BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1987
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 36/55 (65%)

Query: 169 KREMRLLXXXXXXXXXXXXXXXYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223
           KRE+RL+               Y+K LENRVA+LENQNK LI+ELK+LK+LY  +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55


>pdb|1KDX|B Chain B, Kix Domain Of Mouse Cbp (Creb Binding Protein) In
          Complex With Phosphorylated Kinase Inducible Domain
          (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding
          Protein), Nmr 17 Structures
          Length = 28

 Score = 32.3 bits (72), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/20 (80%), Positives = 18/20 (90%), Gaps = 1/20 (5%)

Query: 55 KRRDITLTRRPSYRKILNDL 74
          KRR+I L+RRP YRKILNDL
Sbjct: 5  KRREI-LSRRPXYRKILNDL 23


>pdb|3BHN|A Chain A, Crystal Structure Of A Dj-1PFPI-Like Protein (Shew_2856)
           From Shewanella Loihica Pv-4 At 1.76 A Resolution
          Length = 236

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 48  DNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATG-KVESS----GSDCDDSNLDSELSS 102
           D  V   K +D+ L     YR I   L+     +  K++ S    GS C  S +  EL  
Sbjct: 72  DGHVSEVKEQDVVLITS-GYRGIPAALQDENFXSALKLDPSRQLIGSICAGSFVLHELGL 130

Query: 103 HSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTI 145
             L     T  P     L   GGD Q LP +   N ++AGG +
Sbjct: 131 --LKGKKLTTNPDAKAVLQGXGGDVQDLPLVIEGNIATAGGCL 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,060,914
Number of Sequences: 62578
Number of extensions: 223079
Number of successful extensions: 361
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)