877763
No 108
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=31.21 E-value=1e+02 Score=17.39 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 35 AVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALK 77 (100)
Q Consensus 35 ~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~ 77 (100)
.++-.++..++==+..+..+-.++..++..|...+-.+++.+=
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W 50 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAW 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777788888999999999999999988887753
No 109
>PTZ00463 histone H2B; Provisional
Probab=31.19 E-value=98 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy1980 49 GSVVSVAGDIFKQLNEELVAVSE 71 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~~~ 71 (100)
+=+..+..|||+-|..|+..++.
T Consensus 53 ~ImnSfvnDifErIA~EAs~La~ 75 (117)
T PTZ00463 53 NIMNSFLVDTFEKIATEASRLCK 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668899999999999998875
No 110
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.71 E-value=1.7e+02 Score=20.45 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+....|..+.....+|...|+.+|+.+...+.
T Consensus 44 ~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 44 NALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888888887766554
No 111
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.65 E-value=1.3e+02 Score=18.43 Aligned_cols=48 Identities=10% Similarity=0.318 Sum_probs=32.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhc
Q psy1980 43 NCLKQLGSVVSVAGDIFKQLNEELVAVS-EKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 43 nilRQL~sLs~~AediF~eL~~e~~~~~-~R~~~L~~Ri~rL~~~v~~l 90 (100)
..|+.+-..-.-|+++...+.-|+..+. .--..++.||......+..+
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667788999999999888774 33356666666666555443
No 112
>PRK00587 hypothetical protein; Provisional
Probab=30.54 E-value=81 Score=21.45 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeeeeC
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTVRF 99 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~V~~ 99 (100)
|++|..++..+..+...+|+.+...+..-+. ...++|.+
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~v~g~~--gGlVkV~~ 41 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKEFDFDY--KKYILIKI 41 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEc--CCeEEEEE
Confidence 6788888888888888888888888766553 44555543
No 113
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=30.52 E-value=1.1e+02 Score=25.12 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 42 CNCLKQLGSVVSVAGD-----------IFKQLNEELVAVSEKTDALKARMARL 83 (100)
Q Consensus 42 ~nilRQL~sLs~~Aed-----------iF~eL~~e~~~~~~R~~~L~~Ri~rL 83 (100)
.|++||||-=.+.+.+ .+.+....+.+|++=.+.+|-|+.|.
T Consensus 237 FntlRQlGAnfEL~a~~l~WL~~~g~~~~~~aa~a~~~ias~Ak~~QFrLARA 289 (319)
T PF08893_consen 237 FNTLRQLGANFELLASYLRWLDAQGFSGPAEAAEACRTIASEAKVVQFRLARA 289 (319)
T ss_pred hhhHHhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999975554444 44456677788888888888888876
No 114
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=30.51 E-value=1.3e+02 Score=22.91 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
-.++|..|+.|-.+--| .++|.+++..+-.+.+.|.++..+.+.+
T Consensus 186 A~~ll~~l~~l~~~~id-~~~L~e~Ae~ie~~~~el~e~~~~~~~~ 230 (238)
T TIGR00161 186 AASLVEVLNKMLNTNVD-PEPLLKEAEAIESRLKKLAEQVQGMMSK 230 (238)
T ss_pred HHHHHHHHHHHhCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44666677777666666 6788888888888888888887776555
No 115
>PRK11637 AmiB activator; Provisional
Probab=30.35 E-value=2.8e+02 Score=22.67 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=3.9
Q ss_pred ccccccce
Q psy1980 5 VRTVQPKF 12 (100)
Q Consensus 5 kR~VeP~~ 12 (100)
.|.|.|+.
T Consensus 10 ~~~~~~~~ 17 (428)
T PRK11637 10 TRAVKPRR 17 (428)
T ss_pred cccccchh
Confidence 35555543
No 116
>PHA02675 ORF104 fusion protein; Provisional
Probab=30.34 E-value=1.8e+02 Score=19.78 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
++|..+.+-+.....|...|..-.+-|...+-.|-
T Consensus 44 k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~ 78 (90)
T PHA02675 44 DSYKTITDCCRETGARLDRLERHLETLREALLKLN 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777766666666554443
No 117
>KOG0300|consensus
Probab=30.20 E-value=81 Score=26.76 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 56 GDIFKQLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 56 ediF~eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
-.+||.+..|..+++---..|++|++-++
T Consensus 49 ~~LFgqIErEFe~LY~EN~aL~~~~di~~ 77 (481)
T KOG0300|consen 49 YQLFGQIEREFETLYAENCALQERADIVQ 77 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 36799999999999999999999988776
No 118
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.14 E-value=2.3e+02 Score=25.32 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 35 AVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 35 ~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.+.-...-.+..++.+++..-.++-.++..|+.....+.|.|-..|..|..++...
T Consensus 130 q~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 130 QLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344556677788888888889999999999999999999999999999888754
No 119
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.99 E-value=93 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 66 LVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 66 ~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+..+.+|..-||.-|.||++.....+..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~s 54 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKAS 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3457789999999999999888765543
No 120
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=29.63 E-value=17 Score=25.51 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhc
Q psy1980 37 INNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDA---LKARMARLNAHTEEF 90 (100)
Q Consensus 37 tn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~---L~~Ri~rL~~~v~~l 90 (100)
+|.++..+=+.+.+|...+.+||..| ..+..+... |...|.++...+.+-
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~L~~kl----~~l~~~~~~~~~ls~nI~~IrelI~qA 102 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPDLLDKL----KPLENLSENNSNLSRNISRIRELIAQA 102 (138)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 44555555556666666666666654 333334444 777888777777654
No 121
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=29.62 E-value=1.3e+02 Score=17.93 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 37 INNTLCNCLKQLGSVVSVAGDIFKQLNEE---LVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 37 tn~tL~nilRQL~sLs~~AediF~eL~~e---~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
++.+|-+..+.+.+.-..|.++..+|..+ +..+..+.......++.....+.
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~ 60 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLK 60 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45678888888888888888888888776 44445555555555555544443
No 122
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=29.42 E-value=2.2e+02 Score=20.58 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
--|+++.+...++..+......++.|+..++.++...=.|.
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kv 83 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKV 83 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 45889999999999999999999999999999887544443
No 123
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.25 E-value=2.1e+02 Score=23.47 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=39.1
Q ss_pred HHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 41 LCNCLKQLGSVV-------SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 41 L~nilRQL~sLs-------~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
+...+|+.++.+ ..|..-+.+|+..+..+-.++..=+.=|..+...+.+||--+
T Consensus 41 I~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AK 101 (383)
T PF04100_consen 41 IKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAK 101 (383)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554332 356677788888888888888888888888888888888543
No 124
>KOG2180|consensus
Probab=29.19 E-value=1.3e+02 Score=27.62 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
.+|.+-..+|+.++..+-+|+.+-+.=|..+...+.+||--+
T Consensus 75 ~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AK 116 (793)
T KOG2180|consen 75 ADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAK 116 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 468888999999999999999999999999999999999654
No 125
>KOG3684|consensus
Probab=29.12 E-value=2e+02 Score=25.01 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=39.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 42 CNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 42 ~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+|.+-+++-+..--.|+.+++++-=..+-.|...|..+++.|++.+..+
T Consensus 419 ~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 419 ANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666666667778888888888889999999999999999887654
No 126
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=29.06 E-value=1.8e+02 Score=21.14 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
..++|..--|-.++..+..|...|..+|..|.....
T Consensus 96 ~~~ed~L~~llaqLealsqqL~~ls~qv~~L~~~~~ 131 (135)
T PHA03385 96 SLAEDKLLVLLAQLEALSQQLQELSQQVAQLREQTQ 131 (135)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 456888888888888888888888888877765443
No 127
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=29.00 E-value=2e+02 Score=21.76 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=31.2
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 50 SVVSVAGDIFK---QLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 50 sLs~~AediF~---eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
++..|+.+||. .|..++......+..|+.+-.+|+..-.+
T Consensus 153 ~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~ 195 (206)
T PF14988_consen 153 SLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQ 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665 58999999999999999999998876544
No 128
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.97 E-value=81 Score=20.84 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
.++..++..+...-+.|-+++++.+.+..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 34444444444444444444444444433
No 129
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=1e+02 Score=21.60 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy1980 66 LVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 66 ~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
+..+.+|+..|.++|..|+.+
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 85 MDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555443
No 130
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=28.71 E-value=99 Score=24.25 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy1980 39 NTLCNCLKQLGSVVSVAGDIFKQLNEEL 66 (100)
Q Consensus 39 ~tL~nilRQL~sLs~~AediF~eL~~e~ 66 (100)
..|.|+||+|.+ .....+|..||..-+
T Consensus 50 IHlrNVLrrlls-~qcs~~ii~ell~lm 76 (225)
T PHA03074 50 IHLRNVLRRLLS-NQCSGEIISELLELM 76 (225)
T ss_pred eeHHHHHHHHHH-hHhhHHHHHHHHHHH
Confidence 358999999999 556666666665443
No 131
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.59 E-value=2.8e+02 Score=23.03 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
...+..++.+++..-.++..++..++.....+.|.|-.+|..|..++...
T Consensus 141 a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~ 190 (431)
T PRK06799 141 TGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQA 190 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777778888888888888888899999999999998888653
No 132
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.30 E-value=2.7e+02 Score=23.35 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 34 DAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 34 e~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
..+.-...-++..++.+++..-.++-.++..++.......|.|-.+|..|..++....
T Consensus 124 R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~ 181 (483)
T PRK07521 124 AQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVSGT 181 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445566777888888888888889999999999999999999999998886543
No 133
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.29 E-value=2.6e+02 Score=24.66 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 37 INNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 37 tn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.-..--++..++.+++..-.++-.++..++.....+.|.|-..|..|..++...
T Consensus 135 vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~~ 188 (626)
T PRK08871 135 VLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMRT 188 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445667777888888888888999999999999999999999999888653
No 134
>KOG4571|consensus
Probab=28.01 E-value=93 Score=25.36 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.++|..|+..+..|-..|+.|++.++..+..|
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999998887654
No 135
>PLN03217 transcription factor ATBS1; Provisional
Probab=27.94 E-value=1.6e+02 Score=20.14 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKA 78 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~ 78 (100)
+-+-+|.-...|+.|+..+++|...|-.
T Consensus 50 vLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 50 VLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777788888888887777654
No 136
>PRK00295 hypothetical protein; Provisional
Probab=27.76 E-value=1.6e+02 Score=18.43 Aligned_cols=47 Identities=28% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
|-.|=.-..|.++.-.+|...+..-..-...|+..+..|..++..++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444556788899999988888888888888888888877777665
No 137
>PLN00158 histone H2B; Provisional
Probab=27.58 E-value=1.2e+02 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy1980 49 GSVVSVAGDIFKQLNEELVAVSE 71 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~~~ 71 (100)
+-+..+..|||+-|..|+..++.
T Consensus 52 ~ImnSfvnDiferIA~EAs~La~ 74 (116)
T PLN00158 52 SIMNSFINDIFEKIATEAGKLAR 74 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44668899999999999998865
No 138
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=27.34 E-value=1.3e+02 Score=26.20 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 34 DAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEK 72 (100)
Q Consensus 34 e~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R 72 (100)
..--|.+..-.-+-.+++...+.++|++||.|+......
T Consensus 108 ~~se~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g 146 (557)
T PF01153_consen 108 RQSENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLG 146 (557)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333444445555567777777777888888887765543
No 139
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.16 E-value=1.5e+02 Score=17.73 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+...=.++.++...|..|...-..+...+..+...|..|-+.|...+.
T Consensus 50 i~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 50 IESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666777777554455566666666666666666665544
No 140
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=26.87 E-value=1.8e+02 Score=18.82 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 32 ELDAVINNTLCNCLKQLGSVVSVAGDIFKQL-NEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 32 eLe~Vtn~tL~nilRQL~sLs~~AediF~eL-~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
..+.|...-..-.+|++|==-+-+..++... ..-...+..+...|+.++.+|+.....||
T Consensus 40 ~~~di~~l~~i~~lr~~g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 100 (103)
T cd01106 40 TEEDLERLQQILFLKELGFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTID 100 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556777763234455566655 33345566777777777777777666655
No 141
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=26.82 E-value=1.6e+02 Score=22.53 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHHHHHHh-----hHHHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh
Q psy1980 30 EGELDAVINNTLCNCLKQLG-----SVVSVAG-DIFKQLNEELVA------VSEKTDALKARMARLNAHT 87 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~-----sLs~~Ae-diF~eL~~e~~~------~~~R~~~L~~Ri~rL~~~v 87 (100)
.+||....|.+|...+...- ..+.||. -|-+++...+.. +..+...+..+|.+....+
T Consensus 67 ~~DLiQeG~iGLi~AierFDp~~G~~FsTYA~~~Irg~I~~~lr~~~~~ir~Pr~~~~~~~~i~~~~~~l 136 (264)
T PRK07122 67 RDDLVQVARVGLVNAVNRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGRATAEL 136 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999884 4566654 367777776654 3344445555555444433
No 142
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.61 E-value=1.8e+02 Score=18.49 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1980 40 TLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 40 tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v 87 (100)
-|+-.++.|+...+..+..-+.+..|+..+..-++.+-.....+.+.|
T Consensus 16 ~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 16 FLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666677777777766666666666655543
No 143
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=26.56 E-value=2.2e+02 Score=19.70 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=19.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELV----AVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~----~~~~R~~~L~~Ri~rL~~~v 87 (100)
-+.+..++..+.++|..+..=+. ..+.+.......|++++..+
T Consensus 11 ~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~~~i 57 (212)
T TIGR02135 11 REELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKI 57 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHHHHH
Confidence 33344444444444444333222 34455555555555555444
No 144
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.49 E-value=1e+02 Score=18.37 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 68 AVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 68 ~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
....+..+++.++.+++.+++++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677777777777777654
No 145
>PF11487 RestrictionSfiI: Type II restriction enzyme SfiI; InterPro: IPR021580 SfiI is a restriction enzyme that can cleave two DNA sites simultaneously to leave 3-base 3' overhangs. It acts as a homo-tetramer and recognises a specific eight base-paid palindromic DNA sequence. After binding two copies of its recognition sequence, SfiI becomes activated leading to cleavage of all four DNA strands. The structure of SfiI consists of a central twisted beta-sheet surrounded by alpha-helices. ; PDB: 2F03_A 2EZV_A.
Probab=26.48 E-value=1.5e+02 Score=23.55 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQL 62 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL 62 (100)
.++||.|--.||--+.+-+-+-.+-|-+||.+=
T Consensus 10 ld~lEeiEk~tLrlvvqAi~dY~~~A~~IF~~e 42 (262)
T PF11487_consen 10 LDRLEEIEKSTLRLVVQAIYDYRKEALEIFEEE 42 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999863
No 146
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=26.43 E-value=1.3e+02 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 64 EELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 64 ~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
.-+..+.+|..++..|+.++|.-||.-+.
T Consensus 84 ~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f 112 (121)
T TIGR02978 84 QALREVKREFRDLERRLRNMERYVTSDTF 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34556677788888889999988886544
No 147
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=26.34 E-value=2.1e+02 Score=20.71 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
=.-..++.-+.+++..+..|...|+.|.+-.+.++...+...
T Consensus 64 P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~~ 105 (153)
T PF08287_consen 64 PQINHLLDKAEKHLEKLQRREETLKAKCELQQGRLSNYESTD 105 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence 345567788888888888899999998887777776655544
No 148
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.25 E-value=1e+02 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
..|.++...+..+...|+..++.|+.++.
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544444443
No 149
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=26.22 E-value=1.4e+02 Score=17.14 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 56 GDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 56 ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
+.||=|=-.-+..++.=+..|..||+.++.
T Consensus 6 ~rifmEnV~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 6 ERIFMENVGAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 356666666667777778888899988764
No 150
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=26.15 E-value=3.3e+02 Score=21.46 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhh------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 39 NTLCNCLKQLGS------VVSVAGDI---FKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 39 ~tL~nilRQL~s------Ls~~Aedi---F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.||..+|+=+.. +.+.|++| +++|+.++..+.++...+...++++.....+
T Consensus 213 stL~a~L~~v~~~w~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~ 272 (304)
T PF02646_consen 213 STLMALLRTVAYLWRQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNK 272 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 34566555 5677888888888888888888777665543
No 151
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.82 E-value=1.3e+02 Score=20.35 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
..++..|...+..|...|+..|.+|+..
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3567888888899999999999998774
No 152
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=25.77 E-value=1.2e+02 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHH
Q psy1980 30 EGELDAVINNTLCNCLKQL--------GSVVSVAGDIFKQ 61 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL--------~sLs~~AediF~e 61 (100)
.+|||.--...+.++.+|| ......|+++|++
T Consensus 5 ~dele~~~~~~f~~~~~~l~~~~~~~~~~f~~Va~~lf~d 44 (100)
T smart00337 5 GDELNKRYERAFSSFSAQLHVTPGTAIELFGEVATELFSD 44 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHcc
Confidence 3677766666778888886 3334455555543
No 153
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.58 E-value=2.9e+02 Score=20.62 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 38 NNTLCNCLKQLGSVVSV------AGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~------AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
..||..+|+.|=.+-.. ...=-..|..|+..+..+...|+..+..|+.+..
T Consensus 79 ~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 79 SLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777666555432 2223344556666666666666666666555443
No 154
>PHA01750 hypothetical protein
Probab=25.41 E-value=2e+02 Score=18.85 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 64 EELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 64 ~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.|+.++---...++-|+|.++++|..+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444455555555555555443
No 155
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.31 E-value=1.6e+02 Score=18.62 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
|.++..++..+......|...+.+++.....
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~e 37 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEE 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887766666555443
No 156
>PRK04406 hypothetical protein; Provisional
Probab=25.28 E-value=1.9e+02 Score=18.51 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=42.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+..=|-.|=.-..|-++.-.+|...+..-..-...|+..+..|..++..+++.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34445566666789999999999999888888889999999888888777643
No 157
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription]
Probab=25.03 E-value=1.7e+02 Score=22.82 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=52.5
Q ss_pred CCCcccccccceeecCCCCCCcCCCCCCccchHHHHHHHHHHHHHHHH-----hhHHHHHH-HHHHHHHHHHHHH-----
Q psy1980 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQL-----GSVVSVAG-DIFKQLNEELVAV----- 69 (100)
Q Consensus 1 MPlvkR~VeP~~l~r~~~l~~~~~~~~~~~~eLe~Vtn~tL~nilRQL-----~sLs~~Ae-diF~eL~~e~~~~----- 69 (100)
||||++.+. ++.-|.+. + .++|-.+-..+|-+.+.-. .+.+.||. -|=|++...+-.-
T Consensus 33 lpLV~~ia~-k~~~r~~~---~-------~dDLiqiG~iGLi~Aieryd~~kg~kF~tyA~~~I~Gei~d~LR~~~~v~v 101 (247)
T COG1191 33 LPLVKSIAR-KFENRGPS---E-------YDDLIQIGMIGLIKAIERYDPSKGTKFSTYAVRRIRGEILDYLRKNDSVKV 101 (247)
T ss_pred HHHHHHHHH-HHHhcCCC---c-------hhHHHHHHHHHHHHHHHHcCcccCcchHHHHHHHHHHHHHHHHHhCCCccC
Confidence 689998887 66666621 1 5899999999999998876 45666775 3556666665543
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1980 70 SEKTDALKARMARLNAHTE 88 (100)
Q Consensus 70 ~~R~~~L~~Ri~rL~~~v~ 88 (100)
..+...+..|+....+.+.
T Consensus 102 pR~~~~~~~~i~~~~~~l~ 120 (247)
T COG1191 102 PRSLRELGRRIEEAIDELE 120 (247)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555
No 158
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=24.95 E-value=3.2e+02 Score=23.94 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 39 NTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 39 ~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
...-++..++.+++..-.++-.++..++.....+.|.|-..|..|..++...
T Consensus 134 ~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~ 185 (624)
T PRK12714 134 DSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSS 185 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556677777777888888888888899999999999999998888653
No 159
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=24.94 E-value=85 Score=22.54 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=36.5
Q ss_pred cchHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 30 EGELDAVINN------TLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 30 ~~eLe~Vtn~------tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
..||+.+.+. --..-.|.+|+|+.-|+..+. -.+...+-.|...|..++.+.+.
T Consensus 10 ~~el~~l~~~~rp~i~~~i~~ar~~gdl~enaey~aa--k~~q~~~e~ri~~le~~l~~a~v 69 (151)
T COG0782 10 KEELEYLKPVERPEIVEEIADARELGDLSENAEYRAA--KEEQAFIERRIRLLEELLRNAQV 69 (151)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHccchhhChhhHHH--HHHhcccHHHHHHHHHHhcCcee
Confidence 3556655543 234556889999999999888 55566666777777777665543
No 160
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.90 E-value=1.6e+02 Score=20.18 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
+|..|=..+.---..|+.|+..++.
T Consensus 33 ~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 33 ELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344433333344444555554444
No 161
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=24.11 E-value=78 Score=23.91 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q psy1980 41 LCNCLKQLGSVVSVAGDIFK 60 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~ 60 (100)
|++++.||..|..-.++|+.
T Consensus 18 ~~gl~~~L~~lie~Laelee 37 (177)
T PF05455_consen 18 LGGLFDGLRRLIETLAELEE 37 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 68999999999998888873
No 162
>PRK04325 hypothetical protein; Provisional
Probab=24.09 E-value=2e+02 Score=18.28 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=38.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
|-.|=.-..|-++.-.+|...+..-..-...|+..+..|..++..+.+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5556666788899999999888888888888888888888888776643
No 163
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.07 E-value=1.6e+02 Score=17.17 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
..+|..++..+......|+..|..|+.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666667777777777777776653
No 164
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=24.02 E-value=1.3e+02 Score=20.42 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=18.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 44 CLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMAR 82 (100)
Q Consensus 44 ilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~r 82 (100)
.-.++..+...|..+......+...+..+...|..|-+.
T Consensus 52 ~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~ 90 (213)
T cd00176 52 HEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEE 90 (213)
T ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 344555566666666554333333444444444444333
No 165
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=23.78 E-value=1.8e+02 Score=19.89 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy1980 40 TLCNCLKQLGSVVSVAGDIFKQLNEELV 67 (100)
Q Consensus 40 tL~nilRQL~sLs~~AediF~eL~~e~~ 67 (100)
.|..|=+++.+|-++|...|++|.++-.
T Consensus 7 ~L~~Idk~I~~lL~~A~~ai~~Ls~~~~ 34 (117)
T PF10280_consen 7 QLNEIDKKIVSLLQHAGQAIQELSNPKS 34 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3677778889999999999999987643
No 166
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.76 E-value=88 Score=24.18 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 29 KEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALK 77 (100)
Q Consensus 29 ~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~ 77 (100)
.-++|-.+|+..|-.+++ .+.+.-|+-|=+.+++|.-|+-|.++|.
T Consensus 88 ~Y~DLT~~Ar~eLpyvve---~iV~~~E~rFV~fFN~A~PIt~RLH~LE 133 (202)
T COG1491 88 RYEDLTDTARSELPYVVE---KIVKENEDRFVKFFNEAEPITLRLHQLE 133 (202)
T ss_pred cHhhccHHHHhhhHHHHH---HHHHhhhhHHHHHhcccCcchHHHHHHH
Confidence 346888888888888876 5789999999999999999999999885
No 167
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.59 E-value=1.2e+02 Score=24.15 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.+..|-..|..+...+.+....|+.+++.++..+...
T Consensus 29 l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~ 65 (308)
T PF11382_consen 29 LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAA 65 (308)
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666665543
No 168
>PRK11820 hypothetical protein; Provisional
Probab=23.51 E-value=85 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALK 77 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~ 77 (100)
|-=.=|.+|++.|+++++++++.+.
T Consensus 241 rkLDFL~QEm~RE~NTigSKs~~~~ 265 (288)
T PRK11820 241 RKLDFLMQELNREANTLGSKSNDAE 265 (288)
T ss_pred cchhHHHHHHhHHHHHHHHccCcHH
Confidence 3445589999999999999998843
No 169
>PRK14621 hypothetical protein; Provisional
Probab=23.16 E-value=1.3e+02 Score=20.74 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
|.++..++..+..+...+|.++...+..-+
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~~v~g~ 35 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKLVAHGE 35 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccEEEEE
Confidence 778888888888888888888877655433
No 170
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.05 E-value=3.7e+02 Score=23.79 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 36 VINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 36 Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+.-...-++..++.+++..-.++-.++..++.....+.|.|-..|..|..++...
T Consensus 132 ~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 132 TMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455667777778888888888888899999999999999999998888764
No 171
>smart00304 HAMP HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain.
Probab=23.03 E-value=65 Score=15.44 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1980 65 ELVAVSEKTDALKARMAR 82 (100)
Q Consensus 65 e~~~~~~R~~~L~~Ri~r 82 (100)
|+..++...+.+..++..
T Consensus 33 e~~~l~~~~~~~~~~~~~ 50 (53)
T smart00304 33 EIGELARAFNEMADRLEE 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 172
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.00 E-value=3.9e+02 Score=23.09 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhH------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1980 36 VINNTLCNCLKQLGSV------VSVAGDIF---KQLNEELVAVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 36 Vtn~tL~nilRQL~sL------s~~AediF---~eL~~e~~~~~~R~~~L~~Ri~rL~~~v 87 (100)
|+=+||..+||-++.+ ++.|.+|+ ++||+.+..|......+-.++++.....
T Consensus 343 vsPTTLla~LrtI~~~Wr~e~q~~na~eIa~~a~~Lydkl~~f~~~~~klG~~L~~a~~~y 403 (475)
T PRK10361 343 VSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNY 403 (475)
T ss_pred eChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777644 33444443 4566666666666666666666655443
No 173
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.82 E-value=1.8e+02 Score=23.15 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.0
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 42 CNCLKQLGS-VVSVAGDIFKQLNEELVAVSEKTDAL 76 (100)
Q Consensus 42 ~nilRQL~s-Ls~~AediF~eL~~e~~~~~~R~~~L 76 (100)
....|||+| +...++.+|.-|..|+..=..|...+
T Consensus 119 lk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~ 154 (267)
T PF10234_consen 119 LKAARQLASEITQRGASLYDLLGKEVELREERQRAL 154 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHH
Confidence 356889987 68999999999999987666665443
No 174
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.77 E-value=1.3e+02 Score=26.16 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCC
Q psy1980 72 KTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 72 R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
+...|+.+|+.|++++..++-
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 444555555555555444433
No 175
>KOG4796|consensus
Probab=22.62 E-value=2e+02 Score=25.72 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=41.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCce
Q psy1980 27 LVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE-EFDPKL 94 (100)
Q Consensus 27 ~~~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~-~lD~k~ 94 (100)
+.++-+|++++-.|+-- ..-=.+-|+.=|.|-..+..|+...+.|...|++.+. .+++..
T Consensus 486 ~tPdYllqY~aI~S~eq--------r~~Yk~dF~~eY~EYreLharve~vs~rF~~Lea~L~srls~gS 546 (604)
T KOG4796|consen 486 PTPDYLLQYGAISSLEQ--------RQRYKKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSRLSPGS 546 (604)
T ss_pred CCcchhhhccccccHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 34567777766555432 1122456777788888888888888888888888888 777654
No 176
>KOG1655|consensus
Probab=22.53 E-value=1.2e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.535 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 62 LNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 62 L~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
|..-...+..|+.++..||.+|.+.+.++
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~ 45 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKY 45 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44445678889999999999998887765
No 177
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=22.50 E-value=2.3e+02 Score=19.89 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1980 59 FKQLNEELVAVSEKTDAL 76 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L 76 (100)
|-++.+.+..+.+|+-.|
T Consensus 94 ~p~~~~~l~~I~~r~vDL 111 (130)
T PF11074_consen 94 FPDYAEKLNSIIERTVDL 111 (130)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 178
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=22.49 E-value=3.7e+02 Score=22.23 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTD-ALKARMARLNAHT 87 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~-~L~~Ri~rL~~~v 87 (100)
|...++-+-|+-+=..+|.+.|.++.+.+..+....+ .++..+++|+..+
T Consensus 84 N~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~ 134 (406)
T PF04906_consen 84 NSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIF 134 (406)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666778888888999999999999998888875 4677788888765
No 179
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=22.45 E-value=2.8e+02 Score=19.28 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
..+..++.....|...+-+.|.++-..|..+|+.
T Consensus 46 ~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~g 79 (120)
T PF09969_consen 46 NGLEAELEELEARLRELIDEIEELGVEVKDLDPG 79 (120)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcce
Confidence 3455566677777777777777777777777654
No 180
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.33 E-value=5.4e+02 Score=22.59 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 35 AVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 35 ~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
.+.-...-.+..++.+++..-.++-.++..++.....+.|.|-..|..|..++....
T Consensus 142 ~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~ 198 (627)
T PRK06665 142 QVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQ 198 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445566777788888888888888899999999999999999999998887643
No 181
>PRK00153 hypothetical protein; Validated
Probab=22.28 E-value=1e+02 Score=20.50 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
|.++.+++..+..+...+|.++...+...+.-
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~s~ 36 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEGEAG 36 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEEC
Confidence 67888888888888888888888777655443
No 182
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.86 E-value=4.3e+02 Score=22.48 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
-...-++..++..++..-.++-.++..++.....+.|.|-..|..|..++....
T Consensus 134 l~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~ 187 (547)
T PRK08147 134 IGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRLT 187 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456677777777788888888888888889999999999999998887643
No 183
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.85 E-value=3.8e+02 Score=20.73 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 46 KQLGSVVSVAGDIFKQL------NEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 46 RQL~sLs~~AediF~eL------~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
|++-++..|+.+-..|= ..|+..|++=+..|+.=+++|+.++..|..|
T Consensus 148 ~~~~~~q~~~Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 148 HGLKQLQRNLAEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666665555544432 2456666666666666666666666665544
No 184
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.83 E-value=3.9e+02 Score=21.85 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLN---EELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~---~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+.-+++||++-+.....|=.||. .|...-.+=+.+|..+|..++.++.++
T Consensus 201 v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 201 VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888887777776664 344445555666666666666666544
No 185
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.54 E-value=1.4e+02 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q psy1980 43 NCLKQLGSVVSVAGDIFKQLN 63 (100)
Q Consensus 43 nilRQL~sLs~~AediF~eL~ 63 (100)
.|-|||++|+.--.++|-.+.
T Consensus 32 siS~kLS~l~sr~DeLFl~iQ 52 (87)
T PF07436_consen 32 SISRKLSSLSSRFDELFLKIQ 52 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456899998876666665544
No 186
>PRK15396 murein lipoprotein; Provisional
Probab=21.44 E-value=2.5e+02 Score=18.38 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 65 ELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 65 e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
++..+..-+..|+..++++...+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~ 49 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVN 49 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444
No 187
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=21.27 E-value=1.6e+02 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 66 LVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 66 ~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
+..+..|.+++..||.++|.-||.-+.
T Consensus 83 l~~~~~~~~~~e~Rlr~mE~yVTS~~f 109 (118)
T PRK10697 83 LDEVDRELAAGEQRLREMERYVTSDTF 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 556667778888888888888875443
No 188
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=21.24 E-value=4.2e+02 Score=20.98 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy1980 53 SVAGDIFKQL----NEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 53 ~~AediF~eL----~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
++.+++++.| ..|+..++.|...|+.|+.+|.
T Consensus 257 ~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 257 EVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555554 4788899999999999988875
No 189
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=21.13 E-value=3e+02 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
..|.+.|.+|...+..-..=-+.|..++.++..++.+
T Consensus 251 ~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~ 287 (296)
T PF13949_consen 251 EAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVED 287 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888876666667777777777777654
No 190
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.08 E-value=3.8e+02 Score=22.84 Aligned_cols=50 Identities=14% Similarity=0.339 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhcC
Q psy1980 42 CNCLKQLGSVVSVAGDIFKQLNEELVAVS---EKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 42 ~nilRQL~sLs~~AediF~eL~~e~~~~~---~R~~~L~~Ri~rL~~~v~~lD 91 (100)
..+.-+|.+.....+|+-.+|..-+..+. .|...++.|+..++.......
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg 321 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYG 321 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333344444444444333322 455666666666665444433
No 191
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.82 E-value=1.8e+02 Score=21.87 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
.|..++..+..|...++.|++..+..
T Consensus 197 ~l~~~~~~~~~~i~~~~~rl~~~~~~ 222 (239)
T PF07195_consen 197 SLNSQIKSLDKQIEDLEERLESKEER 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444433
No 192
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=20.76 E-value=1.8e+02 Score=16.44 Aligned_cols=8 Identities=25% Similarity=0.048 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy1980 55 AGDIFKQL 62 (100)
Q Consensus 55 AediF~eL 62 (100)
+-+|..++
T Consensus 28 ~~~i~~~v 35 (66)
T smart00397 28 FLDMGTEL 35 (66)
T ss_pred HHHHHHHH
Confidence 33333333
No 193
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=20.73 E-value=3.7e+02 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQ 61 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~e 61 (100)
+.+|++.+.++|+...-..+++++
T Consensus 65 ~~~Ls~al~~la~~~~ki~~~~~~ 88 (224)
T cd07623 65 HTSLSRALSQLAEVEEKIEQLHGE 88 (224)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999887666666555
No 194
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.72 E-value=1.9e+02 Score=19.06 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
=|.++...+.....-...+++++.||+...++-|-+
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqk 46 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQK 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777778888888888877766543
No 195
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.29 E-value=2.7e+02 Score=18.31 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1980 65 ELVAVSEKTDALKARM 80 (100)
Q Consensus 65 e~~~~~~R~~~L~~Ri 80 (100)
.+..+..|+...+.-.
T Consensus 31 sL~~L~~Rve~Vk~E~ 46 (80)
T PF10224_consen 31 SLEALSDRVEEVKEEN 46 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 196
>PF11281 DUF3083: Protein of unknown function (DUF3083); InterPro: IPR021433 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.26 E-value=39 Score=27.72 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=47.6
Q ss_pred cccccceeecCCCCCCcCCCCCCccchHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 6 RTVQPKFLSRNNKLLDTAGSPLVKEGELDAVI-NNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDAL 76 (100)
Q Consensus 6 R~VeP~~l~r~~~l~~~~~~~~~~~~eLe~Vt-n~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L 76 (100)
|.|-|+|=+|+-++|.+. ++|.+|+ +.-|+.-|+|--....+..| |+-|+.-+.....+...-
T Consensus 141 R~i~~RY~ar~c~lP~~h-------s~ltYvtv~lPlsR~lk~~~~~~~~~~d-y~~lYq~l~d~F~~a~~~ 204 (316)
T PF11281_consen 141 RSIYPRYQARQCELPEDH-------SSLTYVTVSLPLSRRLKQQFLPEINSQD-YTPLYQKLEDAFIQACKA 204 (316)
T ss_pred cccChHHHhccCCCCcch-------hceEEEEEEehhhHHHHHhhhhccCcch-hHHHHHHHHHHHHHHHhh
Confidence 789999999998887653 5555543 55688888887776668888 999998888777666543
No 197
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.25 E-value=5e+02 Score=21.59 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 39 NTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 39 ~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
...-.+..++.+++..-.++-.++..++.......|.|-..|..|..++...
T Consensus 134 ~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~ 185 (456)
T PRK07191 134 ESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKN 185 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566666677778888888888888899999999888888654
No 198
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.23 E-value=3.9e+02 Score=20.21 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
-+++...+|.+|-..+..-...++.+++.|+.+...+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666666665543
No 199
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=20.11 E-value=2.7e+02 Score=20.22 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=26.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
++||+..- +--...|..|||++ | -++...+-.|...|+.|+.+.+.
T Consensus 40 ~~El~~L~--~~i~~Ar~~GDlsE-a-------k~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 40 EDQLAQAR--AAYEAAQAIEDVNE-R-------RRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHH--HHHHHHHHCCChhH-H-------HHHHHHHHHHHHHHHHHHccCEE
Confidence 34666553 23445667777776 1 23444555677777777776554
Done!