Query psy1987
Match_columns 226
No_of_seqs 213 out of 891
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 21:18:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.6 3.5E-15 1.2E-19 105.9 8.1 57 169-225 1-57 (61)
2 2wt7_A Proto-oncogene protein 99.6 8.1E-15 2.8E-19 105.0 8.8 57 169-225 2-58 (63)
3 1jnm_A Proto-oncogene C-JUN; B 99.5 1.5E-14 5.3E-19 103.0 8.0 57 169-225 1-57 (62)
4 1dh3_A Transcription factor CR 99.5 1.1E-14 3.9E-19 102.2 6.0 55 169-223 1-55 (55)
5 1kdx_B CREB; complex (transcri 99.4 1.1E-14 3.9E-19 90.0 -0.7 26 54-79 3-28 (28)
6 2dgc_A Protein (GCN4); basic d 99.4 3E-13 1E-17 97.3 6.6 57 166-222 6-62 (63)
7 1ci6_A Transcription factor AT 99.3 1.7E-12 6E-17 93.1 7.0 57 169-225 2-58 (63)
8 1gu4_A CAAT/enhancer binding p 99.1 5.4E-10 1.9E-14 83.6 8.5 62 164-225 10-71 (78)
9 1hjb_A Ccaat/enhancer binding 99.0 9.3E-10 3.2E-14 83.9 8.5 62 164-225 10-71 (87)
10 1gd2_E Transcription factor PA 98.7 2.9E-08 9.8E-13 73.0 6.9 54 171-224 10-63 (70)
11 3a5t_A Transcription factor MA 98.6 2.6E-09 8.9E-14 84.3 -0.9 62 164-225 32-93 (107)
12 2wt7_B Transcription factor MA 98.5 5.5E-07 1.9E-11 69.1 9.2 59 166-224 24-82 (90)
13 1skn_P DNA-binding domain of S 97.7 1.2E-05 4.3E-10 61.7 2.0 31 167-197 60-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 96.8 0.0062 2.1E-07 43.2 7.6 43 171-213 3-45 (63)
15 2oqq_A Transcription factor HY 96.6 0.0042 1.4E-07 41.5 5.1 36 189-224 2-37 (42)
16 2kz5_A Transcription factor NF 96.4 0.00011 3.8E-09 56.4 -3.5 25 167-191 64-88 (91)
17 2oxj_A Hybrid alpha/beta pepti 96.2 0.0075 2.6E-07 38.6 4.4 32 190-221 1-32 (34)
18 1kd8_B GABH BLL, GCN4 acid bas 95.9 0.014 4.7E-07 37.8 4.7 35 190-224 1-35 (36)
19 3m48_A General control protein 95.9 0.0073 2.5E-07 38.5 3.3 31 191-221 1-31 (33)
20 3c3f_A Alpha/beta peptide with 95.6 0.018 6E-07 36.8 4.4 32 190-221 1-32 (34)
21 1kd8_A GABH AIV, GCN4 acid bas 95.4 0.016 5.5E-07 37.5 3.8 33 190-222 1-33 (36)
22 3c3g_A Alpha/beta peptide with 95.3 0.026 9E-07 35.8 4.4 31 191-221 1-31 (33)
23 2bni_A General control protein 95.0 0.022 7.6E-07 36.4 3.5 32 190-221 1-32 (34)
24 1uo4_A General control protein 94.9 0.026 9E-07 36.1 3.5 31 191-221 2-32 (34)
25 2wq1_A General control protein 94.7 0.05 1.7E-06 34.6 4.4 31 191-221 1-31 (33)
26 2hy6_A General control protein 94.7 0.046 1.6E-06 34.9 4.2 31 191-221 2-32 (34)
27 2r2v_A GCN4 leucine zipper; co 92.7 0.19 6.7E-06 32.1 4.5 31 191-221 2-32 (34)
28 2lz1_A Nuclear factor erythroi 92.0 0.0031 1.1E-07 48.3 -5.3 23 168-190 65-87 (90)
29 1hjb_A Ccaat/enhancer binding 91.4 0.81 2.8E-05 34.5 7.5 50 175-224 28-77 (87)
30 1nlw_A MAD protein, MAX dimeri 91.0 0.52 1.8E-05 34.6 5.9 37 187-223 44-80 (80)
31 3he5_A Synzip1; heterodimeric 90.7 0.41 1.4E-05 32.2 4.6 31 191-221 4-34 (49)
32 1nkp_B MAX protein, MYC proto- 90.3 0.66 2.2E-05 33.6 6.0 38 187-224 44-81 (83)
33 1gu4_A CAAT/enhancer binding p 89.9 0.66 2.2E-05 34.3 5.7 50 175-224 28-77 (78)
34 1nkp_A C-MYC, MYC proto-oncoge 87.5 1.4 4.9E-05 32.6 6.2 39 187-225 49-87 (88)
35 1am9_A Srebp-1A, protein (ster 84.1 1.3 4.4E-05 32.4 4.4 30 188-217 48-77 (82)
36 2oqq_A Transcription factor HY 84.0 2.6 8.8E-05 28.0 5.3 22 192-213 19-40 (42)
37 1fmh_A General control protein 81.4 2.9 9.9E-05 26.0 4.5 29 192-220 3-31 (33)
38 1gd2_E Transcription factor PA 80.6 2.2 7.6E-05 30.8 4.4 35 190-224 36-70 (70)
39 2wuj_A Septum site-determining 79.4 2 6.7E-05 29.6 3.7 30 190-219 27-56 (57)
40 1dip_A Delta-sleep-inducing pe 79.2 2.1 7.1E-05 31.8 3.9 28 192-219 17-44 (78)
41 3ra3_A P1C; coiled coil domain 75.4 3.9 0.00013 24.6 3.6 26 200-225 3-28 (28)
42 2jee_A YIIU; FTSZ, septum, coi 75.1 4.7 0.00016 30.1 4.9 21 195-215 25-45 (81)
43 1deb_A APC protein, adenomatou 75.1 4.6 0.00016 28.0 4.4 32 193-224 6-37 (54)
44 1wt6_A Myotonin-protein kinase 74.5 18 0.00062 27.0 8.0 51 175-225 23-73 (81)
45 1ci6_A Transcription factor AT 73.7 7 0.00024 27.2 5.3 32 190-221 30-61 (63)
46 1uii_A Geminin; human, DNA rep 73.6 7.3 0.00025 29.3 5.6 34 190-223 46-79 (83)
47 1t2k_D Cyclic-AMP-dependent tr 72.9 7.7 0.00026 26.5 5.3 32 190-221 29-60 (61)
48 2yy0_A C-MYC-binding protein; 72.6 7 0.00024 26.7 5.0 26 195-220 24-49 (53)
49 1p9i_A Cortexillin I/GCN4 hybr 72.6 5.5 0.00019 24.4 3.9 28 193-220 2-29 (31)
50 2yy0_A C-MYC-binding protein; 72.5 5.6 0.00019 27.1 4.5 28 197-224 19-46 (53)
51 3nmd_A CGMP dependent protein 72.3 11 0.00039 27.5 6.3 31 188-218 38-68 (72)
52 3m91_A Proteasome-associated A 71.8 7.5 0.00026 26.5 4.9 32 193-224 12-43 (51)
53 1zxa_A CGMP-dependent protein 70.2 6.8 0.00023 28.2 4.6 35 187-221 22-56 (67)
54 3nmd_A CGMP dependent protein 69.6 6.2 0.00021 28.9 4.4 39 186-224 29-67 (72)
55 3s9g_A Protein hexim1; cyclin 69.0 24 0.00081 27.4 7.8 30 189-218 64-93 (104)
56 3m9b_A Proteasome-associated A 69.0 3.4 0.00011 36.7 3.4 33 192-224 63-95 (251)
57 1dip_A Delta-sleep-inducing pe 68.3 4.3 0.00015 30.1 3.3 24 189-212 21-44 (78)
58 3m48_A General control protein 67.4 5.5 0.00019 25.2 3.2 27 199-225 2-28 (33)
59 1kd8_B GABH BLL, GCN4 acid bas 67.3 6 0.00021 25.4 3.4 28 198-225 2-29 (36)
60 1go4_E MAD1 (mitotic arrest de 66.5 12 0.00042 28.8 5.7 33 190-222 12-44 (100)
61 1zme_C Proline utilization tra 66.0 4.9 0.00017 27.1 3.1 25 189-213 43-67 (70)
62 2zxx_A Geminin; coiled-coil, c 65.3 23 0.00078 26.2 6.8 31 190-220 41-71 (79)
63 2oxj_A Hybrid alpha/beta pepti 64.6 7.9 0.00027 24.6 3.5 28 198-225 2-29 (34)
64 3c3f_A Alpha/beta peptide with 63.5 8.5 0.00029 24.4 3.5 28 198-225 2-29 (34)
65 1uo4_A General control protein 61.8 8.2 0.00028 24.5 3.2 28 198-225 2-29 (34)
66 3ra3_B P2F; coiled coil domain 60.7 9 0.00031 23.0 3.1 24 201-224 4-27 (28)
67 3oja_B Anopheles plasmodium-re 60.5 34 0.0012 31.5 8.6 19 205-223 559-577 (597)
68 3oja_B Anopheles plasmodium-re 60.3 40 0.0014 31.1 9.0 37 188-224 535-571 (597)
69 3he4_B Synzip5; heterodimeric 60.3 32 0.0011 22.7 6.0 30 188-217 8-37 (46)
70 3c3g_A Alpha/beta peptide with 60.1 11 0.00037 23.9 3.5 27 199-225 2-28 (33)
71 1hlo_A Protein (transcription 59.6 8.2 0.00028 27.6 3.4 23 189-211 56-78 (80)
72 2oa5_A Hypothetical protein BQ 58.9 5.5 0.00019 31.4 2.5 25 190-214 8-32 (110)
73 3a2a_A Voltage-gated hydrogen 57.6 32 0.0011 24.1 6.0 34 189-222 17-50 (58)
74 4ath_A MITF, microphthalmia-as 57.4 28 0.00095 26.0 6.1 31 190-220 49-79 (83)
75 2wvr_A Geminin; DNA replicatio 57.3 18 0.00061 31.3 5.6 31 193-223 118-148 (209)
76 3he4_A Synzip6; heterodimeric 56.5 23 0.00078 24.2 5.0 45 174-224 7-51 (56)
77 2dfs_A Myosin-5A; myosin-V, in 55.9 39 0.0013 35.0 8.9 31 192-222 1018-1048(1080)
78 1jcd_A Major outer membrane li 55.8 23 0.00078 24.2 4.9 34 191-224 5-38 (52)
79 4abm_A Charged multivesicular 55.7 33 0.0011 24.9 6.2 27 171-197 37-63 (79)
80 3m9b_A Proteasome-associated A 55.3 14 0.00046 32.8 4.7 37 189-225 53-89 (251)
81 2bni_A General control protein 54.9 13 0.00043 23.7 3.2 28 198-225 2-29 (34)
82 1jnm_A Proto-oncogene C-JUN; B 54.8 9.7 0.00033 26.1 3.0 32 190-221 29-60 (62)
83 1kd8_A GABH AIV, GCN4 acid bas 54.6 9.5 0.00032 24.5 2.6 26 199-224 3-28 (36)
84 4dzn_A Coiled-coil peptide CC- 54.1 22 0.00076 22.0 4.2 25 200-224 5-29 (33)
85 3vmx_A Voltage-gated hydrogen 53.5 44 0.0015 22.6 6.0 35 188-222 9-43 (48)
86 2wt7_A Proto-oncogene protein 53.1 33 0.0011 23.6 5.5 32 190-221 30-61 (63)
87 1dh3_A Transcription factor CR 52.7 50 0.0017 22.3 6.9 27 199-225 24-50 (55)
88 2wvr_A Geminin; DNA replicatio 51.9 71 0.0024 27.5 8.5 37 184-220 116-152 (209)
89 2dgc_A Protein (GCN4); basic d 51.6 22 0.00076 24.7 4.5 25 200-224 33-57 (63)
90 2hy6_A General control protein 51.5 16 0.00053 23.3 3.2 28 198-225 2-29 (34)
91 2er8_A Regulatory protein Leu3 50.8 8.5 0.00029 26.2 2.2 21 189-209 48-68 (72)
92 2wq1_A General control protein 50.0 19 0.00064 22.7 3.4 26 199-224 2-27 (33)
93 3s4r_A Vimentin; alpha-helix, 49.9 33 0.0011 25.5 5.5 37 189-225 55-91 (93)
94 3s9g_A Protein hexim1; cyclin 49.7 20 0.00068 27.8 4.3 29 193-221 61-89 (104)
95 1am9_A Srebp-1A, protein (ster 48.2 73 0.0025 22.8 8.1 25 200-224 53-77 (82)
96 3cve_A Homer protein homolog 1 48.1 32 0.0011 25.0 5.0 28 191-218 22-49 (72)
97 1wlq_A Geminin; coiled-coil; 2 46.4 89 0.0031 23.3 7.4 19 191-209 46-64 (83)
98 2wg5_A General control protein 45.8 19 0.00066 27.3 3.7 26 192-217 9-34 (109)
99 1nkp_B MAX protein, MYC proto- 45.7 19 0.00065 25.7 3.5 25 200-224 50-74 (83)
100 3v86_A De novo design helix; c 45.3 38 0.0013 20.1 4.0 22 202-223 5-26 (27)
101 1nkp_A C-MYC, MYC proto-oncoge 45.3 26 0.00087 25.8 4.2 23 195-217 64-86 (88)
102 2jee_A YIIU; FTSZ, septum, coi 44.9 36 0.0012 25.2 4.9 19 190-208 27-45 (81)
103 1a93_B MAX protein, coiled coi 44.8 33 0.0011 21.7 4.0 24 193-216 10-33 (34)
104 2w6a_A ARF GTPase-activating p 44.5 45 0.0015 23.7 5.1 11 175-185 18-28 (63)
105 3efg_A Protein SLYX homolog; x 44.4 51 0.0017 23.9 5.6 18 190-207 14-31 (78)
106 2zqm_A Prefoldin beta subunit 44.3 53 0.0018 24.0 5.9 28 194-221 81-108 (117)
107 2zqm_A Prefoldin beta subunit 43.6 52 0.0018 24.1 5.7 28 189-216 83-110 (117)
108 3v86_A De novo design helix; c 43.3 26 0.00089 20.8 3.1 25 192-216 2-26 (27)
109 1ses_A Seryl-tRNA synthetase; 43.1 45 0.0015 30.7 6.4 49 173-222 48-96 (421)
110 3tq2_A KE1; parallel three hel 42.7 61 0.0021 20.3 5.3 32 193-224 4-35 (36)
111 1wle_A Seryl-tRNA synthetase; 42.6 1.2E+02 0.0042 28.8 9.4 50 173-222 90-148 (501)
112 2akf_A Coronin-1A; coiled coil 42.5 33 0.0011 21.2 3.6 28 194-221 3-30 (32)
113 3s4r_A Vimentin; alpha-helix, 42.2 45 0.0015 24.8 5.1 21 198-218 24-44 (93)
114 3mq7_A Bone marrow stromal ant 41.8 87 0.003 24.9 6.9 30 192-221 73-102 (121)
115 2xdj_A Uncharacterized protein 41.8 1E+02 0.0035 22.6 7.5 32 193-224 23-54 (83)
116 1fxk_A Prefoldin; archaeal pro 41.7 64 0.0022 23.3 5.9 29 193-221 75-103 (107)
117 2r2v_A GCN4 leucine zipper; co 41.7 30 0.001 22.0 3.4 27 198-224 2-28 (34)
118 3o0z_A RHO-associated protein 41.6 75 0.0026 26.5 6.9 29 183-211 83-111 (168)
119 3mq9_A Bone marrow stromal ant 41.3 44 0.0015 30.1 6.0 27 198-224 444-470 (471)
120 3ghg_A Fibrinogen alpha chain; 41.2 53 0.0018 32.1 6.7 42 181-222 101-142 (562)
121 2zxx_A Geminin; coiled-coil, c 41.0 32 0.0011 25.4 4.1 34 191-224 35-68 (79)
122 2xus_A Breast cancer metastasi 40.8 35 0.0012 23.2 3.9 38 183-224 3-45 (49)
123 3m91_A Proteasome-associated A 40.8 82 0.0028 21.3 5.8 35 190-224 16-50 (51)
124 2pnv_A Small conductance calci 40.0 73 0.0025 20.9 5.3 32 192-223 11-42 (43)
125 2dq0_A Seryl-tRNA synthetase; 39.7 67 0.0023 30.0 7.1 50 173-222 51-101 (455)
126 1uii_A Geminin; human, DNA rep 39.3 1.2E+02 0.004 22.6 8.1 32 186-217 49-80 (83)
127 1fxk_A Prefoldin; archaeal pro 39.2 66 0.0023 23.2 5.7 25 190-214 79-103 (107)
128 3hnw_A Uncharacterized protein 38.7 52 0.0018 26.1 5.4 19 202-220 108-126 (138)
129 3w03_C DNA repair protein XRCC 38.5 55 0.0019 27.5 5.7 27 192-218 154-180 (184)
130 3a2a_A Voltage-gated hydrogen 38.4 25 0.00087 24.6 3.0 20 192-211 27-46 (58)
131 3ljm_A Coil Ser L9C; de novo d 38.0 62 0.0021 19.7 4.3 25 193-217 4-28 (31)
132 3hnw_A Uncharacterized protein 38.0 63 0.0022 25.6 5.7 34 188-221 101-134 (138)
133 1wlq_A Geminin; coiled-coil; 2 37.6 58 0.002 24.4 5.0 33 190-222 38-70 (83)
134 3ol1_A Vimentin; structural ge 37.0 68 0.0023 24.6 5.6 7 211-217 69-75 (119)
135 1g6u_A Domain swapped dimer; d 36.9 57 0.002 21.6 4.4 25 199-223 22-46 (48)
136 2v71_A Nuclear distribution pr 36.6 90 0.0031 26.3 6.8 42 183-224 35-76 (189)
137 2pnv_A Small conductance calci 36.5 33 0.0011 22.6 3.2 26 191-216 17-42 (43)
138 4emc_C Monopolin complex subun 36.4 8.7 0.0003 27.5 0.4 11 67-77 27-37 (70)
139 2zvf_A Alanyl-tRNA synthetase; 36.4 39 0.0013 26.4 4.3 28 194-221 29-56 (171)
140 3oja_A Leucine-rich immune mol 36.3 1.4E+02 0.0047 26.9 8.4 35 186-220 431-465 (487)
141 1s1c_X RHO-associated, coiled- 35.9 48 0.0017 24.0 4.3 27 195-221 4-30 (71)
142 3w03_C DNA repair protein XRCC 35.8 56 0.0019 27.5 5.3 34 189-222 144-177 (184)
143 1gmj_A ATPase inhibitor; coile 35.5 1.4E+02 0.0047 22.3 7.5 29 190-218 51-79 (84)
144 3qne_A Seryl-tRNA synthetase, 34.8 84 0.0029 29.9 6.9 50 173-222 53-103 (485)
145 2wt7_B Transcription factor MA 34.1 74 0.0025 23.9 5.2 25 200-224 51-75 (90)
146 3he5_A Synzip1; heterodimeric 33.9 60 0.0021 21.6 4.1 32 192-223 12-43 (49)
147 2w6a_A ARF GTPase-activating p 33.3 1.3E+02 0.0044 21.3 7.0 30 193-222 23-52 (63)
148 3kin_B Kinesin heavy chain; mo 33.2 72 0.0025 24.4 5.2 13 208-220 100-112 (117)
149 1gk7_A Vimentin; intermediate 32.7 97 0.0033 19.7 5.8 18 197-214 20-37 (39)
150 1g6u_A Domain swapped dimer; d 32.6 63 0.0021 21.4 4.0 28 190-217 20-47 (48)
151 4h22_A Leucine-rich repeat fli 32.6 98 0.0034 23.9 5.8 27 191-217 38-64 (103)
152 4b4t_K 26S protease regulatory 30.5 57 0.0019 30.2 4.9 29 196-224 62-90 (428)
153 2l5g_A GPS2 protein, G protein 30.2 59 0.002 21.0 3.5 20 189-208 14-33 (38)
154 2fxo_A Myosin heavy chain, car 30.2 1E+02 0.0034 23.8 5.6 35 190-224 83-117 (129)
155 3qh9_A Liprin-beta-2; coiled-c 30.1 1.2E+02 0.0042 22.4 5.7 31 192-222 35-65 (81)
156 1fxk_C Protein (prefoldin); ar 28.9 1.2E+02 0.004 23.0 5.7 12 63-74 30-41 (133)
157 2ve7_A Kinetochore protein HEC 28.8 86 0.0029 27.8 5.6 22 198-219 186-207 (315)
158 3mq9_A Bone marrow stromal ant 28.5 1.3E+02 0.0045 26.9 6.9 25 192-216 445-469 (471)
159 1nlw_A MAD protein, MAX dimeri 28.5 1.1E+02 0.0037 22.0 5.1 26 199-224 49-74 (80)
160 3he4_A Synzip6; heterodimeric 28.3 37 0.0013 23.1 2.4 29 192-220 26-54 (56)
161 1a93_B MAX protein, coiled coi 28.0 1.2E+02 0.004 19.2 4.6 27 197-223 7-33 (34)
162 3he4_B Synzip5; heterodimeric 27.8 85 0.0029 20.6 4.0 19 192-210 5-23 (46)
163 3vmx_A Voltage-gated hydrogen 27.5 79 0.0027 21.4 3.9 21 191-211 19-39 (48)
164 2ve7_C Kinetochore protein NUF 26.8 1.1E+02 0.0038 26.3 5.9 29 193-221 151-179 (250)
165 3viq_B Mating-type switching p 25.2 62 0.0021 24.2 3.4 24 194-217 5-28 (85)
166 2w83_C C-JUN-amino-terminal ki 25.0 1.3E+02 0.0045 22.1 5.0 31 193-223 33-63 (77)
167 3lss_A Seryl-tRNA synthetase; 24.6 2.5E+02 0.0085 26.6 8.3 23 199-221 113-135 (484)
168 3swk_A Vimentin; cytoskeleton, 24.2 1E+02 0.0035 22.5 4.4 29 193-221 3-31 (86)
169 3q4f_C DNA repair protein XRCC 24.2 1.2E+02 0.004 25.7 5.3 27 193-219 157-183 (186)
170 2dfs_A Myosin-5A; myosin-V, in 23.4 2.7E+02 0.0092 28.9 8.8 28 191-218 985-1012(1080)
171 3mq7_A Bone marrow stromal ant 23.4 1.1E+02 0.0037 24.3 4.6 27 198-224 72-98 (121)
172 2ocy_A RAB guanine nucleotide 23.3 1.4E+02 0.0047 24.4 5.4 12 213-224 131-142 (154)
173 1hwt_C Protein (heme activator 22.9 32 0.0011 23.6 1.4 22 188-209 56-77 (81)
174 2aze_A Transcription factor DP 22.6 1.8E+02 0.0063 23.8 6.0 25 186-210 22-49 (155)
175 1t6f_A Geminin; coiled-coil, c 22.5 1.1E+02 0.0037 19.7 3.6 19 199-217 16-34 (37)
176 4g2k_A General control protein 22.5 1.1E+02 0.0037 24.4 4.5 32 189-220 41-76 (125)
177 3coq_A Regulatory protein GAL4 22.1 77 0.0026 21.8 3.3 21 189-209 44-64 (89)
178 1jcd_A Major outer membrane li 22.0 1.4E+02 0.0049 20.2 4.5 28 192-219 13-40 (52)
179 2jo8_A Serine/threonine-protei 21.7 1.6E+02 0.0056 20.0 4.7 30 192-224 12-41 (51)
180 3vkg_A Dynein heavy chain, cyt 21.6 2.7E+02 0.0093 32.6 9.0 30 188-217 2033-2062(3245)
181 2v71_A Nuclear distribution pr 21.5 1.1E+02 0.0038 25.8 4.6 22 200-221 91-112 (189)
182 1l8d_A DNA double-strand break 20.8 1.8E+02 0.006 21.2 5.2 22 192-213 80-101 (112)
183 4ati_A MITF, microphthalmia-as 20.8 78 0.0027 24.3 3.3 17 188-204 72-88 (118)
184 3cve_A Homer protein homolog 1 20.7 1.7E+02 0.0059 21.0 4.9 26 170-195 21-47 (72)
185 1deq_A Fibrinogen (alpha chain 20.6 2.7E+02 0.0093 26.0 7.4 35 186-220 109-143 (390)
186 3rrk_A V-type ATPase 116 kDa s 20.4 1.7E+02 0.0057 25.4 5.8 28 192-219 101-128 (357)
187 2ve7_C Kinetochore protein NUF 20.3 63 0.0022 27.9 3.0 58 168-225 119-176 (250)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.59 E-value=3.5e-15 Score=105.90 Aligned_cols=57 Identities=32% Similarity=0.402 Sum_probs=55.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|++++.+|++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999975
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.57 E-value=8.1e-15 Score=104.97 Aligned_cols=57 Identities=30% Similarity=0.461 Sum_probs=55.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
|+.+|++|||+||++||+||++|+.+|+.++..|+.+|..|..++..|++++.+|+.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999874
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.54 E-value=1.5e-14 Score=102.99 Aligned_cols=57 Identities=35% Similarity=0.429 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
|.++|++|||+||++||+|||+|+.+||.+|..|+.+|..|..++..|+.++.+|++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999985
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.53 E-value=1.1e-14 Score=102.21 Aligned_cols=55 Identities=75% Similarity=1.100 Sum_probs=52.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
|+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|+++++++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~~ 55 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999999999999999999999988763
No 5
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=99.41 E-value=1.1e-14 Score=89.96 Aligned_cols=26 Identities=58% Similarity=0.842 Sum_probs=21.4
Q ss_pred ccccccccccCchHHHHhhhcccccc
Q psy1987 54 SKRRDITLTRRPSYRKILNDLRGAEI 79 (226)
Q Consensus 54 ~k~r~~iLsRRPSYRKIlnelss~~~ 79 (226)
.++|++||+||||||||||||||+++
T Consensus 3 ~~krr~iL~rrpSYrkIlndls~~~~ 28 (28)
T 1kdx_B 3 SQKRREILSRRPSYRKILNDLSSDAP 28 (28)
T ss_dssp HHHHHHHHTTSTHHHHHHHHHHHHCC
T ss_pred hhhhhhhhhcCchHHHHHHhhccCCC
Confidence 34555569999999999999999864
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.41 E-value=3e-13 Score=97.28 Aligned_cols=57 Identities=32% Similarity=0.405 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 166 QSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 166 ~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
...+.++++.|||+||++||.||++|+.+||.+|+.|+.+|..|..++..|++++++
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677889999999999999999999999999999999999999999999875
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.35 E-value=1.7e-12 Score=93.07 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=49.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
|+.++++|||+||++||+|||+++.+|+.++..|+.+|..|..++..|+.++..|++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999874
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=99.06 E-value=5.4e-10 Score=83.63 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+....+...|+.||.+||++||.++|.+...++.++..|+.+|..|+.++..|+.++..|++
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788889999999999999999999999999999999999999999999999998874
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.02 E-value=9.3e-10 Score=83.91 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+.++.+...|+.||.+||++||.++|....+++.++..|+.+|..|+.++..|+.++..|+.
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788889999999999999999999999999999999999999999999999988763
No 10
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.71 E-value=2.9e-08 Score=72.95 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=46.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 171 EMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 171 erRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+|+..||.|++.+|.||+.||.+||.+|..|+..|..|..++..|+..+..|.
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998877777777777777666554
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.63 E-value=2.6e-09 Score=84.27 Aligned_cols=62 Identities=31% Similarity=0.246 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+....|..||..|||.||+.||.||.+.+.+||.++..|..+...|..|+..|+.++..+|.
T Consensus 32 e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 32 EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999988887777777777777777666655543
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.51 E-value=5.5e-07 Score=69.09 Aligned_cols=59 Identities=31% Similarity=0.294 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 166 QSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 166 ~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
...|..||..|||.+|+.||.||.+....||.++..|..+...|+.++..+..+...+|
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999988887777777777777766665554
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=97.69 E-value=1.2e-05 Score=61.71 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1987 167 SRKREMRLLKNREAAKECRRKKKEYIKCLEN 197 (226)
Q Consensus 167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~ 197 (226)
..+..||+.|||+||++||+||.+.+++|+.
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4578899999999999999999999888763
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=96.79 E-value=0.0062 Score=43.17 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 171 EMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDEL 213 (226)
Q Consensus 171 erRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el 213 (226)
++.+.|||+|+++||.|=|..++....-.+.-.+||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 4567899999999999999999988887777788888776544
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0042 Score=41.50 Aligned_cols=36 Identities=36% Similarity=0.441 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
|.|+.+||.+++.|+..|.+|.+.+..|+++..-|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 689999999999999999999999999988876654
No 16
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=96.45 E-value=0.00011 Score=56.39 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1987 167 SRKREMRLLKNREAAKECRRKKKEY 191 (226)
Q Consensus 167 e~KrerRl~KNR~AA~kcR~RKKey 191 (226)
-.+..||+-|||+||+.||+||.+.
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3578889999999999999999764
No 17
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=96.16 E-value=0.0075 Score=38.59 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
++|..||.+|+.|-.+|..|..++..|++++.
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 46899999999999999999999999999875
No 18
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=95.88 E-value=0.014 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
++|..||.+|+.|-.+|..|..++..|++++..-|
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 46889999999999999999999999999887543
No 19
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=95.87 E-value=0.0073 Score=38.47 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+|..||.+|+.|-.+|..|..|+..|++++.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999875
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=95.63 E-value=0.018 Score=36.84 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
++|..||.+|+.|-.+|..|..|+..|++++.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999874
No 21
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=95.44 E-value=0.016 Score=37.49 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
++|..||.+|+.|..+|..|..++..|++++..
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999998753
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=95.32 E-value=0.026 Score=35.84 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+|..||.+|+.|-.+|..|..|+..|++++.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999874
No 23
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=95.03 E-value=0.022 Score=36.42 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
++|..||.+|+.|-.+|..|..|+..|++++.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999998764
No 24
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=94.89 E-value=0.026 Score=36.10 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+|..||.+|+.|-.+|..|..|+..|++++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999998864
No 25
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=94.69 E-value=0.05 Score=34.56 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+|..||.+|+.|-.+|..|..|+..|++++.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999998864
No 26
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=94.67 E-value=0.046 Score=34.93 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
++..||.+|+.|-.+|..|..++..|++++.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999998874
No 27
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=92.73 E-value=0.19 Score=32.06 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
++..||.+|+.|-++|..|..|+..|++++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999998874
No 28
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=91.99 E-value=0.0031 Score=48.30 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy1987 168 RKREMRLLKNREAAKECRRKKKE 190 (226)
Q Consensus 168 ~KrerRl~KNR~AA~kcR~RKKe 190 (226)
.+..||+-|||+||+.||+||.+
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHhhhhHHHHHHcchhhcc
Confidence 46788999999999999999865
No 29
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.41 E-value=0.81 Score=34.46 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.|-|.+++.--.--...+.+|+.+...|..+...|..|+..|+.++.++.
T Consensus 28 rrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 35555554444555678899999999999999999999999999998764
No 30
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=90.98 E-value=0.52 Score=34.60 Aligned_cols=37 Identities=30% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+-.+||..|+.+...|..++..|+.++..|+..+.+|
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4569999999999999999999999999999988765
No 31
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.71 E-value=0.41 Score=32.16 Aligned_cols=31 Identities=39% Similarity=0.439 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.+..||++|+.|+++|..|+..+-.-++++.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdlia 34 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIA 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHH
Confidence 4678999999999999999877655555444
No 32
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=90.35 E-value=0.66 Score=33.64 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+--+||..|+.++..|+.+...|+.++..|+..+..|.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34589999999999999999999999999999988764
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.88 E-value=0.66 Score=34.28 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.|-|.+++.--.--...+.+|+.+...|..+...|..++..|+.++.++.
T Consensus 28 krSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35566655555566678999999999999999999999999999987764
No 34
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=87.51 E-value=1.4 Score=32.65 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+--+||..|+.+...|..+...|..+...|+..+.+|+.
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456899999999999988888899999999988888763
No 35
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=84.10 E-value=1.3 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
--+||..|+.++..|+.+|..|+.+++..+
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 347888888888888888888887776654
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=84.04 E-value=2.6 Score=28.04 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDEL 213 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el 213 (226)
..+||+++..|++||..|++-+
T Consensus 19 naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 4566666666666666666544
No 37
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=81.40 E-value=2.9 Score=25.99 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+..||.+|+..+.+|-+|.+++..|..++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 56789999999999999999998887664
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.57 E-value=2.2 Score=30.82 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+..|+.....|..+|..|+.++..|..++..|+
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34678898899999999999999999999988764
No 39
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.44 E-value=2 Score=29.58 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
++++.+...++.|..+|..|++++..|++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888889999999999999888764
No 40
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=79.18 E-value=2.1 Score=31.79 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
++.|.+++..|+..|.+|..|+..||..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555544
No 41
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=75.42 E-value=3.9 Score=24.60 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 200 AILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
..|+.+|..|.+.+..|++.+..||+
T Consensus 3 dalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHhccHHHHHHHHHHHHHHHHhcC
Confidence 35778888888888888888887764
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.11 E-value=4.7 Score=30.09 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 195 LENRVAILENQNKALIDELKS 215 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~ 215 (226)
|.-+++.|..+|..|.+++..
T Consensus 25 LqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 43
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=75.08 E-value=4.6 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.|-.+|++|..||..|+.|++.--.++..|.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 56677788888888888888766555554443
No 44
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=74.47 E-value=18 Score=26.98 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
++.+.+-++-=.+-+.-...++.++...+..|..|..++..|+.+...|+.
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444444445556666777888889999999999999999998887653
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.66 E-value=7 Score=27.20 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..++.|+.+...|+.+...|..|+..|++++.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998875
No 46
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=73.58 E-value=7.3 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+-.+.|..++..|+.++..|++++..|+++..+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788889999999999999998887764
No 47
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.90 E-value=7.7 Score=26.53 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..++.|+.+...|..+...|..++..|+.++.
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999988763
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.59 E-value=7 Score=26.65 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 195 LENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
|..+.+.|..++..|.+++..|+..+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 49
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=72.56 E-value=5.5 Score=24.43 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+.|-.-++.|+.+|++|+..+..|-..+
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667889999999999988876554
No 50
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.49 E-value=5.6 Score=27.13 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 197 NRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 197 ~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..++.|..+|.+|+.++..|++++..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666655443
No 51
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.33 E-value=11 Score=27.49 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
|.+.|+.||.++...+.+.+.|+.++..++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566778888888888887777777776654
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=71.79 E-value=7.5 Score=26.53 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+|..++..|...|..|.+-|+..+.++..|+
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666555544444444444433
No 53
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=70.19 E-value=6.8 Score=28.24 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.|.+.|.+||..+..-..++.+|+.++..++..+.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47788999999999999999999999988876653
No 54
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.55 E-value=6.2 Score=28.87 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
++|-+.+...+..++.|+.+..++..++..|+.++-.++
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677899999999999999999999999999886654
No 55
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.01 E-value=24 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
-..+..|+.+++.|..+|..|+.+....+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356889999999999999999999887664
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.98 E-value=3.4 Score=36.65 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+..|+.+.+.|....+.|+.|+..|++++.+|+
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455555555555666666666655554
No 57
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=68.26 E-value=4.3 Score=30.10 Aligned_cols=24 Identities=33% Similarity=0.319 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDE 212 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~e 212 (226)
|+.|.+|+.++..||.||.-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999999888753
No 58
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.36 E-value=5.5 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
..+||....+|..++..|++++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457888889999999999999988863
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=67.30 E-value=6 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
++.+|+....+|..+...|++++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667788888888888888888877763
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.54 E-value=12 Score=28.80 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+..|..+++.|+.+|..|++++..|.-.+.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999888776
No 61
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=66.00 E-value=4.9 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDEL 213 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el 213 (226)
..|++.|+.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999998888877776654
No 62
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=65.32 E-value=23 Score=26.25 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
..+..+...+..|..+|..|.+-+...+.+.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666665554444444443
No 63
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.59 E-value=7.9 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+..+||....+|..+...|+.++.+|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4567888888899999999998888763
No 64
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=63.52 E-value=8.5 Score=24.45 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+..+||....+|..+...|.+++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678888889999999999999988863
No 65
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=61.75 E-value=8.2 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+..+||....+|..++..|.+++..||.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888999999999999999988873
No 66
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=60.72 E-value=9 Score=22.99 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 201 ILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 201 ~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.|...|..|++++..|.-++..|.
T Consensus 4 rlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc
Confidence 455666777777777766666553
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.47 E-value=34 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy1987 205 QNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 205 eN~~L~~el~~Lk~~~~ql 223 (226)
...+|++++..++.++.+|
T Consensus 559 ~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.31 E-value=40 Score=31.07 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+++..+.|+.++..++.+.+..++++..|+++..+++
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3344455555555555555555556666665555543
No 69
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=60.28 E-value=32 Score=22.66 Aligned_cols=30 Identities=37% Similarity=0.356 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
-|.|+++||.+.+.|.+-..-|+---..|.
T Consensus 8 lknyiqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 356888888887777665444443333333
No 70
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=60.13 E-value=11 Score=23.85 Aligned_cols=27 Identities=4% Similarity=0.062 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
..+||....+|..+...|.+++..||.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467888888888888888888888763
No 71
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.63 E-value=8.2 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALID 211 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~ 211 (226)
-+||..|+.++..|+.++..|+.
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555554444443
No 72
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=58.93 E-value=5.5 Score=31.36 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~ 214 (226)
.-+++|..++..|+-||+.|+.++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999998875
No 73
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=57.63 E-value=32 Score=24.09 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
|+--..|-.+|..|+.++.+..+|+..|..++.+
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667778889999999999999998888764
No 74
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=57.36 E-value=28 Score=25.96 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+++.+.|.+...|+..|..|...++.|..+.
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4455668888889999999999888887654
No 75
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=57.27 E-value=18 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.|..++..|+.++..|++++..|+++..+.
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666665555555443
No 76
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.50 E-value=23 Score=24.19 Aligned_cols=45 Identities=40% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 174 LLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 174 l~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+|||+|- |...-..||+-|+.|++.|..|...+..|...+.+|.
T Consensus 7 qlknrvay------klkenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 7 QLKNRVAY------KLKENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp ----CCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 35666653 2333456888899999999999988888888777664
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.89 E-value=39 Score=35.01 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.++|+.++..|+++|..|++++..|...+..
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888888888888888888754443
No 78
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.80 E-value=23 Score=24.22 Aligned_cols=34 Identities=0% Similarity=-0.080 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.++.|..+|..|..+...|..++..|+..+..-|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777787777777777777777777665444
No 79
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=55.70 E-value=33 Score=24.95 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1987 171 EMRLLKNREAAKECRRKKKEYIKCLEN 197 (226)
Q Consensus 171 erRl~KNR~AA~kcR~RKKeyi~~LE~ 197 (226)
....-+|+-+|..|=+|||-|-..|+.
T Consensus 37 k~~~~knK~~Al~aLkrKK~~E~qL~q 63 (79)
T 4abm_A 37 KKHGTKNKRAALQALKRKKRYEKQLAQ 63 (79)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHhHHHHHHHH
Confidence 334568888999999999887555544
No 80
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=55.30 E-value=14 Score=32.77 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
-+++.+|+.++..|..+|..|.++++.|+.++..||.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777776664
No 81
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=54.92 E-value=13 Score=23.67 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+..+||....+|..+...|.+++..||.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4567888888999999999999988863
No 82
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.76 E-value=9.7 Score=26.15 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..+..|+.+...|..+...|..++..|+.++.
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888888877653
No 83
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=54.56 E-value=9.5 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.228 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.+|+....+|..+...|.+++..|+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455555555555555555555554
No 84
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=54.11 E-value=22 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.|..+...|+.++..|+=++..||
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444
No 85
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.47 E-value=44 Score=22.64 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
=|+-...|-.+|..|+..+..+.+|+..|+.++.+
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34555677788888888888899998888887754
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.11 E-value=33 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..++.|+.+...|..+...|..++..|+..+.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888877664
No 87
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.73 E-value=50 Score=22.26 Aligned_cols=27 Identities=30% Similarity=0.185 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
+..|+.+...|..++..|+.++..|..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999988865
No 88
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=51.86 E-value=71 Score=27.54 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 184 CRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 184 cR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
--++=.+.|+.|+.++..|..+|..|++=...++.+.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456789999999999999988766555544443
No 89
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=51.63 E-value=22 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..|+.+-..|..++..|+.++.+|+
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 90
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=51.47 E-value=16 Score=23.25 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
++.+|+....+|..+...|.+++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888888888887763
No 91
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=50.76 E-value=8.5 Score=26.19 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKAL 209 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L 209 (226)
+.|+..||.+++.|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887766554
No 92
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.00 E-value=19 Score=22.75 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+||....+|..+...|.+++..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46788888888888888888888776
No 93
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.93 E-value=33 Score=25.50 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
-.+|.+|...+..+..+|..|.-++..|.+.+..+|.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888999999999999999999888877763
No 94
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.68 E-value=20 Score=27.84 Aligned_cols=29 Identities=31% Similarity=0.117 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
...-.++..|+.+...|+.+++.|+.+-.
T Consensus 61 ~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 61 KRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777788888888888877776543
No 95
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=48.25 E-value=73 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..|+.++..|.+++..|+..+.+.+
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4688899999999999998877644
No 96
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.12 E-value=32 Score=24.97 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
.+..||.+++.-..+-..++.+++.+-+
T Consensus 22 ~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 22 QLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333233334444444433
No 97
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=46.39 E-value=89 Score=23.31 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKAL 209 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L 209 (226)
.++.++.++..|..+|..|
T Consensus 46 ~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 98
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.84 E-value=19 Score=27.33 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
++.|+.+...|..+...|+++++.|+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666655
No 99
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.75 E-value=19 Score=25.70 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..|+.++..|..++..|+.+...|+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666655555543
No 100
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=45.33 E-value=38 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy1987 202 LENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 202 Le~eN~~L~~el~~Lk~~~~ql 223 (226)
|..+.-+|+.++..|+.++..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444445555555555555544
No 101
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.30 E-value=26 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 195 LENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
|+..++.|..+|..|+.++..|+
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555556665555553
No 102
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.94 E-value=36 Score=25.25 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKA 208 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~ 208 (226)
..+++|..+...|..+|..
T Consensus 27 mEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555
No 103
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.80 E-value=33 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
......++.|+.+|..|.+++..|
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344556777777777777776554
No 104
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.53 E-value=45 Score=23.70 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=7.4
Q ss_pred HHhHHHHHHHH
Q psy1987 175 LKNREAAKECR 185 (226)
Q Consensus 175 ~KNR~AA~kcR 185 (226)
.||-+||++.|
T Consensus 18 vK~ALaaSeAk 28 (63)
T 2w6a_A 18 LKKALATSEAK 28 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhHHH
Confidence 57778887543
No 105
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.44 E-value=51 Score=23.86 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNK 207 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~ 207 (226)
+++.+||.+++.++.-..
T Consensus 14 ~Ri~~LE~klAfqE~tIe 31 (78)
T 3efg_A 14 ARLVELETRLSFQEQALT 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666766655444333
No 106
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.32 E-value=53 Score=24.05 Aligned_cols=28 Identities=39% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.++..++.|+.+...+..++..|+..+.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555443
No 107
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.57 E-value=52 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
...++.|+.+...++.+-..|+.++..+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777666544
No 108
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=43.26 E-value=26 Score=20.81 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
+-.|..+|-.|.-+...|+.+++.|
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 3456666777777777777777665
No 109
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.05 E-value=45 Score=30.75 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 173 RLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 173 Rl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+||.++..-.. ++++-.+.|-.++..|..+.+.|.+++..+.+.+..
T Consensus 48 ~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 48 QTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666644332 445556677777777777777777777777766653
No 110
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=42.68 E-value=61 Score=20.34 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..|.++|..|.++--.|.-.+..|++.+..||
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666677777777777665
No 111
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.56 E-value=1.2e+02 Score=28.76 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 173 RLLKNREAAKECRRKKK---------EYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 173 Rl~KNR~AA~kcR~RKK---------eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+||.++..--..+|+ +..+.|-.++..|..+.+.|.+++..+.+++..
T Consensus 90 ~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 90 EEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677776554432222 355566677777777777777777776666543
No 112
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.47 E-value=33 Score=21.24 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.||+.+..|..-.++|.+.+..|.+-+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777777777778887777776654
No 113
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.17 E-value=45 Score=24.79 Aligned_cols=21 Identities=52% Similarity=0.724 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 198 RVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~ 218 (226)
+|..||.+|+.|..++..|+.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 356677777777666655553
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.78 E-value=87 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+++|+.++..|..+.+....++..|+....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 666666666666665555666666655543
No 115
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.76 E-value=1e+02 Score=22.60 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
-+|..++..|..+...|+-+++.+...+.+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.69 E-value=64 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.++.+++.|+.+...+..++..|+..+.
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666665544
No 117
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=41.67 E-value=30 Score=21.96 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+..+|+....+|..+...|.+++..|+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356777788888888888888887765
No 118
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.60 E-value=75 Score=26.46 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 183 ECRRKKKEYIKCLENRVAILENQNKALID 211 (226)
Q Consensus 183 kcR~RKKeyi~~LE~~v~~Le~eN~~L~~ 211 (226)
..|.+..+.+.+|+.++..|..+...++.
T Consensus 83 ~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 83 RDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655555444433
No 119
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.27 E-value=44 Score=30.07 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+++.||.+..+|..+|+.++.++..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777666554
No 120
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.18 E-value=53 Score=32.08 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 181 AKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 181 A~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+......+.+|.++||.++..|+.+...-...++.||.-+..
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777788888877776655544666666555543
No 121
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=41.01 E-value=32 Score=25.43 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
--..|..++..+..+...|++++..|+++..+.+
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888887776643
No 122
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=40.83 E-value=35 Score=23.19 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhh
Q psy1987 183 ECRRKKKEYIKCLENRVAILENQNKALIDE-----LKSLKELYCQQE 224 (226)
Q Consensus 183 kcR~RKKeyi~~LE~~v~~Le~eN~~L~~e-----l~~Lk~~~~qlk 224 (226)
.|-+||.+.++.| ..|+.+...|+++ +..|+.++..++
T Consensus 3 ~~errr~e~ld~l----~~LEkqF~~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 3 DYERRRSECVSEM----LDLEKQFSELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp --CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777666554 4466666666544 445555554443
No 123
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.78 E-value=82 Score=21.28 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+..|..+...|..-.+.-+.++..|++++..|-
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777788888888888888888888887663
No 124
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.95 E-value=73 Score=20.91 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+.+|..+-+.||+....|..++..|.+.+..|
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555566666666666666676666666544
No 125
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.66 E-value=67 Score=29.97 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 173 RLLKNREAAKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 173 Rl~KNR~AA~kcR-~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+||.++.+--. +++++-.+.|-.++..|..+.+.|.+++..+.+++..
T Consensus 51 ~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 51 RHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777755444 2333555666677777777777777777777666544
No 126
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.31 E-value=1.2e+02 Score=22.65 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
++=.+.+..|+.++..|..+|..|+.-...++
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677888888888888877766555444
No 127
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.16 E-value=66 Score=23.18 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELK 214 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~ 214 (226)
..++.|+.+...++.+-..|+..+.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665553
No 128
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.73 E-value=52 Score=26.11 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 202 LENQNKALIDELKSLKELY 220 (226)
Q Consensus 202 Le~eN~~L~~el~~Lk~~~ 220 (226)
+..++..|++++..|+..+
T Consensus 108 ~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333
No 129
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.49 E-value=55 Score=27.54 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
+..|..++..|+.+|..|..+.....+
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544433
No 130
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.41 E-value=25 Score=24.61 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALID 211 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~ 211 (226)
+..||......+.|+..|..
T Consensus 27 v~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 131
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=38.01 E-value=62 Score=19.71 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
+.||.+.+.|++..+.|...+..|.
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777776654
No 132
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.98 E-value=63 Score=25.61 Aligned_cols=34 Identities=6% Similarity=0.027 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.+..++.++.+++.|..++..|..++..|...+.
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666655443
No 133
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.57 E-value=58 Score=24.35 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+-.+.|...+..+..+...|++++..|+++-.+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667888888889999999999888887655
No 134
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.01 E-value=68 Score=24.61 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy1987 211 DELKSLK 217 (226)
Q Consensus 211 ~el~~Lk 217 (226)
.++..|+
T Consensus 69 ~di~~lr 75 (119)
T 3ol1_A 69 NTLQSFR 75 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 135
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.91 E-value=57 Score=21.59 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
++.|+++.+.|...+..|+..+..|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555444443
No 136
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.64 E-value=90 Score=26.30 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 183 ECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 183 kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.+..--+++=.+||..+..+++.|..|...+..|+.++..+|
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777766665543
No 137
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.46 E-value=33 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
+-+.||.++..||.....|.+.+..|
T Consensus 17 r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34678888888888888888777643
No 138
>4emc_C Monopolin complex subunit MAM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae}
Probab=36.43 E-value=8.7 Score=27.54 Aligned_cols=11 Identities=55% Similarity=0.794 Sum_probs=8.9
Q ss_pred HHHHhhhcccc
Q psy1987 67 YRKILNDLRGA 77 (226)
Q Consensus 67 YRKIlnelss~ 77 (226)
-||||||||..
T Consensus 27 a~kilndlsat 37 (70)
T 4emc_C 27 ARKVLNDLSAT 37 (70)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHhhhccc
Confidence 38999999843
No 139
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.42 E-value=39 Score=26.45 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+|..+++.|..++++|..++..|+..+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666667666666666544
No 140
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.27 E-value=1.4e+02 Score=26.93 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
.+.+.+++....+...|+++|+.|+.++..+...+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 34445555555555666666666665555554443
No 141
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.87 E-value=48 Score=24.02 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 195 LENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 195 LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
|...+..|..++.+|..+++.+.+++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~ 30 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYK 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 142
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=35.75 E-value=56 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
.++++.+=..+..|..+|..|.+++..|+.+..+
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888899999999999999999999987654
No 143
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.48 E-value=1.4e+02 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
+.++.-..+++.|+.+...++..+..|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444555555555555555555543
No 144
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.78 E-value=84 Score=29.91 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=31.1
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 173 RLLKNREAAKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 173 Rl~KNR~AA~kcR-~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+||.++..-.. ++.++-.+.|-.++..|..+.+.|.+++..+.+++..
T Consensus 53 ~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777654333 2233445666667777777777777777777666543
No 145
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=34.13 E-value=74 Score=23.92 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 200 AILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..||.++..|..++..|+.+...+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777766554
No 146
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.85 E-value=60 Score=21.57 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
+..||++.+.|...|---+.-+..|..++.+|
T Consensus 12 vaslenenetlkkknlhkkdliaylekeianl 43 (49)
T 3he5_A 12 VASLENENETLKKKNLHKKDLIAYLEKEIANL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHhcccHHHHHHHHHHHHHHH
Confidence 45567776666666654444444555554443
No 147
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.34 E-value=1.3e+02 Score=21.34 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
..-|.++..|-.-|..|.+|+..|+..+..
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~ 52 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHK 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 344555666666666666655555544443
No 148
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=33.17 E-value=72 Score=24.43 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy1987 208 ALIDELKSLKELY 220 (226)
Q Consensus 208 ~L~~el~~Lk~~~ 220 (226)
.|+.++..|+.++
T Consensus 100 ~L~~~i~~Le~el 112 (117)
T 3kin_B 100 ALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 149
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=32.66 E-value=97 Score=19.71 Aligned_cols=18 Identities=50% Similarity=0.763 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1987 197 NRVAILENQNKALIDELK 214 (226)
Q Consensus 197 ~~v~~Le~eN~~L~~el~ 214 (226)
.+|..||.+|+.|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667777777766654
No 150
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.59 E-value=63 Score=21.40 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
+.+..||.++..|+.....|+..++.|+
T Consensus 20 eelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888999999998888888888774
No 151
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.58 E-value=98 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
.++++|..+..+..++.+...++..++
T Consensus 38 ~LEe~eE~~aql~Re~~eK~re~e~~K 64 (103)
T 4h22_A 38 MLLELEEQLAESRRQYEEKNKEFEREK 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333
No 152
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.48 E-value=57 Score=30.19 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 196 ENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 196 E~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+.+.+.++++...|..++..+++++..++
T Consensus 62 ~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 62 TLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334445555555555656665555443
No 153
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.24 E-value=59 Score=21.01 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKA 208 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~ 208 (226)
|+.|..|+.++..|.++.-+
T Consensus 14 keQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 154
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.16 E-value=1e+02 Score=23.77 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
..+..|+.+++..+..|..|..+-..|...+..|+
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677766666666666665554
No 155
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.06 E-value=1.2e+02 Score=22.44 Aligned_cols=31 Identities=29% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQ 222 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q 222 (226)
+.+||++--+.+...+.=++++..|+.+++.
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444554444444445555666666666554
No 156
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.88 E-value=1.2e+02 Score=22.95 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=5.8
Q ss_pred cCchHHHHhhhc
Q psy1987 63 RRPSYRKILNDL 74 (226)
Q Consensus 63 RRPSYRKIlnel 74 (226)
.-|-|.+-++.|
T Consensus 30 ~i~e~~~~~e~l 41 (133)
T 1fxk_C 30 TISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555554444
No 157
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.75 E-value=86 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 198 RVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
+++.|+.+|..|.+|++.|+.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 158
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.50 E-value=1.3e+02 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSL 216 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~L 216 (226)
|++||.++..|+.+.+.+..+++.|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444433
No 159
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.46 E-value=1.1e+02 Score=22.01 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 199 VAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+..|+.++..|..+...|+.+...|+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655554
No 160
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.31 E-value=37 Score=23.14 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
+..||+.-+.|+.....|...+..|...+
T Consensus 26 varlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 34466666666666666666666665544
No 161
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.01 E-value=1.2e+02 Score=19.18 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 197 NRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 197 ~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
.+......+..+|+.++..|.+++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 445556666666777777777666554
No 162
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.83 E-value=85 Score=20.61 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALI 210 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~ 210 (226)
+++|.+-+..|+..|.+|+
T Consensus 5 vkelknyiqeleernaelk 23 (46)
T 3he4_B 5 VKELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3455555555665555443
No 163
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.55 E-value=79 Score=21.37 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALID 211 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~ 211 (226)
.+..||.....++.|+..|..
T Consensus 19 kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 19 KIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHH
Confidence 456666666666666655544
No 164
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.83 E-value=1.1e+02 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+.+..+++.|..+|++|..++..|++++.
T Consensus 151 e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 151 KSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666666666665555543
No 165
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.25 E-value=62 Score=24.20 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 194 CLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 194 ~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
.|+.+++.|+.+-..|..++..++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 166
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.03 E-value=1.3e+02 Score=22.15 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql 223 (226)
++|=.+|+.|..++..|+.|+..++.-...+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888877776655443
No 167
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.62 E-value=2.5e+02 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 199 VAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
+..|..+.+.|.+++..+.+++.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555554
No 168
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.23 E-value=1e+02 Score=22.45 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
.+|..++..+..+|..|.-++..++..+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443
No 169
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.18 E-value=1.2e+02 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 193 KCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 193 ~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
...=.++..|+.+|..|.+|+..|..+
T Consensus 157 ~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 157 CYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344556666666666666666554
No 170
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.37 E-value=2.7e+02 Score=28.86 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 191 YIKCLENRVAILENQNKALIDELKSLKE 218 (226)
Q Consensus 191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~ 218 (226)
.+..|+.+++.|+.+...+.++.+.|++
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333333
No 171
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.35 E-value=1.1e+02 Score=24.32 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 198 RVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 198 ~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
+++.|+.+++.|.++|+.+-.++.+|.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777776664
No 172
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.34 E-value=1.4e+02 Score=24.45 Aligned_cols=12 Identities=17% Similarity=0.091 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhh
Q psy1987 213 LKSLKELYCQQE 224 (226)
Q Consensus 213 l~~Lk~~~~qlk 224 (226)
+..|+.++..||
T Consensus 131 l~~lq~ql~~LK 142 (154)
T 2ocy_A 131 LDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 173
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.88 E-value=32 Score=23.57 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKAL 209 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L 209 (226)
++.|++.|+.++..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888887665444
No 174
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=22.62 E-value=1.8e+02 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy1987 186 RKKKEYIKCLENRVAI---LENQNKALI 210 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~---Le~eN~~L~ 210 (226)
++|++|+++|..+... |-..|+.+.
T Consensus 22 ~~K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888654 444554443
No 175
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.53 E-value=1.1e+02 Score=19.65 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1987 199 VAILENQNKALIDELKSLK 217 (226)
Q Consensus 199 v~~Le~eN~~L~~el~~Lk 217 (226)
++.-.++...|++++..|+
T Consensus 16 ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3333334444444444443
No 176
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.52 E-value=1.1e+02 Score=24.43 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNK----ALIDELKSLKELY 220 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~----~L~~el~~Lk~~~ 220 (226)
|..+..|+..+..+.++-. .|.+++..++.-+
T Consensus 41 ~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~~ 76 (125)
T 4g2k_A 41 KKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTFS 76 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777776655432 2555555555543
No 177
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.13 E-value=77 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1987 189 KEYIKCLENRVAILENQNKAL 209 (226)
Q Consensus 189 Keyi~~LE~~v~~Le~eN~~L 209 (226)
+.|+..||.++..||.....|
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888776665
No 178
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.98 E-value=1.4e+02 Score=20.17 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
+..|-.+|..|..+...|+.++..-+++
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555544
No 179
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.72 E-value=1.6e+02 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKELYCQQE 224 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk 224 (226)
.++|+.+++.|..+ |..|+..|+..+..+.
T Consensus 12 ~eEL~~rl~~Ld~~---Me~Ei~elr~RY~~KR 41 (51)
T 2jo8_A 12 VEDLQKRLLALDPM---MEQEIEEIRQKYQSKR 41 (51)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHH---HHHHHHHHHHHHHHhH
Confidence 45666766666654 7777777777776654
No 180
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.58 E-value=2.7e+02 Score=32.64 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILENQNKALIDELKSLK 217 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk 217 (226)
+++.+.+||.+++.|+.+-.++..|-+.|+
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333
No 181
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.46 E-value=1.1e+02 Score=25.78 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 200 AILENQNKALIDELKSLKELYC 221 (226)
Q Consensus 200 ~~Le~eN~~L~~el~~Lk~~~~ 221 (226)
..|+.+...|+.....|+..+.
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 182
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.84 E-value=1.8e+02 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDEL 213 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el 213 (226)
+..|..++..|+.+...|..++
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 183
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=20.84 E-value=78 Score=24.31 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1987 188 KKEYIKCLENRVAILEN 204 (226)
Q Consensus 188 KKeyi~~LE~~v~~Le~ 204 (226)
--+||..|+.++..|..
T Consensus 72 aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 72 SVDYIRKLQREQQRAKD 88 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888877766543
No 184
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.68 E-value=1.7e+02 Score=21.03 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHHH
Q psy1987 170 REMRLLKNREAAKE-CRRKKKEYIKCL 195 (226)
Q Consensus 170 rerRl~KNR~AA~k-cR~RKKeyi~~L 195 (226)
...+.+.+++...+ .|.+.+.-++.+
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455554333 333443433333
No 185
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.58 E-value=2.7e+02 Score=26.01 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220 (226)
Q Consensus 186 ~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~ 220 (226)
.+=.+|.++||.++..|......-...|..|+.-+
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNV 143 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33456777788877766654433333444444443
No 186
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.36 E-value=1.7e+02 Score=25.40 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987 192 IKCLENRVAILENQNKALIDELKSLKEL 219 (226)
Q Consensus 192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~ 219 (226)
+..++.++..|..+..+|..++..|++.
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5666666666666666666666666666
No 187
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.29 E-value=63 Score=27.86 Aligned_cols=58 Identities=14% Similarity=-0.027 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987 168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225 (226)
Q Consensus 168 ~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~ 225 (226)
.+|-+|.+-==+==.++|.-+..-.+++-.+.+.+..+.+.|.++++.++..+..++.
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565555443333345666666666677677777777777777777777776666553
Done!