Query psy1980
Match_columns 100
No_of_seqs 90 out of 107
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 21:09:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_D Wiskott-aldrich syndrom 100.0 6.9E-36 2.3E-40 233.4 8.7 92 1-99 1-92 (279)
2 2akf_A Coronin-1A; coiled coil 94.8 0.055 1.9E-06 29.3 4.1 29 61-89 3-31 (32)
3 2pnv_A Small conductance calci 90.9 0.35 1.2E-05 27.9 3.9 23 68-90 13-35 (43)
4 2pnv_A Small conductance calci 87.0 2 7E-05 24.6 5.3 37 54-90 6-42 (43)
5 3p8c_F ABL interactor 2; actin 87.0 5.2 0.00018 28.7 8.6 59 30-88 48-106 (159)
6 3pp5_A BRK1, protein brick1; t 84.6 5.7 0.0002 25.1 7.5 54 31-91 19-72 (73)
7 3u0c_A Invasin IPAB, 62 kDa an 84.0 7.4 0.00025 28.6 8.4 29 66-94 119-147 (201)
8 3twe_A Alpha4H; unknown functi 83.7 1.9 6.4E-05 22.3 3.6 21 60-80 4-24 (27)
9 3ci9_A Heat shock factor-bindi 80.2 3.9 0.00013 23.8 4.6 39 49-87 5-47 (48)
10 3tul_A Cell invasion protein S 78.6 5.5 0.00019 28.6 5.9 40 55-94 60-99 (158)
11 1nkp_B MAX protein, MYC proto- 68.8 17 0.0006 22.3 6.2 40 52-91 42-81 (83)
12 3iyn_Q Protein IX, PIX, hexon- 67.5 14 0.00048 25.8 5.7 42 49-90 90-131 (140)
13 1avy_A Fibritin, gpwac M; bact 65.9 10 0.00034 24.1 4.2 31 61-91 12-42 (74)
14 2ovc_A Potassium voltage-gated 65.7 1.9 6.4E-05 23.5 0.7 20 74-93 6-25 (33)
15 1ci6_A Transcription factor AT 64.8 12 0.00042 22.3 4.4 32 59-90 25-56 (63)
16 2yy0_A C-MYC-binding protein; 63.9 17 0.0006 21.2 4.8 32 59-90 21-52 (53)
17 2oqq_A Transcription factor HY 63.0 8.6 0.00029 22.0 3.2 28 59-86 5-32 (42)
18 2oqq_A Transcription factor HY 60.5 20 0.0007 20.4 4.5 25 66-90 5-29 (42)
19 3m0d_C TNF receptor-associated 59.9 25 0.00086 21.0 6.2 15 77-91 47-61 (65)
20 2er8_A Regulatory protein Leu3 59.6 6.9 0.00024 22.9 2.6 22 71-92 49-70 (72)
21 2wuj_A Septum site-determining 56.6 16 0.00056 21.3 3.8 27 60-86 30-56 (57)
22 3hfe_A Potassium voltage-gated 54.9 1.6 5.6E-05 23.5 -0.8 22 74-95 6-27 (31)
23 4abx_A DNA repair protein RECN 53.9 38 0.0013 23.3 6.0 16 71-86 122-137 (175)
24 3rrk_A V-type ATPase 116 kDa s 53.2 15 0.00052 27.6 4.1 37 55-91 97-136 (357)
25 1t2k_D Cyclic-AMP-dependent tr 52.8 25 0.00084 20.5 4.2 33 58-90 23-55 (61)
26 2ieq_A S glycoprotein, spike g 51.9 5.9 0.0002 26.9 1.4 51 37-89 41-101 (109)
27 1r8d_A Transcription activator 51.7 42 0.0014 21.1 7.6 33 59-91 77-109 (109)
28 1jnm_A Proto-oncogene C-JUN; B 51.2 35 0.0012 19.9 5.0 35 57-91 22-56 (62)
29 2wt7_A Proto-oncogene protein 49.9 36 0.0012 20.0 4.7 34 57-90 23-56 (63)
30 1cxz_B Protein (PKN); protein- 49.9 39 0.0013 21.7 5.1 33 54-86 43-85 (86)
31 1nlw_A MAD protein, MAX dimeri 49.6 44 0.0015 20.7 6.0 40 51-90 41-80 (80)
32 2nqb_D Histone H2B; nucleosome 49.3 24 0.00081 24.3 4.2 33 41-73 39-82 (123)
33 3pp5_A BRK1, protein brick1; t 48.7 36 0.0012 21.3 4.7 47 51-97 25-71 (73)
34 1tzy_B Histone H2B; histone-fo 48.2 25 0.00086 24.2 4.2 32 41-72 42-84 (126)
35 1txp_A HnRNP C, heterogeneous 46.6 20 0.0007 18.7 2.7 26 60-85 2-27 (28)
36 1hwt_C Protein (heme activator 44.5 16 0.00056 21.6 2.5 22 71-92 58-79 (81)
37 3fav_B ESAT-6, 6 kDa early sec 44.1 27 0.00092 21.0 3.6 24 65-88 13-36 (94)
38 2p2u_A HOST-nuclease inhibitor 43.8 80 0.0027 22.0 7.2 49 41-89 18-70 (171)
39 3efg_A Protein SLYX homolog; x 42.3 60 0.002 20.1 7.4 52 42-93 13-64 (78)
40 2olt_A Hypothetical protein; s 42.0 86 0.0029 21.8 6.6 45 45-89 19-71 (227)
41 3coq_A Regulatory protein GAL4 41.6 20 0.00067 21.5 2.6 21 73-93 47-67 (89)
42 3p8c_E Probable protein brick1 41.4 64 0.0022 20.3 8.0 52 31-89 19-70 (75)
43 2p4v_A Transcription elongatio 40.9 50 0.0017 22.7 5.0 53 30-84 15-73 (158)
44 3b0c_W CENP-W, centromere prot 40.8 32 0.0011 20.8 3.5 23 51-73 31-53 (76)
45 2ve7_C Kinetochore protein NUF 40.5 64 0.0022 23.9 5.7 57 35-91 113-175 (250)
46 1xaw_A Occludin; coiled-coil, 39.9 33 0.0011 23.9 3.8 25 59-83 61-85 (140)
47 1jcd_A Major outer membrane li 39.6 56 0.0019 19.0 4.5 25 61-85 8-32 (52)
48 2yo3_A General control protein 39.1 1E+02 0.0035 23.7 6.7 45 48-92 207-251 (268)
49 1lwu_C Fibrinogen gamma chain; 39.0 95 0.0033 24.1 6.7 46 44-89 13-58 (323)
50 3qfl_A MLA10; coiled-coil, (CC 38.0 79 0.0027 20.3 5.5 31 38-68 54-84 (115)
51 1m1j_C Fibrinogen gamma chain; 37.8 1E+02 0.0036 24.6 6.9 53 41-93 43-134 (409)
52 3ctw_B RCDA; protein binding; 37.3 35 0.0012 24.6 3.7 31 59-89 115-145 (169)
53 3a7o_A Autophagy protein 16; c 37.2 77 0.0026 19.9 5.3 41 45-85 34-74 (75)
54 1lwu_C Fibrinogen gamma chain; 37.2 1.4E+02 0.0049 23.1 8.0 36 57-92 19-54 (323)
55 1l8d_A DNA double-strand break 36.9 77 0.0026 19.9 5.4 30 57-86 64-93 (112)
56 1pyi_A Protein (pyrimidine pat 36.2 30 0.001 21.0 2.9 22 73-94 50-71 (96)
57 2d4y_A HAP1, flagellar HOOK-as 35.2 1.3E+02 0.0044 23.6 7.1 56 36-91 68-123 (463)
58 2gr7_A Adhesin; trimeric autot 34.8 47 0.0016 22.5 3.9 18 69-86 37-54 (129)
59 2vs0_A Virulence factor ESXA; 33.5 75 0.0026 18.7 4.4 23 46-68 16-38 (97)
60 1zme_C Proline utilization tra 32.0 63 0.0022 18.3 3.7 20 68-87 48-67 (70)
61 2dgc_A Protein (GCN4); basic d 31.9 82 0.0028 18.6 4.4 31 58-88 31-61 (63)
62 3bj4_A Potassium voltage-gated 31.6 9 0.00031 22.5 -0.2 18 76-93 15-32 (49)
63 3p8c_E Probable protein brick1 31.1 99 0.0034 19.4 5.2 42 52-93 26-67 (75)
64 3onj_A T-snare VTI1; helix, HA 30.8 1E+02 0.0035 19.4 6.8 45 44-89 35-83 (97)
65 3ghg_A Fibrinogen alpha chain; 30.5 1.8E+02 0.006 24.7 7.3 46 40-89 103-149 (562)
66 1aa0_A Fibritin, gpwac E; bact 30.1 77 0.0026 21.4 4.2 30 62-91 55-84 (113)
67 2lme_A Adhesin YADA; trimeric 30.0 42 0.0014 21.7 2.9 20 68-87 13-32 (105)
68 1lwu_B Fibrinogen beta chain; 29.2 41 0.0014 26.1 3.2 26 65-90 29-54 (323)
69 3t98_B Nucleoporin NUP58/NUP45 29.1 1.1E+02 0.0038 19.6 4.8 30 57-86 51-80 (93)
70 3rrk_A V-type ATPase 116 kDa s 28.8 71 0.0024 23.8 4.4 35 59-93 94-128 (357)
71 3qfl_A MLA10; coiled-coil, (CC 28.6 97 0.0033 19.8 4.5 45 41-85 3-47 (115)
72 2spc_A Spectrin; cytoskeleton; 28.2 1E+02 0.0035 18.6 7.7 48 41-88 52-99 (107)
73 3ck6_A Putative membrane trans 27.9 1.2E+02 0.0041 21.3 5.3 35 54-88 207-241 (252)
74 1sfc_D Protein (SNAP-25B), pro 27.5 1.1E+02 0.0038 18.8 7.7 61 30-90 20-83 (87)
75 2bez_C E2 glycoprotein; coiled 26.9 1.2E+02 0.0042 19.1 5.2 25 61-85 52-76 (77)
76 1nkp_A C-MYC, MYC proto-oncoge 26.1 1.2E+02 0.0042 18.8 5.8 37 54-90 49-85 (88)
77 1fzc_C Fibrin; blood coagulati 25.8 70 0.0024 24.8 3.9 32 58-89 19-50 (319)
78 3gwk_C SAG1039, putative uncha 25.8 1.1E+02 0.0038 18.2 4.4 23 46-68 18-40 (98)
79 1dh3_A Transcription factor CR 25.6 1E+02 0.0035 17.7 4.6 32 58-89 23-54 (55)
80 3odn_A Dally-like protein; alp 25.2 1.2E+02 0.0042 25.1 5.4 32 41-72 100-131 (506)
81 2v6x_B DOA4-independent degrad 25.2 38 0.0013 19.8 1.8 12 74-85 41-52 (54)
82 3m0a_A TNF receptor-associated 25.1 1.1E+02 0.0036 17.7 6.7 21 71-91 40-60 (66)
83 3zbh_A ESXA; unknown function, 25.0 1.1E+02 0.0038 17.9 4.4 25 45-69 18-42 (99)
84 1fmh_B General control protein 24.8 68 0.0023 16.9 2.6 26 65-90 2-27 (33)
85 3mud_A DNA repair protein XRCC 24.6 1E+02 0.0035 22.2 4.4 19 61-79 139-157 (175)
86 1pl5_A Regulatory protein SIR4 24.5 1.4E+02 0.0046 20.5 4.7 28 53-80 77-104 (142)
87 4abx_A DNA repair protein RECN 24.3 1.6E+02 0.0056 20.0 5.3 42 40-82 71-112 (175)
88 2gtl_O Extracellular hemoglobi 24.2 11 0.00039 27.9 -0.8 20 69-88 10-29 (215)
89 4ehp_B Catenin alpha-1; adhere 24.2 82 0.0028 21.1 3.6 40 39-78 63-109 (111)
90 2ezv_A Type II restriction enz 24.0 1.1E+02 0.0038 23.2 4.6 35 30-64 10-44 (269)
91 3hnw_A Uncharacterized protein 23.8 1.3E+02 0.0043 20.4 4.6 11 39-49 61-71 (138)
92 3nmd_A CGMP dependent protein 23.8 1.4E+02 0.0047 18.6 5.7 43 43-85 19-68 (72)
93 1b67_A Protein (histone HMFA); 23.8 98 0.0033 17.9 3.5 23 51-73 28-50 (68)
94 3lt7_A Adhesin YADA; adhesion, 23.7 1.3E+02 0.0045 18.3 6.1 39 50-88 8-51 (64)
95 1lq7_A Alpha3W; three helix bu 23.6 40 0.0014 20.4 1.7 20 72-91 3-22 (67)
96 3emo_C HIA (adhesin); transmem 23.4 1.2E+02 0.0042 21.2 4.5 19 68-86 69-87 (162)
97 4ioe_A Secreted protein ESXB; 23.2 1.2E+02 0.0041 17.7 4.7 23 46-68 19-41 (93)
98 1rtm_1 Mannose-binding protein 22.4 1.1E+02 0.0038 19.5 3.9 25 62-86 2-26 (149)
99 1nyh_A Regulatory protein SIR4 22.1 1.6E+02 0.0053 20.6 4.7 29 53-81 101-129 (166)
100 1sdi_A ORF-23, hypothetical pr 21.4 1.2E+02 0.004 22.5 4.2 57 39-96 64-129 (213)
101 3ghg_C Fibrinogen gamma chain; 21.1 2.6E+02 0.009 22.4 6.6 45 45-89 93-137 (411)
102 1q08_A Zn(II)-responsive regul 21.0 1.5E+02 0.005 17.8 6.4 37 56-92 38-74 (99)
103 3oja_A Leucine-rich immune mol 20.9 2.9E+02 0.0098 21.2 6.6 39 47-85 411-449 (487)
104 1t3j_A Mitofusin 1; coiled coi 20.8 1E+02 0.0035 20.1 3.4 19 69-87 69-87 (96)
105 2f23_A Anti-cleavage anti-GREA 20.7 85 0.0029 21.3 3.2 53 30-85 16-74 (156)
106 2jee_A YIIU; FTSZ, septum, coi 20.4 1.7E+02 0.0059 18.5 4.7 30 57-86 6-35 (81)
107 3cve_A Homer protein homolog 1 20.4 1.3E+02 0.0044 18.6 3.7 24 64-87 7-30 (72)
108 1am9_A Srebp-1A, protein (ster 20.2 1.6E+02 0.0054 17.9 5.9 34 51-84 44-77 (82)
109 1r8e_A Multidrug-efflux transp 20.0 1.4E+02 0.0049 20.9 4.4 33 56-88 78-110 (278)
No 1
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=233.42 Aligned_cols=92 Identities=33% Similarity=0.515 Sum_probs=69.5
Q ss_pred CCCcccccccceeecCCCCCCcCCCCCCccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 1 MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARM 80 (100)
Q Consensus 1 MPlvkR~VeP~~l~r~~~l~~~~~~~~~~~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri 80 (100)
||||||+|+|+||||+ ++|.+ +++|||||+|+||+|+|||||||++||+|||+||++|++.+++|++.|+.||
T Consensus 1 MPlv~R~veP~~lcr~-~lp~~------i~~eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI 73 (279)
T 3p8c_D 1 MPLVKRNIDPRHLCHT-ALPRG------IKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERV 73 (279)
T ss_dssp ---------------------C------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCceeeecC-CCCcc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 57664 3799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCceeeeeC
Q psy1980 81 ARLNAHTEEFDPKLVTVRF 99 (100)
Q Consensus 81 ~rL~~~v~~lD~k~~~V~~ 99 (100)
++|+++|+++||+.++|++
T Consensus 74 ~~L~~~v~~ld~~~eevSL 92 (279)
T 3p8c_D 74 DRLSVSVTQLDPKEEELSL 92 (279)
T ss_dssp HHHHHHHHTCCTTTCCCCT
T ss_pred HHHHHhcccccccccccch
Confidence 9999999999999999876
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=94.75 E-value=0.055 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
-|.+|+..+..=+..||.|+|||++.|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778888888899999999999998753
No 3
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=90.86 E-value=0.35 Score=27.87 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 68 AVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 68 ~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.+++|...|..||+.|+.|+..|
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666543
No 4
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=87.04 E-value=2 Score=24.57 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
...||-.|+..-=..+-.|..+|..|++.|+..+..|
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3568888888888899999999999999999988765
No 5
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=87.03 E-value=5.2 Score=28.68 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
.+|-...+-.+|+++.=|++.|+.+=.+++.-=..++..+..+.+.|.++++=-.+||.
T Consensus 48 leeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EKva 106 (159)
T 3p8c_F 48 LEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVA 106 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999999999988888888999999988888876666553
No 6
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=84.59 E-value=5.7 Score=25.11 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 31 GELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 31 ~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
.|+..+.|..+..+.+.|..-+-+.++=+. .+.+|...|..+++-|++++...|
T Consensus 19 Re~ie~is~~I~~~v~FLN~F~~sce~KLa-------~ln~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 19 REFIEDMSINIQKIVEFLNKFELSTRNKLS-------DLNEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 377788888889999999988888776655 456677778888888888887665
No 7
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=84.04 E-value=7.4 Score=28.64 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 66 LVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 66 ~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
..+.-.+..+++.++++++.++.+|||..
T Consensus 119 y~~Ads~~~~lekKvn~aq~kLs~L~P~d 147 (201)
T 3u0c_A 119 LKNADSKIKDLENKINQIQTRLSELDPES 147 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34455788999999999999999999964
No 8
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=83.71 E-value=1.9 Score=22.27 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1980 60 KQLNEELVAVSEKTDALKARM 80 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri 80 (100)
.||++|+..+.+|...|..++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467777777666666665543
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=80.16 E-value=3.9 Score=23.84 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhh
Q psy1980 49 GSVVSVAGDIFKQLNEELVAV----SEKTDALKARMARLNAHT 87 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~----~~R~~~L~~Ri~rL~~~v 87 (100)
.+|..+.+++++++.+-...+ ..|......|||.|+..+
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 345666666766666655443 345666666666666543
No 10
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=78.64 E-value=5.5 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCce
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
|-|+++.=-+-+.+--+....|+.|+++++.++.+|||..
T Consensus 60 Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~ 99 (158)
T 3tul_A 60 ATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPAD 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4455555556666777889999999999999999999964
No 11
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.85 E-value=17 Score=22.26 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 52 VSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 52 s~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
-.-|-+-...|..+...+......|+.++..|+..+..|.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777777888888888888888877664
No 12
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=67.52 E-value=14 Score=25.82 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 49 GSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 49 ~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
++.+.+.+|+..-+..++..+..+.+.|..+|..|.+.+..+
T Consensus 90 ~~~s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 90 ASRSSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455788999999999999999999999999999999877765
No 13
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=65.90 E-value=10 Score=24.05 Aligned_cols=31 Identities=10% Similarity=0.382 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
.+...++.+..|++.++.+|..+|.+|+.|.
T Consensus 12 ~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 12 AIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 4566677888888888888888888888775
No 14
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=65.67 E-value=1.9 Score=23.52 Aligned_cols=20 Identities=10% Similarity=0.327 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhhcCCc
Q psy1980 74 DALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 74 ~~L~~Ri~rL~~~v~~lD~k 93 (100)
.++-.|+.++|.+|+++|.|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~K 25 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHK 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665554
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.82 E-value=12 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
..+|..++..+..+-..|..+|..|+..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888877654
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.94 E-value=17 Score=21.16 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
...|-.|...+-.|...|+.+++.+..++.+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678888899999999999999999888764
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=63.05 E-value=8.6 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
..+|...+..+..|.+.|.+||.-|+..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666667777777777777666543
No 18
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.54 E-value=20 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 66 LVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 66 ~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+..+-.|.+.|+.|...|+.+|..|
T Consensus 5 l~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888887777654
No 19
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=59.90 E-value=25 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhhcC
Q psy1980 77 KARMARLNAHTEEFD 91 (100)
Q Consensus 77 ~~Ri~rL~~~v~~lD 91 (100)
++.|+.|+.+|.++|
T Consensus 47 ~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 47 RERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344666666665554
No 20
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=59.57 E-value=6.9 Score=22.92 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCC
Q psy1980 71 EKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 71 ~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
.+...|+.||+.|+..+.++.+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788888888888877754
No 21
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.63 E-value=16 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
.++..++..+......|+.++.+|+.+
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555666666677777766654
No 22
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=54.92 E-value=1.6 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhcCCcee
Q psy1980 74 DALKARMARLNAHTEEFDPKLV 95 (100)
Q Consensus 74 ~~L~~Ri~rL~~~v~~lD~k~~ 95 (100)
+.+-.|+.|.+++++++|.|-.
T Consensus 6 nTIGaRLnRvE~k~t~MD~kL~ 27 (31)
T 3hfe_A 6 NTIGARLNRVEDKVTQLDQRLA 27 (31)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888886643
No 23
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=53.88 E-value=38 Score=23.31 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1980 71 EKTDALKARMARLNAH 86 (100)
Q Consensus 71 ~R~~~L~~Ri~rL~~~ 86 (100)
.|...+..|+..+..-
T Consensus 122 ~rL~~ie~RL~~l~~L 137 (175)
T 4abx_A 122 EALDRVEARLSALSKL 137 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 24
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=53.18 E-value=15 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcC
Q psy1980 55 AGDIFKQLNEELVAVSEKTDALKARMARLNAH---TEEFD 91 (100)
Q Consensus 55 AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~---v~~lD 91 (100)
+++.+.++..++..+..|...|+..+.+|+.. +..|.
T Consensus 97 ~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 97 AEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 34557788888888888888888888888877 65553
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.84 E-value=25 Score=20.52 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
-..+|..++..+...-..|+..|..|+..+.+|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888887777654
No 26
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=51.89 E-value=5.9 Score=26.87 Aligned_cols=51 Identities=22% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhh------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 37 INNTLCNCLKQLGS------VVSVAGDIFK----QLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 37 tn~tL~nilRQL~s------Ls~~AediF~----eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.|.+|+.++.||+. ++-. +||. +|+.|+..+..|+..|..-...|+.-+..
T Consensus 41 q~~aLs~ll~QLn~NF~A~s~~lq--~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn 101 (109)
T 2ieq_A 41 QGSALNHLTSQLRHNFQSGGRGSG--RGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQ 101 (109)
T ss_dssp HHHHHHHHHCCC-------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcchHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777762 2222 5554 56666666666666655554444444433
No 27
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=51.71 E-value=42 Score=21.10 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
-..|..+...+..+...|+..+..|+.++..+|
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 109 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTIDRTLLSVD 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445666666777777777777777777766655
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.18 E-value=35 Score=19.95 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+-..+|..++..+...-..|+..|..|+..+.+|-
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999998888764
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.93 E-value=36 Score=20.00 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+-..+|..++..+...-..|+..|..|+..+.+|
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888888777654
No 30
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=49.92 E-value=39 Score=21.75 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh
Q psy1980 54 VAGDIFKQLNE----------ELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 54 ~AediF~eL~~----------e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
=||++|.-..+ |+...+.+...|+.++..|...
T Consensus 43 GaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 43 GAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46667666554 7888888888888888887754
No 31
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=49.63 E-value=44 Score=20.68 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
+-+-|.+-...|..+...+......|+.++..|..++.+|
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456777777888888888888888888888888877664
No 32
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=49.31 E-value=24 Score=24.26 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 41 LCNCLKQLG-----------SVVSVAGDIFKQLNEELVAVSEKT 73 (100)
Q Consensus 41 L~nilRQL~-----------sLs~~AediF~eL~~e~~~~~~R~ 73 (100)
+..+|+|.. -+..|.+|||..|..|+..+++-.
T Consensus 39 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~n 82 (123)
T 2nqb_D 39 IYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN 82 (123)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666643 367799999999999999988743
No 33
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=48.70 E-value=36 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeee
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTV 97 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~V 97 (100)
++..--.++.=|.+=....-.|...|..|+++|+.++.-|+.|--.|
T Consensus 25 is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 25 MSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555666666778899999999999999999888775544
No 34
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=48.19 E-value=25 Score=24.22 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=24.9
Q ss_pred HHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 41 LCNCLKQLG-----------SVVSVAGDIFKQLNEELVAVSEK 72 (100)
Q Consensus 41 L~nilRQL~-----------sLs~~AediF~eL~~e~~~~~~R 72 (100)
+..+|+|.. -+..|.+|||..|..|+..+++-
T Consensus 42 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~ 84 (126)
T 1tzy_B 42 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHY 84 (126)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666653 35679999999999999998875
No 35
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=46.63 E-value=20 Score=18.69 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 60 KQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 60 ~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
+.+-.|+..+-+++.+|-+++++.+.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45677888999999999988887653
No 36
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=44.47 E-value=16 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCC
Q psy1980 71 EKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 71 ~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
..+..|+.||+.|+..+.++.+
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4567889999999998887754
No 37
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=44.09 E-value=27 Score=20.95 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 65 ELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 65 e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
-+..+......|+.-++.|...+.
T Consensus 13 ~a~~~~~~~~~i~~~l~~l~~~v~ 36 (94)
T 3fav_B 13 AASAIQGNVTSIHSLLDEGKQSLT 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433333
No 38
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=43.84 E-value=80 Score=22.02 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=36.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEK----TDALKARMARLNAHTEE 89 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R----~~~L~~Ri~rL~~~v~~ 89 (100)
....||++|.+-+--..|=.++..|+..+.++ ...|+.|+..|+..|..
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~ 70 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVAT 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999777777777777777777665 46678888888877653
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.29 E-value=60 Score=20.13 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 42 CNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 42 ~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
-.=|-.|=.-..|.++...+|...+..-..-...|+.++..|..++..+.+.
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445566666789999999999999999999999999999999999887764
No 40
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=41.97 E-value=86 Score=21.84 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 45 LKQLGSVVSVAGDIFKQLNE--------ELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~--------e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
+.+.+..+.-|..+|.++.+ ++.....+...+..+.|.+...+..
T Consensus 19 l~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~ 71 (227)
T 2olt_A 19 LQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRL 71 (227)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555543 4667888888888888888887764
No 41
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=41.58 E-value=20 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhhcCCc
Q psy1980 73 TDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 73 ~~~L~~Ri~rL~~~v~~lD~k 93 (100)
...|+.||..|+..+.++.|.
T Consensus 47 ~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 47 LTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 445666777777666666554
No 42
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=41.45 E-value=64 Score=20.26 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 31 GELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 31 ~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.|+..+.|..+.++...|.+.+...++=|. .+.+|...|..+++-|+++|..
T Consensus 19 Re~ie~in~~I~~~v~FLN~F~~sce~KLa-------~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 19 REYIEIITSSIKKIADFLNSFDMSCRSRLA-------TLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 477888899999999999998888777655 4556777778888888887764
No 43
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=40.92 E-value=50 Score=22.69 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=33.0
Q ss_pred cchHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 30 EGELDAVIN------NTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 30 ~~eLe~Vtn------~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
..||+..-+ ..-....|-.|||++.|+-... -++...+-.|...|+.++.+.+
T Consensus 15 ~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aa--k~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 15 KQELNYLWREERPEVTKKVTWAASLGDRSENADYQYN--KKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHH--HHHHHHHHHHHHHHHHHHhhCe
Confidence 456666633 2233556889999988875554 4555566666666666666544
No 44
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=40.79 E-value=32 Score=20.82 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKT 73 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~ 73 (100)
+.++++++|..|..|+..++...
T Consensus 31 i~~~~~~Fi~~la~eA~~~a~~~ 53 (76)
T 3b0c_W 31 VHLSFLLFLHRLAEEARTNAFEN 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 36788999999999999887654
No 45
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=40.46 E-value=64 Score=23.91 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 35 AVINNTLCNCLKQLGSVVSVA------GDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 35 ~Vtn~tL~nilRQL~sLs~~A------ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
.+.+-+=-.+.|+||-+..|+ ...|.++..+......|...|+.-...++.++.+|-
T Consensus 113 DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk 175 (250)
T 2ve7_C 113 DILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLE 175 (250)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445567777775544 346777778888888888888887777777776653
No 46
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=39.85 E-value=33 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARL 83 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL 83 (100)
|.+|+.++..++.|...|...+++|
T Consensus 61 Yk~Lhaev~~v~~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 61 YKSLQSVLDEINKELSRLDKELDDY 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
No 47
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.57 E-value=56 Score=19.05 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
+|..++..++.++..|+.-|..+..
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444443
No 48
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=39.10 E-value=1e+02 Score=23.67 Aligned_cols=45 Identities=7% Similarity=0.216 Sum_probs=37.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 48 LGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 48 L~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
+.....|-..-|++|..++..+-.|...+..+|..+..++-.+|-
T Consensus 207 ~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~ 251 (268)
T 2yo3_A 207 VEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIEN 251 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999999999999999999999998888877663
No 49
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.98 E-value=95 Score=24.09 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 44 CLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 44 ilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
=|.+|..+...++.-...|...+.....+...|+..|..|+.++..
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666667778888888888888888888888776654
No 50
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=37.97 E-value=79 Score=20.26 Aligned_cols=31 Identities=6% Similarity=0.036 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy1980 38 NNTLCNCLKQLGSVVSVAGDIFKQLNEELVA 68 (100)
Q Consensus 38 n~tL~nilRQL~sLs~~AediF~eL~~e~~~ 68 (100)
+...-.-++|+=+++--+||+..+...++..
T Consensus 54 d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 54 DSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788999999999999999999888764
No 51
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.82 E-value=1e+02 Score=24.64 Aligned_cols=53 Identities=8% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHH-----------------------------HHHHHHHH----------HHHHHHHHHHHHHHHHH
Q psy1980 41 LCNCLKQLGSVVSVAG-----------------------------DIFKQLNE----------ELVAVSEKTDALKARMA 81 (100)
Q Consensus 41 L~nilRQL~sLs~~Ae-----------------------------diF~eL~~----------e~~~~~~R~~~L~~Ri~ 81 (100)
|=+++.||+++..-+. +|..++.. ++..+......++.+|+
T Consensus 43 LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~ 122 (409)
T 1m1j_C 43 IEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKIT 122 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHhhhhhcCCc
Q psy1980 82 RLNAHTEEFDPK 93 (100)
Q Consensus 82 rL~~~v~~lD~k 93 (100)
.|+.++.++..+
T Consensus 123 ~l~~~i~~l~~~ 134 (409)
T 1m1j_C 123 QLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
No 52
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Probab=37.26 E-value=35 Score=24.56 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
+.+|=..+..+-.|+..|+.||.+|...+-.
T Consensus 115 ~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~ 145 (169)
T 3ctw_B 115 VEELPFGLMNLLQRSERLYERVRHLDRRMYV 145 (169)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777888889999999999999999998763
No 53
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.21 E-value=77 Score=19.94 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=29.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
||+|-...+.-..=.+-|..|+-.++---+-|++|+..+++
T Consensus 34 I~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 34 IRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 56666666666666677888888888888899998887764
No 54
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.16 E-value=1.4e+02 Score=23.06 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
.+.-....++..+......++.+|++|+.+|.++..
T Consensus 19 ~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 19 QIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666777777777776665543
No 55
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.94 E-value=77 Score=19.86 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
+++.+...++..+..+...|...+..++..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~ 93 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERE 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 56
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=36.22 E-value=30 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhhcCCce
Q psy1980 73 TDALKARMARLNAHTEEFDPKL 94 (100)
Q Consensus 73 ~~~L~~Ri~rL~~~v~~lD~k~ 94 (100)
...|+.||..|+..+.++....
T Consensus 50 ~~~Le~rl~~le~~l~~~~~~~ 71 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKEYGVDP 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 3456667777776666665443
No 57
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=35.18 E-value=1.3e+02 Score=23.61 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 36 VINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 36 Vtn~tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+.-...-.+..++.+++..=.++-.++..++.....++|.|-..|..|...+....
T Consensus 68 ~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 68 ALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344456677777888888888888999999999999999999999999887653
No 58
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=34.81 E-value=47 Score=22.49 Aligned_cols=18 Identities=6% Similarity=0.377 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1980 69 VSEKTDALKARMARLNAH 86 (100)
Q Consensus 69 ~~~R~~~L~~Ri~rL~~~ 86 (100)
+..|.+.|+.||+++..+
T Consensus 37 ~~~~in~L~~~I~~~~k~ 54 (129)
T 2gr7_A 37 LAGQVNNLEGKVNKVGKR 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777788888777654
No 59
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=33.50 E-value=75 Score=18.68 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q psy1980 46 KQLGSVVSVAGDIFKQLNEELVA 68 (100)
Q Consensus 46 RQL~sLs~~AediF~eL~~e~~~ 68 (100)
.++..-+.--+++..+|..++..
T Consensus 16 ~~~~~~~~~l~~~l~~L~~~~~~ 38 (97)
T 2vs0_A 16 QSYGQGSDQIRQILSDLTRAQGE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555444
No 60
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.97 E-value=63 Score=18.30 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy1980 68 AVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 68 ~~~~R~~~L~~Ri~rL~~~v 87 (100)
.+..|...|+..|..|+..+
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 61
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.89 E-value=82 Score=18.63 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
=..+|..++..+...-..|...|..|...+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777888888888888877664
No 62
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=31.57 E-value=9 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhhhcCCc
Q psy1980 76 LKARMARLNAHTEEFDPK 93 (100)
Q Consensus 76 L~~Ri~rL~~~v~~lD~k 93 (100)
+-.|+.|+|..|+.+|.|
T Consensus 15 ~~~Rl~rVE~qV~~md~K 32 (49)
T 3bj4_A 15 IGARLNRVEDKVTQLDQR 32 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555543
No 63
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=31.08 E-value=99 Score=19.37 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 52 VSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 52 s~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+.+--.++.=|.+=....-.|...|..|++.|+.++.-|+.|
T Consensus 26 n~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAk 67 (75)
T 3p8c_E 26 TSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEAR 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555565556667789999999999999999877654
No 64
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=30.77 E-value=1e+02 Score=19.42 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhh
Q psy1980 44 CLKQLGSVVSVAGDIFKQLNEELVAV----SEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 44 ilRQL~sLs~~AediF~eL~~e~~~~----~~R~~~L~~Ri~rL~~~v~~ 89 (100)
.|++.-.-...|.+|...+.-|+.++ +.|. .++.||..-...+..
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~-~~~~klr~Yk~dl~~ 83 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERA-TYKAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 45666666678999999999999999 6674 677777766666554
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.47 E-value=1.8e+02 Score=24.65 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=25.9
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 40 TLCNCLKQLG-SVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 40 tL~nilRQL~-sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
-+-|.+-|++ +|-++-..|=.++.+++ .+...||..|+.+..++..
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQl----snIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKV----QHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4556666777 66666666655555554 3445555555554444443
No 66
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=30.06 E-value=77 Score=21.36 Aligned_cols=30 Identities=10% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy1980 62 LNEELVAVSEKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 62 L~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+...++.+..|++.++.+|..++.+|..|.
T Consensus 55 ~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 55 NETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhheeecccccchhhhhhhhHHHH
Confidence 444556677777777777777777777654
No 67
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=30.03 E-value=42 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy1980 68 AVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 68 ~~~~R~~~L~~Ri~rL~~~v 87 (100)
..+.|.+.|..||+++..++
T Consensus 13 ~~~~~~~~l~~~i~~~~~~~ 32 (105)
T 2lme_A 13 KGAHKFRQLDNRLDKLDTRV 32 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665543
No 68
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=29.23 E-value=41 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 65 ELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 65 e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.+..+..+...|+++|.+|+.+|.++
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q 54 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQ 54 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566667777777666543
No 69
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=29.08 E-value=1.1e+02 Score=19.57 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
.++..++.-.+.+|.|...|-++|+.+...
T Consensus 51 ~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 51 MAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777788888888887777654
No 70
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.84 E-value=71 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q psy1980 59 FKQLNEELVAVSEKTDALKARMARLNAHTEEFDPK 93 (100)
Q Consensus 59 F~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k 93 (100)
+.++...+..+..+...|..|+..|+.....+...
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 67788888899999999999999999888776543
No 71
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=28.61 E-value=97 Score=19.82 Aligned_cols=45 Identities=11% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
+..++..|+++..-=..++.++..|+..+-.-...++.=+...+.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~ 47 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGE 47 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888887655567788888877776666666665555544
No 72
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=28.16 E-value=1e+02 Score=18.61 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=34.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+.+---.+..|...|..+..+=+-+...|..|...|..|-+.|.....
T Consensus 52 ~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~~ 99 (107)
T 2spc_A 52 INGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLI 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555677777777777777788888888888888888776543
No 73
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=27.88 E-value=1.2e+02 Score=21.26 Aligned_cols=35 Identities=6% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
-...-|.+++.++..+.+...++.+++..+.....
T Consensus 207 ~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~ 241 (252)
T 3ck6_A 207 SRPHQYRFAHNNITRINETIEFYLGEVALFQDEIK 241 (252)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457899999999999999999999988876554
No 74
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.48 E-value=1.1e+02 Score=18.84 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEE---LVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~e---~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
.++++.=-.-.|-.+-.-++.|-..|-+|=.||..+ +..+...+.....||.....++..+
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555443 3344444444445555444444443
No 75
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=26.89 E-value=1.2e+02 Score=19.11 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 61 QLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
.|.+-...|++=...+..|+|.|++
T Consensus 52 qL~~NFgAISssi~dIy~RLd~leA 76 (77)
T 2bez_C 52 QLSSNFGAISSVLNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhc
Confidence 3333344455555555555665554
No 76
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.09 E-value=1.2e+02 Score=18.81 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 54 VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 54 ~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
-|-+-..+|..+...+..=...|+.+...|..++.+|
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555544444444444455555554444443
No 77
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.85 E-value=70 Score=24.81 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
-...|.+.+.....+...|+..|..|+.++..
T Consensus 19 ~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 19 SIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455555556666667777777666544
No 78
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.75 E-value=1.1e+02 Score=18.19 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q psy1980 46 KQLGSVVSVAGDIFKQLNEELVA 68 (100)
Q Consensus 46 RQL~sLs~~AediF~eL~~e~~~ 68 (100)
.++..-+.--+++...|..++..
T Consensus 18 ~~~~~~~~~i~~~l~~L~~~~~~ 40 (98)
T 3gwk_C 18 QKYTAGSQQVTEVLNLLTQEQAV 40 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555543
No 79
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.59 E-value=1e+02 Score=17.69 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 58 iF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
-..+|..++..+..--..|...+..|+..+.+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677777777878888888888888876653
No 80
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=25.24 E-value=1.2e+02 Score=25.15 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=22.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 41 LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEK 72 (100)
Q Consensus 41 L~nilRQL~sLs~~AediF~eL~~e~~~~~~R 72 (100)
..-.-+-.|+|...+.++|.+||.|+......
T Consensus 100 ~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g 131 (506)
T 3odn_A 100 NSMFIRTYGVIYERNSYVFSDLFKELETYFAN 131 (506)
T ss_dssp HHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334667788888888888888888876543
No 81
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.20 E-value=38 Score=19.84 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHh
Q psy1980 74 DALKARMARLNA 85 (100)
Q Consensus 74 ~~L~~Ri~rL~~ 85 (100)
..||.|++.|..
T Consensus 41 dDLQARLdsLRR 52 (54)
T 2v6x_B 41 DDLQARLNTLKK 52 (54)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 568888888875
No 82
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=25.08 E-value=1.1e+02 Score=17.74 Aligned_cols=21 Identities=5% Similarity=0.265 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q psy1980 71 EKTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 71 ~R~~~L~~Ri~rL~~~v~~lD 91 (100)
+|...-+..|..|+.++.++|
T Consensus 40 ~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 40 RQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHHHHHHH
Confidence 444444555666776666655
No 83
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=24.99 E-value=1.1e+02 Score=17.94 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=13.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAV 69 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~ 69 (100)
..++...+..-+++...|...+..+
T Consensus 18 A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 18 ARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566665555543
No 84
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=24.82 E-value=68 Score=16.94 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1980 65 ELVAVSEKTDALKARMARLNAHTEEF 90 (100)
Q Consensus 65 e~~~~~~R~~~L~~Ri~rL~~~v~~l 90 (100)
|+..+-.|+..|+.|--....+|..|
T Consensus 2 evqalkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556667777776665555555544
No 85
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.61 E-value=1e+02 Score=22.17 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1980 61 QLNEELVAVSEKTDALKAR 79 (100)
Q Consensus 61 eL~~e~~~~~~R~~~L~~R 79 (100)
.|..++..+-......+.+
T Consensus 139 kLqkeiD~LEDeL~~eKek 157 (175)
T 3mud_A 139 KNEKSIDDLEEKVAHAKEE 157 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 86
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=24.50 E-value=1.4e+02 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARM 80 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri 80 (100)
..|.+|...|+.|++.-.-|..+||+-+
T Consensus 77 avaneiirslsdevmrneiritslqgdl 104 (142)
T 1pl5_A 77 AVANEIIRSLSDEVMRNEIRITSLQGDL 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhhheeeeeeccch
Confidence 4789999999999999999999998765
No 87
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=24.33 E-value=1.6e+02 Score=19.97 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 40 TLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMAR 82 (100)
Q Consensus 40 tL~nilRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~r 82 (100)
.|..+++.|..++.+-.. |.++..-+.....-...+...+.+
T Consensus 71 ~L~~a~~~L~~l~~~d~~-l~~~~e~l~~a~~~l~d~~~~L~~ 112 (175)
T 4abx_A 71 LIGEAVRALNAGAKYDET-VMQLQNELRAALESVQAIAGELRD 112 (175)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666555433 444444444444443333333333
No 88
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=24.23 E-value=11 Score=27.89 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1980 69 VSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 69 ~~~R~~~L~~Ri~rL~~~v~ 88 (100)
|.+|++.|+.+|+.|+..+.
T Consensus 10 ~~~~~~~l~~~~~~l~~~~~ 29 (215)
T 2gtl_O 10 LIERTNKITTSISHVESLLD 29 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhhhhh
Confidence 45566666666666665544
No 89
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=24.21 E-value=82 Score=21.11 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=26.4
Q ss_pred HHHHHHHHH-HhhH-HHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy1980 39 NTLCNCLKQ-LGSV-VSVAGD-----IFKQLNEELVAVSEKTDALKA 78 (100)
Q Consensus 39 ~tL~nilRQ-L~sL-s~~Aed-----iF~eL~~e~~~~~~R~~~L~~ 78 (100)
.++||.+|| |.+| +.|... .=.+|...+..+.++++.|+.
T Consensus 63 v~eCnavRqaLQdLlseym~~~g~ke~se~L~~aI~km~~kt~dLrR 109 (111)
T 4ehp_B 63 VAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRR 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 568999998 5555 344432 224566677778888877764
No 90
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease, protein/DNA complex, hydrolase/DNA complex; 2.40A {Synthetic} PDB: 2f03_A*
Probab=24.04 E-value=1.1e+02 Score=23.18 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy1980 30 EGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNE 64 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nilRQL~sLs~~AediF~eL~~ 64 (100)
.++||.|--.||--+++-+-+-.+-|-+||++=..
T Consensus 10 ld~lEevEk~tLr~vvqAi~dY~k~A~~IF~~e~d 44 (269)
T 2ezv_A 10 LDELESVEKQTLRTIVQALQQYSKEAKSIFETTAA 44 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999987544
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.85 E-value=1.3e+02 Score=20.43 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q psy1980 39 NTLCNCLKQLG 49 (100)
Q Consensus 39 ~tL~nilRQL~ 49 (100)
.+-.|+.--|-
T Consensus 61 LaALNiadEl~ 71 (138)
T 3hnw_A 61 MMYLNIADDYF 71 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 92
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.84 E-value=1.4e+02 Score=18.57 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 43 NCLKQLGSVVSVAG-------DIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 43 nilRQL~sLs~~Ae-------diF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
|.||+|=.+.+... .+..+|..++..--.-...|+.-+|+++.
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44777776664333 24555555555555555555555555543
No 93
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=23.77 E-value=98 Score=17.87 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKT 73 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~ 73 (100)
|.+.+++.+.+|+.|+...+...
T Consensus 28 l~~a~e~fi~~l~~~A~~~a~~~ 50 (68)
T 1b67_A 28 LAKVLEEMGEEIASEAVKLAKHA 50 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56778888888888888776543
No 94
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=23.68 E-value=1.3e+02 Score=18.31 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHhhhh
Q psy1980 50 SVVSVAGDIFKQLN----EELVAVS-EKTDALKARMARLNAHTE 88 (100)
Q Consensus 50 sLs~~AediF~eL~----~e~~~~~-~R~~~L~~Ri~rL~~~v~ 88 (100)
+-.+|...=|+-+. .++.... .+.+.|..+|++++.++.
T Consensus 8 ~AN~YTD~~v~n~t~~~l~~AN~YTD~KF~qL~nKi~k~~kr~~ 51 (64)
T 3lt7_A 8 TANSYTDVTVSNSTKKAIRESNQYTDHKFHQLENRLDKLEKRLL 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 33445554444444 4444444 677777777777776653
No 95
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.60 E-value=40 Score=20.43 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhcC
Q psy1980 72 KTDALKARMARLNAHTEEFD 91 (100)
Q Consensus 72 R~~~L~~Ri~rL~~~v~~lD 91 (100)
|+..|.+++..|+.+|..|.
T Consensus 3 rvkaleekvkaleekvkalg 22 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALG 22 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 55556666666666655554
No 96
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=23.38 E-value=1.2e+02 Score=21.18 Aligned_cols=19 Identities=5% Similarity=0.352 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy1980 68 AVSEKTDALKARMARLNAH 86 (100)
Q Consensus 68 ~~~~R~~~L~~Ri~rL~~~ 86 (100)
.+..|.+.|+.||+++..+
T Consensus 69 n~~~~in~L~~~I~~~~k~ 87 (162)
T 3emo_C 69 NLAGQVNNLEGKVNKVGKR 87 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhHHh
Confidence 3456777777777776644
No 97
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=23.18 E-value=1.2e+02 Score=17.71 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=11.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q psy1980 46 KQLGSVVSVAGDIFKQLNEELVA 68 (100)
Q Consensus 46 RQL~sLs~~AediF~eL~~e~~~ 68 (100)
.++..-+.--+++...|...+..
T Consensus 19 ~~~~~~~~~i~~~l~~L~~~~~~ 41 (93)
T 4ioe_A 19 GNFKNAAGEAQSQINRLEGDINS 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444
No 98
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=22.41 E-value=1.1e+02 Score=19.46 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 62 LNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 62 L~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
|..++..+..+...|+.++.+++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666666677766666654
No 99
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=22.07 E-value=1.6e+02 Score=20.63 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 53 SVAGDIFKQLNEELVAVSEKTDALKARMA 81 (100)
Q Consensus 53 ~~AediF~eL~~e~~~~~~R~~~L~~Ri~ 81 (100)
..|.+|...|+.|++.-.-|..+||+-+-
T Consensus 101 avaneiirslsdevmrneiritslqgdlt 129 (166)
T 1nyh_A 101 AVANEIIRSLSDEVMRNEIRITSLQGDLT 129 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhheeeeeeccchh
Confidence 47899999999999999999999987653
No 100
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=21.41 E-value=1.2e+02 Score=22.45 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=43.3
Q ss_pred HHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceee
Q psy1980 39 NTLCNCLKQLG---------SVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVT 96 (100)
Q Consensus 39 ~tL~nilRQL~---------sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~k~~~ 96 (100)
.+|-.+..||+ .+.+|+-.|.. |+.-+..=..-.+.|.+||++++..+..+|+..+.
T Consensus 64 ~Gl~~L~~~L~~~~~~~~~~el~RY~~~ll~-LErkL~k~~~~l~~L~~rI~q~~rQ~~hf~~~~~~ 129 (213)
T 1sdi_A 64 VGLETLLGVLNASSRQGLNAELTRYTLSLMV-LERKLSSAKGALDTLGNRINGLQRQLEHFDLQSET 129 (213)
T ss_dssp HHHHHHHHHHHCCCSSSHHHHHHHHHHHHHH-HHHHHHHSTTHHHHHHHHHHTTHHHHTTSCTTSHH
T ss_pred HHHHHHHHHHcccCCCccchHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 34555666664 36788888774 77777777778889999999999999988876554
No 101
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.13 E-value=2.6e+02 Score=22.44 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1980 45 LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEE 89 (100)
Q Consensus 45 lRQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~ 89 (100)
+.++..+....+....+|...+.....+...|+..|..|+.++.+
T Consensus 93 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445544444444889999999999999999999999988754
No 102
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.03 E-value=1.5e+02 Score=17.82 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy1980 56 GDIFKQLNEELVAVSEKTDALKARMARLNAHTEEFDP 92 (100)
Q Consensus 56 ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~~lD~ 92 (100)
.++..-|......+..+...|+.....|+..+...+.
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566667778888888888888888888888776654
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.88 E-value=2.9e+02 Score=21.23 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 47 QLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 47 QL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
++....+.-++++.++..|-..+.+-.+..+.+++++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 344555566667777776665544444444444444433
No 104
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.76 E-value=1e+02 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1980 69 VSEKTDALKARMARLNAHT 87 (100)
Q Consensus 69 ~~~R~~~L~~Ri~rL~~~v 87 (100)
+..+++.|+.+-..|+..+
T Consensus 69 iqs~aK~LRnKA~~L~~eL 87 (96)
T 1t3j_A 69 MQNNSKLLRNKAVQLESEL 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 105
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=20.68 E-value=85 Score=21.30 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1980 30 EGELDAVINNTLCNCL------KQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNA 85 (100)
Q Consensus 30 ~~eLe~Vtn~tL~nil------RQL~sLs~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~~ 85 (100)
.+||+. -....--++ |..|||++-|+ +..-..+...+..|...|+.++.+.+.
T Consensus 16 ~~el~~-~~~~r~~~~~~i~~A~~~GDlsEnae--y~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 16 MQQLER-ERERLQEATKILQELMESSDDYDDSG--LEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCSCCSCSHH--HHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 456666 444444444 44566665555 455556666777788888888877543
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.39 E-value=1.7e+02 Score=18.45 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1980 57 DIFKQLNEELVAVSEKTDALKARMARLNAH 86 (100)
Q Consensus 57 diF~eL~~e~~~~~~R~~~L~~Ri~rL~~~ 86 (100)
++|..|..=+...-+...-||..|+.|..+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444444443
No 107
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.38 E-value=1.3e+02 Score=18.62 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1980 64 EELVAVSEKTDALKARMARLNAHT 87 (100)
Q Consensus 64 ~e~~~~~~R~~~L~~Ri~rL~~~v 87 (100)
.-+...-.|-..|++||..++..+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444445555555544443
No 108
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=20.21 E-value=1.6e+02 Score=17.92 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1980 51 VVSVAGDIFKQLNEELVAVSEKTDALKARMARLN 84 (100)
Q Consensus 51 Ls~~AediF~eL~~e~~~~~~R~~~L~~Ri~rL~ 84 (100)
+-.-|-+-..+|..++..+......|+.++...+
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345667777788888877777777777777654
No 109
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.03 E-value=1.4e+02 Score=20.95 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1980 56 GDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88 (100)
Q Consensus 56 ediF~eL~~e~~~~~~R~~~L~~Ri~rL~~~v~ 88 (100)
+++-.-|......+..+...|+.....|+..+.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKK 110 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666665554
Done!