BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1989
         (82 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
          Basis For Creb Faimly Selective Dimerization And Dna
          Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
          Basis For Creb Faimly Selective Dimerization And Dna
          Binding
          Length = 55

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 29/33 (87%)

Query: 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79
          Y+K LENRVA+LENQNK LI+ELK+LK+LY  +
Sbjct: 23 YVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55


>pdb|2OQQ|A Chain A, Crystal Structure Of Hy5 Leucine Zipper Homodimer From
          Arabidopsis Thaliana
 pdb|2OQQ|B Chain B, Crystal Structure Of Hy5 Leucine Zipper Homodimer From
          Arabidopsis Thaliana
          Length = 42

 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 47 YIKCLENRVAILENQNKALIDELKSLK 73
          Y+  LENRV  LEN+N  L + L +L+
Sbjct: 4  YLSELENRVKDLENKNSELEERLSTLQ 30


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,162,961
Number of Sequences: 62578
Number of extensions: 50191
Number of successful extensions: 85
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 5
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)