RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1980
         (100 letters)



>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin
           polymerization, protein binding; 2.29A {Homo sapiens}
          Length = 279

 Score = 81.9 bits (201), Expect = 2e-20
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 1   MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFK 60
           MP V R + P+ L            P   + EL+ V N +L N ++QL S+   A DIF 
Sbjct: 1   MPLVKRNIDPRHLCH-------TALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFG 53

Query: 61  QLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTVRFS 100
           +L  E  + S + ++L+ R+ RL+    + DPK   +   
Sbjct: 54  ELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQ 93


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.045
 Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 16/82 (19%)

Query: 4    VVRTVQPKFLSRNNKLLDTA-----GSPLVKEGELDAVINNTLCNCLKQLGSVVSVAGDI 58
             ++ V  +   R   L++           V  G+L A+  +T+ N L  +          
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--DTVTNVLNFIKL-------- 1874

Query: 59   FKQLNEELVAVSEKTDALKARM 80
             ++++   +  S   + ++  +
Sbjct: 1875 -QKIDIIELQKSLSLEEVEGHL 1895


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.0 bits (69), Expect = 0.055
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 52/148 (35%)

Query: 3   FVVRTVQPKFLSRNNKLLDT-----------AG---SPLVKEGELDAVINN--------- 39
            V R     +L     LL+             G   + +  +  L   +           
Sbjct: 130 NVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 40  TLCNC------LKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARL-------NA- 85
            L NC      L+ L  ++      +   ++    +  +  +++A + RL       N  
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 86  ----------HTEEFDPK---LVTVRFS 100
                         F+     L+T RF 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFK 275


>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane
           protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
          Length = 284

 Score = 30.1 bits (68), Expect = 0.084
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 19/72 (26%)

Query: 1   MPFVVRTVQPKFLSRNNKLLDTAGS--------------PLVKEGELDAVINNTLCN--C 44
           +P  +   +  F S + +L   A +              PL     +   I   +     
Sbjct: 163 VPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAI---MSWARG 219

Query: 45  LKQLGSVVSVAG 56
           + + G+VV +A 
Sbjct: 220 ISEFGAVVVIAY 231


>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
           nucleotide-binding, membrane, transmembrane, transport
           protein; 3.00A {Methanosarcina acetivorans} SCOP:
           f.58.1.1
          Length = 295

 Score = 30.1 bits (68), Expect = 0.096
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 19/72 (26%)

Query: 1   MPFVVRTVQPKFLSRNNKLLDTAGS--------------PLVKEGELDAVINNTLCN--C 44
           MP++  + +  F S + +L + A S              PL     L   +   +     
Sbjct: 175 MPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSV---MTWARA 231

Query: 45  LKQLGSVVSVAG 56
           + + G+VV +A 
Sbjct: 232 ISEFGAVVILAY 243


>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
           HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
           b.47.1.2 PDB: 1fiz_A*
          Length = 290

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 21  DTAGSPLVKEGELDAVINNTLCNCLKQLGSVVS 53
               SP+++E  +D +I+  LCN  +     + 
Sbjct: 148 ARRTSPMLQEARVD-LIDLGLCNSTRWYNGRIR 179


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 2.2
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)

Query: 71 EKTDALKARMARLNAHTEEFDPKL---VTV 97
          EK  ALK   A L  + ++  P L    T+
Sbjct: 18 EK-QALKKLQASLKLYADDSAPALAIKATM 46


>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
          splicing, coiled coil, SH3 domain, endocytosis,
          structural genomics, NPPSFA; 2.49A {Homo sapiens}
          Length = 240

 Score = 25.5 bits (55), Expect = 3.4
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 61 QLNEELVAVSEKTDALKARMARLNAHTEEFDPKLVTVR 98
          +L++E + +  K D     +A + + T E+       R
Sbjct: 12 KLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYR 49


>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
           acyltransferase, phosphopantetheine, transfera; 2.59A
           {Saccharopolyspora erythraea}
          Length = 915

 Score = 24.5 bits (54), Expect = 7.8
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 69  VSEKT-DALKARMARLNAHTEEFDPKLVTVRFS 100
           VS ++  AL+A+ A++    E  D  L  V   
Sbjct: 451 VSARSTAALRAQAAQIAELLERPDADLAGVGLG 483


>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein;
          NMR {Mus musculus}
          Length = 168

 Score = 24.3 bits (52), Expect = 8.8
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 28 VKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMAR 82
           ++G+L  +   T+  C + LG+          +L   L  +++  +      AR
Sbjct: 32 ARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKL---LGEIAQGNENYAGIAAR 83


>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
           signaling protein; 2.04A {Bordetella pertussis} PDB:
           3mpl_A
          Length = 267

 Score = 24.2 bits (53), Expect = 9.5
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 12/55 (21%)

Query: 27  LVKEGELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMA 81
           +V  G+ DAV+   +             A     +     + ++   D   A +A
Sbjct: 175 MVANGQADAVVQTQI------------SASYYVNRYFAGKLRIASALDLPPAEIA 217


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,435,188
Number of extensions: 71631
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 16
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)