RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1980
         (100 letters)



>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 482

 Score = 29.7 bits (66), Expect = 0.052
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 41  LCNCLKQLGSVVSVAGDIFKQLNEELVAVSEKTDALKARMARLNAHTEEF 90
           L       G   ++AGDI K +      +   +  L+     L  +    
Sbjct: 419 LATEATDFGIAPALAGDIKKLVPP----ILTLSRKLQQDPEFLKQNPWTR 464


>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 95

 Score = 27.4 bits (61), Expect = 0.13
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 33 LDAVINNTLCNCLKQLGSVVSVAG----DIFKQLNEELVAVSEKTDALKARMARLNAHTE 88
          L +++ +        L  V S  G    D+ + + + L     + +  +  +    A  E
Sbjct: 10 LKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIE 69


>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 91

 Score = 26.7 bits (59), Expect = 0.23
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 33 LDAVINNTLCNCLKQLGSVVS---VAGDIFKQLNEELVAVSEKTDALKARMARLNAHTE 88
          ++ V +       K + + +     A  +  QL+E  +         K +++ L   T+
Sbjct: 10 VEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTD 68


>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 99

 Score = 23.2 bits (50), Expect = 4.8
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 58 IFKQLNEELVAVSEKTDALKARMARLNAHTEE 89
          I K+L   L+ V       K+ +   ++  +E
Sbjct: 44 ILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 75


>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
           [TaxId: 1423]}
          Length = 273

 Score = 23.3 bits (49), Expect = 7.5
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 1   MPFVVRTVQPKFLSRNNKLLDTAGSPLVKEGELDAVINNTLCNCLKQ 47
            P +  + Q   + +  +LLDT G    K  +    +   +   +K 
Sbjct: 143 RPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKD 189


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 22.9 bits (49), Expect = 9.8
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 31  GELDAVINNTLCNCLKQLGSVVSVAGDIFKQLNE 64
           G+ D    N++ N L  + +     G  +K  N 
Sbjct: 315 GQPDTSAGNSMLNVLTMMYAFCESTGVPYKSFNR 348


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,293
Number of extensions: 12028
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)