RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1987
(226 letters)
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor. The Pfam entry
includes the basic region and the leucine zipper region.
Length = 64
Score = 74.7 bits (184), Expect = 5e-18
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224
++ KRE R KNREAA+ R +KK YI+ LE +V LE +NK L EL+ LK+ + +
Sbjct: 1 EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60
Query: 225 ME 226
E
Sbjct: 61 SE 62
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 59.1 bits (144), Expect = 4e-12
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220
KR R +NREAA+ R +KK I+ LE +V LE +N+ L E++ L+
Sbjct: 5 KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL 56
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins.
Basic leucine zipper (bZIP) transcription factors act in
networks of homo- and hetero-dimers in the regulation in
a diverse set of cellular pathways. Classical leucine
zippers have alpha helices with leucine residues 7 amino
acids apart, which stabilize dimerization with a
parallel leucine zipper domain. Dimerization creates a
pair of basic regions that bind DNA and undergo
conformational change. GCN4 was identified in
Saccharomyces cerevisiae from mutations in a deficiency
in activation with the general amino acid control
pathway. GCN4 encodes a trans-activator of amino acid
biosynthetic genes containing 2 acidic activation
domains and a C-terminal bZIP domain, comprised of a
basic alpha-helical DNA-binding region and a coiled-coil
dimerization region.
Length = 54
Score = 54.2 bits (131), Expect = 2e-10
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221
R + +NREAA+ R +K E +K LE++V L ++N L DE+ LK+
Sbjct: 2 PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKALA 54
>gnl|CDD|145367 pfam02173, pKID, pKID domain. CBP and P300 bind to the pKID
(phosphorylated kinase-inducible-domain) domain of
CREB.
Length = 41
Score = 43.5 bits (103), Expect = 1e-06
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 55 KRRDITLTRRPSYRKILNDLRGAEIATGKVES 86
KRR+I L+RRPSYRKILNDL G + K
Sbjct: 11 KRREI-LSRRPSYRKILNDLSGEDTVGPKGAD 41
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 43.0 bits (102), Expect = 2e-06
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 217
+ R +N EAA+ R KKK+ + LE RV LE +N L +++ L+
Sbjct: 4 EYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLE 52
>gnl|CDD|148701 pfam07246, Phlebovirus_NSM, Phlebovirus nonstructural protein NS-M.
This family consists of several Phlebovirus
nonstructural NS-M proteins which represent the
N-terminal region of the M polyprotein precursor. The
function of this family is unknown.
Length = 264
Score = 29.5 bits (65), Expect = 1.2
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 137 NASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLE 196
NA TI + +++ + ++I E Q +K E++ L+N + R K ++
Sbjct: 149 NAEEKDATIQRKTKEMEEDSRNQIAHHEIQQKKNEIQKLRNDLKRGQEHRDAKLRVEESM 208
Query: 197 NRVAILENQNKALIDELKSLK 217
RV L+ + K L DEL+ K
Sbjct: 209 ARVKGLKEELKQLTDELQHAK 229
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.5 bits (67), Expect = 1.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 189 KEYIKCLENRVAILENQNKALIDELKSLKELY 220
E I+ ++ + +E + ++L++ELK L + Y
Sbjct: 214 SELIREIKEELEEIEKERESLLEELKELAKKY 245
>gnl|CDD|220963 pfam11067, DUF2868, Protein of unknown function (DUF2868). Some
members in this family of proteins with unknown function
are annotated as putative membrane proteins. However,
this cannot be confirmed.
Length = 318
Score = 29.3 bits (66), Expect = 1.6
Identities = 8/57 (14%), Positives = 22/57 (38%)
Query: 52 KRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTH 108
+R+ RR P Y+++ L + G V++ + + + + + +
Sbjct: 153 RRALRRLRLDLSLPYYQRLRQRLAPPSVDLGVVDADPAIAPAARASAARAGLAGLRN 209
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 29.0 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 157 PSEIGTGEDQSRKREMRLLKNREAAKECRR--KKKEYIKCLENRVAILENQNKALIDELK 214
PS+ GT E++ +RE +N E A E R + E +C + V I LI L+
Sbjct: 83 PSKKGTEEERRERRE----ENLEKALELLREGNRSEARECFQRAVDITPEMAHELIKALR 138
Query: 215 SLK 217
Sbjct: 139 KEG 141
>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor. Maf
transcription factors contain a conserved basic region
leucine zipper (bZIP) domain, which mediates their
dimerisation and DNA binding property. Thus, this family
is probably related to pfam00170.
Length = 93
Score = 27.8 bits (62), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
K+ R LKNR A+ CR K+ ++ R LE + L +++ LK+
Sbjct: 30 KQRRRTLKNRGYAQSCRSKR------VQQR-HELEKEKSQLQQQVEQLKQ 72
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 29.1 bits (65), Expect = 2.5
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 27/112 (24%)
Query: 37 DGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNL 96
DGASD + + + D K+ KI + + +G+ G D N
Sbjct: 90 DGASDFNYPSSNQDQKQ---------------KIAERMLSWRMNSGR----GEDVGAPNY 130
Query: 97 DSELSSHSLP--THYQTV---IPAG---HIHLSSQGGDHQTLPTITMTNASS 140
D E+S + +P T+ Q+V + A + ++S G + +P + N S
Sbjct: 131 DKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAGGKRIPYASDVNQSP 182
>gnl|CDD|131069 TIGR02014, BchZ, chlorophyllide reductase subunit Z. This model
represents the Z subunit of the three-subunit enzyme,
(bacterio)chlorophyllide reductase. This enzyme is
responsible for the reduction of the chlorin B-ring and
is closely related to the protochlorophyllide reductase
complex which reduces the D-ring. Both of these
complexes in turn are homologous to nitrogenase [Energy
metabolism, Photosynthesis].
Length = 468
Score = 28.8 bits (64), Expect = 2.7
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 104 SLPTHYQTVIPAG--HIHLSSQGGD------HQTL----PTITMTNASSA--GGTIVQYS 149
+LP H ++ G +SS G + + L P + +T + + GG +
Sbjct: 48 ALPPHELPIVVTGLGESEISSSGTEAIMQRAIEKLDPGKPAVVVTGSIAEMIGGGVTPKG 107
Query: 150 QDGQFFVPSEIGTGEDQSRKREMRLL 175
+ F+P I + Q R + L
Sbjct: 108 TSVRRFLPRTIDEDQWQGADRALAWL 133
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 28.1 bits (63), Expect = 4.1
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 172 MRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 219
M LK ++AAKE + ++E + E V++LE ALI ++K +++
Sbjct: 754 MVFLK-KDAAKELTQIQREKLAAWEPLVSVLE----ALILKIKKKRKV 796
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 28.1 bits (63), Expect = 4.6
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 149 SQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNK 207
+ F+ + + + +E +LK + K+ KE+ ILE +
Sbjct: 454 KDKNKPFIKLILLS----NNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDS 508
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 26.9 bits (60), Expect = 4.7
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 158 SEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 217
EI + ++ + L + E+ +E ++ ++ + LE R+ L QNK L D+++ L
Sbjct: 73 KEIAQLKAEAESAQAELSEAEESWEEQKKMLEDELSELEKRIEELNEQNKLLHDQIELLS 132
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 198 RVAILENQNKAL---IDELKSLKELY 220
RV LE ++ I+ELK++K LY
Sbjct: 151 RVEWLEGPHRPRKWTIEELKAIKALY 176
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 28.1 bits (64), Expect = 5.0
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 142 GGTIVQYSQD-GQFFVPSE--IG---------TGED--QSRKREMRLLKNREAAKECRRK 187
GGT V + D G F + SE + TGE + + LLK E A + K
Sbjct: 656 GGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLK--ELAALLKAK 713
Query: 188 KKEYIKCLENRVAILENQNKALIDELKSLKE 218
E L RV L + K L EL+ LK
Sbjct: 714 PSE----LPERVEALLEELKELEKELEQLKA 740
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.8 bits (63), Expect = 5.2
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 159 EIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
E + + K E K ++ K+ K E +V Q+K + LKE
Sbjct: 202 EDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKE 261
Query: 219 L 219
Sbjct: 262 E 262
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.7 bits (62), Expect = 5.8
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 16/67 (23%)
Query: 168 RKREMRLLKNREAAKECR---------------RKKKEYIKCLENRVAILENQNKALIDE 212
K+E L+K +E A++ + +K +EY K L+ ++ L+ + K+L E
Sbjct: 489 LKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK-LKEKLIKLKGEIKSLKKE 547
Query: 213 LKSLKEL 219
L+ L+EL
Sbjct: 548 LEKLEEL 554
>gnl|CDD|239227 cd02897, A2M_2, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). This group also contains the pregnancy zone
protein (PZP). Alpha(2)-M and PZP are broadly specific
proteinase inhibitors. Alpha (2)-M is a major carrier
protein in serum. The structural thioester of alpha
(2)-M, is involved in the immobilization and entrapment
of proteases. PZP is a trace protein in the plasma of
non-pregnant females and males which is elevated in
pregnancy. Alpha (2)-M and PZ bind to placental
protein-14 and may modulate its activity in T-cell
growth and cytokine production contributing to fetal
survival. It has been suggested that thioester bond
cleavage promotes the binding of PZ and alpha (2)-M to
the CD91 receptor clearing them from circulation.
Length = 292
Score = 27.5 bits (62), Expect = 5.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 23 LDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLT 62
L Q+ T+LSS Q +G + ++ ++ LT
Sbjct: 104 LQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALT 143
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 27.3 bits (61), Expect = 6.3
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 91 CDDSNLDSELSSHSLPTHY---QTVIPAGHIHLSSQGGDHQTLPTITMTNASSA 141
++ ++ S++ P V P G+I S GGD + + T+ ++
Sbjct: 171 VTENGTIADFSNYGGPVDGIKPDIVAPGGNILSSGPGGDLGGYDSHSGTSMAAP 224
>gnl|CDD|219510 pfam07678, A2M_comp, A-macroglobulin complement component. This
family includes the complement components region of the
alpha-2-macroglobulin family.
Length = 248
Score = 27.2 bits (61), Expect = 6.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 22 ELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLT 62
+ QS +L S+Q DG+ + ++K D+TLT
Sbjct: 50 HICQSLNWLLSQQKPDGSFREPGPVFHREMKGGVEDDVTLT 90
>gnl|CDD|222968 PHA03065, PHA03065, Hypothetical protein; Provisional.
Length = 438
Score = 27.3 bits (61), Expect = 8.2
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 219
K+ +R K R+A+K ++K+E I+ LE+ + L + + + +E+K+ EL
Sbjct: 81 KQSLRE-KRRKASKNTIKRKREEIEKLEDDIKNL-DVDDEMYEEIKTDLEL 129
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.129 0.358
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,993,301
Number of extensions: 985852
Number of successful extensions: 952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 71
Length of query: 226
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 133
Effective length of database: 6,812,680
Effective search space: 906086440
Effective search space used: 906086440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.8 bits)