Query psy1987
Match_columns 226
No_of_seqs 213 out of 891
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 21:17:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584|consensus 100.0 1.1E-53 2.5E-58 386.1 12.5 217 6-226 56-348 (348)
2 PF02173 pKID: pKID domain; I 99.7 2.5E-18 5.5E-23 115.7 -0.8 36 50-86 6-41 (41)
3 PF00170 bZIP_1: bZIP transcri 99.5 2.2E-13 4.8E-18 97.7 7.5 61 165-225 1-61 (64)
4 smart00338 BRLZ basic region l 99.4 5E-13 1.1E-17 96.0 8.3 59 167-225 3-61 (65)
5 PF07716 bZIP_2: Basic region 99.2 1.6E-10 3.5E-15 80.8 8.4 51 168-219 4-54 (54)
6 KOG4343|consensus 99.1 1.2E-09 2.5E-14 106.9 11.6 63 162-224 274-336 (655)
7 KOG0709|consensus 99.0 2.3E-10 4.9E-15 110.0 4.2 56 161-216 243-298 (472)
8 KOG4005|consensus 98.9 1.1E-08 2.4E-13 92.1 10.6 62 161-223 62-123 (292)
9 KOG0837|consensus 98.8 2E-08 4.4E-13 91.0 7.4 62 164-225 200-262 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 8.4E-09 1.8E-13 79.2 -4.3 60 165-224 26-85 (92)
11 KOG3119|consensus 98.1 7E-06 1.5E-10 74.2 7.6 62 164-225 189-250 (269)
12 KOG4571|consensus 98.0 2.1E-05 4.6E-10 72.4 8.6 62 164-225 222-283 (294)
13 KOG3863|consensus 97.6 5.2E-05 1.1E-09 75.6 4.5 55 169-223 490-544 (604)
14 KOG4196|consensus 97.1 0.0031 6.7E-08 52.5 8.3 58 167-224 51-108 (135)
15 KOG1414|consensus 97.1 7.6E-05 1.7E-09 70.6 -1.6 61 164-224 280-341 (395)
16 KOG1414|consensus 95.7 0.00031 6.8E-09 66.5 -6.3 62 163-224 148-213 (395)
17 KOG3584|consensus 92.0 1.1 2.4E-05 42.2 9.1 64 15-79 156-236 (348)
18 KOG3119|consensus 87.3 3.9 8.4E-05 37.3 8.6 63 162-224 190-256 (269)
19 PF06005 DUF904: Protein of un 86.5 1.7 3.8E-05 32.5 4.9 35 190-224 18-52 (72)
20 PF06156 DUF972: Protein of un 80.1 5 0.00011 32.1 5.4 35 190-224 22-56 (107)
21 PRK00888 ftsB cell division pr 80.0 4.9 0.00011 31.8 5.4 31 188-218 32-62 (105)
22 PF05377 FlaC_arch: Flagella a 78.7 4.8 0.0001 29.1 4.4 29 192-220 2-37 (55)
23 PRK00888 ftsB cell division pr 78.5 4.7 0.0001 31.9 4.8 34 192-225 29-62 (105)
24 PF01166 TSC22: TSC-22/dip/bun 78.2 3.9 8.5E-05 30.0 3.9 31 190-220 14-44 (59)
25 PRK13169 DNA replication intia 78.1 6.4 0.00014 31.8 5.5 34 190-223 22-55 (110)
26 PF12709 Kinetocho_Slk19: Cent 77.8 6.7 0.00014 30.7 5.4 34 188-221 40-73 (87)
27 PF03980 Nnf1: Nnf1 ; InterPr 77.5 4.1 8.8E-05 31.7 4.2 31 188-218 78-108 (109)
28 PRK10884 SH3 domain-containing 76.9 17 0.00037 32.1 8.4 34 190-223 125-158 (206)
29 PF08172 CASP_C: CASP C termin 76.8 7 0.00015 35.4 6.0 49 168-217 86-134 (248)
30 PF12808 Mto2_bdg: Micro-tubul 75.9 7.4 0.00016 27.8 4.7 26 193-218 25-50 (52)
31 PF01166 TSC22: TSC-22/dip/bun 75.7 5.8 0.00013 29.1 4.2 24 189-212 20-43 (59)
32 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.1 18 0.00039 29.2 7.5 45 172-216 87-131 (132)
33 PF04977 DivIC: Septum formati 74.5 8.7 0.00019 27.4 5.0 30 187-216 21-50 (80)
34 PF08826 DMPK_coil: DMPK coile 74.2 32 0.00068 25.2 7.9 50 175-224 10-59 (61)
35 PF08232 Striatin: Striatin fa 73.9 23 0.0005 29.1 7.9 51 172-222 14-64 (134)
36 PF04977 DivIC: Septum formati 73.5 12 0.00025 26.7 5.4 33 191-223 18-50 (80)
37 PF02183 HALZ: Homeobox associ 73.2 11 0.00024 25.8 4.9 27 193-219 15-41 (45)
38 PF06005 DUF904: Protein of un 72.9 13 0.00029 27.8 5.7 33 189-221 24-56 (72)
39 PF02183 HALZ: Homeobox associ 72.8 12 0.00025 25.7 4.9 32 194-225 9-40 (45)
40 TIGR02449 conserved hypothetic 70.3 10 0.00023 28.1 4.6 33 192-224 9-41 (65)
41 TIGR02449 conserved hypothetic 69.9 15 0.00033 27.2 5.4 31 193-223 3-33 (65)
42 PRK10884 SH3 domain-containing 68.1 35 0.00076 30.1 8.2 33 191-223 133-165 (206)
43 PF10205 KLRAQ: Predicted coil 67.4 64 0.0014 26.0 9.1 54 169-222 18-72 (102)
44 TIGR02894 DNA_bind_RsfA transc 66.9 26 0.00056 30.3 6.9 39 185-223 106-144 (161)
45 COG1382 GimC Prefoldin, chaper 66.9 17 0.00036 30.0 5.6 33 190-222 77-109 (119)
46 PF10226 DUF2216: Uncharacteri 64.6 49 0.0011 29.5 8.4 60 165-224 19-82 (195)
47 PHA03155 hypothetical protein; 64.2 9.6 0.00021 31.3 3.7 26 190-215 8-33 (115)
48 PRK14127 cell division protein 64.0 20 0.00044 28.9 5.5 31 191-221 31-61 (109)
49 PF13815 Dzip-like_N: Iguana/D 64.0 27 0.00059 27.7 6.2 35 192-226 82-116 (118)
50 PF05266 DUF724: Protein of un 63.1 46 0.001 29.0 8.0 27 174-200 94-120 (190)
51 PF07334 IFP_35_N: Interferon- 62.8 12 0.00026 28.6 3.8 25 200-224 3-27 (76)
52 KOG4797|consensus 62.7 17 0.00038 29.9 4.9 38 173-210 55-94 (123)
53 PF12711 Kinesin-relat_1: Kine 62.6 17 0.00036 28.4 4.6 33 189-221 30-68 (86)
54 PHA03162 hypothetical protein; 62.3 7.5 0.00016 32.7 2.8 29 186-214 9-37 (135)
55 PF00170 bZIP_1: bZIP transcri 62.2 27 0.00058 24.7 5.3 32 189-220 32-63 (64)
56 PF02403 Seryl_tRNA_N: Seryl-t 62.2 32 0.0007 26.3 6.2 52 172-223 48-100 (108)
57 TIGR02209 ftsL_broad cell divi 62.1 30 0.00066 25.2 5.8 32 187-218 28-59 (85)
58 PF05103 DivIVA: DivIVA protei 61.3 5 0.00011 31.4 1.5 35 190-224 25-59 (131)
59 PF15556 Zwint: ZW10 interacto 59.9 69 0.0015 29.2 8.5 49 173-221 117-172 (252)
60 KOG3335|consensus 59.8 35 0.00075 30.1 6.5 44 168-217 90-133 (181)
61 smart00338 BRLZ basic region l 59.8 28 0.00061 24.6 5.1 31 190-220 33-63 (65)
62 PF04728 LPP: Lipoprotein leuc 59.5 28 0.0006 25.3 4.9 34 191-224 4-37 (56)
63 PRK15422 septal ring assembly 59.3 23 0.0005 27.4 4.8 20 195-214 23-42 (79)
64 PF08172 CASP_C: CASP C termin 59.1 50 0.0011 30.0 7.7 40 185-224 88-127 (248)
65 smart00340 HALZ homeobox assoc 58.3 23 0.00049 24.6 4.1 23 197-219 12-34 (44)
66 PF05377 FlaC_arch: Flagella a 56.8 39 0.00086 24.4 5.3 32 191-222 15-46 (55)
67 KOG2483|consensus 56.2 30 0.00065 31.4 5.8 39 186-224 101-139 (232)
68 PF05529 Bap31: B-cell recepto 55.9 69 0.0015 27.1 7.7 32 188-219 159-190 (192)
69 COG1382 GimC Prefoldin, chaper 55.6 37 0.0008 28.0 5.7 40 186-225 66-105 (119)
70 PF15224 SCRG1: Scrapie-respon 54.9 5.6 0.00012 30.2 0.8 17 62-78 3-20 (78)
71 PF10186 Atg14: UV radiation r 54.8 1.1E+02 0.0023 26.8 8.9 20 194-213 74-93 (302)
72 PF08317 Spc7: Spc7 kinetochor 54.2 90 0.002 28.9 8.7 10 66-75 15-24 (325)
73 KOG4797|consensus 54.0 19 0.0004 29.7 3.7 32 189-220 66-97 (123)
74 COG2433 Uncharacterized conser 52.2 26 0.00056 36.2 5.1 34 191-224 423-456 (652)
75 PF11500 Cut12: Spindle pole b 52.2 1.5E+02 0.0032 25.4 9.0 58 165-222 80-137 (152)
76 KOG0709|consensus 52.2 15 0.00034 36.5 3.5 31 192-222 288-318 (472)
77 PF12999 PRKCSH-like: Glucosid 52.1 92 0.002 27.2 7.9 33 186-218 142-174 (176)
78 PF13851 GAS: Growth-arrest sp 52.0 1.4E+02 0.003 26.1 9.1 54 170-223 73-126 (201)
79 PF11932 DUF3450: Protein of u 51.9 1.3E+02 0.0027 26.7 9.0 41 184-224 50-90 (251)
80 TIGR03752 conj_TIGR03752 integ 51.6 26 0.00057 34.9 5.0 23 201-223 113-135 (472)
81 PRK13922 rod shape-determining 51.6 84 0.0018 28.0 7.8 32 189-220 75-109 (276)
82 PF10473 CENP-F_leu_zip: Leuci 50.8 1.3E+02 0.0028 25.3 8.3 51 173-223 35-85 (140)
83 KOG4571|consensus 50.8 99 0.0021 29.2 8.3 58 165-222 227-287 (294)
84 PF04102 SlyX: SlyX; InterPro 50.6 60 0.0013 23.7 5.6 19 190-208 4-22 (69)
85 PRK11239 hypothetical protein; 50.2 28 0.0006 31.5 4.5 31 191-221 184-214 (215)
86 PLN02320 seryl-tRNA synthetase 49.6 66 0.0014 32.3 7.5 51 172-222 112-162 (502)
87 KOG4196|consensus 48.4 26 0.00056 29.5 3.8 26 200-225 77-102 (135)
88 PF10224 DUF2205: Predicted co 48.4 61 0.0013 24.9 5.5 34 190-223 30-63 (80)
89 PRK04325 hypothetical protein; 48.1 62 0.0013 24.1 5.5 19 190-208 9-27 (74)
90 PRK00295 hypothetical protein; 48.1 64 0.0014 23.6 5.5 17 190-206 5-21 (68)
91 cd07429 Cby_like Chibby, a nuc 47.8 54 0.0012 26.6 5.4 25 199-223 81-105 (108)
92 PF04849 HAP1_N: HAP1 N-termin 47.7 33 0.00071 32.4 4.8 34 190-223 160-193 (306)
93 TIGR02209 ftsL_broad cell divi 47.6 68 0.0015 23.3 5.6 33 192-224 26-58 (85)
94 PF08912 Rho_Binding: Rho Bind 47.4 37 0.0008 25.6 4.1 29 196-224 2-30 (69)
95 PF08781 DP: Transcription fac 47.4 79 0.0017 26.8 6.6 36 168-209 6-44 (142)
96 PF15070 GOLGA2L5: Putative go 47.1 1.1E+02 0.0025 31.3 8.8 50 176-225 108-181 (617)
97 PTZ00454 26S protease regulato 47.0 79 0.0017 30.3 7.3 35 190-224 29-63 (398)
98 PF09726 Macoilin: Transmembra 46.8 96 0.0021 32.3 8.3 20 194-213 549-568 (697)
99 PF13863 DUF4200: Domain of un 46.4 1.4E+02 0.003 23.2 8.0 42 175-216 66-107 (126)
100 PRK02793 phi X174 lysis protei 46.1 70 0.0015 23.7 5.5 15 190-204 8-22 (72)
101 TIGR02894 DNA_bind_RsfA transc 45.8 47 0.001 28.8 5.1 20 199-218 113-132 (161)
102 PF07716 bZIP_2: Basic region 45.7 38 0.00082 23.3 3.8 27 199-225 27-53 (54)
103 PRK13922 rod shape-determining 45.0 50 0.0011 29.4 5.4 22 193-214 72-93 (276)
104 PRK04406 hypothetical protein; 44.8 74 0.0016 23.9 5.5 15 190-204 11-25 (75)
105 PRK00736 hypothetical protein; 44.5 78 0.0017 23.2 5.5 16 190-205 5-20 (68)
106 TIGR00414 serS seryl-tRNA synt 44.4 82 0.0018 30.4 7.1 51 172-222 49-101 (418)
107 PRK02119 hypothetical protein; 44.4 77 0.0017 23.6 5.5 15 190-204 9-23 (73)
108 PRK05431 seryl-tRNA synthetase 44.4 77 0.0017 30.6 6.9 50 173-222 48-98 (425)
109 PF05529 Bap31: B-cell recepto 44.2 1.1E+02 0.0023 25.9 7.0 38 188-225 152-189 (192)
110 PF01920 Prefoldin_2: Prefoldi 44.1 90 0.0019 23.2 5.9 29 193-221 72-100 (106)
111 PF08537 NBP1: Fungal Nap bind 44.0 1.5E+02 0.0032 28.4 8.5 59 165-223 118-201 (323)
112 PF07106 TBPIP: Tat binding pr 43.8 60 0.0013 27.0 5.3 25 194-218 113-137 (169)
113 PF08614 ATG16: Autophagy prot 43.0 1.5E+02 0.0033 25.3 7.8 22 189-210 129-150 (194)
114 PF11365 DUF3166: Protein of u 42.7 55 0.0012 26.1 4.6 30 192-221 17-46 (96)
115 PF07047 OPA3: Optic atrophy 3 42.3 69 0.0015 26.2 5.4 20 190-209 112-131 (134)
116 TIGR02338 gimC_beta prefoldin, 42.1 81 0.0018 24.6 5.6 31 193-223 77-107 (110)
117 PF12709 Kinetocho_Slk19: Cent 41.8 85 0.0019 24.6 5.5 36 188-223 47-82 (87)
118 PF14077 WD40_alt: Alternative 41.5 24 0.00052 24.9 2.2 22 189-210 17-38 (48)
119 PF11382 DUF3186: Protein of u 41.5 45 0.00097 30.9 4.6 33 191-223 33-65 (308)
120 KOG1029|consensus 41.2 1E+02 0.0022 33.2 7.5 22 202-223 435-456 (1118)
121 PF11471 Sugarporin_N: Maltopo 41.2 69 0.0015 23.2 4.6 31 194-224 29-59 (60)
122 PF07558 Shugoshin_N: Shugoshi 41.0 35 0.00076 23.3 2.9 41 172-213 4-44 (46)
123 PF06156 DUF972: Protein of un 40.8 66 0.0014 25.7 4.9 26 191-216 30-55 (107)
124 PF06785 UPF0242: Uncharacteri 40.3 1.2E+02 0.0027 29.5 7.4 52 173-224 109-161 (401)
125 PLN02678 seryl-tRNA synthetase 40.1 1E+02 0.0022 30.3 7.1 51 172-222 52-103 (448)
126 KOG4343|consensus 39.5 35 0.00076 34.9 3.8 37 188-224 307-343 (655)
127 COG3879 Uncharacterized protei 39.5 2E+02 0.0043 26.6 8.3 57 165-221 46-106 (247)
128 PF04999 FtsL: Cell division p 39.4 98 0.0021 23.3 5.5 27 192-218 44-70 (97)
129 PF10669 Phage_Gp23: Protein g 39.1 1.4E+02 0.0031 24.3 6.5 47 164-214 50-96 (121)
130 PF09006 Surfac_D-trimer: Lung 38.8 70 0.0015 22.5 4.1 24 201-224 3-26 (46)
131 cd00632 Prefoldin_beta Prefold 38.6 1E+02 0.0022 23.8 5.6 29 193-221 73-101 (105)
132 PF08232 Striatin: Striatin fa 38.4 1.3E+02 0.0029 24.7 6.5 52 165-216 20-72 (134)
133 PRK09343 prefoldin subunit bet 38.2 98 0.0021 24.9 5.6 26 196-221 84-109 (121)
134 PF12718 Tropomyosin_1: Tropom 38.0 69 0.0015 26.6 4.8 29 193-221 31-59 (143)
135 PF14257 DUF4349: Domain of un 38.0 1.5E+02 0.0032 26.2 7.3 50 172-221 144-193 (262)
136 PRK09413 IS2 repressor TnpA; R 37.9 79 0.0017 24.9 5.0 28 193-220 74-101 (121)
137 PF12072 DUF3552: Domain of un 37.8 2.7E+02 0.0058 24.0 8.6 11 190-200 99-109 (201)
138 cd00890 Prefoldin Prefoldin is 37.5 1.1E+02 0.0023 23.7 5.6 31 193-223 97-127 (129)
139 COG4026 Uncharacterized protei 37.3 2.2E+02 0.0048 26.5 8.2 10 112-121 42-51 (290)
140 PF04949 Transcrip_act: Transc 37.2 2.6E+02 0.0055 24.3 8.1 39 176-215 96-137 (159)
141 KOG1853|consensus 37.1 2.2E+02 0.0047 27.0 8.3 52 173-224 28-79 (333)
142 PF08961 DUF1875: Domain of un 37.1 11 0.00024 34.3 0.0 32 192-223 131-162 (243)
143 PF04999 FtsL: Cell division p 36.7 1.1E+02 0.0023 23.1 5.3 33 192-224 37-69 (97)
144 PF12711 Kinesin-relat_1: Kine 36.5 1E+02 0.0023 24.0 5.3 20 201-220 21-40 (86)
145 PRK14127 cell division protein 36.1 92 0.002 25.2 5.1 29 193-221 40-68 (109)
146 PRK13169 DNA replication intia 35.5 91 0.002 25.2 5.0 28 189-216 28-55 (110)
147 PF14916 CCDC92: Coiled-coil d 35.4 98 0.0021 22.7 4.7 34 191-224 4-41 (60)
148 COG2919 Septum formation initi 35.4 1.2E+02 0.0025 24.3 5.6 32 193-224 53-84 (117)
149 PF11629 Mst1_SARAH: C termina 35.3 1.1E+02 0.0023 21.8 4.7 30 192-224 10-39 (49)
150 KOG1656|consensus 35.3 1.4E+02 0.003 27.1 6.5 28 170-197 52-79 (221)
151 PF07795 DUF1635: Protein of u 35.3 1.5E+02 0.0033 26.7 6.8 45 173-217 16-60 (214)
152 PF14775 NYD-SP28_assoc: Sperm 35.2 1.3E+02 0.0029 21.6 5.3 31 191-222 28-58 (60)
153 PF11932 DUF3450: Protein of u 35.2 2.8E+02 0.0062 24.4 8.6 21 192-212 72-92 (251)
154 PF07412 Geminin: Geminin; In 35.2 57 0.0012 29.1 4.1 30 193-222 128-157 (200)
155 PF13747 DUF4164: Domain of un 35.1 2.1E+02 0.0045 22.0 8.2 57 167-223 9-65 (89)
156 PRK00846 hypothetical protein; 34.8 1.3E+02 0.0028 23.0 5.5 12 190-201 13-24 (77)
157 PRK11637 AmiB activator; Provi 34.4 2.5E+02 0.0054 26.7 8.6 8 192-199 77-84 (428)
158 PF09744 Jnk-SapK_ap_N: JNK_SA 33.9 3E+02 0.0065 23.5 8.3 11 200-210 99-109 (158)
159 KOG3156|consensus 33.5 1.1E+02 0.0023 27.9 5.5 35 188-222 107-141 (220)
160 PF10211 Ax_dynein_light: Axon 33.4 3E+02 0.0065 23.8 8.2 28 193-220 123-150 (189)
161 PHA02109 hypothetical protein 33.2 1.1E+02 0.0023 27.5 5.4 36 187-222 190-225 (233)
162 PF08614 ATG16: Autophagy prot 33.1 3.1E+02 0.0067 23.4 8.6 9 66-74 25-33 (194)
163 PF01763 Herpes_UL6: Herpesvir 33.0 86 0.0019 32.0 5.4 35 190-224 370-404 (557)
164 PRK15422 septal ring assembly 33.0 1.2E+02 0.0026 23.5 5.0 11 192-202 27-37 (79)
165 PF05300 DUF737: Protein of un 32.5 1.7E+02 0.0038 25.7 6.6 48 175-222 119-166 (187)
166 PRK12704 phosphodiesterase; Pr 31.9 2.8E+02 0.006 27.8 8.7 10 176-185 81-90 (520)
167 PRK14872 rod shape-determining 31.5 67 0.0015 30.7 4.2 21 200-220 60-80 (337)
168 KOG1318|consensus 31.4 96 0.0021 30.5 5.3 37 186-222 286-322 (411)
169 KOG4005|consensus 31.2 1.2E+02 0.0026 28.3 5.6 16 192-207 99-114 (292)
170 PHA02562 46 endonuclease subun 31.0 2.2E+02 0.0048 27.4 7.7 29 192-220 360-388 (562)
171 PF10883 DUF2681: Protein of u 30.9 1.5E+02 0.0033 23.1 5.3 27 196-222 29-55 (87)
172 KOG0982|consensus 30.8 3.1E+02 0.0067 27.6 8.6 34 191-224 298-331 (502)
173 PF10805 DUF2730: Protein of u 30.5 2.7E+02 0.0058 21.9 6.9 15 187-201 46-60 (106)
174 COG1792 MreC Cell shape-determ 30.3 83 0.0018 28.9 4.4 25 190-214 83-107 (284)
175 PF07047 OPA3: Optic atrophy 3 30.0 1E+02 0.0023 25.1 4.6 26 193-218 108-133 (134)
176 PF13815 Dzip-like_N: Iguana/D 29.8 1.3E+02 0.0028 23.9 5.0 28 192-219 89-116 (118)
177 PF06903 VirK: VirK protein; 29.8 86 0.0019 25.1 3.9 75 65-153 4-86 (100)
178 PF01920 Prefoldin_2: Prefoldi 29.7 1.7E+02 0.0037 21.7 5.4 30 192-221 64-93 (106)
179 PRK13923 putative spore coat p 29.7 1.4E+02 0.0029 26.1 5.4 36 189-224 110-145 (170)
180 COG3074 Uncharacterized protei 29.7 1.3E+02 0.0029 23.1 4.7 17 201-217 50-66 (79)
181 PF14645 Chibby: Chibby family 29.6 1.3E+02 0.0027 24.4 4.9 23 199-221 80-102 (116)
182 PF15397 DUF4618: Domain of un 29.6 2.5E+02 0.0054 26.0 7.4 18 58-75 41-58 (258)
183 PF05278 PEARLI-4: Arabidopsis 29.5 4E+02 0.0086 24.9 8.7 36 189-224 206-241 (269)
184 PF07888 CALCOCO1: Calcium bin 29.5 3E+02 0.0065 28.2 8.5 8 190-197 171-178 (546)
185 cd00632 Prefoldin_beta Prefold 29.4 1.9E+02 0.0041 22.2 5.7 25 192-216 79-103 (105)
186 PF13600 DUF4140: N-terminal d 29.2 1.7E+02 0.0036 22.2 5.4 24 192-215 79-102 (104)
187 TIGR00219 mreC rod shape-deter 29.1 82 0.0018 28.8 4.2 10 202-211 96-105 (283)
188 PF04156 IncA: IncA protein; 29.1 3.4E+02 0.0073 22.5 8.4 28 183-210 123-150 (191)
189 PF13805 Pil1: Eisosome compon 28.7 2.3E+02 0.0049 26.5 7.0 27 191-217 166-192 (271)
190 COG4372 Uncharacterized protei 28.6 4.2E+02 0.009 26.6 9.0 47 174-220 128-174 (499)
191 COG4026 Uncharacterized protei 28.1 1.3E+02 0.0029 27.9 5.3 11 140-150 55-65 (290)
192 PF08317 Spc7: Spc7 kinetochor 27.8 2.6E+02 0.0057 25.8 7.4 29 191-219 231-259 (325)
193 PF08826 DMPK_coil: DMPK coile 27.3 1.8E+02 0.004 21.2 5.0 29 190-218 32-60 (61)
194 cd00584 Prefoldin_alpha Prefol 27.3 1.9E+02 0.0042 22.6 5.6 31 193-223 97-127 (129)
195 PF06698 DUF1192: Protein of u 27.2 1.2E+02 0.0027 22.0 4.0 24 192-215 23-46 (59)
196 KOG0977|consensus 27.0 1.4E+02 0.0031 30.4 5.7 37 182-218 34-77 (546)
197 PF01486 K-box: K-box region; 26.9 2.9E+02 0.0062 21.0 7.0 45 169-213 49-98 (100)
198 COG3074 Uncharacterized protei 26.9 1.3E+02 0.0027 23.2 4.1 23 192-214 20-42 (79)
199 PRK10803 tol-pal system protei 26.7 1.2E+02 0.0026 27.3 4.8 32 193-224 57-88 (263)
200 PF09766 FimP: Fms-interacting 26.5 1.8E+02 0.0038 27.6 6.0 39 185-223 103-141 (355)
201 KOG1962|consensus 26.5 1.1E+02 0.0023 27.7 4.4 7 69-75 30-36 (216)
202 PF03670 UPF0184: Uncharacteri 26.4 1.9E+02 0.0041 22.6 5.1 32 191-222 41-72 (83)
203 PRK09413 IS2 repressor TnpA; R 26.3 1.1E+02 0.0025 24.0 4.1 23 192-214 80-102 (121)
204 PF14662 CCDC155: Coiled-coil 26.3 2.8E+02 0.0061 24.7 6.8 47 176-223 82-128 (193)
205 PF04568 IATP: Mitochondrial A 26.1 3.4E+02 0.0074 21.6 7.3 11 209-219 88-98 (100)
206 PF11365 DUF3166: Protein of u 25.9 2.1E+02 0.0045 22.8 5.4 36 190-225 8-43 (96)
207 PF09728 Taxilin: Myosin-like 25.8 5.4E+02 0.012 23.9 9.0 61 165-225 247-307 (309)
208 COG4467 Regulator of replicati 25.6 1.3E+02 0.0028 24.8 4.2 31 192-222 24-54 (114)
209 PRK13729 conjugal transfer pil 25.4 1.1E+02 0.0024 30.7 4.6 38 189-226 75-112 (475)
210 COG4860 Uncharacterized protei 25.2 20 0.00043 31.0 -0.5 21 66-86 25-45 (170)
211 PF07544 Med9: RNA polymerase 25.2 1.6E+02 0.0036 22.1 4.6 26 199-224 54-79 (83)
212 PF14645 Chibby: Chibby family 25.1 1.3E+02 0.0027 24.4 4.2 25 193-217 81-105 (116)
213 PF10211 Ax_dynein_light: Axon 25.1 4E+02 0.0087 23.0 7.6 13 211-223 170-182 (189)
214 PF10779 XhlA: Haemolysin XhlA 25.0 2.6E+02 0.0055 20.3 5.5 28 190-217 20-47 (71)
215 PF03993 DUF349: Domain of Unk 24.7 2.5E+02 0.0055 19.7 6.3 34 181-214 11-44 (77)
216 PRK09039 hypothetical protein; 24.7 4E+02 0.0086 25.1 8.0 45 170-220 137-181 (343)
217 TIGR02338 gimC_beta prefoldin, 24.6 2.4E+02 0.0053 21.9 5.6 26 190-215 81-106 (110)
218 PF02996 Prefoldin: Prefoldin 24.3 1.9E+02 0.004 22.1 4.9 31 193-223 87-117 (120)
219 PF07412 Geminin: Geminin; In 24.2 2.7E+02 0.0058 24.9 6.4 29 190-218 132-160 (200)
220 TIGR00993 3a0901s04IAP86 chlor 23.9 1.6E+02 0.0034 31.3 5.6 41 179-221 420-460 (763)
221 smart00787 Spc7 Spc7 kinetocho 23.8 5E+02 0.011 24.4 8.4 11 192-202 227-237 (312)
222 PF09726 Macoilin: Transmembra 23.8 3.5E+02 0.0077 28.2 8.0 28 195-222 543-570 (697)
223 PF08606 Prp19: Prp19/Pso4-lik 23.7 2.4E+02 0.0052 21.4 5.1 31 192-222 10-40 (70)
224 COG3599 DivIVA Cell division i 23.5 2E+02 0.0043 25.7 5.4 34 190-223 30-63 (212)
225 KOG1318|consensus 23.5 5.3E+02 0.011 25.5 8.7 19 207-225 300-318 (411)
226 PF06943 zf-LSD1: LSD1 zinc fi 23.5 46 0.001 20.4 1.0 10 5-14 5-14 (25)
227 TIGR00293 prefoldin, archaeal 23.1 2.6E+02 0.0056 21.8 5.6 29 193-221 96-124 (126)
228 PF07334 IFP_35_N: Interferon- 22.8 2.1E+02 0.0046 21.9 4.7 31 192-222 2-32 (76)
229 KOG0250|consensus 22.8 3.9E+02 0.0085 29.6 8.3 61 166-226 368-430 (1074)
230 PF07106 TBPIP: Tat binding pr 22.8 1.4E+02 0.0029 24.8 4.1 25 200-224 112-136 (169)
231 smart00340 HALZ homeobox assoc 22.8 2.3E+02 0.0049 19.7 4.4 29 196-224 4-32 (44)
232 COG5509 Uncharacterized small 22.8 1.6E+02 0.0035 22.0 3.9 23 192-214 27-49 (65)
233 KOG1398|consensus 22.5 43 0.00093 33.1 1.1 21 62-82 401-421 (460)
234 PF04899 MbeD_MobD: MbeD/MobD 22.4 3.1E+02 0.0067 20.5 5.5 29 194-222 32-60 (70)
235 PF09727 CortBP2: Cortactin-bi 22.4 5.3E+02 0.011 22.9 7.8 28 169-198 94-121 (192)
236 PF10883 DUF2681: Protein of u 22.0 1.4E+02 0.003 23.4 3.6 20 200-219 26-45 (87)
237 TIGR00219 mreC rod shape-deter 22.0 1.8E+02 0.0039 26.6 5.1 17 205-221 92-108 (283)
238 PF10226 DUF2216: Uncharacteri 22.0 2.4E+02 0.0053 25.2 5.6 47 174-224 95-142 (195)
239 PF09738 DUF2051: Double stran 21.8 1.5E+02 0.0032 27.8 4.5 32 195-226 217-248 (302)
240 COG2433 Uncharacterized conser 21.6 5.9E+02 0.013 26.7 8.9 31 189-219 435-465 (652)
241 PHA02562 46 endonuclease subun 21.5 4.3E+02 0.0093 25.5 7.7 31 189-219 364-394 (562)
242 PF12999 PRKCSH-like: Glucosid 21.4 5.2E+02 0.011 22.6 7.5 24 202-225 151-174 (176)
243 PF09325 Vps5: Vps5 C terminal 21.4 3E+02 0.0065 23.3 6.0 35 188-222 29-63 (236)
244 PRK05771 V-type ATP synthase s 21.4 2.6E+02 0.0057 28.2 6.5 34 190-223 93-126 (646)
245 PF02344 Myc-LZ: Myc leucine z 21.1 2.5E+02 0.0055 18.3 4.1 25 195-219 6-30 (32)
246 PF06305 DUF1049: Protein of u 21.0 1.4E+02 0.003 20.8 3.3 7 199-205 57-63 (68)
247 PF03961 DUF342: Protein of un 20.5 6E+02 0.013 24.5 8.5 36 188-223 373-408 (451)
248 PF14915 CCDC144C: CCDC144C pr 20.4 1.5E+02 0.0031 28.3 4.1 28 199-226 273-300 (305)
249 COG2919 Septum formation initi 20.4 1.6E+02 0.0035 23.5 3.9 27 193-219 60-86 (117)
250 PRK03947 prefoldin subunit alp 20.1 2.9E+02 0.0062 22.1 5.4 16 60-75 32-47 (140)
No 1
>KOG3584|consensus
Probab=100.00 E-value=1.1e-53 Score=386.09 Aligned_cols=217 Identities=45% Similarity=0.699 Sum_probs=189.6
Q ss_pred ceeeeecce------EEEeccCeeecCCCceeeEE--Eee-ccCCCCCcccccccccccccccccccCchHHHHh-hhcc
Q psy1987 6 PLLVYPFDA------TLYCSQPELDQSYTYLSSRQ--VVD-GASDDSLSAEDNDVKRSKRRDITLTRRPSYRKIL-NDLR 75 (226)
Q Consensus 6 ~~~~~p~~~------~~~~~~p~i~~~~~~iqtvQ--v~~-~~sdds~~~~d~~~~~~k~r~~iLsRRPSYRKIl-nels 75 (226)
-|++||.|+ ||..++|++|+++ ++|+|| |.. +++++|+++.|.+-.++ +|++||+||||||||| |+|+
T Consensus 56 tl~~lptg~t~~~qgv~~tp~~~viqsp-q~~~v~~qvs~~~~~~~sq~Ss~ri~~Sq-~~~~ila~rpsy~~~l~~~i~ 133 (348)
T KOG3584|consen 56 TLVQLPTGQTVMVQGVIQTPQSSVIQSP-QTQTVQRQVSPIAESEESQESSDRILDSQ-KRREILARRPSYRKILGNDIS 133 (348)
T ss_pred EeecCCCcceeeecccccCCcchhhcch-hhhhhhcccCCCCCChhhhcccccccccc-cchhhhccCchhccccccccc
Confidence 378999999 6677888899987 699997 755 69999999988666555 5555699999999999 9999
Q ss_pred ccccccCccccCCCCCCCCCCCCccccCCCCc------------ceeeecCCCcccccCCC-CCCCccceecccCC---C
Q psy1987 76 GAEIATGKVESSGSDCDDSNLDSELSSHSLPT------------HYQTVIPAGHIHLSSQG-GDHQTLPTITMTNA---S 139 (226)
Q Consensus 76 s~~~~~~~~~e~~~~~~~~~~~~~~~~~~~p~------------~y~~i~p~g~~ql~~~g-~g~qgl~~lt~~~~---~ 139 (226)
|+.+++.++++++.|+ +....+|++|++|+ +|++|.++|+|+++++| +|+||+++|||+|+ .
T Consensus 134 S~~p~v~~~~~~~~e~--~~~~~ai~~~s~P~~~i~~~tS~G~~qqi~i~~gg~~~~~~pgs~gvqglq~~~~T~S~~s~ 211 (348)
T KOG3584|consen 134 SDAPGVTRIEEENGEE--ETFSAAIATVSVPTGSIGYQTSSGGPQQIAIAQGGTIQLANPGSDGVQGLQTLTMTNSGPST 211 (348)
T ss_pred ccCCCCCccccccccc--cccchhheeeecCCCcceeeecCCCceeeeecCCCccccCCCCCCccccccccCcccCCCCC
Confidence 9999999999988776 33456888999987 57789999999999999 99999999999994 4
Q ss_pred CCCCceeeec---CCC--ccccCCC---------------------------------------------CCCCccHHHH
Q psy1987 140 SAGGTIVQYS---QDG--QFFVPSE---------------------------------------------IGTGEDQSRK 169 (226)
Q Consensus 140 ~~g~tivq~a---~dg--q~~vp~~---------------------------------------------~~~~ee~e~K 169 (226)
++|.+|+||. .|| +|++|.+ ++..||..+|
T Consensus 212 Q~~~t~Lq~~a~~~~~~~qi~~p~~qv~~~q~atgd~qs~~i~tg~sssps~tl~pg~~~~~~~~~ltsp~~~aee~trK 291 (348)
T KOG3584|consen 212 QQGTTILQYTAQTIDGAQQILVPSNQVVVPQAATGDMQSYQIRTGYSSSPSATLTPGVVMMGSPSYLTSPTQGAEEATRK 291 (348)
T ss_pred CCceeeEeecccccccceeeeccccceeecccccCcccchhhcccccCCCccccCCceEEecCcccccCCCccchhhhhH
Confidence 6899999995 577 6888875 0235888999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987 170 REMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 226 (226)
Q Consensus 170 rerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~~ 226 (226)
|+.||+|||+||++||+|||||++|||++|+.||++|+.|++||+.||++|||++.+
T Consensus 292 RevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~k~~d 348 (348)
T KOG3584|consen 292 REVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCHKSKD 348 (348)
T ss_pred HHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999999999864
No 2
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=99.68 E-value=2.5e-18 Score=115.67 Aligned_cols=36 Identities=44% Similarity=0.651 Sum_probs=21.2
Q ss_pred ccccccccccccccCchHHHHhhhccccccccCcccc
Q psy1987 50 DVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVES 86 (226)
Q Consensus 50 ~~~~~k~r~~iLsRRPSYRKIlnelss~~~~~~~~~e 86 (226)
+.+++ ||++||+||||||||||||||++++.++++|
T Consensus 6 ~~~~~-krReiLsRRPSYRKIlndLs~~~~~~~k~~e 41 (41)
T PF02173_consen 6 EEDSQ-KRREILSRRPSYRKILNDLSSEDTGIPKGEE 41 (41)
T ss_dssp --HHH-HHHHHHTTSTHHHHHHHHHHHH---------
T ss_pred ccchH-HHHHHHhhCchHHHHHHHhcccccccCcCCC
Confidence 34444 5555699999999999999999999887653
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.46 E-value=2.2e-13 Score=97.72 Aligned_cols=61 Identities=41% Similarity=0.562 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
++..++.+|+++||+||++||.|||.|+.+||.++..|+.+|..|..++..|+.++..|+.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999999999999999999999999999998874
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=99.44 E-value=5e-13 Score=95.99 Aligned_cols=59 Identities=36% Similarity=0.453 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 167 SRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+.|+.+|+++||+||++||.||+.|+..||.++..|+.+|..|..++..|+.++..|++
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999998875
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.18 E-value=1.6e-10 Score=80.77 Aligned_cols=51 Identities=41% Similarity=0.532 Sum_probs=46.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 168 ~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
.++.+|. |||+||++||.|||+++..|+.++..|+.+|..|..++..|+.+
T Consensus 4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666 99999999999999999999999999999999999999999864
No 6
>KOG4343|consensus
Probab=99.06 E-value=1.2e-09 Score=106.87 Aligned_cols=63 Identities=37% Similarity=0.459 Sum_probs=58.7
Q ss_pred CCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 162 TGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 162 ~~ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+|.+..||+.|++|||++|..+|+|||||+..||.++..|..||..|+.|+..||.++.-+.
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 468889999999999999999999999999999999999999999999999999999886553
No 7
>KOG0709|consensus
Probab=99.01 E-value=2.3e-10 Score=109.96 Aligned_cols=56 Identities=39% Similarity=0.600 Sum_probs=44.4
Q ss_pred CCCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 161 GTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 161 ~~~ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
++.||+..||.||++||+.+|+++|+|||+||++||.+|.....+|++|.+++..|
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L 298 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL 298 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH
Confidence 45689999999999999999999999999999999999765444444444444333
No 8
>KOG4005|consensus
Probab=98.90 E-value=1.1e-08 Score=92.15 Aligned_cols=62 Identities=29% Similarity=0.307 Sum_probs=54.3
Q ss_pred CCCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 161 GTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 161 ~~~ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.|+ ..++|-.||++|||+||+-+|.|||+++.+||..+..|+.+|..|..++..|++....|
T Consensus 62 ~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 62 DHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred ccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 45678999999999999999999999999999999999999999999988888765543
No 9
>KOG0837|consensus
Probab=98.76 E-value=2e-08 Score=90.99 Aligned_cols=62 Identities=42% Similarity=0.591 Sum_probs=55.9
Q ss_pred ccHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 164 EDQSR-KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 164 ee~e~-KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
++++. |-+|.++|||+||.|||+||.++|..||.+|..|..+|..|-.++..|++++.++|+
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44444 455668999999999999999999999999999999999999999999999999886
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.41 E-value=8.4e-09 Score=79.21 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
-...|..||..|||.||+.||.||++.+..||.++..|..+...|..++..|+.+...++
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk 85 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999998877766666666666665554443
No 11
>KOG3119|consensus
Probab=98.14 E-value=7e-06 Score=74.19 Aligned_cols=62 Identities=29% Similarity=0.366 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+.+..+...|+.||-+||++||.+.|....++..++..|+.||..|+.++..|+.++.+++.
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999988763
No 12
>KOG4571|consensus
Probab=98.03 E-value=2.1e-05 Score=72.42 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
...+.+..|.+..|++||.+-|+|||...+.|+.+...|+..|.+|+.++..|..++.-+|+
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666668899999999999999999999999999999999999999999999987774
No 13
>KOG3863|consensus
Probab=97.63 E-value=5.2e-05 Score=75.59 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=45.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+-.||+=|||+||+.||+||-+.|..||..+..|.++..+|+.|-..+...+..+
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~ 544 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVM 544 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999998888876655555444433
No 14
>KOG4196|consensus
Probab=97.10 E-value=0.0031 Score=52.54 Aligned_cols=58 Identities=31% Similarity=0.318 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 167 SRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+|.+||-+|||=-|+-||-|+-..-.+||.+...|..+...|++++..++.++..++
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999888777777777777777776665554
No 15
>KOG1414|consensus
Probab=97.07 E-value=7.6e-05 Score=70.65 Aligned_cols=61 Identities=34% Similarity=0.513 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALI-DELKSLKELYCQQE 224 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~-~el~~Lk~~~~qlk 224 (226)
++...++.+.++|||.||.+||+|||.|+..|+.+...+..+|..|. .++..|+..+.+++
T Consensus 280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLS 341 (395)
T ss_pred CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhc
Confidence 44445558889999999999999999999999999999999999998 88888888877654
No 16
>KOG1414|consensus
Probab=95.72 E-value=0.00031 Score=66.53 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy1987 163 GEDQSRKREMRLLKNREAAKE---CRRKKKEYIKCLENRVAILE-NQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 163 ~ee~e~KrerRl~KNR~AA~k---cR~RKKeyi~~LE~~v~~Le-~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+.+.|+..|++||++||.+ ||.|++++...|+.+++.|+ ..|..|..++..|+++..++.
T Consensus 148 ~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~ 213 (395)
T KOG1414|consen 148 TPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE 213 (395)
T ss_pred CCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence 356678999999999999999 99999999999999999999 888888777777777666553
No 17
>KOG3584|consensus
Probab=92.02 E-value=1.1 Score=42.22 Aligned_cols=64 Identities=13% Similarity=0.016 Sum_probs=40.8
Q ss_pred EEEeccCe----eecCCCceeeE--------EEeeccCCCCC-----cccccccccccccccccccCchHHHHhhhcccc
Q psy1987 15 TLYCSQPE----LDQSYTYLSSR--------QVVDGASDDSL-----SAEDNDVKRSKRRDITLTRRPSYRKILNDLRGA 77 (226)
Q Consensus 15 ~~~~~~p~----i~~~~~~iqtv--------Qv~~~~sdds~-----~~~d~~~~~~k~r~~iLsRRPSYRKIlnelss~ 77 (226)
+.++++|- +||+.|+-|-| |.+.-.+|--+ ...-++++.++.+-| |.+||+|.+|+-+++..
T Consensus 156 i~~~s~P~~~i~~~tS~G~~qqi~i~~gg~~~~~~pgs~gvqglq~~~~T~S~~s~Q~~~t~-Lq~~a~~~~~~~qi~~p 234 (348)
T KOG3584|consen 156 IATVSVPTGSIGYQTSSGGPQQIAIAQGGTIQLANPGSDGVQGLQTLTMTNSGPSTQQGTTI-LQYTAQTIDGAQQILVP 234 (348)
T ss_pred heeeecCCCcceeeecCCCceeeeecCCCccccCCCCCCccccccccCcccCCCCCCCceee-Eeecccccccceeeecc
Confidence 77888885 89999866554 32211122111 111123456777877 99999999999999866
Q ss_pred cc
Q psy1987 78 EI 79 (226)
Q Consensus 78 ~~ 79 (226)
..
T Consensus 235 ~~ 236 (348)
T KOG3584|consen 235 SN 236 (348)
T ss_pred cc
Confidence 43
No 18
>KOG3119|consensus
Probab=87.25 E-value=3.9 Score=37.26 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=50.5
Q ss_pred CCccHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 162 TGEDQSRKREMR----LLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 162 ~~ee~e~KrerR----l~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+++.+.|++| ..|-|.+++.--..-+.++..||.+.+.|..++.+|+.++..|+..+.++-
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555554444 557777777766888889999999999999999999999999999987653
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.52 E-value=1.7 Score=32.51 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.+..|+.+++.|..+|..|.++...|+.+..+|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555555566666665555555555555555554
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.05 E-value=5 Score=32.14 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+..|...+..|..+|..|+-|+..|++.+.++.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888999999999999999887653
No 21
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.98 E-value=4.9 Score=31.80 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
.+..+..++.+++.|+.+|..|..++..|++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445566666677777777777777777765
No 22
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=78.68 E-value=4.8 Score=29.09 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=15.0
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAI-------LENQNKALIDELKSLKELY 220 (226)
Q Consensus 192 i~~LE~~v~~-------Le~eN~~L~~el~~Lk~~~ 220 (226)
+++||+++.. ++++|..|++.+..+.+-+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666554 4455555555555544433
No 23
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.47 E-value=4.7 Score=31.93 Aligned_cols=34 Identities=15% Similarity=-0.002 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
...++.+++.++.+|.+|+.++..|++++..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566666677777777777777777777666653
No 24
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.19 E-value=3.9 Score=29.97 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+.++.|-+++..|+.+|..|..|+..||...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666667777777777777777776643
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.07 E-value=6.4 Score=31.85 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
..+..|...+..|..+|..|+-|+..|++.+..+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777778888888888988888888888765
No 26
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=77.78 E-value=6.7 Score=30.75 Aligned_cols=34 Identities=44% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
||.|-...+.++..|+.+|..|..++..|+..+.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888888888888888877654
No 27
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=77.55 E-value=4.1 Score=31.69 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
|+..++.|..++..++.+|..|.+++..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999999988875
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.92 E-value=17 Score=32.09 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.+..++..+..|+++|++|++++..++.++..+
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555667777777777777776666544
No 29
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.78 E-value=7 Score=35.44 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 168 ~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
..|.|++.||.+==.+. ++-+..+..|..+++.|...|-.|=+++..|+
T Consensus 86 sQRDRFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888885533332 23334455566666666666666666655554
No 30
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=75.93 E-value=7.4 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
.....++..|+.+|..|+.+|..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566788899999999999987764
No 31
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.72 E-value=5.8 Score=29.09 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDE 212 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~e 212 (226)
|+.|.+|+.++..|+.||.-|+..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999888764
No 32
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.06 E-value=18 Score=29.24 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=30.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 172 MRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 172 rRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
..+..++.++..-+..=...+..++.+++.|..+|+-|..+|..|
T Consensus 87 ~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 87 AELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555556667777788888888888888877654
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.48 E-value=8.7 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
..+..+..|+.+++.|..+|..|..+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888888888888888888777
No 34
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.16 E-value=32 Score=25.17 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+|.+.+.+.-=.|=|.-...++.++...+..|..|..++..|+.++..+.
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555566667788888888888888888888888876543
No 35
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=73.92 E-value=23 Score=29.14 Aligned_cols=51 Identities=27% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 172 MRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 172 rRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.|.+|.|.++---|.==|.+|..||.+...+++-|..|...++.|.-.+.+
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887788888888888888888888888888887766554
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.54 E-value=12 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.+..+..++..|+.++..|..++..|+.++..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677778888888888888888888888777
No 37
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.17 E-value=11 Score=25.85 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
+.|-.....|..+|..|+.++..|+..
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555544
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.86 E-value=13 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+..++.|..+...|..+|..|..++..|++...
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666665543
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.76 E-value=12 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 194 CLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
-|-...+.|..+|..|..++..|+.++..|+.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999999887763
No 40
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=70.26 E-value=10 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
++.|=..+..|..+|..|++++..++.+-.+|.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455677777777777777777666654
No 41
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.92 E-value=15 Score=27.23 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.||.+++.|-.....|+.++..|+++...+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~ 33 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTW 33 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.07 E-value=35 Score=30.15 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.+.+|+.+.+.|.+++..++.++..|+.++..+
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444443
No 43
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.39 E-value=64 Score=25.97 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 169 KREMRLLKNREAAKECRRKKKE-YIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKe-yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
|+----+..+-+.-+..-|.|+ -+..+|.+++.|...|..|...+..|++++..
T Consensus 18 KKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 18 KKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555 78899999999999999999999999998874
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.94 E-value=26 Score=30.34 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 185 RRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 185 R~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.++.+..+..|..+++.|+.+|..|.+++..+++.|.-|
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777777766544
No 45
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=66.92 E-value=17 Score=30.00 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
++.+.||.++..|+++-..|.++++.|++.+..
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888888888888777654
No 46
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=64.60 E-value=49 Score=29.50 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEY----IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKey----i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.-.+|.||.+-.++++-.-+.+=..- ++..=.++..|...|+.|.++++.|++++|-|-
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344577888888888877666443322 233334467899999999999999999999663
No 47
>PHA03155 hypothetical protein; Provisional
Probab=64.25 E-value=9.6 Score=31.32 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKS 215 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~ 215 (226)
.-+++|+.++..|+-||+.|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34789999999999999999988743
No 48
>PRK14127 cell division protein GpsB; Provisional
Probab=64.04 E-value=20 Score=28.94 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+++.+-..++.|..+|..|++++..|+..+.
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 49
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=63.99 E-value=27 Score=27.75 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQEME 226 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~~ 226 (226)
+..|+.++..+..++..|+..++.+.+++..+|.|
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666667777777777777777777776666643
No 50
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.13 E-value=46 Score=29.02 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 174 LLKNREAAKECRRKKKEYIKCLENRVA 200 (226)
Q Consensus 174 l~KNR~AA~kcR~RKKeyi~~LE~~v~ 200 (226)
++.+.++-+.++.+.++..++||.++.
T Consensus 94 RL~kLL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 94 RLNKLLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555554
No 51
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=62.84 E-value=12 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..|..+|..|+.+++.|+.++.+++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776666665543
No 52
>KOG4797|consensus
Probab=62.75 E-value=17 Score=29.90 Aligned_cols=38 Identities=37% Similarity=0.367 Sum_probs=22.1
Q ss_pred HHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 173 RLLKNRE--AAKECRRKKKEYIKCLENRVAILENQNKALI 210 (226)
Q Consensus 173 Rl~KNR~--AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~ 210 (226)
-+.|+-+ |.++-=.-=|+.|.+|++++..|+.||.-|+
T Consensus 55 DLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 55 DLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 5554445555666666666666666665554
No 53
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.56 E-value=17 Score=28.41 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=23.3
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRV------AILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 189 Keyi~~LE~~v------~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
++-|+.|..+| ...-.+|..|++++..|+..+.
T Consensus 30 ~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 30 KEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666654 3566788888888888888764
No 54
>PHA03162 hypothetical protein; Provisional
Probab=62.32 E-value=7.5 Score=32.70 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~ 214 (226)
-++..-+++|..++..|+-||+.|+.++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999884
No 55
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=62.25 E-value=27 Score=24.65 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
...+..|+.+...|..++..|..++..|+.++
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888889999999999999998888764
No 56
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.23 E-value=32 Score=26.34 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 172 MRLLKNREAAKECRRKKK-EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 172 rRl~KNR~AA~kcR~RKK-eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.|..||.+|..=...++. +..+.|-.++..+..+...|..++..+.+.+..+
T Consensus 48 lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 48 LRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888665544443 4677777777777777777777777777666543
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=62.12 E-value=30 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
.....+..++.+.+.++.+|..|+.|+..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445677777788888888888888777654
No 58
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.35 E-value=5 Score=31.40 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.|++.|...+..|..+|..|..++..|+..+..++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57788888888888888888888877776665543
No 59
>PF15556 Zwint: ZW10 interactor
Probab=59.87 E-value=69 Score=29.24 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=23.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy1987 173 RLLKNREAAKECRRKKKEYIKCLENRVAILENQN-------KALIDELKSLKELYC 221 (226)
Q Consensus 173 Rl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN-------~~L~~el~~Lk~~~~ 221 (226)
-++|+|+|-.+-......++.+|....+.+.... ..|..++..|+.+.+
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~ 172 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAG 172 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444333345555655555444333 334444444444444
No 60
>KOG3335|consensus
Probab=59.82 E-value=35 Score=30.10 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 168 ~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
-+|..|.++++ -.+.+..+.+|+.++..|+++..+|...+..|.
T Consensus 90 y~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 90 YWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665 344455667777777777777666766666664
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=59.76 E-value=28 Score=24.55 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
..+..|+.....|..++..|..++..|++++
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777788888888888888888887765
No 62
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=59.51 E-value=28 Score=25.26 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.|+.|...|..|..+..+|..++..|+..+..-|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777776665544
No 63
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.35 E-value=23 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 195 LENRVAILENQNKALIDELK 214 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~ 214 (226)
|.-+++.|..+|..|.+++.
T Consensus 23 LqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 64
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=59.09 E-value=50 Score=29.96 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 185 RRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 185 R~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
|.|=|.+..+||.++..+..++..|+.|++.|+.-...|.
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667899999999999999999999999998876664
No 65
>smart00340 HALZ homeobox associated leucin zipper.
Probab=58.34 E-value=23 Score=24.60 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 197 NRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 197 ~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
.=.+.|..+|..|..|++.|+.+
T Consensus 12 rcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 12 RCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33577889999999999988865
No 66
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.77 E-value=39 Score=24.39 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
-+..++.+.+.+......|.+.++.|-.+|..
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888887776643
No 67
>KOG2483|consensus
Probab=56.24 E-value=30 Score=31.36 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+|.++||..|+.+..........|..+...|+..+.+|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999998876666666666666666666655543
No 68
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.88 E-value=69 Score=27.10 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
.++.++.|+.+++..+.+...|++|.+.|..+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555444
No 69
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=55.63 E-value=37 Score=27.98 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
..|.+-+++|+.+.+.|+.+.++|..+-..|++.+..|+.
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777788887777887777777777776653
No 70
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=54.88 E-value=5.6 Score=30.25 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=12.4
Q ss_pred ccCc-hHHHHhhhccccc
Q psy1987 62 TRRP-SYRKILNDLRGAE 78 (226)
Q Consensus 62 sRRP-SYRKIlnelss~~ 78 (226)
|.|+ .|||||.|-+--.
T Consensus 3 s~RlsCyrk~L~D~nCH~ 20 (78)
T PF15224_consen 3 SNRLSCYRKILKDHNCHN 20 (78)
T ss_pred ccchhHHHHHhccCCcCc
Confidence 5566 4999999876443
No 71
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.78 E-value=1.1e+02 Score=26.76 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDEL 213 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el 213 (226)
.|..+++.+..++..+++++
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.18 E-value=90 Score=28.86 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=5.3
Q ss_pred hHHHHhhhcc
Q psy1987 66 SYRKILNDLR 75 (226)
Q Consensus 66 SYRKIlnels 75 (226)
|-..+||+.+
T Consensus 15 sL~~FL~~~~ 24 (325)
T PF08317_consen 15 SLQDFLNMTG 24 (325)
T ss_pred CHHHHHHHhC
Confidence 3355666653
No 73
>KOG4797|consensus
Probab=53.97 E-value=19 Score=29.73 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+|.++-|..++..|++.|..|.+|+..||...
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35567777777888888888888888887654
No 74
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.24 E-value=26 Score=36.16 Aligned_cols=34 Identities=41% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+..++..++.|+.+|..|..++..|+.++..|+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666655554
No 75
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=52.23 E-value=1.5e+02 Score=25.43 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+...+..+++++.|-.|+..-++|-.-...|..++...+....+|...+..|-..+..
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788899999999999999888888888888888888888887777766554
No 76
>KOG0709|consensus
Probab=52.19 E-value=15 Score=36.46 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
-++|..+|..||.+|..|.++|+.|+.++.+
T Consensus 288 NqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 288 NQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred cHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 3556666777777777777777777666654
No 77
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=52.05 E-value=92 Score=27.24 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
++|++++..-+.+.+.++.+..+|..++...+.
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456688888888778888887788877776654
No 78
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.05 E-value=1.4e+02 Score=26.10 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 170 REMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 170 rerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
..++.++|-..-..+=..-|..+..++.++..|+-++..|.+.+..|..+...|
T Consensus 73 eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 73 ELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555666666777777777766666666666655544
No 79
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.90 E-value=1.3e+02 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 184 CRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 184 cR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
-++.-...+..|+.+++.|+..|..|...+..+++++..|+
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666555555555555443
No 80
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.64 E-value=26 Score=34.90 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 201 ILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 201 ~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.|..+..+|..+...|+.++.+|
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566665665555554
No 81
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=51.57 E-value=84 Score=27.97 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNK---ALIDELKSLKELY 220 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~---~L~~el~~Lk~~~ 220 (226)
++..+.|+.+++.|+.++. .|++|+..|++++
T Consensus 75 ~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 75 REENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555544444 3455555555544
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=50.81 E-value=1.3e+02 Score=25.30 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=35.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 173 RLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 173 Rl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
....|+..+-.--.-+|..+.+|+.++..+..+.+.|..+|..|+.+-..|
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777766777778888888888777776666666666666554433
No 83
>KOG4571|consensus
Probab=50.81 E-value=99 Score=29.22 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=38.4
Q ss_pred cHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 165 DQSRKREMRLL---KNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 165 e~e~KrerRl~---KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
...+||+.++. |=|.--+.-+.-=-..++.||.+...|..+-..|..|+..||+++.-
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544 33322222233334566788889999999999999999999988753
No 84
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.62 E-value=60 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKA 208 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~ 208 (226)
+++..||.+++.++.-..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~ 22 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEE 22 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777776654443333
No 85
>PRK11239 hypothetical protein; Provisional
Probab=50.19 E-value=28 Score=31.46 Aligned_cols=31 Identities=29% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.+..||.+|..|+.+..+|+.++..|.+++.
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~~ 214 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHLG 214 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466999999999999999999998887653
No 86
>PLN02320 seryl-tRNA synthetase
Probab=49.60 E-value=66 Score=32.26 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 172 MRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 172 rRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.|.+||.+|.+-..+++++-.+.|-.++..|..+...|.+++..+.+++..
T Consensus 112 lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 112 LRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788877665544444455666666777777777777776666665543
No 87
>KOG4196|consensus
Probab=48.43 E-value=26 Score=29.54 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 200 AILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
..||.+|..|..++..|++++..+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998887653
No 88
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.41 E-value=61 Score=24.91 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.-+..|-.++...+.+|..|..+++.|+.-+..|
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888889999999999888877665
No 89
>PRK04325 hypothetical protein; Provisional
Probab=48.14 E-value=62 Score=24.11 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKA 208 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~ 208 (226)
+++.+||.+++.++.-..+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~ 27 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDG 27 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578888887655443333
No 90
>PRK00295 hypothetical protein; Provisional
Probab=48.05 E-value=64 Score=23.64 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQN 206 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN 206 (226)
+++.+||.+++.++.-.
T Consensus 5 ~Ri~~LE~kla~qE~ti 21 (68)
T PRK00295 5 ERVTELESRQAFQDDTI 21 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34778888876555433
No 91
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=47.83 E-value=54 Score=26.59 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
...|++||+-|+-+++.|-+++...
T Consensus 81 ~~~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999988887653
No 92
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=47.69 E-value=33 Score=32.42 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
-.++.|..++..|+.+|..|+.+...|+.....+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 4467788888888888888888888887655443
No 93
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.64 E-value=68 Score=23.30 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+..+..++..++.+...|..+...|+.+...|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 446667777777777777777777777776654
No 94
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=47.44 E-value=37 Score=25.62 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 196 ENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 196 E~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
...|+.|..++.+|..+++.+++++..++
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k 30 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLK 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666655555555443
No 95
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=47.44 E-value=79 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy1987 168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL---ENQNKAL 209 (226)
Q Consensus 168 ~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~L---e~eN~~L 209 (226)
.+.++...++|+ ++|++|+++|..+...| -..|+.+
T Consensus 6 Le~ek~~~~~rI------~~K~~~LqEL~~Q~va~knLv~RN~~~ 44 (142)
T PF08781_consen 6 LEEEKQRRRERI------KKKKEQLQELILQQVAFKNLVQRNRQL 44 (142)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555 67899999999886554 3444444
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=47.06 E-value=1.1e+02 Score=31.29 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 176 KNREAAKECRRKKKEYIKCLENRVAIL------------------------ENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 176 KNR~AA~kcR~RKKeyi~~LE~~v~~L------------------------e~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+|...-...-..+++++.+||.++..+ -++|.+|+++|..|++-|..+.+
T Consensus 108 ~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 108 ENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444456778888888776432 35788899999999988877654
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=46.97 E-value=79 Score=30.30 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+..|+.+...|+.++..++.++..|++++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778888888888888888888888877765
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.78 E-value=96 Score=32.28 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDEL 213 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el 213 (226)
+||.++..|+.+.+...+++
T Consensus 549 ~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333
No 99
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.43 E-value=1.4e+02 Score=23.21 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
++.-..+.+-+..+..-+..|...+..|..+...|...+..+
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555555555555555444
No 100
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.13 E-value=70 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILEN 204 (226)
Q Consensus 190 eyi~~LE~~v~~Le~ 204 (226)
+++..||.+++..+.
T Consensus 8 ~Ri~~LE~~lafQe~ 22 (72)
T PRK02793 8 ARLAELESRLAFQEI 22 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777765443
No 101
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.81 E-value=47 Score=28.78 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 199 VAILENQNKALIDELKSLKE 218 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~ 218 (226)
+..|..+|..|..++..|..
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333
No 102
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=45.70 E-value=38 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+..|+.+...|..++..|+..+..|+.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666666666666666653
No 103
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=44.98 E-value=50 Score=29.40 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~ 214 (226)
..|..+.+.|++||..|+.++.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 104
>PRK04406 hypothetical protein; Provisional
Probab=44.82 E-value=74 Score=23.87 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILEN 204 (226)
Q Consensus 190 eyi~~LE~~v~~Le~ 204 (226)
+++..||.+++.++.
T Consensus 11 ~Ri~~LE~~lAfQE~ 25 (75)
T PRK04406 11 ERINDLECQLAFQEQ 25 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777765443
No 105
>PRK00736 hypothetical protein; Provisional
Probab=44.54 E-value=78 Score=23.19 Aligned_cols=16 Identities=44% Similarity=0.358 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQ 205 (226)
Q Consensus 190 eyi~~LE~~v~~Le~e 205 (226)
+++..||.+++.++.-
T Consensus 5 ~Ri~~LE~klafqe~t 20 (68)
T PRK00736 5 ERLTELEIRVAEQEKT 20 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577888887655443
No 106
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.44 E-value=82 Score=30.36 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 172 MRLLKNREAAKECRR-KKKEY-IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 172 rRl~KNR~AA~kcR~-RKKey-i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.|.+||.+|..--.. ++++. .+.|-.++..|.++.+.|.+++..+.+.+..
T Consensus 49 l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 49 LQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788877654332 22233 4566666677777777777777666665543
No 107
>PRK02119 hypothetical protein; Provisional
Probab=44.42 E-value=77 Score=23.58 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILEN 204 (226)
Q Consensus 190 eyi~~LE~~v~~Le~ 204 (226)
+++..||.+++..+.
T Consensus 9 ~Ri~~LE~rla~QE~ 23 (73)
T PRK02119 9 NRIAELEMKIAFQEN 23 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777765443
No 108
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.41 E-value=77 Score=30.62 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 173 RLLKNREAAKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 173 Rl~KNR~AA~kcR-~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
|.+||.+|.+-.. .++++-.+.|-.++..|.++.+.|.+++..+.+.+..
T Consensus 48 r~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 48 QAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667766654433 2222244556666666666666676666666665543
No 109
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.17 E-value=1.1e+02 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+++..+.++.+++.|+.+......++..|+.+..++..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666778888888888888888888888888877654
No 110
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.08 E-value=90 Score=23.19 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.++.++..|+.+...|..++..++..+.
T Consensus 72 ~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 72 EKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666655555443
No 111
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=44.01 E-value=1.5e+02 Score=28.44 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLEN-------------------------RVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~-------------------------~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
....+++++++++||+..+.=+||...++-=+. +|--|..++.+|.++|..+..+
T Consensus 118 ~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~e 197 (323)
T PF08537_consen 118 RKSGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKE 197 (323)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778999999999888887543321111 1335677777777777777766
Q ss_pred HHhh
Q psy1987 220 YCQQ 223 (226)
Q Consensus 220 ~~ql 223 (226)
+..+
T Consensus 198 L~~~ 201 (323)
T PF08537_consen 198 LEIT 201 (323)
T ss_pred HHHH
Confidence 6543
No 112
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.76 E-value=60 Score=26.96 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
+|...+..|+.++..|...|..|+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555543
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.04 E-value=1.5e+02 Score=25.29 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALI 210 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~ 210 (226)
+..+.+|+..+..+..-|..|.
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333
No 114
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=42.72 E-value=55 Score=26.05 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..-|-.++..|+.+|+.|..||..++..+.
T Consensus 17 a~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 17 AELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455577888999999999988887664
No 115
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=42.33 E-value=69 Score=26.19 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKAL 209 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L 209 (226)
+.++.|+.++..|+.+.+.+
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555555444
No 116
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.09 E-value=81 Score=24.61 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.++.+++.|+.+-..|..++..++..+..+
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666666666666666666665543
No 117
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=41.80 E-value=85 Score=24.62 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
=...+..|+.++..|..+|..|+.++..-+++-..|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999888777665443
No 118
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=41.52 E-value=24 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALI 210 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~ 210 (226)
+-++.+||.+|..|.+-|+.|-
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHH
Confidence 3456677777777777776664
No 119
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=41.49 E-value=45 Score=30.87 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
-+..|+.++..|..+|.+|+.+++.|+.++...
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~ 65 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAA 65 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777788888888888887777776543
No 120
>KOG1029|consensus
Probab=41.22 E-value=1e+02 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy1987 202 LENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 202 Le~eN~~L~~el~~Lk~~~~ql 223 (226)
|...+++|..+++.|+..+.+|
T Consensus 435 ~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665554
No 121
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=41.15 E-value=69 Score=23.18 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 194 CLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+|.|++.||.+.+...++++..+......|
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677777777777777777776666665554
No 122
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=41.00 E-value=35 Score=23.34 Aligned_cols=41 Identities=34% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 172 MRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDEL 213 (226)
Q Consensus 172 rRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el 213 (226)
++...|+.=|+.. .--...+..||.++..|..+|..|++++
T Consensus 4 k~~~qn~~laK~N-s~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRN-SALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh-HHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444555444321 1123456677777777777777777655
No 123
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.75 E-value=66 Score=25.71 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
.+..|..+-..|.-||..|++.+..+
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 124
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.27 E-value=1.2e+02 Score=29.48 Aligned_cols=52 Identities=29% Similarity=0.312 Sum_probs=38.5
Q ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 173 RLLKNREA-AKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 173 Rl~KNR~A-A~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+++|-+- ++.-=.|-|...+.||.-+..++++|..|.-+|+.|..++..+.
T Consensus 109 qkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 109 QKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 34555543 33344677888899999999999999999999988888775443
No 125
>PLN02678 seryl-tRNA synthetase
Probab=40.06 E-value=1e+02 Score=30.33 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 172 MRLLKNREAAKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 172 rRl~KNR~AA~kcR-~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.|.+||.+|.+--. ++.++-.+.|-.++..|..+...|..++..+++.+..
T Consensus 52 lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 52 LRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777755432 3344445556666666666666666666666655543
No 126
>KOG4343|consensus
Probab=39.48 E-value=35 Score=34.93 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
=+.+++.|+.+.+.|..||.+|+.+|..|-.+-..+|
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3456777888888888888888888888776655443
No 127
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.46 E-value=2e+02 Score=26.56 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILE----NQNKALIDELKSLKELYC 221 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le----~eN~~L~~el~~Lk~~~~ 221 (226)
+....|.-.+.+---+.++...+.+..++.||++++... ..+..|..++..|+....
T Consensus 46 ~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 46 SVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhc
Confidence 333334444444445678888888899999999999888 666777777888876543
No 128
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=39.43 E-value=98 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
++.++.+...|+.+|..|+-|...|.+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 667777777777777777777766654
No 129
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=39.13 E-value=1.4e+02 Score=24.34 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~ 214 (226)
|+.+.+.+.|.+|||++-.+ |...+-.+...-.-|..+|.-+..|-+
T Consensus 50 EER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqq 96 (121)
T PF10669_consen 50 EERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQ 96 (121)
T ss_pred HHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHH
Confidence 55666677788899887542 222333333333446666666555543
No 130
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=38.76 E-value=70 Score=22.45 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 201 ILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 201 ~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.|..+...|..+++.|+.-+.+.|
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665544
No 131
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.63 E-value=1e+02 Score=23.77 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.|+.+++.|+.+-..|..++..|+..+.
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 132
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.40 E-value=1.3e+02 Score=24.66 Aligned_cols=52 Identities=29% Similarity=0.266 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIK-CLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~-~LE~~v~~Le~eN~~L~~el~~L 216 (226)
...+.-+|--|+.|||--+--+|..+++. +|-.+++.||..+++.+..+..|
T Consensus 20 R~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 20 RNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456677788999998877766666654 78888999998887777766544
No 133
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.23 E-value=98 Score=24.86 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 196 ENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 196 E~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.+++.|+.+-..|.+++..++..+.
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555444
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.05 E-value=69 Score=26.57 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..+|..+..|...|..|..++..+...+.
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 135
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.98 E-value=1.5e+02 Score=26.19 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=36.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 172 MRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 172 rRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.+.++.|+=+--.+.++.+-+-.+|.++...+.+...|..++..|.+.+.
T Consensus 144 l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 144 LEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555554456667788888899998888888888888888887664
No 136
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.94 E-value=79 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.022 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
..++.++..|+.++.+|..|+..|+...
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666665543
No 137
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.84 E-value=2.7e+02 Score=24.04 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy1987 190 EYIKCLENRVA 200 (226)
Q Consensus 190 eyi~~LE~~v~ 200 (226)
++++..+..+.
T Consensus 99 ~~L~~~e~~l~ 109 (201)
T PF12072_consen 99 EQLEKREEELE 109 (201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 138
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.51 E-value=1.1e+02 Score=23.66 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.|+.+++.|+++-..+..++..|+..+.++
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777777777777666554
No 139
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.29 E-value=2.2e+02 Score=26.49 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=5.7
Q ss_pred ecCCCccccc
Q psy1987 112 VIPAGHIHLS 121 (226)
Q Consensus 112 i~p~g~~ql~ 121 (226)
|+|.-.+.|+
T Consensus 42 IiPTT~~eIA 51 (290)
T COG4026 42 IIPTTNVEIA 51 (290)
T ss_pred eccCchHHHH
Confidence 5665555554
No 140
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=37.16 E-value=2.6e+02 Score=24.30 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=25.1
Q ss_pred HhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 176 KNRE---AAKECRRKKKEYIKCLENRVAILENQNKALIDELKS 215 (226)
Q Consensus 176 KNR~---AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~ 215 (226)
=||. +.+-|++|.|+|-+.||. +.....+...|...|-.
T Consensus 96 vNreLkpl~~~cqKKEkEykealea-~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALEA-FNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4555 577899999999999986 44444444444444433
No 141
>KOG1853|consensus
Probab=37.14 E-value=2.2e+02 Score=26.98 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 173 RLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 173 Rl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+-+--|.--.++..--.++-.+||.++..|+..|+.|...++.|+-++..+|
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666677788888888888777777777777766666555444
No 142
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=37.11 E-value=11 Score=34.33 Aligned_cols=32 Identities=31% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
|.+|..-|..|..+|+.|+++++.|+++...|
T Consensus 131 I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667778888888888888888777666
No 143
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=36.67 E-value=1.1e+02 Score=23.06 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
...+..++..++.++..|..+...|+-+...++
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667788888888888888888888877765
No 144
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=36.46 E-value=1e+02 Score=24.00 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 201 ILENQNKALIDELKSLKELY 220 (226)
Q Consensus 201 ~Le~eN~~L~~el~~Lk~~~ 220 (226)
.+..+|..|.+|++.|++.+
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv 40 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV 40 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444
No 145
>PRK14127 cell division protein GpsB; Provisional
Probab=36.13 E-value=92 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.|..+...|+.+|..|+.++..++..+.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444455555555555555444443
No 146
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.46 E-value=91 Score=25.23 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
|..+..|..+...|+-||..|++.+..+
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556666666666666666554
No 147
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=35.45 E-value=98 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q psy1987 191 YIKCLENRVAILENQNKA----LIDELKSLKELYCQQE 224 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~----L~~el~~Lk~~~~qlk 224 (226)
++..+|..+..|..+... |..|+..|+..+..|.
T Consensus 4 qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456677777777766544 6777777777766554
No 148
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=35.39 E-value=1.2e+02 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+...++.+..+|..|..+...|+.++..|+
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455556666666666666666555554
No 149
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=35.32 E-value=1.1e+02 Score=21.77 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.++|+.+++.|..+ +..|+..|+..+.++.
T Consensus 10 ~~eL~~rl~~LD~~---ME~Eieelr~RY~~KR 39 (49)
T PF11629_consen 10 YEELQQRLASLDPE---MEQEIEELRQRYQAKR 39 (49)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHH---HHHHHHHHHHHHHHhh
Confidence 56788888777765 7778888888777654
No 150
>KOG1656|consensus
Probab=35.32 E-value=1.4e+02 Score=27.15 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1987 170 REMRLLKNREAAKECRRKKKEYIKCLEN 197 (226)
Q Consensus 170 rerRl~KNR~AA~kcR~RKKeyi~~LE~ 197 (226)
.++..-||+-+|-.|=+|||.|-+.|..
T Consensus 52 A~k~~tkNKR~AlqaLkrKK~~E~qL~q 79 (221)
T KOG1656|consen 52 ARKYGTKNKRMALQALKRKKRYEKQLAQ 79 (221)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445668999999999999998776654
No 151
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.30 E-value=1.5e+02 Score=26.71 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 173 RLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 173 Rl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
-++.=|++|++-.+|+++.+..|.+-+..--.|-.+.+++++.|.
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999888888888888888776
No 152
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=35.21 E-value=1.3e+02 Score=21.58 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
|.+-|..+. .|..++..|.+++..|+.++.|
T Consensus 28 Y~~vL~~R~-~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 28 YNKVLLDRA-ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 444454443 3444556677777777666654
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.19 E-value=2.8e+02 Score=24.42 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDE 212 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~e 212 (226)
.+.|+..++.++.+...|.++
T Consensus 72 ~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 154
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=35.17 E-value=57 Score=29.12 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.|...+..+..++..|++++..|+++..+
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~elae~ 157 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKELAEH 157 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554443
No 155
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=35.14 E-value=2.1e+02 Score=22.02 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 167 SRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
..++..+.+.+=+++-.-|--+..-...++.++..|......|-++|.........|
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 345555555555555555544444456677777666666666666666555554443
No 156
>PRK00846 hypothetical protein; Provisional
Probab=34.85 E-value=1.3e+02 Score=22.96 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAI 201 (226)
Q Consensus 190 eyi~~LE~~v~~ 201 (226)
+++..||.+++.
T Consensus 13 ~Ri~~LE~rlAf 24 (77)
T PRK00846 13 ARLVELETRLSF 24 (77)
T ss_pred HHHHHHHHHHHH
Confidence 456666666653
No 157
>PRK11637 AmiB activator; Provisional
Probab=34.42 E-value=2.5e+02 Score=26.75 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy1987 192 IKCLENRV 199 (226)
Q Consensus 192 i~~LE~~v 199 (226)
+..|+.++
T Consensus 77 l~~l~~qi 84 (428)
T PRK11637 77 LKKQEEAI 84 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 158
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.90 E-value=3e+02 Score=23.46 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy1987 200 AILENQNKALI 210 (226)
Q Consensus 200 ~~Le~eN~~L~ 210 (226)
+.|+.+|+.|.
T Consensus 99 ~~Le~e~r~L~ 109 (158)
T PF09744_consen 99 EQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 159
>KOG3156|consensus
Probab=33.50 E-value=1.1e+02 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
|++-..-.+.+...|.++|..|+.++..+|..+.+
T Consensus 107 Rsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 107 RSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566888999999999999999888765
No 160
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=33.38 E-value=3e+02 Score=23.76 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
..|+.++..|+.++..|..++..|+..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 161
>PHA02109 hypothetical protein
Probab=33.18 E-value=1.1e+02 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
-|.+.+..|+.+++.|..|..+|+..+..|++.+..
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~ 225 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAEVKR 225 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999988888887764
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.06 E-value=3.1e+02 Score=23.36 Aligned_cols=9 Identities=11% Similarity=0.523 Sum_probs=0.0
Q ss_pred hHHHHhhhc
Q psy1987 66 SYRKILNDL 74 (226)
Q Consensus 66 SYRKIlnel 74 (226)
.|++.+.-.
T Consensus 25 ay~~L~d~~ 33 (194)
T PF08614_consen 25 AYNRLADRT 33 (194)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344444333
No 163
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=33.02 E-value=86 Score=31.98 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+||+++-..++.|+.+|+.|..++..++.++.+..
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~ 404 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYR 404 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555567788888888888888887776654
No 164
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.99 E-value=1.2e+02 Score=23.53 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy1987 192 IKCLENRVAIL 202 (226)
Q Consensus 192 i~~LE~~v~~L 202 (226)
+++|..+...|
T Consensus 27 ieELKekn~~L 37 (79)
T PRK15422 27 IEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 165
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=32.55 E-value=1.7e+02 Score=25.67 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+|-|.++..-|.|-+.+...||.+=+.|.....--+++|..|.+....
T Consensus 119 ~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e 166 (187)
T PF05300_consen 119 LRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAE 166 (187)
T ss_pred HHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677888888999998888888888888888888776554
No 166
>PRK12704 phosphodiesterase; Provisional
Probab=31.88 E-value=2.8e+02 Score=27.79 Aligned_cols=10 Identities=30% Similarity=0.232 Sum_probs=4.2
Q ss_pred HhHHHHHHHH
Q psy1987 176 KNREAAKECR 185 (226)
Q Consensus 176 KNR~AA~kcR 185 (226)
+|++..++.|
T Consensus 81 e~~L~qrE~r 90 (520)
T PRK12704 81 RNELQKLEKR 90 (520)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 167
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=31.53 E-value=67 Score=30.67 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 200 AILENQNKALIDELKSLKELY 220 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~ 220 (226)
..|.+||++|++|+..|++++
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 60 LVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 168
>KOG1318|consensus
Probab=31.35 E-value=96 Score=30.52 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
++..++..+++.+-+.|+..|+.|..+++.|+.+...
T Consensus 286 qq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 286 QQTLQRARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444456666677778888899999999999887653
No 169
>KOG4005|consensus
Probab=31.25 E-value=1.2e+02 Score=28.26 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNK 207 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~ 207 (226)
|.+|+++...|..+|.
T Consensus 99 i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 99 IKDLTEENEILQNEND 114 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555444443333
No 170
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.99 E-value=2.2e+02 Score=27.41 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
...|+.++..|++.+..+..++..|.+.+
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 34444455555554444444444444333
No 171
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.92 E-value=1.5e+02 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 196 ENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 196 E~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
..+.+.|..+|.+|..|...-..++.+
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333556666666666655555554443
No 172
>KOG0982|consensus
Probab=30.83 E-value=3.1e+02 Score=27.64 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.++.|+-++..|+.+|.+|+..+..|+.+.-.|.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677888888888888888877766554
No 173
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.52 E-value=2.7e+02 Score=21.86 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy1987 187 KKKEYIKCLENRVAI 201 (226)
Q Consensus 187 RKKeyi~~LE~~v~~ 201 (226)
+...++..+|.+++.
T Consensus 46 ~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 46 EHDRRLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334555555555543
No 174
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=30.30 E-value=83 Score=28.92 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~ 214 (226)
..+..+..++..|++||+.|++.+.
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456667778888888888877664
No 175
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=30.01 E-value=1e+02 Score=25.11 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
++++.+.+.|+.+..+|..+++.+++
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777788888888888877776653
No 176
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.84 E-value=1.3e+02 Score=23.86 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
+..+..+.+.|+..++.+.++++.|+++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 89 LQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555544
No 177
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=29.83 E-value=86 Score=25.10 Aligned_cols=75 Identities=25% Similarity=0.434 Sum_probs=38.4
Q ss_pred chHHHHhhhccccccccCccccCCCCCCCC--CCCCccccCCCCc-ceeeecCCCcccccCCCCCCCccceecccCCCCC
Q psy1987 65 PSYRKILNDLRGAEIATGKVESSGSDCDDS--NLDSELSSHSLPT-HYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSA 141 (226)
Q Consensus 65 PSYRKIlnelss~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~p~-~y~~i~p~g~~ql~~~g~g~qgl~~lt~~~~~~~ 141 (226)
++|.-|++-|.....-.--++- +-|.+. +.++.-+.-.+.. .| .|.++|+|-++.. -+|+.+ +
T Consensus 4 ~~~~~i~~AL~~Gk~V~v~iDl--s~Ct~~~~~~~~s~t~Gg~~i~ay-rI~~D~tlaFSd~--------HfTv~~---~ 69 (100)
T PF06903_consen 4 NTYAAILQALDAGKNVTVVIDL--SQCTPEGEGTPPSKTRGGLRIDAY-RITPDGTLAFSDT--------HFTVDN---D 69 (100)
T ss_pred ccHHHHHHHHHcCCeEEEEEEH--HHCccCCCCCCCcccCcccceeeE-EEeCCCeEEEecc--------eEEECC---C
Confidence 6899999999755321111111 122111 1222112222222 23 4899999888643 345544 3
Q ss_pred CCceeeec-----CCCc
Q psy1987 142 GGTIVQYS-----QDGQ 153 (226)
Q Consensus 142 g~tivq~a-----~dgq 153 (226)
|.+|+||- +||.
T Consensus 70 g~Pi~qf~rY~i~~dg~ 86 (100)
T PF06903_consen 70 GKPIQQFIRYQIRPDGS 86 (100)
T ss_pred CCceEeEEEEEEcCCCc
Confidence 77777765 7773
No 178
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.72 E-value=1.7e+02 Score=21.68 Aligned_cols=30 Identities=37% Similarity=0.410 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+..|+.+.+.++.+...|..++..|...+.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 179
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=29.69 E-value=1.4e+02 Score=26.12 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
++++..|+.+.+.|+.+|..|..++...++.+..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888777777666543
No 180
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.67 E-value=1.3e+02 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1987 201 ILENQNKALIDELKSLK 217 (226)
Q Consensus 201 ~Le~eN~~L~~el~~Lk 217 (226)
.|+.+|.+|+++-...+
T Consensus 50 aL~~eneqlk~e~~~WQ 66 (79)
T COG3074 50 ALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 181
>PF14645 Chibby: Chibby family
Probab=29.65 E-value=1.3e+02 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 199 VAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
...|++||.-|+-+++.|-+.+.
T Consensus 80 n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 80 NQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655543
No 182
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.63 E-value=2.5e+02 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=10.7
Q ss_pred ccccccCchHHHHhhhcc
Q psy1987 58 DITLTRRPSYRKILNDLR 75 (226)
Q Consensus 58 ~~iLsRRPSYRKIlnels 75 (226)
+.+|-+.--|+-|.+-|.
T Consensus 41 r~lLqqy~~~~~~i~~le 58 (258)
T PF15397_consen 41 RKLLQQYDIYRTAIDILE 58 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334777666776655554
No 183
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.50 E-value=4e+02 Score=24.92 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+..++.++.+++..+.+.+.++.++...+..+.+++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666654
No 184
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.48 E-value=3e+02 Score=28.16 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy1987 190 EYIKCLEN 197 (226)
Q Consensus 190 eyi~~LE~ 197 (226)
..++.|+.
T Consensus 171 ~~v~~l~~ 178 (546)
T PF07888_consen 171 EEVERLEA 178 (546)
T ss_pred HHHHHHHH
Confidence 33333333
No 185
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.38 E-value=1.9e+02 Score=22.23 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
++.|+.+...++.+-..|+.++..|
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555665555565555554
No 186
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=29.24 E-value=1.7e+02 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKS 215 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~ 215 (226)
++.|+.+...+..+...+..++..
T Consensus 79 l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 79 LEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 187
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.06 E-value=82 Score=28.83 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q psy1987 202 LENQNKALID 211 (226)
Q Consensus 202 Le~eN~~L~~ 211 (226)
|+.||.+|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 188
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.06 E-value=3.4e+02 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 183 ECRRKKKEYIKCLENRVAILENQNKALI 210 (226)
Q Consensus 183 kcR~RKKeyi~~LE~~v~~Le~eN~~L~ 210 (226)
.-++..++.++.++..++.+..+-..|.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 189
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=28.67 E-value=2.3e+02 Score=26.46 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
.+..||.++..+|.+|.....+|..++
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 344444444445555444444444443
No 190
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.63 E-value=4.2e+02 Score=26.58 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 174 LLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 174 l~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
..+|...|+.--.|-.+.-..|..++..|..+...|..+.+.|...-
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666556556666777777766666666666665554443
No 191
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.06 E-value=1.3e+02 Score=27.88 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=6.0
Q ss_pred CCCCceeeecC
Q psy1987 140 SAGGTIVQYSQ 150 (226)
Q Consensus 140 ~~g~tivq~a~ 150 (226)
..|+.+|-.|.
T Consensus 55 aeGADlvlIAT 65 (290)
T COG4026 55 AEGADLVLIAT 65 (290)
T ss_pred hccCCEEEEee
Confidence 34566665553
No 192
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.80 E-value=2.6e+02 Score=25.80 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
-+.+|+.++..+......+..+...|+.+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333333333333
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.29 E-value=1.8e+02 Score=21.19 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
..+++-|.+...|+.+...|++++..|+.
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677788888888888888888888764
No 194
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.26 E-value=1.9e+02 Score=22.64 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.|+..++.|+.....|..++..+...+.++
T Consensus 97 ~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 97 EELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777777777766665543
No 195
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.16 E-value=1.2e+02 Score=22.01 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKS 215 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~ 215 (226)
+.+|+.+++.|+.|...++.++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766666666655543
No 196
>KOG0977|consensus
Probab=26.97 E-value=1.4e+02 Score=30.41 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy1987 182 KECRRKKKEYIKCLENR-------VAILENQNKALIDELKSLKE 218 (226)
Q Consensus 182 ~kcR~RKKeyi~~LE~~-------v~~Le~eN~~L~~el~~Lk~ 218 (226)
+.+|.|=|+.|..|=.+ |..||.||..|..++..|+.
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 197
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.89 E-value=2.9e+02 Score=21.03 Aligned_cols=45 Identities=31% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHhHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 169 KREMRLLKNRE-AAKECRRKKK----EYIKCLENRVAILENQNKALIDEL 213 (226)
Q Consensus 169 KrerRl~KNR~-AA~kcR~RKK----eyi~~LE~~v~~Le~eN~~L~~el 213 (226)
+....++++=. |-.+-|.||. +.+..|..++..|..+|..|..++
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455433 3344444443 345666666677777777776665
No 198
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.86 E-value=1.3e+02 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~ 214 (226)
|.-|.-+++.|..+|..|..+.+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHH
Confidence 34444455555555555544444
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.70 E-value=1.2e+02 Score=27.33 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
-+|..+++.|+.+...|+-+++.+..++.+++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666666666666666666666666655544
No 200
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.55 E-value=1.8e+02 Score=27.57 Aligned_cols=39 Identities=31% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 185 RRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 185 R~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
|++..+..++|+.+.+.|..+|+..+..|..|...+..+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455556667777777777777777777777666665544
No 201
>KOG1962|consensus
Probab=26.48 E-value=1.1e+02 Score=27.68 Aligned_cols=7 Identities=43% Similarity=0.491 Sum_probs=3.7
Q ss_pred HHhhhcc
Q psy1987 69 KILNDLR 75 (226)
Q Consensus 69 KIlnels 75 (226)
+|+++.+
T Consensus 30 ~~~~~~~ 36 (216)
T KOG1962|consen 30 KIFKDRL 36 (216)
T ss_pred HHHHHHH
Confidence 5555554
No 202
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.44 E-value=1.9e+02 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+++.||.+...|..+..+|.+-...-+.++.+
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666655555555543
No 203
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.34 E-value=1.1e+02 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~ 214 (226)
+..|+.++..|+.||.-|++-+.
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666553
No 204
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.29 E-value=2.8e+02 Score=24.74 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 176 KNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 176 KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.||--...||.=.++ ...|..++..|..+|..|..+...|+....+|
T Consensus 82 ~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 82 ENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 333333445544443 46777788888888888777777666665554
No 205
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.08 E-value=3.4e+02 Score=21.63 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy1987 209 LIDELKSLKEL 219 (226)
Q Consensus 209 L~~el~~Lk~~ 219 (226)
-+++|+.|.+.
T Consensus 88 ~~k~i~~le~~ 98 (100)
T PF04568_consen 88 HRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 206
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.89 E-value=2.1e+02 Score=22.79 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
.+++..|.+.+.|.....+|..+++.|..++..+|.
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888887764
No 207
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=25.80 E-value=5.4e+02 Score=23.94 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
++-.|+.+++++-..+++.-..+-...+-.+-.+...+..+...+..++..|..++..|..
T Consensus 247 ekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 247 EKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445777888888888877777777777777777778888888899999999998887754
No 208
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=25.58 E-value=1.3e+02 Score=24.81 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+..|-..+..|-.+|..|+-|+..|++.+..
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3344444566777777888888888776654
No 209
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.44 E-value=1.1e+02 Score=30.67 Aligned_cols=38 Identities=3% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 226 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~~ 226 (226)
+...++||.+++.|+.+.+.|..+++.+++.+..|..|
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
No 210
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.23 E-value=20 Score=30.97 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.7
Q ss_pred hHHHHhhhccccccccCcccc
Q psy1987 66 SYRKILNDLRGAEIATGKVES 86 (226)
Q Consensus 66 SYRKIlnelss~~~~~~~~~e 86 (226)
.|||||++||+.=+.-+.+||
T Consensus 25 t~rKl~~aLstgW~T~~eiee 45 (170)
T COG4860 25 TKRKLLLALSTGWITLPEIEE 45 (170)
T ss_pred HHHHHHHHHhhcceeHHHHHH
Confidence 689999999999877777764
No 211
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.23 E-value=1.6e+02 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
++.-+.+.+.|++++...++.+..++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554444443
No 212
>PF14645 Chibby: Chibby family
Probab=25.11 E-value=1.3e+02 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
+.|+++...|.-++.-|..-+..-.
T Consensus 81 ~~L~EENN~Lklk~elLlDMLtett 105 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLTETT 105 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655554333
No 213
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.10 E-value=4e+02 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhh
Q psy1987 211 DELKSLKELYCQQ 223 (226)
Q Consensus 211 ~el~~Lk~~~~ql 223 (226)
.++..|+....+|
T Consensus 170 ~ei~~lk~~~~ql 182 (189)
T PF10211_consen 170 EEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344333333
No 214
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.05 E-value=2.6e+02 Score=20.28 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
+++..||...+.++.+-..+..++..+.
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 215
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=24.69 E-value=2.5e+02 Score=19.67 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 181 AKECRRKKKEYIKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 181 A~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~ 214 (226)
......+++++.+.++.....--..-..|.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~ 44 (77)
T PF03993_consen 11 CDAFFDRRKEFFEEQDAEREENLEKKEALIEEAE 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333444333
No 216
>PRK09039 hypothetical protein; Validated
Probab=24.65 E-value=4e+02 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 170 REMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 170 rerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+...+++..++|-+.. +..|+..++.++.+......++..|+..+
T Consensus 137 ~~V~~L~~qI~aLr~Q------la~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 137 AQVELLNQQIAALRRQ------LAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554433 44444444444444444444444444433
No 217
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.64 E-value=2.4e+02 Score=21.91 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKS 215 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~ 215 (226)
..++.|+.+...|+.+-..+..++..
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555555544
No 218
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.29 E-value=1.9e+02 Score=22.14 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.|+.....|+.+...+..++..+...+.++
T Consensus 87 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 87 KELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554443
No 219
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.21 E-value=2.7e+02 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
..|+.++.++..|..+|..|++-...++.
T Consensus 132 ~~ie~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 132 KEIEQKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999988877655544443
No 220
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=23.93 E-value=1.6e+02 Score=31.27 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 179 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 179 ~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.-|+-+...||.|+++|.=++.-|.+. ++++|++.+|+.-.
T Consensus 420 q~~kl~k~q~k~y~de~dyr~kl~~kk--q~ke~~~r~k~~k~ 460 (763)
T TIGR00993 420 QMAKLSKEQRKAYLEEYDYRVKLLQKK--QWREELKRMKMMKK 460 (763)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 346678889999999999999988764 68999998888743
No 221
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.79 E-value=5e+02 Score=24.35 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy1987 192 IKCLENRVAIL 202 (226)
Q Consensus 192 i~~LE~~v~~L 202 (226)
+.+++.++..+
T Consensus 227 l~e~~~~l~~l 237 (312)
T smart00787 227 LEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 222
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.76 E-value=3.5e+02 Score=28.23 Aligned_cols=28 Identities=32% Similarity=0.264 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 195 LENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+..+...||.|.+.|+.+++...+.+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~ 570 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 223
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=23.67 E-value=2.4e+02 Score=21.37 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+..|.++-..+.-|+=+|++++...+.++++
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777664
No 224
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=23.52 E-value=2e+02 Score=25.74 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
++++.+...+..+-.+|..|++++..|++.+.+.
T Consensus 30 eFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 30 EFLDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666677777777777777766554
No 225
>KOG1318|consensus
Probab=23.49 E-value=5.3e+02 Score=25.52 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q psy1987 207 KALIDELKSLKELYCQQEM 225 (226)
Q Consensus 207 ~~L~~el~~Lk~~~~qlk~ 225 (226)
+.|...++.|...+..||.
T Consensus 300 k~le~~n~~L~~rieeLk~ 318 (411)
T KOG1318|consen 300 KKLESTNQELALRIEELKS 318 (411)
T ss_pred hHHHhHHHHHHHHHHHHHH
Confidence 3345555555555555543
No 226
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=23.48 E-value=46 Score=20.44 Aligned_cols=10 Identities=60% Similarity=0.969 Sum_probs=8.9
Q ss_pred Cceeeeecce
Q psy1987 5 RPLLVYPFDA 14 (226)
Q Consensus 5 ~~~~~~p~~~ 14 (226)
|-||.||.|+
T Consensus 5 r~~L~yp~GA 14 (25)
T PF06943_consen 5 RTLLMYPRGA 14 (25)
T ss_pred CceEEcCCCC
Confidence 6789999998
No 227
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.13 E-value=2.6e+02 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.|+..+..|+.....|.+++..+...+.
T Consensus 96 ~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 96 EELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555554443
No 228
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.85 E-value=2.1e+02 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+|..+-..|+.+.+.|..+|+.++..+.-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556667777888888888888777776543
No 229
>KOG0250|consensus
Probab=22.85 E-value=3.9e+02 Score=29.60 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987 166 QSRKREMRLLKNREA-AKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 226 (226)
Q Consensus 166 ~e~KrerRl~KNR~A-A~kcR-~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~~ 226 (226)
...|+..+.++-.++ +.+.= +.=.....++|++.+.|+.++..|..++..|+++...++++
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 230
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.83 E-value=1.4e+02 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.|.....+|..++..|.+.+..|+
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777776654
No 231
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.78 E-value=2.3e+02 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 196 ENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 196 E~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
|...+.|..=-..|.+++..|+.++..|+
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777888888888888887765
No 232
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.78 E-value=1.6e+02 Score=21.96 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~ 214 (226)
+.+|+.++..|..+...|+.|+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665553
No 233
>KOG1398|consensus
Probab=22.49 E-value=43 Score=33.12 Aligned_cols=21 Identities=52% Similarity=0.787 Sum_probs=17.9
Q ss_pred ccCchHHHHhhhccccccccC
Q psy1987 62 TRRPSYRKILNDLRGAEIATG 82 (226)
Q Consensus 62 sRRPSYRKIlnelss~~~~~~ 82 (226)
+=||||||.|--|+++.++..
T Consensus 401 tlrpsy~kfL~rl~ggkiS~~ 421 (460)
T KOG1398|consen 401 TLRPSYRKFLRRLLGGKISNP 421 (460)
T ss_pred hcCHHHHHHHHHHhcCccccc
Confidence 459999999999999987655
No 234
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.36 E-value=3.1e+02 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 194 CLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.|......-..+|..|.+++..|-..+..
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444454444444444443
No 235
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=22.35 E-value=5.3e+02 Score=22.90 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENR 198 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~ 198 (226)
|+--+++.+-++|.+.|-|+- +.+||.+
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~E 121 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEE 121 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 455567777788778777665 5566654
No 236
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.01 E-value=1.4e+02 Score=23.39 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 200 AILENQNKALIDELKSLKEL 219 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~ 219 (226)
..+..+|..|.+|++.|+.+
T Consensus 26 ~ka~~~~~kL~~en~qlk~E 45 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 237
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.00 E-value=1.8e+02 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1987 205 QNKALIDELKSLKELYC 221 (226)
Q Consensus 205 eN~~L~~el~~Lk~~~~ 221 (226)
.+.+|++|+..|++++.
T Consensus 92 ~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 92 LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33447777777777664
No 238
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.97 E-value=2.4e+02 Score=25.19 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 174 LLKN-REAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 174 l~KN-R~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
|.|. |.+|..-|+.=- ..+.++..|+..-.+|..++..|++++.-|-
T Consensus 95 WQrFGryta~vmr~eV~----~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 95 WQRFGRYTASVMRQEVA----QYQQKLKELEDKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5554 666666554433 3344455666666666777777776665543
No 239
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.81 E-value=1.5e+02 Score=27.84 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987 195 LENRVAILENQNKALIDELKSLKELYCQQEME 226 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~~ 226 (226)
|..++..|..+++.|..++..|+.++...+..
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 240
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=5.9e+02 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
++.+..|+..+..|+.++..|+.++..++..
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 241
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.54 E-value=4.3e+02 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
+..++.|+.++..++.+...|..++..++..
T Consensus 364 ~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 364 KAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 242
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=21.45 E-value=5.2e+02 Score=22.60 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 202 LENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 202 Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
-.....++..++..|+.++...++
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445566666666666655544
No 243
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=21.44 E-value=3e+02 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.++|++.||.++..|......|..+...|-..+..
T Consensus 29 ~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e 63 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLYKSLERLVKRRQELASALAE 63 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887777777766666555544443
No 244
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.39 E-value=2.6e+02 Score=28.18 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
..++.+++++..|.++..+|.++++.|+++...+
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777666544
No 245
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=21.09 E-value=2.5e+02 Score=18.33 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 195 LENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
|-...+.|......|+..|..|++-
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566666666777777666653
No 246
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.04 E-value=1.4e+02 Score=20.79 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy1987 199 VAILENQ 205 (226)
Q Consensus 199 v~~Le~e 205 (226)
++.++.+
T Consensus 57 l~~le~e 63 (68)
T PF06305_consen 57 LKKLEKE 63 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 247
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.46 E-value=6e+02 Score=24.46 Aligned_cols=36 Identities=39% Similarity=0.425 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+++....|......|..+.++|..++..|++.+...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666667777778888888888888777765
No 248
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=20.44 E-value=1.5e+02 Score=28.27 Aligned_cols=28 Identities=50% Similarity=0.593 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQEME 226 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk~~ 226 (226)
+-.|+..|++|..+...|++.++++..+
T Consensus 273 ~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 273 VLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999999988653
No 249
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=20.39 E-value=1.6e+02 Score=23.49 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
..++.+.+.|..+|..|..+++.|++.
T Consensus 60 ~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 60 AAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367777778888888888888877765
No 250
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.13 E-value=2.9e+02 Score=22.07 Aligned_cols=16 Identities=6% Similarity=-0.068 Sum_probs=8.9
Q ss_pred ccccCchHHHHhhhcc
Q psy1987 60 TLTRRPSYRKILNDLR 75 (226)
Q Consensus 60 iLsRRPSYRKIlnels 75 (226)
+.+..+.|++-++.|.
T Consensus 32 l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 32 LQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556666665554
Done!