RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1987
         (226 letters)



>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 28.8 bits (64), Expect = 0.59
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 171 EMRL--------LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220
           ++RL         K  +  KE   +  E ++ L +     +   + + +EL+ ++E +
Sbjct: 431 DLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSA----DRLMEVIREELELVREQF 484


>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 181 AKECRRKKKEYIKCLENRVAILENQNK 207
            K  RR     +K  +N   I++    
Sbjct: 77  RKPIRRPDGTRVKFEDNAAVIVDENED 103


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 26.0 bits (57), Expect = 1.5
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
           +K   YI  ++     L ++   L    + LK 
Sbjct: 48  KKATAYILSVQAEEQKLISEEDLLRKRREQLKH 80


>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 122

 Score = 26.2 bits (58), Expect = 1.9
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 179 EAAKECRRKKKEYIKCLENRVAILENQNK 207
              KE +R     I+  +N   I+ NQ +
Sbjct: 64  RTKKEIKRPDGSAIRFDDNAAVIINNQLE 92


>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
           {Synechococcus sp. strain PCC 7942 (Anacystis nidulans
           R2) [TaxId: 1140]}
          Length = 242

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 7/143 (4%)

Query: 48  DNDVKRSKRRDITLTRRPSYRKILNDLRGAE----IATGKVESSGSDCDDSNLDSELSSH 103
              V   K   +  +  P  ++++     +     I     +         ++ S    +
Sbjct: 82  AKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY 141

Query: 104 SLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTG 163
              +  +  +      L   G                A   + ++  D    +       
Sbjct: 142 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL---RNVL 198

Query: 164 EDQSRKREMRLLKNREAAKECRR 186
           E + R+R + +LK R  +     
Sbjct: 199 EGERRRRTLEILKLRGTSHMKGE 221


>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium
           janthinellum), penicillopepsin [TaxId: 5079]}
          Length = 323

 Score = 26.5 bits (57), Expect = 2.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 138 ASSAGGTIVQYSQDGQFFVPSEIGT 162
           A+S   T    + D ++  P  IG 
Sbjct: 1   AASGVATNTPTANDEEYITPVTIGG 25


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 24.3 bits (53), Expect = 4.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 190 EYIKCLENRVAILENQNKAL 209
           +YIK L+     L  +N  L
Sbjct: 33  DYIKYLQQVNHKLRQENMVL 52


>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase
           {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 251

 Score = 25.7 bits (56), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 188 KKEYIKCLENRVAI 201
           K+ Y  C EN+VA+
Sbjct: 1   KENYYYCGENKVAL 14


>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 95

 Score = 24.4 bits (53), Expect = 6.3
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 198 RVAILENQNKALIDELKSLKELYCQQE 224
           R   L N N+   D L  L E    +E
Sbjct: 10  RRTTLNNYNQLFTDALDILAENDELRE 36


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 25.3 bits (54), Expect = 7.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 195 LENRVAILENQNKALIDELKSLKELYCQQEME 226
           L  R   L   N+    EL++ KE   Q  ME
Sbjct: 1   LRQRTEELLRCNEQQAAELETCKEQLFQSNME 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 776,464
Number of extensions: 32996
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 16
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.1 bits)