Query psy1989
Match_columns 82
No_of_seqs 101 out of 657
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:19:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584|consensus 99.8 1.1E-20 2.5E-25 142.2 6.6 69 12-80 278-346 (348)
2 PF00170 bZIP_1: bZIP transcri 99.6 3.9E-15 8.4E-20 88.9 7.9 62 21-82 1-62 (64)
3 smart00338 BRLZ basic region l 99.6 4.4E-15 9.5E-20 88.8 8.0 60 22-81 2-61 (65)
4 PF07716 bZIP_2: Basic region 99.3 9.3E-12 2E-16 72.3 7.3 50 25-75 5-54 (54)
5 KOG0709|consensus 99.3 1E-12 2.2E-17 103.7 2.5 67 8-74 234-300 (472)
6 KOG4343|consensus 99.2 3.9E-11 8.4E-16 96.6 7.9 66 15-80 271-336 (655)
7 KOG0837|consensus 99.1 3.6E-10 7.8E-15 84.3 6.4 71 11-81 192-262 (279)
8 KOG4005|consensus 99.0 1.7E-09 3.7E-14 80.4 8.5 56 24-79 68-123 (292)
9 KOG4571|consensus 98.5 1.3E-06 2.8E-11 66.1 9.4 56 26-81 228-283 (294)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.5 9.1E-10 2E-14 70.0 -6.5 60 19-78 24-83 (92)
11 KOG3119|consensus 98.3 3.1E-06 6.6E-11 62.9 7.5 62 20-81 189-250 (269)
12 KOG3863|consensus 97.9 1.7E-05 3.7E-10 64.9 5.1 55 26-80 491-545 (604)
13 KOG1414|consensus 97.4 2.6E-05 5.5E-10 60.6 -0.4 63 18-80 278-341 (395)
14 KOG4196|consensus 97.0 0.0065 1.4E-07 41.6 7.4 51 23-73 51-101 (135)
15 KOG1414|consensus 96.5 7.6E-05 1.6E-09 58.0 -5.3 66 15-80 144-213 (395)
16 PF06005 DUF904: Protein of un 93.7 0.27 5.9E-06 30.2 5.3 36 46-81 18-53 (72)
17 PF02183 HALZ: Homeobox associ 92.0 0.78 1.7E-05 25.8 5.1 30 51-80 10-39 (45)
18 PF12709 Kinetocho_Slk19: Cent 91.2 0.98 2.1E-05 28.9 5.6 35 44-78 40-74 (87)
19 PF05377 FlaC_arch: Flagella a 89.9 1.2 2.6E-05 26.3 4.7 30 48-77 2-38 (55)
20 PF01166 TSC22: TSC-22/dip/bun 89.2 0.94 2E-05 27.1 3.9 22 46-67 21-42 (59)
21 TIGR02449 conserved hypothetic 89.1 2.3 5E-05 25.8 5.7 34 47-80 8-41 (65)
22 PF02183 HALZ: Homeobox associ 88.3 2.5 5.4E-05 23.7 5.1 29 48-76 14-42 (45)
23 PF06156 DUF972: Protein of un 88.1 1.9 4.1E-05 28.2 5.2 34 47-80 23-56 (107)
24 TIGR02449 conserved hypothetic 88.0 1.9 4.2E-05 26.1 4.9 35 48-82 2-36 (65)
25 PF04728 LPP: Lipoprotein leuc 87.6 2.9 6.2E-05 24.7 5.3 36 47-82 4-39 (56)
26 PRK00888 ftsB cell division pr 87.4 2.3 5E-05 27.5 5.3 30 45-74 33-62 (105)
27 PF03980 Nnf1: Nnf1 ; InterPr 87.4 1.4 3E-05 28.1 4.2 32 43-74 77-108 (109)
28 PRK15422 septal ring assembly 87.3 2.4 5.1E-05 26.8 5.1 37 46-82 18-61 (79)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.0 3.8 8.1E-05 27.1 6.3 43 30-72 89-131 (132)
30 PRK13169 DNA replication intia 86.9 2.5 5.4E-05 27.9 5.3 33 47-79 23-55 (110)
31 KOG4196|consensus 86.6 1.4 3.1E-05 30.3 4.1 27 56-82 77-103 (135)
32 PRK10884 SH3 domain-containing 86.1 2.5 5.4E-05 30.5 5.4 36 46-81 125-160 (206)
33 PRK14127 cell division protein 84.7 4.4 9.6E-05 26.7 5.7 35 46-80 30-64 (109)
34 PF06005 DUF904: Protein of un 84.6 4.4 9.6E-05 24.8 5.3 28 48-75 27-54 (72)
35 PF07716 bZIP_2: Basic region 84.2 2.8 6.2E-05 23.7 4.1 29 54-82 26-54 (54)
36 PF08172 CASP_C: CASP C termin 84.2 4.8 0.0001 29.8 6.3 39 41-79 88-126 (248)
37 PF05103 DivIVA: DivIVA protei 83.5 0.74 1.6E-05 29.7 1.6 35 46-80 25-59 (131)
38 PF06156 DUF972: Protein of un 83.5 4.4 9.6E-05 26.5 5.2 35 47-81 9-43 (107)
39 PRK00888 ftsB cell division pr 82.5 4.2 9.2E-05 26.3 4.8 34 48-81 29-62 (105)
40 PF00170 bZIP_1: bZIP transcri 82.2 7 0.00015 22.6 5.3 31 46-76 33-63 (64)
41 PF04977 DivIC: Septum formati 82.2 5.6 0.00012 23.2 5.0 30 43-72 21-50 (80)
42 PF04977 DivIC: Septum formati 82.0 6.5 0.00014 22.9 5.2 32 48-79 19-50 (80)
43 PF05812 Herpes_BLRF2: Herpesv 81.6 3.9 8.4E-05 27.5 4.5 26 46-71 3-28 (118)
44 COG1382 GimC Prefoldin, chaper 81.6 6.9 0.00015 26.3 5.7 38 43-80 67-104 (119)
45 PHA03162 hypothetical protein; 81.4 2.9 6.2E-05 28.8 3.8 28 43-70 10-37 (135)
46 KOG3119|consensus 81.3 10 0.00022 28.2 7.1 67 13-79 185-255 (269)
47 PF13815 Dzip-like_N: Iguana/D 81.0 11 0.00024 24.5 6.5 37 46-82 80-116 (118)
48 PHA03155 hypothetical protein; 80.9 2.9 6.3E-05 28.1 3.7 24 47-70 9-32 (115)
49 PF05377 FlaC_arch: Flagella a 79.5 9.7 0.00021 22.4 5.2 30 48-77 16-45 (55)
50 PRK13169 DNA replication intia 79.3 7.7 0.00017 25.6 5.3 32 48-79 10-41 (110)
51 TIGR02894 DNA_bind_RsfA transc 79.3 16 0.00035 25.8 7.2 37 43-79 108-144 (161)
52 PF01166 TSC22: TSC-22/dip/bun 79.1 7.5 0.00016 23.2 4.7 31 46-76 14-44 (59)
53 KOG0709|consensus 77.8 3 6.5E-05 33.9 3.5 31 48-78 288-318 (472)
54 COG1382 GimC Prefoldin, chaper 77.7 10 0.00023 25.4 5.6 38 42-79 73-110 (119)
55 PF08232 Striatin: Striatin fa 76.8 20 0.00043 24.1 7.8 51 28-78 14-64 (134)
56 PF07334 IFP_35_N: Interferon- 76.3 6.5 0.00014 24.6 4.0 26 56-81 3-28 (76)
57 PF12711 Kinesin-relat_1: Kine 75.7 8.8 0.00019 24.4 4.6 31 46-76 31-67 (86)
58 PF01763 Herpes_UL6: Herpesvir 75.1 9.2 0.0002 31.7 5.7 36 46-81 370-405 (557)
59 TIGR02209 ftsL_broad cell divi 74.6 16 0.00034 21.8 6.2 31 44-74 29-59 (85)
60 PF08912 Rho_Binding: Rho Bind 74.2 10 0.00022 23.3 4.4 31 51-81 1-31 (69)
61 smart00338 BRLZ basic region l 73.7 15 0.00032 21.2 5.1 28 48-75 35-62 (65)
62 PF11559 ADIP: Afadin- and alp 73.2 21 0.00045 23.8 6.2 39 41-79 47-85 (151)
63 smart00340 HALZ homeobox assoc 73.1 12 0.00025 21.2 4.1 22 54-75 13-34 (44)
64 COG3074 Uncharacterized protei 73.0 15 0.00032 23.0 5.0 28 46-73 18-45 (79)
65 PF07407 Seadorna_VP6: Seadorn 73.0 5.4 0.00012 31.6 3.7 26 56-81 35-60 (420)
66 PF04949 Transcrip_act: Transc 72.8 28 0.00061 24.5 6.9 44 36-80 103-146 (159)
67 PRK10884 SH3 domain-containing 72.1 14 0.00031 26.6 5.5 30 48-77 134-163 (206)
68 PF09755 DUF2046: Uncharacteri 71.3 14 0.00031 28.5 5.6 43 30-72 24-67 (310)
69 PF12718 Tropomyosin_1: Tropom 71.1 14 0.00031 25.0 5.1 30 49-78 31-60 (143)
70 PF02403 Seryl_tRNA_N: Seryl-t 70.7 23 0.0005 22.1 5.8 51 29-79 49-100 (108)
71 PRK00295 hypothetical protein; 70.6 20 0.00044 21.4 5.6 19 47-65 6-24 (68)
72 KOG4797|consensus 70.6 8.2 0.00018 26.0 3.7 22 45-66 73-94 (123)
73 TIGR02894 DNA_bind_RsfA transc 69.8 13 0.00028 26.3 4.7 22 58-79 102-123 (161)
74 PF11471 Sugarporin_N: Maltopo 69.4 18 0.00039 21.4 4.6 32 50-81 29-60 (60)
75 PRK04325 hypothetical protein; 69.4 23 0.00049 21.5 5.6 20 46-65 9-28 (74)
76 PF12808 Mto2_bdg: Micro-tubul 69.3 14 0.00029 21.5 4.0 26 49-74 25-50 (52)
77 PRK04406 hypothetical protein; 69.2 24 0.00051 21.6 5.6 16 46-61 11-26 (75)
78 PRK02793 phi X174 lysis protei 69.1 23 0.00049 21.4 5.6 20 46-65 8-27 (72)
79 PF04880 NUDE_C: NUDE protein, 68.5 5.5 0.00012 28.1 2.7 19 64-82 28-46 (166)
80 PF04102 SlyX: SlyX; InterPro 67.7 23 0.00051 21.0 5.8 20 46-65 4-23 (69)
81 PRK11239 hypothetical protein; 67.6 14 0.0003 27.3 4.6 29 48-76 185-213 (215)
82 PF04728 LPP: Lipoprotein leuc 67.3 22 0.00047 21.0 4.6 28 48-75 12-39 (56)
83 PF07558 Shugoshin_N: Shugoshi 67.0 9.3 0.0002 21.3 2.9 24 46-69 21-44 (46)
84 KOG2483|consensus 66.7 23 0.0005 26.2 5.7 38 42-79 101-138 (232)
85 PRK00736 hypothetical protein; 66.4 25 0.00055 21.0 5.6 16 46-61 5-20 (68)
86 PF12709 Kinetocho_Slk19: Cent 66.2 26 0.00056 22.4 5.2 36 44-79 47-82 (87)
87 PRK02119 hypothetical protein; 65.9 27 0.00059 21.1 5.6 15 46-60 9-23 (73)
88 PF04849 HAP1_N: HAP1 N-termin 65.6 15 0.00033 28.3 4.8 34 46-79 160-193 (306)
89 COG2433 Uncharacterized conser 65.6 17 0.00037 30.7 5.3 25 52-76 428-452 (652)
90 PRK15422 septal ring assembly 65.3 30 0.00065 21.8 5.3 7 49-55 7-13 (79)
91 PF11382 DUF3186: Protein of u 64.9 17 0.00038 27.4 4.9 34 47-80 33-66 (308)
92 TIGR02338 gimC_beta prefoldin, 64.8 34 0.00073 21.8 5.7 32 48-79 76-107 (110)
93 PF11932 DUF3450: Protein of u 64.4 31 0.00067 24.9 6.0 36 45-80 55-90 (251)
94 PRK09343 prefoldin subunit bet 63.5 38 0.00083 22.2 5.8 33 48-80 80-112 (121)
95 PRK10803 tol-pal system protei 63.4 22 0.00047 26.2 5.1 35 47-81 55-89 (263)
96 PF04999 FtsL: Cell division p 63.1 17 0.00037 22.4 4.0 27 48-74 44-70 (97)
97 PF05266 DUF724: Protein of un 63.1 52 0.0011 23.4 7.0 29 30-58 94-122 (190)
98 COG3074 Uncharacterized protei 62.9 24 0.00052 22.0 4.4 8 59-66 52-59 (79)
99 KOG4797|consensus 62.1 23 0.00049 23.9 4.5 31 45-75 66-96 (123)
100 PF10473 CENP-F_leu_zip: Leuci 61.5 50 0.0011 22.6 7.5 50 30-79 36-85 (140)
101 PF14077 WD40_alt: Alternative 61.3 9 0.00019 22.0 2.1 22 46-67 18-39 (48)
102 COG4467 Regulator of replicati 60.8 32 0.0007 23.0 5.1 17 58-74 34-50 (114)
103 COG2919 Septum formation initi 60.7 33 0.00072 22.3 5.1 30 51-80 55-84 (117)
104 KOG4005|consensus 60.7 37 0.0008 25.9 5.9 58 18-75 65-126 (292)
105 PF08172 CASP_C: CASP C termin 60.4 27 0.00058 25.9 5.1 49 25-74 87-135 (248)
106 cd00632 Prefoldin_beta Prefold 59.1 43 0.00092 21.1 5.7 29 49-77 73-101 (105)
107 PF01920 Prefoldin_2: Prefoldi 58.9 39 0.00084 20.5 6.1 34 46-79 62-95 (106)
108 TIGR00219 mreC rod shape-deter 58.8 18 0.0004 27.0 4.1 23 55-77 68-90 (283)
109 PF08537 NBP1: Fungal Nap bind 58.4 87 0.0019 24.5 8.1 73 7-79 104-201 (323)
110 PRK13922 rod shape-determining 58.0 24 0.00052 25.6 4.5 22 56-77 72-93 (276)
111 TIGR02209 ftsL_broad cell divi 57.5 38 0.00083 20.1 5.7 33 48-80 26-58 (85)
112 TIGR03752 conj_TIGR03752 integ 57.2 27 0.0006 28.5 5.0 26 49-74 69-94 (472)
113 PF08826 DMPK_coil: DMPK coile 56.9 40 0.00086 20.0 8.2 37 44-80 23-59 (61)
114 PRK15396 murein lipoprotein; P 56.7 45 0.00097 20.8 4.9 34 47-80 26-59 (78)
115 PRK00846 hypothetical protein; 56.0 47 0.001 20.6 5.6 12 46-57 13-24 (77)
116 PF05529 Bap31: B-cell recepto 55.8 35 0.00077 23.5 4.9 29 51-79 159-187 (192)
117 PRK13922 rod shape-determining 55.7 46 0.00099 24.2 5.7 34 47-80 70-106 (276)
118 cd00890 Prefoldin Prefoldin is 55.6 50 0.0011 20.8 5.7 47 30-79 81-127 (129)
119 PRK02119 hypothetical protein; 55.6 44 0.00096 20.2 4.8 29 49-77 19-47 (73)
120 COG4467 Regulator of replicati 55.5 54 0.0012 22.0 5.4 32 48-79 10-41 (114)
121 PTZ00454 26S protease regulato 55.4 37 0.00081 26.5 5.4 35 46-80 29-63 (398)
122 PRK14127 cell division protein 55.2 37 0.0008 22.4 4.6 32 48-79 39-70 (109)
123 PF07047 OPA3: Optic atrophy 3 54.2 44 0.00095 22.3 5.0 25 49-73 108-132 (134)
124 PF09738 DUF2051: Double stran 54.0 33 0.00071 26.3 4.8 32 49-80 215-246 (302)
125 PF06785 UPF0242: Uncharacteri 53.9 25 0.00054 28.0 4.2 26 42-67 197-222 (401)
126 PF04111 APG6: Autophagy prote 53.9 33 0.0007 26.1 4.8 30 51-80 62-91 (314)
127 PRK04406 hypothetical protein; 53.7 49 0.0011 20.2 4.9 9 51-59 23-31 (75)
128 PF12718 Tropomyosin_1: Tropom 53.4 58 0.0013 22.0 5.5 34 46-79 14-47 (143)
129 PRK13923 putative spore coat p 53.4 59 0.0013 23.1 5.7 36 45-80 110-145 (170)
130 KOG1853|consensus 53.1 74 0.0016 24.6 6.5 48 33-80 32-79 (333)
131 KOG4343|consensus 52.7 20 0.00044 30.1 3.6 24 57-80 306-329 (655)
132 PF10224 DUF2205: Predicted co 52.5 55 0.0012 20.4 5.7 34 46-79 30-63 (80)
133 PRK14872 rod shape-determining 51.2 33 0.00072 26.7 4.5 26 54-79 58-83 (337)
134 PF06698 DUF1192: Protein of u 51.1 50 0.0011 19.5 4.5 27 48-74 23-49 (59)
135 cd07429 Cby_like Chibby, a nuc 50.5 70 0.0015 21.1 5.4 28 51-78 77-104 (108)
136 PF04880 NUDE_C: NUDE protein, 49.6 38 0.00083 23.9 4.2 21 56-76 27-47 (166)
137 PLN02320 seryl-tRNA synthetase 49.3 74 0.0016 26.1 6.3 50 29-78 113-162 (502)
138 PF09006 Surfac_D-trimer: Lung 48.9 49 0.0011 18.8 4.3 17 62-78 8-24 (46)
139 PF08961 DUF1875: Domain of un 48.7 5.8 0.00013 29.6 0.0 31 49-79 132-162 (243)
140 PF15058 Speriolin_N: Sperioli 48.6 36 0.00078 24.9 4.1 26 49-74 8-33 (200)
141 PF08317 Spc7: Spc7 kinetochor 47.9 1.2E+02 0.0026 22.9 8.1 54 26-79 209-263 (325)
142 cd00632 Prefoldin_beta Prefold 47.9 68 0.0015 20.1 5.5 39 43-81 60-98 (105)
143 PF11932 DUF3450: Protein of u 47.9 76 0.0017 22.8 5.7 31 50-80 53-83 (251)
144 PRK09413 IS2 repressor TnpA; R 47.8 50 0.0011 21.2 4.4 24 51-74 76-99 (121)
145 PF04899 MbeD_MobD: MbeD/MobD 47.7 63 0.0014 19.6 5.6 31 49-79 31-61 (70)
146 PF13815 Dzip-like_N: Iguana/D 46.7 65 0.0014 20.8 4.8 30 51-80 78-107 (118)
147 KOG3335|consensus 46.6 1E+02 0.0022 22.2 6.0 33 42-74 102-134 (181)
148 PRK03992 proteasome-activating 46.5 64 0.0014 24.8 5.4 32 48-79 17-48 (389)
149 PF04111 APG6: Autophagy prote 46.0 51 0.0011 25.0 4.8 32 48-79 45-76 (314)
150 TIGR01242 26Sp45 26S proteasom 45.8 42 0.00091 25.3 4.3 34 47-80 7-40 (364)
151 PHA02109 hypothetical protein 45.7 80 0.0017 23.1 5.5 36 44-79 191-226 (233)
152 COG3599 DivIVA Cell division i 45.6 80 0.0017 23.0 5.5 34 46-79 30-63 (212)
153 PRK03947 prefoldin subunit alp 45.6 84 0.0018 20.5 5.7 32 49-80 104-135 (140)
154 PF10146 zf-C4H2: Zinc finger- 45.3 62 0.0013 23.8 5.0 23 57-79 71-93 (230)
155 PRK04325 hypothetical protein; 44.9 70 0.0015 19.4 4.6 30 48-77 18-47 (74)
156 PF01763 Herpes_UL6: Herpesvir 44.5 1.5E+02 0.0032 24.8 7.4 36 46-81 363-398 (557)
157 PF05700 BCAS2: Breast carcino 44.5 66 0.0014 23.0 5.0 31 50-80 179-209 (221)
158 PF07989 Microtub_assoc: Micro 44.4 73 0.0016 19.4 5.8 22 57-78 47-68 (75)
159 PF06216 RTBV_P46: Rice tungro 44.4 71 0.0015 24.8 5.3 31 46-76 64-94 (389)
160 PF06785 UPF0242: Uncharacteri 44.2 53 0.0012 26.2 4.6 36 42-77 123-158 (401)
161 PTZ00454 26S protease regulato 44.1 1.5E+02 0.0033 23.1 7.5 36 47-82 23-58 (398)
162 PRK10803 tol-pal system protei 43.6 76 0.0016 23.4 5.2 31 45-75 60-90 (263)
163 TIGR00414 serS seryl-tRNA synt 43.6 1.2E+02 0.0026 23.9 6.6 50 29-78 50-101 (418)
164 PF07412 Geminin: Geminin; In 43.1 29 0.00062 25.3 2.9 27 51-77 130-156 (200)
165 PF10473 CENP-F_leu_zip: Leuci 42.5 93 0.002 21.3 5.2 28 51-78 71-98 (140)
166 PRK13729 conjugal transfer pil 42.3 63 0.0014 26.5 4.9 16 64-79 101-116 (475)
167 PHA00728 hypothetical protein 42.1 52 0.0011 22.7 3.9 25 53-77 5-29 (151)
168 PF15397 DUF4618: Domain of un 41.9 94 0.002 23.4 5.5 42 35-76 189-230 (258)
169 PF10205 KLRAQ: Predicted coil 41.9 99 0.0021 20.3 7.4 44 35-78 28-72 (102)
170 PRK09413 IS2 repressor TnpA; R 41.9 93 0.002 19.9 5.0 24 57-80 75-98 (121)
171 KOG0977|consensus 41.8 87 0.0019 26.1 5.7 38 39-76 35-79 (546)
172 PLN02678 seryl-tRNA synthetase 41.7 1.3E+02 0.0028 24.2 6.6 50 29-78 53-103 (448)
173 PF09304 Cortex-I_coil: Cortex 41.6 1E+02 0.0022 20.4 5.5 28 51-78 42-69 (107)
174 PF07412 Geminin: Geminin; In 41.1 48 0.001 24.1 3.8 24 47-70 133-156 (200)
175 KOG1962|consensus 41.0 71 0.0015 23.5 4.7 22 58-79 177-198 (216)
176 COG2433 Uncharacterized conser 40.7 75 0.0016 27.0 5.2 46 29-80 418-463 (652)
177 PF04999 FtsL: Cell division p 40.7 86 0.0019 19.2 5.4 31 50-80 39-69 (97)
178 PF14915 CCDC144C: CCDC144C pr 40.2 65 0.0014 25.0 4.5 30 48-77 216-245 (305)
179 PRK05431 seryl-tRNA synthetase 39.7 1.5E+02 0.0032 23.4 6.6 50 29-78 48-98 (425)
180 PF10224 DUF2205: Predicted co 38.6 98 0.0021 19.3 4.7 31 44-74 35-65 (80)
181 PF09726 Macoilin: Transmembra 38.4 1.4E+02 0.003 25.5 6.5 27 50-76 549-575 (697)
182 PF15556 Zwint: ZW10 interacto 38.0 1.7E+02 0.0037 21.9 8.1 50 30-79 118-167 (252)
183 PF13600 DUF4140: N-terminal d 37.9 98 0.0021 19.1 5.4 33 47-79 71-103 (104)
184 KOG1656|consensus 37.8 1.3E+02 0.0027 22.4 5.5 25 29-53 55-79 (221)
185 PRK11637 AmiB activator; Provi 37.7 1.2E+02 0.0026 23.5 5.8 8 48-55 77-84 (428)
186 COG4026 Uncharacterized protei 37.5 1.3E+02 0.0029 22.8 5.7 27 51-77 140-166 (290)
187 cd00890 Prefoldin Prefoldin is 37.4 1E+02 0.0023 19.3 5.4 34 47-80 88-121 (129)
188 PF06632 XRCC4: DNA double-str 37.3 1.3E+02 0.0027 23.5 5.8 30 49-78 140-169 (342)
189 PF13118 DUF3972: Protein of u 37.2 1E+02 0.0022 21.0 4.6 25 53-77 85-109 (126)
190 PF14645 Chibby: Chibby family 36.9 1.2E+02 0.0027 19.9 5.1 29 49-77 74-102 (116)
191 cd00584 Prefoldin_alpha Prefol 36.9 1.1E+02 0.0025 19.5 5.7 45 32-79 83-127 (129)
192 TIGR01242 26Sp45 26S proteasom 36.8 1.5E+02 0.0032 22.3 6.0 33 49-81 2-34 (364)
193 cd07624 BAR_SNX7_30 The Bin/Am 36.4 1.3E+02 0.0029 21.0 5.4 34 44-77 19-52 (200)
194 PRK09973 putative outer membra 36.4 1.1E+02 0.0025 19.3 4.9 33 47-79 25-57 (85)
195 PF02996 Prefoldin: Prefoldin 35.7 1.1E+02 0.0024 19.0 5.2 32 48-79 86-117 (120)
196 PF09738 DUF2051: Double stran 35.5 1E+02 0.0022 23.6 5.0 34 45-78 83-123 (302)
197 PF09726 Macoilin: Transmembra 35.4 1.7E+02 0.0036 25.0 6.6 33 48-80 540-572 (697)
198 PF05812 Herpes_BLRF2: Herpesv 35.4 88 0.0019 21.0 4.1 25 54-78 4-28 (118)
199 COG4839 FtsL Protein required 35.4 69 0.0015 21.7 3.6 25 48-72 69-93 (120)
200 PF10883 DUF2681: Protein of u 35.0 1.2E+02 0.0026 19.2 5.5 23 55-77 32-54 (87)
201 PF14775 NYD-SP28_assoc: Sperm 34.9 96 0.0021 18.1 5.4 32 46-78 27-58 (60)
202 KOG1318|consensus 34.8 98 0.0021 24.9 4.9 28 50-77 294-321 (411)
203 TIGR02680 conserved hypothetic 34.3 1.7E+02 0.0038 26.5 6.8 40 42-81 738-777 (1353)
204 PF15205 PLAC9: Placenta-speci 34.1 1.1E+02 0.0024 19.0 4.0 24 50-73 33-56 (74)
205 PF09766 FimP: Fms-interacting 34.1 1.9E+02 0.0042 22.2 6.3 51 30-80 91-142 (355)
206 PRK14154 heat shock protein Gr 34.1 1.3E+02 0.0029 21.8 5.2 12 58-69 64-75 (208)
207 PF05529 Bap31: B-cell recepto 33.9 1.6E+02 0.0034 20.3 6.7 32 45-76 160-191 (192)
208 PRK14160 heat shock protein Gr 33.8 1.2E+02 0.0027 22.0 5.0 22 53-74 68-89 (211)
209 PRK05771 V-type ATP synthase s 33.6 1.3E+02 0.0028 24.8 5.5 34 46-79 93-126 (646)
210 TIGR02338 gimC_beta prefoldin, 33.2 1.3E+02 0.0028 19.1 5.9 37 44-80 65-101 (110)
211 PF05911 DUF869: Plant protein 33.1 1.7E+02 0.0037 25.3 6.3 39 42-80 130-168 (769)
212 PHA03155 hypothetical protein; 33.0 86 0.0019 21.0 3.7 25 54-78 9-33 (115)
213 cd07622 BAR_SNX4 The Bin/Amphi 33.0 1.7E+02 0.0036 20.8 5.5 35 44-78 19-53 (201)
214 PF03980 Nnf1: Nnf1 ; InterPr 32.8 1.3E+02 0.0028 18.9 5.3 35 48-82 75-109 (109)
215 PF01920 Prefoldin_2: Prefoldi 32.2 1.2E+02 0.0026 18.3 5.2 34 46-79 69-102 (106)
216 PF07047 OPA3: Optic atrophy 3 32.2 1.4E+02 0.003 19.9 4.7 22 45-66 111-132 (134)
217 PF05308 Mito_fiss_reg: Mitoch 32.1 65 0.0014 24.0 3.4 19 54-72 123-141 (253)
218 PF15188 CCDC-167: Coiled-coil 32.1 1.3E+02 0.0027 19.1 4.2 26 57-82 40-65 (85)
219 KOG0977|consensus 32.0 1.3E+02 0.0028 25.1 5.3 25 50-74 166-190 (546)
220 PF05557 MAD: Mitotic checkpoi 31.7 1.5E+02 0.0033 24.7 5.8 33 46-78 503-535 (722)
221 PF14662 CCDC155: Coiled-coil 31.6 2E+02 0.0044 20.8 7.1 31 49-79 98-128 (193)
222 TIGR01834 PHA_synth_III_E poly 31.5 73 0.0016 24.7 3.6 29 47-75 290-318 (320)
223 PRK11239 hypothetical protein; 31.2 90 0.0019 23.1 3.9 26 55-80 185-210 (215)
224 PF15070 GOLGA2L5: Putative go 30.7 1.2E+02 0.0026 25.4 5.0 36 47-82 415-450 (617)
225 COG3132 Uncharacterized protei 30.5 90 0.0019 22.9 3.7 24 49-72 188-211 (215)
226 TIGR03689 pup_AAA proteasome A 30.4 1.2E+02 0.0027 24.8 4.9 29 51-79 13-41 (512)
227 PF08317 Spc7: Spc7 kinetochor 30.4 1.7E+02 0.0037 22.0 5.4 29 47-75 210-238 (325)
228 PF14197 Cep57_CLD_2: Centroso 30.3 1.3E+02 0.0028 18.1 4.6 13 63-75 50-62 (69)
229 PF12325 TMF_TATA_bd: TATA ele 30.3 1.7E+02 0.0036 19.4 5.2 14 62-75 70-83 (120)
230 KOG0483|consensus 30.2 95 0.0021 22.4 3.8 21 57-77 123-143 (198)
231 COG4372 Uncharacterized protei 30.1 3.1E+02 0.0068 22.5 7.7 46 30-75 128-173 (499)
232 PF08286 Spc24: Spc24 subunit 29.9 17 0.00038 23.5 0.0 28 48-75 15-42 (118)
233 PF08606 Prp19: Prp19/Pso4-lik 29.5 1.4E+02 0.003 18.3 5.2 32 47-78 9-40 (70)
234 PRK00295 hypothetical protein; 29.4 1.3E+02 0.0028 17.9 5.7 31 48-78 14-44 (68)
235 PF04340 DUF484: Protein of un 29.4 1.2E+02 0.0027 21.3 4.3 26 48-73 42-67 (225)
236 COG1792 MreC Cell shape-determ 29.1 1.2E+02 0.0027 22.6 4.5 22 48-69 85-106 (284)
237 PRK14162 heat shock protein Gr 29.1 2E+02 0.0043 20.7 5.3 27 51-77 44-70 (194)
238 PRK01203 prefoldin subunit alp 29.0 1.9E+02 0.0041 19.6 5.1 28 50-77 4-31 (130)
239 PF01486 K-box: K-box region; 28.9 1.5E+02 0.0032 18.4 5.2 42 29-70 53-99 (100)
240 COG5509 Uncharacterized small 28.8 1.4E+02 0.003 18.1 3.9 22 48-69 27-48 (65)
241 PHA03162 hypothetical protein; 28.7 1.2E+02 0.0025 21.0 3.8 23 55-77 15-37 (135)
242 PF06305 DUF1049: Protein of u 28.5 1.2E+02 0.0025 17.2 3.4 17 61-77 49-65 (68)
243 PF07407 Seadorna_VP6: Seadorn 28.3 1.1E+02 0.0024 24.4 4.2 29 49-77 35-63 (420)
244 PF10482 CtIP_N: Tumour-suppre 28.3 90 0.0019 21.1 3.2 20 57-76 100-119 (120)
245 PF10205 KLRAQ: Predicted coil 28.2 1.8E+02 0.0038 19.1 5.4 31 51-81 38-68 (102)
246 KOG3156|consensus 28.2 2.4E+02 0.0051 21.0 5.6 22 55-76 118-139 (220)
247 PF13971 Mei4: Meiosis-specifi 28.1 1.2E+02 0.0026 24.1 4.3 37 43-82 38-74 (375)
248 PF09325 Vps5: Vps5 C terminal 27.8 2.1E+02 0.0045 19.7 6.2 36 43-78 28-63 (236)
249 TIGR00293 prefoldin, archaeal 27.7 1.7E+02 0.0036 18.6 5.8 27 50-76 97-123 (126)
250 PF08614 ATG16: Autophagy prot 27.6 2.1E+02 0.0046 19.8 8.2 36 42-77 126-161 (194)
251 PF02050 FliJ: Flagellar FliJ 27.6 1.4E+02 0.0031 17.7 5.3 34 45-78 51-84 (123)
252 COG3883 Uncharacterized protei 27.4 1.6E+02 0.0035 22.3 4.8 30 50-79 63-92 (265)
253 PF13863 DUF4200: Domain of un 27.3 1.7E+02 0.0036 18.5 7.1 35 37-71 72-106 (126)
254 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.3 1.8E+02 0.004 18.9 4.7 28 50-77 102-129 (132)
255 PF00261 Tropomyosin: Tropomyo 27.2 2E+02 0.0043 20.6 5.1 14 58-71 202-215 (237)
256 COG3883 Uncharacterized protei 27.2 1.9E+02 0.0042 21.9 5.2 21 57-77 63-83 (265)
257 PF04102 SlyX: SlyX; InterPro 27.1 1.4E+02 0.0031 17.6 5.8 29 50-78 15-43 (69)
258 PRK14140 heat shock protein Gr 26.8 2.4E+02 0.0052 20.2 5.5 32 47-78 38-69 (191)
259 PRK03947 prefoldin subunit alp 26.8 1.9E+02 0.004 18.8 5.7 29 49-77 97-125 (140)
260 PF05008 V-SNARE: Vesicle tran 26.6 1.2E+02 0.0025 17.8 3.3 35 47-81 40-75 (79)
261 KOG4643|consensus 26.5 1.8E+02 0.0038 26.6 5.4 32 43-74 527-558 (1195)
262 PF11853 DUF3373: Protein of u 26.5 68 0.0015 26.3 2.8 21 54-74 32-52 (489)
263 KOG0483|consensus 26.5 1.4E+02 0.0031 21.5 4.2 34 48-81 107-140 (198)
264 PRK02793 phi X174 lysis protei 26.1 1.5E+02 0.0034 17.7 5.7 31 48-78 17-47 (72)
265 PF02994 Transposase_22: L1 tr 26.0 2.6E+02 0.0056 21.7 5.8 29 47-75 145-173 (370)
266 PF14662 CCDC155: Coiled-coil 25.9 2.5E+02 0.0054 20.4 5.4 20 57-76 92-111 (193)
267 KOG2483|consensus 25.9 2.5E+02 0.0055 20.7 5.5 38 37-74 103-140 (232)
268 KOG0982|consensus 25.8 3.8E+02 0.0083 22.1 7.4 34 47-80 298-331 (502)
269 KOG4301|consensus 25.8 1.4E+02 0.0031 24.0 4.3 29 46-74 404-432 (434)
270 PF03955 Adeno_PIX: Adenovirus 25.4 48 0.001 22.0 1.5 32 47-78 77-108 (109)
271 PRK14011 prefoldin subunit alp 25.3 2.3E+02 0.0049 19.3 5.0 22 29-50 81-102 (144)
272 PF14915 CCDC144C: CCDC144C pr 25.3 2E+02 0.0044 22.3 5.0 26 57-82 275-300 (305)
273 PRK14151 heat shock protein Gr 25.1 2.2E+02 0.0047 20.0 4.9 25 51-75 25-49 (176)
274 PF15294 Leu_zip: Leucine zipp 24.9 1.8E+02 0.0039 22.2 4.6 33 42-74 142-174 (278)
275 PF06424 PRP1_N: PRP1 splicing 24.8 79 0.0017 21.5 2.5 40 41-80 78-117 (133)
276 cd07623 BAR_SNX1_2 The Bin/Amp 24.6 2.2E+02 0.0048 20.2 4.9 30 43-72 16-45 (224)
277 PRK14139 heat shock protein Gr 24.5 2.6E+02 0.0057 19.8 5.3 28 49-76 35-62 (185)
278 PF09744 Jnk-SapK_ap_N: JNK_SA 24.4 2.5E+02 0.0054 19.5 7.5 23 57-79 86-108 (158)
279 PF06216 RTBV_P46: Rice tungro 24.4 2.1E+02 0.0045 22.3 4.9 33 48-80 80-112 (389)
280 COG1730 GIM5 Predicted prefold 24.4 2.4E+02 0.0052 19.3 5.4 26 53-78 108-133 (145)
281 cd07665 BAR_SNX1 The Bin/Amphi 24.2 2.2E+02 0.0047 20.9 4.9 28 42-69 25-52 (234)
282 PHA03385 IX capsid protein IX, 24.2 2.2E+02 0.0048 19.5 4.5 25 52-76 106-130 (135)
283 PF15035 Rootletin: Ciliary ro 24.1 2.3E+02 0.0049 20.0 4.8 29 51-79 86-114 (182)
284 PF14282 FlxA: FlxA-like prote 24.0 2E+02 0.0044 18.3 5.0 17 63-79 54-70 (106)
285 PRK00736 hypothetical protein; 24.0 1.7E+02 0.0036 17.4 5.7 32 48-79 14-45 (68)
286 PF15619 Lebercilin: Ciliary p 23.9 2.7E+02 0.0058 19.8 5.2 30 46-75 12-41 (194)
287 PF05278 PEARLI-4: Arabidopsis 23.8 3.3E+02 0.0072 20.7 7.6 38 45-82 206-243 (269)
288 PF09486 HrpB7: Bacterial type 23.3 2.7E+02 0.0058 19.4 5.8 35 45-79 78-112 (158)
289 PRK14148 heat shock protein Gr 23.1 2.9E+02 0.0063 19.8 5.3 25 51-75 45-69 (195)
290 PF07544 Med9: RNA polymerase 23.0 1.9E+02 0.0041 17.6 4.6 26 55-80 54-79 (83)
291 PF10481 CENP-F_N: Cenp-F N-te 23.0 2.8E+02 0.006 21.6 5.3 32 43-74 50-81 (307)
292 PF12443 AKNA: AT-hook-contain 22.9 1.8E+02 0.004 19.1 3.9 25 56-80 48-72 (106)
293 PF13591 MerR_2: MerR HTH fami 22.7 1.1E+02 0.0023 18.6 2.6 17 64-80 67-83 (84)
294 PF05565 Sipho_Gp157: Siphovir 22.7 2.6E+02 0.0056 19.0 5.3 34 47-80 48-81 (162)
295 COG4026 Uncharacterized protei 22.6 3.2E+02 0.0069 20.8 5.5 14 57-70 174-187 (290)
296 cd07664 BAR_SNX2 The Bin/Amphi 22.5 2.5E+02 0.0054 20.5 4.9 27 42-68 25-51 (234)
297 PHA02047 phage lambda Rz1-like 22.5 2.4E+02 0.0051 18.5 5.4 28 52-79 33-60 (101)
298 PF07200 Mod_r: Modifier of ru 22.4 2E+02 0.0043 18.9 4.1 6 32-37 42-47 (150)
299 KOG1760|consensus 22.4 2.7E+02 0.0058 19.1 5.2 25 56-80 91-115 (131)
300 PF11336 DUF3138: Protein of u 22.3 1.5E+02 0.0033 24.4 4.0 23 55-77 27-49 (514)
301 PHA02562 46 endonuclease subun 22.3 2.9E+02 0.0064 21.7 5.6 35 42-76 170-204 (562)
302 PF11336 DUF3138: Protein of u 22.2 1.2E+02 0.0025 25.1 3.3 21 60-80 25-45 (514)
303 PF15035 Rootletin: Ciliary ro 22.1 2.2E+02 0.0048 20.0 4.4 28 53-80 74-101 (182)
304 PTZ00361 26 proteosome regulat 22.0 3.9E+02 0.0085 21.3 6.3 43 38-80 54-101 (438)
305 PF13870 DUF4201: Domain of un 21.7 2.7E+02 0.0058 18.9 5.4 31 49-79 87-117 (177)
306 PRK11637 AmiB activator; Provi 21.7 3.9E+02 0.0084 20.7 7.7 31 46-76 68-98 (428)
307 cd07628 BAR_Atg24p The Bin/Amp 21.3 2.9E+02 0.0063 19.1 5.4 33 45-77 10-42 (185)
308 PF15058 Speriolin_N: Sperioli 21.2 1.5E+02 0.0032 21.8 3.4 27 54-80 6-32 (200)
309 PF10669 Phage_Gp23: Protein g 21.1 2.6E+02 0.0057 18.5 5.2 49 21-73 51-99 (121)
310 PF13851 GAS: Growth-arrest sp 20.9 3.1E+02 0.0068 19.4 8.1 34 45-78 92-125 (201)
311 PF10805 DUF2730: Protein of u 20.7 2.4E+02 0.0052 17.9 5.4 14 45-58 48-61 (106)
312 PF06810 Phage_GP20: Phage min 20.6 2.9E+02 0.0063 18.8 6.3 37 42-78 30-69 (155)
313 PF05769 DUF837: Protein of un 20.4 1.9E+02 0.004 20.4 3.8 18 52-69 159-176 (181)
314 PF11500 Cut12: Spindle pole b 20.3 3.1E+02 0.0068 19.1 7.8 53 26-78 85-137 (152)
315 PF08961 DUF1875: Domain of un 20.2 34 0.00074 25.6 0.0 41 42-82 118-158 (243)
316 PF02994 Transposase_22: L1 tr 20.2 3.8E+02 0.0083 20.7 5.8 31 46-76 151-181 (370)
317 PRK09039 hypothetical protein; 20.2 4.1E+02 0.0088 20.4 6.8 28 49-76 154-181 (343)
318 KOG2991|consensus 20.1 2.1E+02 0.0046 22.2 4.2 12 46-57 264-275 (330)
319 KOG1319|consensus 20.1 3.7E+02 0.008 19.9 9.2 25 57-81 116-140 (229)
No 1
>KOG3584|consensus
Probab=99.82 E-value=1.1e-20 Score=142.23 Aligned_cols=69 Identities=61% Similarity=0.866 Sum_probs=65.3
Q ss_pred cCcCCCCCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 12 WLRIQVGPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 12 ~~~~~~~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-.+|....||..+||+.|++|||+||+.||+||||||+|||.+|+.||++|+.|+.+++.|+++||+-+
T Consensus 278 ltsp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~k~ 346 (348)
T KOG3584|consen 278 LTSPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCHKS 346 (348)
T ss_pred ccCCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhccc
Confidence 345788899999999999999999999999999999999999999999999999999999999999854
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.61 E-value=3.9e-15 Score=88.89 Aligned_cols=62 Identities=34% Similarity=0.383 Sum_probs=55.7
Q ss_pred CCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 21 DSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 21 e~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
|+..++.+++++||+||+.||.||+.|+.+||..|..|+.+|..|..++..|..++..|+.+
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34578889999999999999999999999999999999999999999999999999998753
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.61 E-value=4.4e-15 Score=88.78 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=56.6
Q ss_pred CccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 22 SLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 22 ~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.++++.+|+.+||+||++||.||+.|+..||.++..|+.+|..|..++..|..++..|++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999876
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.33 E-value=9.3e-12 Score=72.34 Aligned_cols=50 Identities=32% Similarity=0.322 Sum_probs=45.2
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
.+.+|. +||+||++||.||+.++..|+..+..|+.+|..|..++..|+.+
T Consensus 5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556 99999999999999999999999999999999999999988764
No 5
>KOG0709|consensus
Probab=99.30 E-value=1e-12 Score=103.70 Aligned_cols=67 Identities=28% Similarity=0.275 Sum_probs=54.4
Q ss_pred cCCCcCcCCCCCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 8 NCSSWLRIQVGPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 8 ~~ss~~~~~~~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.|-+..-|....||+..|+.||++||+.+|+.+|+|||+||++||.+|.....+|++|..++..|..
T Consensus 234 ~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 234 YSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred CcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh
Confidence 4455667888999999999999999999999999999999999999997655555555555555543
No 6
>KOG4343|consensus
Probab=99.22 E-value=3.9e-11 Score=96.60 Aligned_cols=66 Identities=30% Similarity=0.268 Sum_probs=61.3
Q ss_pred CCCCCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 15 IQVGPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 15 ~~~~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|.++.|++..+++.|++|||++|..||+|||||+..||.++..|..||..|+.+...|+.++..+-
T Consensus 271 p~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 271 PNVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred CCCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 557789999999999999999999999999999999999999999999999999999999887764
No 7
>KOG0837|consensus
Probab=99.06 E-value=3.6e-10 Score=84.33 Aligned_cols=71 Identities=27% Similarity=0.265 Sum_probs=63.0
Q ss_pred CcCcCCCCCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 11 SWLRIQVGPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 11 s~~~~~~~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.+.+|.+..+..-.|-+|...|||+||.+||.||-++|..||++|..|..+|..|-..+..|+..|.++||
T Consensus 192 ~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 192 EPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred CCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34456666666666778889999999999999999999999999999999999999999999999999986
No 8
>KOG4005|consensus
Probab=99.02 E-value=1.7e-09 Score=80.42 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=49.5
Q ss_pred cchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 24 PKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 24 ~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.|-.||++|||+||+.+|.|||+++.++|..+..|+.+|..|..+.+.|+.....|
T Consensus 68 EK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 68 EKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999998888765544
No 9
>KOG4571|consensus
Probab=98.49 E-value=1.3e-06 Score=66.09 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=52.2
Q ss_pred hhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 26 ISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 26 r~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..|..+.|++||.+.|+||+.-.+.|+.+...|+..|..|+.+++.|..+|.-|||
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558899999999999999999999999999999999999999999999998886
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.49 E-value=9.1e-10 Score=70.01 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=45.7
Q ss_pred CCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 19 PEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 19 ~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
++....|..||..|||.||+.||.||.+.+..||..+..|..+...|..++..+..++..
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~ 83 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDE 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788999999999999999999999999999987666555555555555544433
No 11
>KOG3119|consensus
Probab=98.31 E-value=3.1e-06 Score=62.90 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 20 EDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 20 ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|.++.+...|+.||-+||++||.+.|....++..++..|+.||..|+.+|.+|+.++..++.
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555667789999999999999999999999999999999999999999999999988764
No 12
>KOG3863|consensus
Probab=97.92 E-value=1.7e-05 Score=64.90 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=45.3
Q ss_pred hhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 26 ISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 26 r~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-.||+=|||+||+.||+||-+-|..||..|..|..+...|..+-..+...+-.++
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~k 545 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMK 545 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999888888877776666555544443
No 13
>KOG1414|consensus
Probab=97.44 E-value=2.6e-05 Score=60.56 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=54.7
Q ss_pred CCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q psy1989 18 GPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALI-DELKSLKELYCQQE 80 (82)
Q Consensus 18 ~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~-~q~~~L~~~~~~lk 80 (82)
..++.+.++.+.+++||+||.+||.|||.|+..|+.....+..+|..|. .++..|...|.++.
T Consensus 278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLS 341 (395)
T ss_pred cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhc
Confidence 3445555557779999999999999999999999999999999999999 88888888887764
No 14
>KOG4196|consensus
Probab=96.95 E-value=0.0065 Score=41.65 Aligned_cols=51 Identities=25% Similarity=0.164 Sum_probs=32.6
Q ss_pred ccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 23 LPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 23 ~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
.+|..||-+|||=-|+-||-|.-.--.+||.+-..|..+...|+.++..+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999998876655555544444333333333333333
No 15
>KOG1414|consensus
Probab=96.47 E-value=7.6e-05 Score=57.96 Aligned_cols=66 Identities=23% Similarity=0.193 Sum_probs=57.7
Q ss_pred CCCCCCCCccchhchhHHhHHHHHH---HHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy1989 15 IQVGPEDSLPKISVPGSVWMEAAKE---CRRKKKEYIKCLENRVAILE-NQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 15 ~~~~~ee~~~kr~rR~~kNR~aA~~---sR~RKKe~i~~LE~~v~~Le-~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.....+...++..|+++|++||.+ ||.+++.+...|+.+|+.|+ ..|..|..++..|+++...+.
T Consensus 144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~ 213 (395)
T KOG1414|consen 144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE 213 (395)
T ss_pred CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence 3445566667888999999999999 99999999999999999999 999999999999988887764
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.74 E-value=0.27 Score=30.18 Aligned_cols=36 Identities=31% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+-|.-|..+++.|..+|..|..+...|+.+..+|++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777777777665
No 17
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.96 E-value=0.78 Score=25.76 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|-..+..|..+|..|..+.+.|+++|..|+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666655543
No 18
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=91.24 E-value=0.98 Score=28.92 Aligned_cols=35 Identities=43% Similarity=0.431 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
||.|-...+.++..|+.+|..|..++..|+..+..
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888888888888887654
No 19
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.87 E-value=1.2 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=15.3
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAI-------LENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~-------Le~eN~~L~~q~~~L~~~~~ 77 (82)
+.+||.++.. ++.+|..|...+..+..-|.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 45555555555555544443
No 20
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.21 E-value=0.94 Score=27.14 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALID 67 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~ 67 (82)
+.|.+|+.+...|+.||.-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555543
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=89.09 E-value=2.3 Score=25.78 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|+.|=..+..|..+|..|+.++..+..+-.+|+
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556788888888888888877776664
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.25 E-value=2.5 Score=23.68 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
-+.|...+..|..+|..|+.++..|+..+
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37788888888888888888888887654
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.11 E-value=1.9 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-+..|...+..|..||..|+-++..|+..+..+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677788888888888888888877654
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=88.04 E-value=1.9 Score=26.10 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+..|+.+|..|=.....|..++..|+.++.++..|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778877777777888888887777776543
No 25
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.55 E-value=2.9 Score=24.75 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
.|+.|...|..|...-..|...+..|+..+...+.|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777666543
No 26
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.39 E-value=2.3 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+..+..++.+...|+.+|..|..++..|+.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555666666666666666666666654
No 27
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=87.38 E-value=1.4 Score=28.15 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
-++..+..|...+..++.+|..|..+|..++.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34678899999999999999999999988764
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.34 E-value=2.4 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhC
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKS-------LKELYCQQEME 82 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~-------L~~~~~~lk~~ 82 (82)
+-|.-|.-+++.|..+|..|..++.. |..+..+|++|
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555556666777777777777665 66666666654
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.95 E-value=3.8 Score=27.15 Aligned_cols=43 Identities=30% Similarity=0.287 Sum_probs=31.4
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
+..+..++..-+..=..-+..++.++..|..+|.-|+.||..+
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555556667788888889999999999988764
No 30
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.92 E-value=2.5 Score=27.95 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-+..|...+..|..||..|.-++..|+..+..+
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666667778888888888888888877765
No 31
>KOG4196|consensus
Probab=86.62 E-value=1.4 Score=30.28 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 56 AILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
..||.+|..|.+||..|..++..+.+|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998775
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.08 E-value=2.5 Score=30.51 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+.+...+..+..|+.+|..|..++..+++++..+..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666888888888888888887766543
No 33
>PRK14127 cell division protein GpsB; Provisional
Probab=84.73 E-value=4.4 Score=26.74 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+|++.+-..++.|..+|..|..++..|+..+..+.
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777777777777776654
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.60 E-value=4.4 Score=24.77 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+..|..+...|..+|..|..++..|+.+
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 35
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=84.24 E-value=2.8 Score=23.67 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
.+..|+.+...|..++..|..++..|.+|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34678999999999999999999998865
No 36
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=84.17 E-value=4.8 Score=29.83 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 41 RRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 41 R~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|.|=+..+.+||.++..+..+...|+.+++.|+.--..|
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445568888888888888888888888887754443
No 37
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=83.51 E-value=0.74 Score=29.67 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|+..|...+..|..+|..|..++..|+..+..+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 68899999999999999999999988887766653
No 38
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.48 E-value=4.4 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.+..||.++..|-.+-..|+.++..|-++-..|++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555444
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.48 E-value=4.2 Score=26.29 Aligned_cols=34 Identities=15% Similarity=-0.002 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
...+..++..++.+|..|..+...|+.++..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5678888999999999999999999999988863
No 40
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=82.25 E-value=7 Score=22.58 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..+..|+.....|..++..|..++..|..++
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777777777777777777777654
No 41
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.25 E-value=5.6 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
..+..+..|+.+++.+..+|..|..+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677777777777777777777776
No 42
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.97 E-value=6.5 Score=22.93 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+..++..|+.++..|..++..|+.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888899999999999999999998887
No 43
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=81.59 E-value=3.9 Score=27.54 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKS 71 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~ 71 (82)
.-+++|..++..|+.||+.|+.++..
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35788999999999999999988753
No 44
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=81.57 E-value=6.9 Score=26.30 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|.+-+.+|+.+.+.|+..-..|..+-..++.++..|+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554443
No 45
>PHA03162 hypothetical protein; Provisional
Probab=81.40 E-value=2.9 Score=28.78 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELK 70 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~ 70 (82)
++..-+++|..++..|+.||+.|+.++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999883
No 46
>KOG3119|consensus
Probab=81.31 E-value=10 Score=28.21 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=52.2
Q ss_pred CcCCCCCCCCccchhch----hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 13 LRIQVGPEDSLPKISVP----GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 13 ~~~~~~~ee~~~kr~rR----~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..+....++..+.|.+| ..|-|.+++.--..-...+..|+.+-+.|..+...|+.++..|+..+.++
T Consensus 185 ~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 185 SSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred CCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556565655655554 66777777776677888899999999999999999999999999887653
No 47
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=80.97 E-value=11 Score=24.48 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
..+..|+.++..+..++..|...+..+.+++..++.|
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777788888888888888888888888765
No 48
>PHA03155 hypothetical protein; Provisional
Probab=80.89 E-value=2.9 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELK 70 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~ 70 (82)
-+++|+.++..|+-||+.|+.++.
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999998874
No 49
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.52 E-value=9.7 Score=22.40 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+..+..+.+.+......+.+.+..|-..|.
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666655543
No 50
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.34 E-value=7.7 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..||..+..|-.+-..|+.++..|-++...|
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTAL 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.26 E-value=16 Score=25.76 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+-+..+..|..+++.|+.+|..|..++..+++.+..|
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666554
No 52
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.09 E-value=7.5 Score=23.25 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+-++.|-+++..|+..|..|..++.-|+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4477888999999999999999998888653
No 53
>KOG0709|consensus
Probab=77.81 E-value=3 Score=33.89 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
-+.|..+|..|+..|..|.+|+..|+..|.+
T Consensus 288 NqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 288 NQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred cHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999998865
No 54
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=10 Score=25.45 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.-=.+.++.||.++..|+.+-..|..+++.|++.+..+
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356778999999999999999999999999988754
No 55
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=76.77 E-value=20 Score=24.08 Aligned_cols=51 Identities=24% Similarity=0.008 Sum_probs=44.6
Q ss_pred chhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 28 VPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 28 rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.|.++.|.++---|.==+..|..||.+...++.-|..|...|..|.-.+.+
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888999999999999999999999999998876654
No 56
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=76.33 E-value=6.5 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 56 AILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..|..+|..|..+++.|.+++.+++.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888877777766553
No 57
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=75.74 E-value=8.8 Score=24.42 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=17.2
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVA------ILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~------~Le~eN~~L~~q~~~L~~~~ 76 (82)
+-|..|..+|+ .+..||..|+.++..|++.+
T Consensus 31 eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 31 EEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554443 35556666666666666554
No 58
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=75.09 E-value=9.2 Score=31.71 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+||+.+-..++.|+.+|..+..++..+..++.+..+
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777789999999999999999998887765
No 59
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=74.60 E-value=16 Score=21.84 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
....+..++.++..++.+|..|..++..|..
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445667777777778888888777777653
No 60
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=74.23 E-value=10 Score=23.32 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|...|..|..|+..|..++...++++..++.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~ 31 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKE 31 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777666553
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=73.71 E-value=15 Score=21.19 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+..|+.....|..+...|..++..|+.+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 62
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.16 E-value=21 Score=23.77 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 41 RRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 41 R~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|.+-...-+.|...+..+..++..|...+..|+..+..+
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ 85 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEEL 85 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544444444444444443
No 63
>smart00340 HALZ homeobox associated leucin zipper.
Probab=73.07 E-value=12 Score=21.18 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 54 RVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
=.+.|..+|..|..+++.|+..
T Consensus 13 cce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999988864
No 64
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.05 E-value=15 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
+-|.-|.-.|+.|...|..|..+++.++
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3445555566667777776666655443
No 65
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.97 E-value=5.4 Score=31.59 Aligned_cols=26 Identities=27% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 56 AILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..|..||..|+.++..|+.+|.+|+.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777653
No 66
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=72.77 E-value=28 Score=24.53 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 36 AAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 36 aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+-|+++.++|-..|+. +.....+...|...+..|-.+...+.
T Consensus 103 l~~~cqKKEkEykealea-~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 103 LGQSCQKKEKEYKEALEA-FNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999987 66666677777777666655555443
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.13 E-value=14 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+.+|+.+...|..++..+..++..|+.+..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 68
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=71.28 E-value=14 Score=28.51 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=17.8
Q ss_pred hHHhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 30 GSVWMEAAKECRRKK-KEYIKCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 30 ~~kNR~aA~~sR~RK-Ke~i~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
.+++|++.-....+. |.-+..+-.++..|..+|..|+...-.+
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRI 67 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455443333222 2333333344444555555444444333
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.09 E-value=14 Score=24.97 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..+|..|..|...|..|-.+|..+...+..
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 70
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.68 E-value=23 Score=22.13 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=34.6
Q ss_pred hhHHhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 29 PGSVWMEAAKECRRKKK-EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKK-e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|.+|..-...++. +-...|-.++..+..+-..|..++..+..++..+
T Consensus 49 r~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 49 RAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888665554443 4566777777777777777777777777766554
No 71
>PRK00295 hypothetical protein; Provisional
Probab=70.63 E-value=20 Score=21.42 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKAL 65 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L 65 (82)
.|.+||.++...+.-...|
T Consensus 6 Ri~~LE~kla~qE~tie~L 24 (68)
T PRK00295 6 RVTELESRQAFQDDTIQAL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778888876544333333
No 72
>KOG4797|consensus
Probab=70.61 E-value=8.2 Score=25.98 Aligned_cols=22 Identities=45% Similarity=0.520 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALI 66 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~ 66 (82)
|+.|.+|+.+...|+.||.-|+
T Consensus 73 k~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 73 KEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444
No 73
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.78 E-value=13 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy1989 58 LENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 58 Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|..|..++..|+.++..|
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 74
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=69.45 E-value=18 Score=21.36 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.+|.+++.||..-.....+++..+.+....+|
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47888888888888888888888888777654
No 75
>PRK04325 hypothetical protein; Provisional
Probab=69.42 E-value=23 Score=21.53 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKAL 65 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L 65 (82)
+.|..||.++...+.-...|
T Consensus 9 ~Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGL 28 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34788888887544433333
No 76
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=69.27 E-value=14 Score=21.49 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.....++..|+.+|..|+.++..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556678899999999999987764
No 77
>PRK04406 hypothetical protein; Provisional
Probab=69.21 E-value=24 Score=21.62 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQ 61 (82)
Q Consensus 46 e~i~~LE~~v~~Le~e 61 (82)
+++..||.+++..+.-
T Consensus 11 ~Ri~~LE~~lAfQE~t 26 (75)
T PRK04406 11 ERINDLECQLAFQEQT 26 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777654433
No 78
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.10 E-value=23 Score=21.42 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKAL 65 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L 65 (82)
++|..||.++...+.-...|
T Consensus 8 ~Ri~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 8 ARLAELESRLAFQEITIEEL 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777787776544333333
No 79
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=68.51 E-value=5.5 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHHhhhhC
Q psy1989 64 ALIDELKSLKELYCQQEME 82 (82)
Q Consensus 64 ~L~~q~~~L~~~~~~lk~~ 82 (82)
.|+.+++.|+.++..||||
T Consensus 28 ~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554
No 80
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.71 E-value=23 Score=21.01 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKAL 65 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L 65 (82)
+.|..||.++..++.-...|
T Consensus 4 ~Ri~~LE~~la~qe~~ie~L 23 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEEL 23 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777776544333333
No 81
>PRK11239 hypothetical protein; Provisional
Probab=67.59 E-value=14 Score=27.30 Aligned_cols=29 Identities=31% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+..|+.+|..|+.+...|+.++..|..++
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46688899998888888888888887764
No 82
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.30 E-value=22 Score=21.00 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
|..|-.+|.+|..+...|+..+...+.+
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444
No 83
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=66.96 E-value=9.3 Score=21.32 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
..+.+||.++..|..+|..|+.++
T Consensus 21 ~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 21 IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345666666666666666666554
No 84
>KOG2483|consensus
Probab=66.71 E-value=23 Score=26.22 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.|.++||..|+............|..+-..|+.++.+|
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql 138 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQL 138 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999998887654444444444444444444443
No 85
>PRK00736 hypothetical protein; Provisional
Probab=66.44 E-value=25 Score=20.97 Aligned_cols=16 Identities=44% Similarity=0.358 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQ 61 (82)
Q Consensus 46 e~i~~LE~~v~~Le~e 61 (82)
++|..||.++...+.-
T Consensus 5 ~Ri~~LE~klafqe~t 20 (68)
T PRK00736 5 ERLTELEIRVAEQEKT 20 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888888654433
No 86
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.24 E-value=26 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
=...|..|+.++..|..+|..|..++..-+.+-..|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578899999999999999999988887776654
No 87
>PRK02119 hypothetical protein; Provisional
Probab=65.89 E-value=27 Score=21.15 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILEN 60 (82)
Q Consensus 46 e~i~~LE~~v~~Le~ 60 (82)
+.+..||.++...+.
T Consensus 9 ~Ri~~LE~rla~QE~ 23 (73)
T PRK02119 9 NRIAELEMKIAFQEN 23 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777765443
No 88
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.63 E-value=15 Score=28.28 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..+..|..++..|+.+|..|+.+...|..+...+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 5678999999999999999999999998665443
No 89
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.59 E-value=17 Score=30.71 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 52 ENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+..++.|+.+|..|...+..|+.++
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333
No 90
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.35 E-value=30 Score=21.79 Aligned_cols=7 Identities=43% Similarity=0.563 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy1989 49 KCLENRV 55 (82)
Q Consensus 49 ~~LE~~v 55 (82)
..||.+|
T Consensus 7 eqLE~KI 13 (79)
T PRK15422 7 EKLEAKV 13 (79)
T ss_pred HHHHHHH
Confidence 3344444
No 91
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=64.88 E-value=17 Score=27.39 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-+..|+.++..|..+|..|..+++.++.++....
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d 66 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAAD 66 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999988876543
No 92
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.76 E-value=34 Score=21.81 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
++.++..+..|+..-..|..++..++..+..+
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666667776677777777776666554
No 93
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.40 E-value=31 Score=24.90 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..-+..|..+++.|+..|..|...+..++.++..|.
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666654
No 94
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.50 E-value=38 Score=22.18 Aligned_cols=33 Identities=33% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.++.++..|+..-..|..++..++..+..+-
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457788888888888888888887776654
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.41 E-value=22 Score=26.21 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
-+.+|..++..|..+...|+-+++.+.-++.++++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34678888899999999999999998888888764
No 96
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.15 E-value=17 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+..++.+...|..+|..|.-+...|.+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666777777777777777777766653
No 97
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.10 E-value=52 Score=23.40 Aligned_cols=29 Identities=21% Similarity=0.037 Sum_probs=19.6
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAIL 58 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~L 58 (82)
++...++-+..+.+..++..++|.++..-
T Consensus 94 RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 94 RLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44446777777777777777777777644
No 98
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.89 E-value=24 Score=22.04 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy1989 59 ENQNKALI 66 (82)
Q Consensus 59 e~eN~~L~ 66 (82)
+.+|..|+
T Consensus 52 ~~eneqlk 59 (79)
T COG3074 52 ERENEQLK 59 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 99
>KOG4797|consensus
Probab=62.09 E-value=23 Score=23.87 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
.+-++.|..++..|+..|..|..+...|+..
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677888888889999999999998888764
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.48 E-value=50 Score=22.62 Aligned_cols=50 Identities=20% Similarity=0.079 Sum_probs=31.0
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+.|...+-.--.-.+..+.+|+.++..+..+...|..++..++.+...|
T Consensus 36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555566677778888887766666666665555555544433
No 101
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=61.30 E-value=9 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALID 67 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~ 67 (82)
.++.+||++|..|..-|+.|-.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 4677888888888888887753
No 102
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=60.83 E-value=32 Score=23.01 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1989 58 LENQNKALIDELKSLKE 74 (82)
Q Consensus 58 Le~eN~~L~~q~~~L~~ 74 (82)
|-.||..|+-++..|+.
T Consensus 34 lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 34 LVEENTALRLENEKLRE 50 (114)
T ss_pred HHHhhHHHHhhHHHHHH
Confidence 33344444444444443
No 103
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=60.73 E-value=33 Score=22.35 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+...++.+..+|..|..+...|..++..|+
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555566666666666666555554
No 104
>KOG4005|consensus
Probab=60.68 E-value=37 Score=25.88 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCCCCccchhch---hHHhHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 18 GPEDSLPKISVP---GSVWMEAAKECRRKKKEY-IKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 18 ~~ee~~~kr~rR---~~kNR~aA~~sR~RKKe~-i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+.||+..+|+.. -..|----++.|.-+-+| |.+|+++-+.|..+|..|+.....|-.+
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAK 126 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677665442 222222234455555555 5677777766666666665555544433
No 105
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.38 E-value=27 Score=25.87 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.5
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.|.|.+.||.+==..- ++-+.-+..|..+++.|...|-.|-..+.-|+.
T Consensus 87 QRDRFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 87 QRDRFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666677776653333 344556788889999999999998888866653
No 106
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.08 E-value=43 Score=21.07 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+.++..+..|+..-..+..++..++..+.
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 107
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.86 E-value=39 Score=20.55 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+.+..|+.+++.++.+-..|..++..+...+..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555555555555555555444
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=58.84 E-value=18 Score=26.96 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 55 VAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+..|..||..|+.++..|+.+..
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766644443
No 109
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=58.41 E-value=87 Score=24.46 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=45.4
Q ss_pred ccCCCcCcCCCCCCCCccchhchhHHhHHHHHHHHHHhHHHH---HHHHH----------------------HHHHHHHH
Q psy1989 7 HNCSSWLRIQVGPEDSLPKISVPGSVWMEAAKECRRKKKEYI---KCLEN----------------------RVAILENQ 61 (82)
Q Consensus 7 ~~~ss~~~~~~~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i---~~LE~----------------------~v~~Le~e 61 (82)
..|+..-...+..+.....+.++++++||+....=+||---+ ..+-. +|--|..+
T Consensus 104 ~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk 183 (323)
T PF08537_consen 104 NACTNINSRLPNRERKSGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKK 183 (323)
T ss_pred HHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHH
Confidence 456555555555555556667789999999988877774322 11111 12346677
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1989 62 NKALIDELKSLKELYCQQ 79 (82)
Q Consensus 62 N~~L~~q~~~L~~~~~~l 79 (82)
+..|..+|..+..++..+
T Consensus 184 ~~~l~~~l~~~~~eL~~~ 201 (323)
T PF08537_consen 184 IDELEERLNDLEKELEIT 201 (323)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777666544
No 110
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=57.99 E-value=24 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 56 AILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..|..+|..|+.++..|+.+..
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 111
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=57.51 E-value=38 Score=20.07 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+..+...+..++.+...+..+...|+.++..|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346667777788888888888888888777654
No 112
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.24 E-value=27 Score=28.47 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
..++.++..|..+|..|+.+++.|++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544443
No 113
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.89 E-value=40 Score=20.03 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
=+.-.-.++.++..-+..|..|..+|..|+.++..+.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444456677788888899999999999998887664
No 114
>PRK15396 murein lipoprotein; Provisional
Probab=56.65 E-value=45 Score=20.75 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.++.|..+|..|..+-..|...+..++..+..-+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~ 59 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665554443
No 115
>PRK00846 hypothetical protein; Provisional
Probab=55.96 E-value=47 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAI 57 (82)
Q Consensus 46 e~i~~LE~~v~~ 57 (82)
++|..||.++..
T Consensus 13 ~Ri~~LE~rlAf 24 (77)
T PRK00846 13 ARLVELETRLSF 24 (77)
T ss_pred HHHHHHHHHHHH
Confidence 566777777754
No 116
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.82 E-value=35 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+++.|+.+-.....++..|+.+..++
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 117
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=55.69 E-value=46 Score=24.17 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELK---SLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~---~L~~~~~~lk 80 (82)
....|..+.+.|+.+|..|..++. .++++..+|+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777776666666 3344444443
No 118
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.64 E-value=50 Score=20.80 Aligned_cols=47 Identities=30% Similarity=0.305 Sum_probs=29.9
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..++..-|...=.++. +.|+..+..|+..-..+..++..+...+.++
T Consensus 81 ve~~~~eA~~~l~~r~---~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKRL---ETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666655555444 4556666777777777777777777766553
No 119
>PRK02119 hypothetical protein; Provisional
Probab=55.57 E-value=44 Score=20.21 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..+|.-+..|...-.....++..|+.++.
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444334444444444333
No 120
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=55.46 E-value=54 Score=21.96 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..||.++-.|-.+...|+.++..|-++-..|
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L 41 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTAL 41 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444444444444444444444444443333
No 121
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=55.38 E-value=37 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..+..|+.+...|..+...+..++..++.++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777778888888887777664
No 122
>PRK14127 cell division protein GpsB; Provisional
Probab=55.21 E-value=37 Score=22.37 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+.|..++..|..+|..|..++..++.++...
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566677788888888888888888776643
No 123
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=54.18 E-value=44 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
+.+..+.+.|+.+...|..+++.++
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555443
No 124
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.01 E-value=33 Score=26.27 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..|.+++..|..++..|..||..|+.++.+.+
T Consensus 215 g~LDvRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 215 GSLDVRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999998886543
No 125
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.88 E-value=25 Score=27.96 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALID 67 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~ 67 (82)
+++..||..||.+|.+|..|...|.+
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998888777764
No 126
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.86 E-value=33 Score=26.07 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|..++..|+.+...|..++..|+.+...+.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666665555555544
No 127
>PRK04406 hypothetical protein; Provisional
Probab=53.70 E-value=49 Score=20.17 Aligned_cols=9 Identities=22% Similarity=0.291 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy1989 51 LENRVAILE 59 (82)
Q Consensus 51 LE~~v~~Le 59 (82)
+|.-++.|.
T Consensus 23 QE~tIe~LN 31 (75)
T PRK04406 23 QEQTIEELN 31 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=53.39 E-value=58 Score=21.97 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+.+..++.++..|+..+..+-.+|..|+..+.+|
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l 47 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL 47 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444
No 129
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=53.36 E-value=59 Score=23.07 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++++..|....+.|+.+|..|..+....+..+..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888888888887776664
No 130
>KOG1853|consensus
Probab=53.09 E-value=74 Score=24.59 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 33 WMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 33 NR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-|.--..+..--.+|-..||.++.+++..|..|...++.|.-++..+|
T Consensus 32 ~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 32 MREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666788888888888888888888888887777666554
No 131
>KOG4343|consensus
Probab=52.72 E-value=20 Score=30.11 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 57 ILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|+...++|..+.+.|+.+-+.|+
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk 329 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLK 329 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355555555555555555555544
No 132
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.53 E-value=55 Score=20.41 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.-+..|-.+|.....+|..|..+.+-|+.-+..|
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777776655544
No 133
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=51.19 E-value=33 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+-.|..||..|+.++..|++++.++
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~ 83 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSY 83 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888887766653
No 134
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=51.06 E-value=50 Score=19.52 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+.+|+.++..|+.|...+..++..-..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888777777765443
No 135
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.45 E-value=70 Score=21.11 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|..+...|+.||..|+-+++-|-..+..
T Consensus 77 lkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335778999999999999888777654
No 136
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.57 E-value=38 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1989 56 AILENQNKALIDELKSLKELY 76 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+.|..+++.|+.++..|+.++
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888888877
No 137
>PLN02320 seryl-tRNA synthetase
Probab=49.28 E-value=74 Score=26.12 Aligned_cols=50 Identities=14% Similarity=-0.021 Sum_probs=28.2
Q ss_pred hhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 29 PGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|..+|.+|.+-...++++-.+.|-.++..|..+-..|..++..+.+++..
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777655443333334555555566666666666666655555544
No 138
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.92 E-value=49 Score=18.80 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1989 62 NKALIDELKSLKELYCQ 78 (82)
Q Consensus 62 N~~L~~q~~~L~~~~~~ 78 (82)
-..|..++..|+.-+.+
T Consensus 8 v~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 8 VEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 139
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=48.74 E-value=5.8 Score=29.64 Aligned_cols=31 Identities=29% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+|..-|..|..+|..|+.++..|+++.+.|
T Consensus 132 ~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 132 ADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567788888888888888777665
No 140
>PF15058 Speriolin_N: Speriolin N terminus
Probab=48.59 E-value=36 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+.|-.+++.|-.||.+|+.++..|++
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556677888888888888877765
No 141
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.94 E-value=1.2e+02 Score=22.89 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=33.4
Q ss_pred hhchhHHhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 26 ISVPGSVWMEAAKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 26 r~rR~~kNR~aA~~sR-~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-+....|+.+++...- ..++.-+..|+.++..+......+..+...+..++..+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777766555 44555566666666666666666666666666666554
No 142
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.89 E-value=68 Score=20.11 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
-+.+-+..|+.+++.++.+-..|..++..+..++..++.
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888888888888888888888877653
No 143
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.87 E-value=76 Score=22.85 Aligned_cols=31 Identities=23% Similarity=0.071 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|..++..|..+...|..++..+...+..+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555443
No 144
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=47.82 E-value=50 Score=21.22 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
++.++..|..++..|..++.-|+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 145
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.69 E-value=63 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..|....+.-..+|..|..++..|..+|..|
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666666655544
No 146
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=46.70 E-value=65 Score=20.81 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|-..+..|+.++..+..+++.|+..+..++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 107 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQK 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666666665554
No 147
>KOG3335|consensus
Probab=46.65 E-value=1e+02 Score=22.23 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
...+..+.+|..++..|+.+-..+...+..|..
T Consensus 102 e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~ 134 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKLENAIAELTKFFSQLHS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777787777776666666666653
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=46.47 E-value=64 Score=24.84 Aligned_cols=32 Identities=34% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..|+.+...|..+...+..++..+++++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 17 IRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555555555443
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.96 E-value=51 Score=25.00 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..++.++..|+.+...|..++..|..+..++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l 76 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREEL 76 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444443
No 150
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=45.82 E-value=42 Score=25.27 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+..|+.+...+..+...+..++..+++++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777776654
No 151
>PHA02109 hypothetical protein
Probab=45.68 E-value=80 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|-+.|..|+.+++.|..|-..++..+..+++.|...
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~ 226 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRR 226 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888777643
No 152
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=45.63 E-value=80 Score=22.97 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+++..+...+..+-.+|..|..++..|..++...
T Consensus 30 eFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 30 EFLDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777788888888888888888877654
No 153
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.63 E-value=84 Score=20.50 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.|+..+..|...-..+..++..+...+.++.
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666655553
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.30 E-value=62 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 57 ILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+++.+.......+..+..+|.-|
T Consensus 71 qa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 155
>PRK04325 hypothetical protein; Provisional
Probab=44.87 E-value=70 Score=19.35 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+..+|.-|+.|...-.....++..|+.++.
T Consensus 18 lAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 18 LAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444444444444444333
No 156
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=44.50 E-value=1.5e+02 Score=24.82 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.=+.|||..|..+=.+...|+...+.+...+..+..
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~ 398 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELES 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999988888887754
No 157
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=44.49 E-value=66 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.||.+...+-..|-.+...+..|..+|.+++
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 158
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.43 E-value=73 Score=19.42 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy1989 57 ILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.|..++..|..+++.++..+.+
T Consensus 47 eLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 159
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=44.42 E-value=71 Score=24.78 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+|+=.+|.+.+....+--.|..|+..|+.++
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~ 94 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQN 94 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 160
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.18 E-value=53 Score=26.16 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.|-|.....||.-+..+..+|..|.-+++.+..+..
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 466677788888888888888888888888877653
No 161
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=44.11 E-value=1.5e+02 Score=23.11 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+...|+.++..|+.++..|..+...++.++..++.|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 23 KLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888777653
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.61 E-value=76 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
...|+.|..+|..|.=++..+..++..+++.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 163
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.57 E-value=1.2e+02 Score=23.85 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=29.0
Q ss_pred hhHHhHHHHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 29 PGSVWMEAAKECRRK-KKEY-IKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 29 R~~kNR~aA~~sR~R-KKe~-i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+.++|.+|..--..+ +++. .+.|-.++..|..+-..|..++..+.+.+..
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776554322 2222 4555556666666666666666666665544
No 164
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=43.15 E-value=29 Score=25.32 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
|+..++.+..++..|+.++..|++...
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444433
No 165
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=42.48 E-value=93 Score=21.29 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|+..+..+..++..|...++..+..|..
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 166
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.33 E-value=63 Score=26.48 Aligned_cols=16 Identities=6% Similarity=-0.082 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1989 64 ALIDELKSLKELYCQQ 79 (82)
Q Consensus 64 ~L~~q~~~L~~~~~~l 79 (82)
.+...|+.|..++.+|
T Consensus 101 dle~KIkeLEaE~~~L 116 (475)
T PRK13729 101 DDQRRIEKLGQDNAAL 116 (475)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 167
>PHA00728 hypothetical protein
Probab=42.12 E-value=52 Score=22.67 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 53 NRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..+++|..+|.+|+..+..|.+.+.
T Consensus 5 teveql~keneelkkkla~leal~n 29 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 3578999999999999998887654
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.94 E-value=94 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 35 ~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..=.+|=.+-++.++.|+..+..|..+...|..+....++.|
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 344556666777778888888887777777777776555544
No 169
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.91 E-value=99 Score=20.26 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 35 EAAKECRRKKKE-YIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 35 ~aA~~sR~RKKe-~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.+.-.-.-+.|+ -+-.++.++..|...|..|...+..|+.++..
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334434444 67778888889999999999999999988764
No 170
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.87 E-value=93 Score=19.94 Aligned_cols=24 Identities=17% Similarity=-0.154 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 57 ILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.++.++..|..++..|+-+..-||
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 171
>KOG0977|consensus
Probab=41.83 E-value=87 Score=26.10 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=28.0
Q ss_pred HHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 39 ECRRKKKEYIKCLENR-------VAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 39 ~sR~RKKe~i~~LE~~-------v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
.+|.+=|.-|..|=++ |..|+.+|..|..++..|+.-+
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555556665554 5689999999999999998754
No 172
>PLN02678 seryl-tRNA synthetase
Probab=41.72 E-value=1.3e+02 Score=24.21 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=26.9
Q ss_pred hhHHhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 29 PGSVWMEAAKECR-RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 29 R~~kNR~aA~~sR-~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+..+|.+|.+--. .+.++-...|-.++..|..+...|..++..+.+++..
T Consensus 53 r~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777755433 2333334455555555555666666666555555543
No 173
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=41.60 E-value=1e+02 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|+..+..|..+|...-..+..|+..|..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544
No 174
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=41.12 E-value=48 Score=24.14 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELK 70 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~ 70 (82)
-|+.++..+..|..+|..|..-+.
T Consensus 133 ~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 133 EIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444333
No 175
>KOG1962|consensus
Probab=40.96 E-value=71 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy1989 58 LENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 58 Le~eN~~L~~q~~~L~~~~~~l 79 (82)
++..+..|..|.+.++.++..|
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHH
Confidence 3344444444444444444444
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.68 E-value=75 Score=27.03 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=26.3
Q ss_pred hhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 29 PGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.-..+++.+.. ..++.|+.+...|+.++..|..++..|.+++.+++
T Consensus 418 ~~~~~~i~~~~------~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 418 TVYEKRIKKLE------ETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred hHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554433 34556666666666666666666666666665543
No 177
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=40.67 E-value=86 Score=19.18 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+..++..++.+...|..+...|+-++..|.
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566777777777777777777666553
No 178
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=40.22 E-value=65 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
-+.+|.++.+|.++|.-|++|+....+..-
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999988776543
No 179
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.71 E-value=1.5e+02 Score=23.42 Aligned_cols=50 Identities=22% Similarity=0.127 Sum_probs=25.0
Q ss_pred hhHHhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 29 PGSVWMEAAKECRR-KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 29 R~~kNR~aA~~sR~-RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|.++|.+|..-... ++++-.+.|-.++..|..+-..|..++..+.+.+..
T Consensus 48 r~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 48 QAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544331 222223445555555555555555555555555443
No 180
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=38.59 E-value=98 Score=19.28 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
=...|.........|..+|.-|..-|..|-.
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777788888888777777654
No 181
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.44 E-value=1.4e+02 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+||.++..|..+-+....++..|..++
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444444444444444444
No 182
>PF15556 Zwint: ZW10 interactor
Probab=37.96 E-value=1.7e+02 Score=21.88 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=21.4
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+|+|+|-..-...--.++..|...+..+...-..-..++..|..++..|
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~l 167 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTL 167 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333334445555555444433333334444444444333
No 183
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.92 E-value=98 Score=19.07 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-+..|+.++..|+.+...+..++..++.++.-|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666666666666666665443
No 184
>KOG1656|consensus
Probab=37.84 E-value=1.3e+02 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.3
Q ss_pred hhHHhHHHHHHHHHHhHHHHHHHHH
Q psy1989 29 PGSVWMEAAKECRRKKKEYIKCLEN 53 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKKe~i~~LE~ 53 (82)
-.-+|+.+|-.|=+|||-|-..|..
T Consensus 55 ~~tkNKR~AlqaLkrKK~~E~qL~q 79 (221)
T KOG1656|consen 55 YGTKNKRMALQALKRKKRYEKQLAQ 79 (221)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999998776654
No 185
>PRK11637 AmiB activator; Provisional
Probab=37.72 E-value=1.2e+02 Score=23.53 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy1989 48 IKCLENRV 55 (82)
Q Consensus 48 i~~LE~~v 55 (82)
+..|+.++
T Consensus 77 l~~l~~qi 84 (428)
T PRK11637 77 LKKQEEAI 84 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 186
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.48 E-value=1.3e+02 Score=22.82 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+..++..+..+|..|..++..|+.++.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~e 166 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYE 166 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555444443
No 187
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.45 E-value=1e+02 Score=19.26 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-+..|+.+++.|+..-..|..++..+..++..++
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677776677777777766666554
No 188
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=37.27 E-value=1.3e+02 Score=23.49 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..|...+..|..+|..|..++..+..++..
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~ 169 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEK 169 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666555555543
No 189
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=37.25 E-value=1e+02 Score=20.95 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 53 NRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+-+..|..+|.-|+..+..+++.+.
T Consensus 85 ETI~~lk~EN~fLKeAl~s~QE~y~ 109 (126)
T PF13118_consen 85 ETIEALKNENRFLKEALYSMQELYE 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346799999999999999988774
No 190
>PF14645 Chibby: Chibby family
Probab=36.93 E-value=1.2e+02 Score=19.89 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..|..+...|+.||.-|+-+++-|-..+.
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567777788877777777665554
No 191
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.86 E-value=1.1e+02 Score=19.49 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 32 VWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 32 kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+...-|...-.++. ..|+..++.|+..-..+..++..+...+.++
T Consensus 83 ~~~~eA~~~l~~r~---~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 83 KDLEEAIEFLDKKI---EELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred ecHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444333 5566777777777777777777777766543
No 192
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=36.79 E-value=1.5e+02 Score=22.32 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..|+.++++|+.+...+..+...++.++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKIRLERELERLRS 34 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777766654
No 193
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.39 E-value=1.3e+02 Score=20.97 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
-++|+..|+..+..++..+..|......|-.-+.
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~ 52 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQRIHKERIEYFDELK 52 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999888888877666654443
No 194
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.35 E-value=1.1e+02 Score=19.34 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.++.|...|..|...-..|...++.++..+..-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aA 57 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAA 57 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666655555443
No 195
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=35.66 E-value=1.1e+02 Score=19.03 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..|+.....|..+-..+..++..+...+.++
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666554
No 196
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.49 E-value=1e+02 Score=23.57 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q psy1989 45 KEYIKCLENRVA-------ILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 45 Ke~i~~LE~~v~-------~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+.-+.++|.++. +|-++...|..||..|+..+..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee 123 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEE 123 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Confidence 455666666663 5666666666666666655543
No 197
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.43 E-value=1.7e+02 Score=24.98 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-+.+..+..+||.|.+.|+.++....+++..+.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555444
No 198
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=35.40 E-value=88 Score=21.01 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
-|++|..+...|.-++..|+..+.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999988754
No 199
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=35.35 E-value=69 Score=21.65 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
+.+|+.+++.=..+|..|..++..|
T Consensus 69 i~~Le~kIs~q~~e~~dlkqeV~dL 93 (120)
T COG4839 69 ITDLESKISEQKTENDDLKQEVKDL 93 (120)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 4556666666666666666666555
No 200
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.02 E-value=1.2e+02 Score=19.23 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 55 VAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
...|..+|..|..+...-..+|.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444443
No 201
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=34.90 E-value=96 Score=18.09 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.|..-|.++. .|..++..|..|+..|+..+.|
T Consensus 27 rY~~vL~~R~-~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 27 RYNKVLLDRA-ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555443 3455566677777777766654
No 202
>KOG1318|consensus
Probab=34.77 E-value=98 Score=24.91 Aligned_cols=28 Identities=36% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+++.+-..|+..|..|..+++.|+.+..
T Consensus 294 E~~~rqk~le~~n~~L~~rieeLk~~~~ 321 (411)
T KOG1318|consen 294 ELENRQKKLESTNQELALRIEELKSEAG 321 (411)
T ss_pred HHHhhhhHHHhHHHHHHHHHHHHHHHHH
Confidence 3333344677778888888887776643
No 203
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=34.28 E-value=1.7e+02 Score=26.55 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..+...|..|+.++..|..+...+..++..|...+..|..
T Consensus 738 ~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999999888888888877754
No 204
>PF15205 PLAC9: Placenta-specific protein 9
Probab=34.07 E-value=1.1e+02 Score=18.95 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
..|.-|+.|+.|-+.|...+..|.
T Consensus 33 ~veKTVEhLeaEvk~LLg~leela 56 (74)
T PF15205_consen 33 TVEKTVEHLEAEVKGLLGLLEELA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556789999998888887663
No 205
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=34.06 E-value=1.9e+02 Score=22.25 Aligned_cols=51 Identities=24% Similarity=0.111 Sum_probs=37.4
Q ss_pred hHHhHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 30 GSVWMEAAKE-CRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 30 ~~kNR~aA~~-sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++=+|+..-. -|++-..-.+.|+.+...|..+|...+..+..|...+..++
T Consensus 91 lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 91 LMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5556666432 35666677788888888888888888888888888777654
No 206
>PRK14154 heat shock protein GrpE; Provisional
Probab=34.06 E-value=1.3e+02 Score=21.81 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q psy1989 58 LENQNKALIDEL 69 (82)
Q Consensus 58 Le~eN~~L~~q~ 69 (82)
|+.+...|...+
T Consensus 64 le~e~~elkd~~ 75 (208)
T PRK14154 64 MERKVDEYKTQY 75 (208)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 207
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.89 E-value=1.6e+02 Score=20.25 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
++-++.|..+++..+.+...|+.|.+.|..++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555666666666666666666666655543
No 208
>PRK14160 heat shock protein GrpE; Provisional
Probab=33.79 E-value=1.2e+02 Score=22.01 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 53 NRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
..+..|+.+...|..++..+++
T Consensus 68 ~~l~~l~~e~~elkd~~lR~~A 89 (211)
T PRK14160 68 EENKKLENELEALKDRLLRTVA 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 209
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=33.63 E-value=1.3e+02 Score=24.78 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..+..++.++..|..+..+|.++++.++++...|
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777777777777776654
No 210
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.22 E-value=1.3e+02 Score=19.05 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+-+..|+.+++.++..-..|..+...|+..+..+.
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888888888888887776653
No 211
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.10 E-value=1.7e+02 Score=25.32 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..--.-+..|..+++.++.+|..|+.++-.|..++....
T Consensus 130 ~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~ 168 (769)
T PF05911_consen 130 SQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN 168 (769)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455678889999999999999999999988876543
No 212
>PHA03155 hypothetical protein; Provisional
Probab=32.98 E-value=86 Score=21.04 Aligned_cols=25 Identities=36% Similarity=0.256 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
-|+.|..+...|.-++..|+..+.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999988754
No 213
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=32.96 E-value=1.7e+02 Score=20.78 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
=++|+..|+..+..++.-+..|......|-..+..
T Consensus 19 ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e 53 (201)
T cd07622 19 LKNYSDELQTNLNNLLKVRARLAERLYGVYKIHAN 53 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999888888877776655543
No 214
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=32.78 E-value=1.3e+02 Score=18.87 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+..+...+..|......+..++..|..+|..+..|
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44556666788888888889999998888887664
No 215
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.24 E-value=1.2e+02 Score=18.31 Aligned_cols=34 Identities=38% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..+..++..+..|+..-..+..++..++..+..+
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888776543
No 216
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=32.17 E-value=1.4e+02 Score=19.86 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALI 66 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~ 66 (82)
.+.++.|+.++..|+.+...+.
T Consensus 111 ~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 111 QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777776665554
No 217
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=32.10 E-value=65 Score=24.00 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1989 54 RVAILENQNKALIDELKSL 72 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L 72 (82)
++..||.|...|+.||..+
T Consensus 123 KIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777654
No 218
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.05 E-value=1.3e+02 Score=19.06 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 57 ILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
.|+.|-..|...+.....+++.|..|
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 56666667777766666666666543
No 219
>KOG0977|consensus
Probab=31.96 E-value=1.3e+02 Score=25.14 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.||+.+..|..+|..|..++..++.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444444555555444444443
No 220
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=31.66 E-value=1.5e+02 Score=24.72 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+.+..|..++..|+.++..|..++..|...+..
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888888888888888888888877765
No 221
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.61 E-value=2e+02 Score=20.85 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..|..++..|..+|..|..+...|+..+.+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 4555566666666666666666665555554
No 222
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=31.47 E-value=73 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
-|.++..++..|+.+...|..++..|...
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35555666666777777777776666543
No 223
>PRK11239 hypothetical protein; Provisional
Probab=31.20 E-value=90 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.055 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
...|+.+...|..++..|+..+..+.
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~ 210 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLL 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666554
No 224
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.73 E-value=1.2e+02 Score=25.41 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
-++.|+.++..+..++..|..++..|.-.+.+|..|
T Consensus 415 amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~e 450 (617)
T PF15070_consen 415 AMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGE 450 (617)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccC
Confidence 467788889999999999999999999888887543
No 225
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.48 E-value=90 Score=22.88 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
.+||.+|+.|+.+-..|+..++.|
T Consensus 188 ~dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777777666655
No 226
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.41 E-value=1.2e+02 Score=24.76 Aligned_cols=29 Identities=38% Similarity=0.255 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|..+...|....+..+.++..|++++.+|
T Consensus 13 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 41 (512)
T TIGR03689 13 LGARNAKLAELLKAARDKLSKLKSQLEQL 41 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444555555555444
No 227
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.40 E-value=1.7e+02 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
.+..|..++..+..+...++..+..|+.+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 228
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.25 E-value=1.3e+02 Score=18.06 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy1989 63 KALIDELKSLKEL 75 (82)
Q Consensus 63 ~~L~~q~~~L~~~ 75 (82)
..|+.++..|+.+
T Consensus 50 ~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 50 NKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 229
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.25 E-value=1.7e+02 Score=19.42 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy1989 62 NKALIDELKSLKEL 75 (82)
Q Consensus 62 N~~L~~q~~~L~~~ 75 (82)
...|..++..|+..
T Consensus 70 ~~~L~~el~~l~~r 83 (120)
T PF12325_consen 70 VEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444433333
No 230
>KOG0483|consensus
Probab=30.19 E-value=95 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.|..+|..|..++..|..++.
T Consensus 123 ~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 123 SLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred HHhhhhhHHHHHHHHHHHHHh
Confidence 344445555555555544443
No 231
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=30.08 E-value=3.1e+02 Score=22.50 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=25.4
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
.-+|...|+.--.+-.+...+|..++..|..+...|..+.+.|.+.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666555555555666666665555555555544444433
No 232
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=29.91 E-value=17 Score=23.51 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+.+||..+..|+.+-..|+.++..|..+
T Consensus 15 ~~~LE~~l~~l~~el~~L~~~l~eLe~~ 42 (118)
T PF08286_consen 15 LSDLESELESLQSELEELKEELEELEEQ 42 (118)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666555543
No 233
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=29.55 E-value=1.4e+02 Score=18.32 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.+..|.++-..+.-|+=.|+.++...+.++.+
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777888888888888888877764
No 234
>PRK00295 hypothetical protein; Provisional
Probab=29.43 E-value=1.3e+02 Score=17.86 Aligned_cols=31 Identities=6% Similarity=0.027 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+..+|.-++.|...-.....++..|+.++..
T Consensus 14 la~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 14 QAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444444433
No 235
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=29.38 E-value=1.2e+02 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
|.-.|.++..|..+|..|..++..|-
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666665553
No 236
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=29.15 E-value=1.2e+02 Score=22.63 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
+..+..++..|+.||+.|+..+
T Consensus 85 ~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 85 LEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555443
No 237
>PRK14162 heat shock protein GrpE; Provisional
Probab=29.07 E-value=2e+02 Score=20.66 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
|+.++..|+.+...|...+..+++.+.
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfe 70 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQ 70 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 238
>PRK01203 prefoldin subunit alpha; Provisional
Probab=29.00 E-value=1.9e+02 Score=19.61 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+++.++..|+.+-..|.+++..|+....
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~s 31 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLS 31 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666655443
No 239
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.92 E-value=1.5e+02 Score=18.37 Aligned_cols=42 Identities=29% Similarity=0.364 Sum_probs=22.8
Q ss_pred hhHHhHHHH-HHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 29 PGSVWMEAA-KECRRKKK----EYIKCLENRVAILENQNKALIDELK 70 (82)
Q Consensus 29 R~~kNR~aA-~~sR~RKK----e~i~~LE~~v~~Le~eN~~L~~q~~ 70 (82)
.++++=.+| .+-|.||. +-+..|..++..|..+|..|..++.
T Consensus 53 ~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 53 QLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444433 33344443 3455666666677777777766653
No 240
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=28.81 E-value=1.4e+02 Score=18.06 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
|.+|+.++.-|..|...|..++
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555555554
No 241
>PHA03162 hypothetical protein; Provisional
Probab=28.69 E-value=1.2e+02 Score=20.98 Aligned_cols=23 Identities=26% Similarity=0.081 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 55 VAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
|++|..+...|.-++..|+..+.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988774
No 242
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.49 E-value=1.2e+02 Score=17.16 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1989 61 QNKALIDELKSLKELYC 77 (82)
Q Consensus 61 eN~~L~~q~~~L~~~~~ 77 (82)
++..+..++..++.++.
T Consensus 49 ~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 243
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.33 E-value=1.1e+02 Score=24.41 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
-.|..+=..|..||..|+.++..|.+++.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666777777777777777776664
No 244
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=28.27 E-value=90 Score=21.09 Aligned_cols=20 Identities=40% Similarity=0.375 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELKSLKELY 76 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~ 76 (82)
.|.+|-..|..++..|++++
T Consensus 100 ~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 100 ELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHh
Confidence 45555555666665555544
No 245
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=28.19 E-value=1.8e+02 Score=19.06 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
-|..+..++.|+..|.=.++.|-..|..|-.
T Consensus 38 ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 38 KEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888888888888888877643
No 246
>KOG3156|consensus
Probab=28.18 E-value=2.4e+02 Score=20.98 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 55 VAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
...|.++|..|+.+++.++..+
T Consensus 118 F~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 118 FANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544
No 247
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=28.08 E-value=1.2e+02 Score=24.14 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
-.++|.+.|-..+.. +...=+..+..|+.++-+++||
T Consensus 38 s~ReytE~La~~l~~---qd~~WK~kae~LE~EvLqlrQe 74 (375)
T PF13971_consen 38 SSREYTEHLAKRLSE---QDESWKSKAEALEAEVLQLRQE 74 (375)
T ss_pred CHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHH
Confidence 356888888766643 3333445555555555555553
No 248
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=27.78 E-value=2.1e+02 Score=19.72 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..++|+..|+..+..|..-...|..+...|-..+..
T Consensus 28 ~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e 63 (236)
T PF09325_consen 28 EIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAE 63 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999988887777777776666554443
No 249
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.65 E-value=1.7e+02 Score=18.60 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
.|+..+..|+..-..+..++..+...+
T Consensus 97 ~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 97 ELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544443
No 250
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.65 E-value=2.1e+02 Score=19.80 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..-...+..|+..+.....-+..|..++..|+-++.
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555444444444444444444443
No 251
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.61 E-value=1.4e+02 Score=17.72 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..|+..|+..+..+..+-..+..++...+..+..
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~ 84 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQAREELQE 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666655543
No 252
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.38 E-value=1.6e+02 Score=22.29 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+-.++..+..++..+..++..|+.++..+
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444433
No 253
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.33 E-value=1.7e+02 Score=18.47 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 37 AKECRRKKKEYIKCLENRVAILENQNKALIDELKS 71 (82)
Q Consensus 37 A~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~ 71 (82)
+.+-+..+..-|..|...+..|..+...|...+..
T Consensus 72 e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 72 EKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 254
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.28 E-value=1.8e+02 Score=18.95 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.|+..+..++.....|..|+..|-.++.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555543
No 255
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.24 E-value=2e+02 Score=20.63 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy1989 58 LENQNKALIDELKS 71 (82)
Q Consensus 58 Le~eN~~L~~q~~~ 71 (82)
|+..+..|..++..
T Consensus 202 Le~~id~le~eL~~ 215 (237)
T PF00261_consen 202 LEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 256
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.22 E-value=1.9e+02 Score=21.88 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.+..+-..+..++..++..+.
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik 83 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIK 83 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 257
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.11 E-value=1.4e+02 Score=17.56 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.+|.-++.|...-.....++..|+.++..
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 258
>PRK14140 heat shock protein GrpE; Provisional
Probab=26.85 E-value=2.4e+02 Score=20.16 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.+..|+.++..|+.+...|...+..+.+.+..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN 69 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFEN 69 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 259
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.84 E-value=1.9e+02 Score=18.84 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..|+.++..|+..-..|..++..++..+.
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 125 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIA 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 260
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.62 E-value=1.2e+02 Score=17.75 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy1989 47 YIKCLENRVAILE-NQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 47 ~i~~LE~~v~~Le-~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.|..|+.++..+. +.-..+...+...+..+..|+.
T Consensus 40 ~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 40 LLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443332 3444555666666666555543
No 261
>KOG4643|consensus
Probab=26.54 E-value=1.8e+02 Score=26.56 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
........|+..+-.|+.+|..|..+|..|..
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556677888888899999999999999987
No 262
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.45 E-value=68 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1989 54 RVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+++.|+.+..+|++|+..|..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 344444444444444444333
No 263
>KOG0483|consensus
Probab=26.45 E-value=1.4e+02 Score=21.51 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
...||..+..|......|..+...|+.++..|..
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~ 140 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVA 140 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3456777777888888888888888888777653
No 264
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.12 E-value=1.5e+02 Score=17.70 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+..+|.-++.|...-.....++..|+.++..
T Consensus 17 lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 17 LAFQEITIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 265
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.01 E-value=2.6e+02 Score=21.68 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
.|.++|.++..|+.....+...+..+...
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~ 173 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKR 173 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555554444444444444443333
No 266
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.92 E-value=2.5e+02 Score=20.39 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELKSLKELY 76 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~ 76 (82)
.++.+|+.|..++..|+++.
T Consensus 92 qlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 267
>KOG2483|consensus
Probab=25.90 E-value=2.5e+02 Score=20.75 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 37 AKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 37 A~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
|..+-.+=.......+..++.|..+|..|..++..|..
T Consensus 103 A~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~ 140 (232)
T KOG2483|consen 103 ALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSL 140 (232)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555555566677788888999999998888773
No 268
>KOG0982|consensus
Probab=25.83 E-value=3.8e+02 Score=22.15 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-++.|+.++..|+.+|..|+..+..|+...-.|.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666777888888888888888877665543
No 269
>KOG4301|consensus
Probab=25.81 E-value=1.4e+02 Score=24.01 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+-+.+++..+..||.+|.++.+++..|.-
T Consensus 404 davkq~r~lia~lE~~n~~i~~E~~rl~l 432 (434)
T KOG4301|consen 404 DAVKQQRQLIAELENKNREILQEIQRLRL 432 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888889999999999999887753
No 270
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=25.35 E-value=48 Score=22.03 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
++.+|-..+..++.....|..++..|..++..
T Consensus 77 ~~~~l~~~~~~~~~~l~~l~a~Le~l~~~L~~ 108 (109)
T PF03955_consen 77 SYSELKANLTALEDKLTALLAQLEALKQQLAE 108 (109)
T ss_dssp --SSTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444445556666677777777777766654
No 271
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.32 E-value=2.3e+02 Score=19.32 Aligned_cols=22 Identities=14% Similarity=-0.171 Sum_probs=15.0
Q ss_pred hhHHhHHHHHHHHHHhHHHHHH
Q psy1989 29 PGSVWMEAAKECRRKKKEYIKC 50 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKKe~i~~ 50 (82)
..+++...|...=.||.+++..
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~ 102 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDK 102 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766655
No 272
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=25.27 E-value=2e+02 Score=22.32 Aligned_cols=26 Identities=50% Similarity=0.611 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 57 ILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
-|+..|+.|..+...|++.++++.-|
T Consensus 275 llEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 275 LLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999987643
No 273
>PRK14151 heat shock protein GrpE; Provisional
Probab=25.13 E-value=2.2e+02 Score=20.00 Aligned_cols=25 Identities=32% Similarity=0.163 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
|+.++..|+.+...|...+..+.+.
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae 49 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAAD 49 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 274
>PF15294 Leu_zip: Leucine zipper
Probab=24.87 E-value=1.8e+02 Score=22.23 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.+=+..+..+|......-.+...|..++..|+.
T Consensus 142 ~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 142 EKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567778888888888888888888888877
No 275
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=24.82 E-value=79 Score=21.53 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 41 RRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 41 R~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+||+..-..+...++....+|-.+..|+..|+..+..+.
T Consensus 78 ~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS 117 (133)
T PF06424_consen 78 SRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVS 117 (133)
T ss_pred hcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCC
Confidence 3455555556666677777777788888888887766543
No 276
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=24.64 E-value=2.2e+02 Score=20.24 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
.++.||..||..+..|-..-..|-.+-..|
T Consensus 16 ~~k~~i~~Le~~Lk~l~~~~e~lv~~r~el 45 (224)
T cd07623 16 EKQQQIENLDQQLRKLHASVESLVNHRKEL 45 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999887766665555544443
No 277
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.53 E-value=2.6e+02 Score=19.84 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..|+.++..|+.+...|...+-.+.+.+
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~Aef 62 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAET 62 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 278
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.45 E-value=2.5e+02 Score=19.46 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 57 ILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+..+.+.|..++..|+.++.+|
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655554
No 279
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=24.39 E-value=2.1e+02 Score=22.30 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-..|-++|..|...|.++++++...+..+..|.
T Consensus 80 ~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 80 WISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345778899999999999999988888777664
No 280
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=2.4e+02 Score=19.34 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 53 NRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.-...|...-..|-..+..+..+..+
T Consensus 108 ~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 108 KAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 281
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.22 E-value=2.2e+02 Score=20.92 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
..|+.||..||..+..|-..-..|-.+-
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r 52 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHR 52 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999998877665555444443
No 282
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=24.15 E-value=2.2e+02 Score=19.53 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 52 ENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
=.+++.|..+...|-.++.+|+.+.
T Consensus 106 laqLealsqqL~~ls~qv~~L~~~~ 130 (135)
T PHA03385 106 LAQLEALSQQLQELSQQVAQLREQT 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3334444455555555555555443
No 283
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.14 E-value=2.3e+02 Score=19.98 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|-..++.....|..|...+..|...+..+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666777777777766666554
No 284
>PF14282 FlxA: FlxA-like protein
Probab=24.02 E-value=2e+02 Score=18.29 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1989 63 KALIDELKSLKELYCQQ 79 (82)
Q Consensus 63 ~~L~~q~~~L~~~~~~l 79 (82)
..|..+|..|+.++.++
T Consensus 54 q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 285
>PRK00736 hypothetical protein; Provisional
Probab=24.02 E-value=1.7e+02 Score=17.35 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|.-++.|...-.....++..|+.++..|
T Consensus 14 lafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 14 VAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444444444444433
No 286
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.91 E-value=2.7e+02 Score=19.78 Aligned_cols=30 Identities=40% Similarity=0.448 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
-.|..|...+..|..+...|..++..|+..
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555555555555555543
No 287
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.83 E-value=3.3e+02 Score=20.71 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+.-++.++..+...+.+-+.+..++...+..+.+|++|
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~ 243 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEME 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677778888888888888888888764
No 288
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=23.28 E-value=2.7e+02 Score=19.41 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..|...|+.++..++.+...|...+.....++...
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~ 112 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAAT 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999999988888777654
No 289
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.05 E-value=2.9e+02 Score=19.80 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
|+..+..|+.+...|...+..+.+.
T Consensus 45 l~~~l~~l~~e~~elkd~~lR~~Ae 69 (195)
T PRK14148 45 AKDTIKELEDSCDQFKDEALRAKAE 69 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333333
No 290
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.02 E-value=1.9e+02 Score=17.62 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.-+.+-..|..++...++.+..++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666665555544
No 291
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.95 E-value=2.8e+02 Score=21.57 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
|-|..++.-...+..|..+|..|......|..
T Consensus 50 KQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 50 KQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 33344444444444555555555555555543
No 292
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=22.94 E-value=1.8e+02 Score=19.15 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 56 AILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..++.+...|..+++.|+..|.+..
T Consensus 48 ~ege~~~qkL~eqteeLK~kvqe~s 72 (106)
T PF12443_consen 48 REGEQMIQKLGEQTEELKDKVQEFS 72 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666665543
No 293
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=22.75 E-value=1.1e+02 Score=18.63 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy1989 64 ALIDELKSLKELYCQQE 80 (82)
Q Consensus 64 ~L~~q~~~L~~~~~~lk 80 (82)
.|..++..|+.++..|+
T Consensus 67 ~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 67 DLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46666666666666654
No 294
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.69 E-value=2.6e+02 Score=19.03 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++..++..++.+..+-+.|......+.+.+..|+
T Consensus 48 ~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 48 VIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444444444443
No 295
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.64 E-value=3.2e+02 Score=20.81 Aligned_cols=14 Identities=43% Similarity=0.411 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELK 70 (82)
Q Consensus 57 ~Le~eN~~L~~q~~ 70 (82)
.|+.+|..|...+.
T Consensus 174 ~le~E~s~LeE~~~ 187 (290)
T COG4026 174 RLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 296
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.53 E-value=2.5e+02 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDE 68 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q 68 (82)
..++.||..||..+..|-..-..|-.+
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~ 51 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCH 51 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999987766555544443
No 297
>PHA02047 phage lambda Rz1-like protein
Probab=22.50 E-value=2.4e+02 Score=18.53 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 52 ENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+...+.|.++-..+..++..++..|..|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l 60 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAV 60 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 298
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.43 E-value=2e+02 Score=18.86 Aligned_cols=6 Identities=33% Similarity=-0.147 Sum_probs=2.3
Q ss_pred HhHHHH
Q psy1989 32 VWMEAA 37 (82)
Q Consensus 32 kNR~aA 37 (82)
.|+.-|
T Consensus 42 ~n~~lA 47 (150)
T PF07200_consen 42 ENEELA 47 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
No 299
>KOG1760|consensus
Probab=22.37 E-value=2.7e+02 Score=19.10 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 56 AILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.|+.+...|.+.+..+...+.+||
T Consensus 91 e~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 91 ETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 300
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.34 E-value=1.5e+02 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 55 VAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
++.|..+-..|+.|+.+|+..+.
T Consensus 27 i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 27 IKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666665544
No 301
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.28 E-value=2.9e+02 Score=21.66 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..-++++..++.++..|..+...+..++..++..+
T Consensus 170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i 204 (562)
T PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNI 204 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33455555555555555555555555555444333
No 302
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.21 E-value=1.2e+02 Score=25.13 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy1989 60 NQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 60 ~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+++.|..|+..|+.+|.+|.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~ 45 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELR 45 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776664
No 303
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.13 E-value=2.2e+02 Score=20.05 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 53 NRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+.+.|..-|..|+.|+...+.....|.
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~ 101 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQ 101 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766666655555543
No 304
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=21.98 E-value=3.9e+02 Score=21.31 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=28.9
Q ss_pred HHHHHHhH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh
Q psy1989 38 KECRRKKK---EYIKCLENRVAILENQNK--ALIDELKSLKELYCQQE 80 (82)
Q Consensus 38 ~~sR~RKK---e~i~~LE~~v~~Le~eN~--~L~~q~~~L~~~~~~lk 80 (82)
.+||-|.+ .....|+.+.+.++.+.. .|..++..+++++..+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (438)
T PTZ00361 54 TKCRLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLR 101 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 56775544 345556666666666663 77888888888887765
No 305
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.69 E-value=2.7e+02 Score=18.87 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..+......+..+.......+..++..+...
T Consensus 87 ~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 87 HFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 306
>PRK11637 AmiB activator; Provisional
Probab=21.67 E-value=3.9e+02 Score=20.71 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..+..++..+..|..+...+..++..++.++
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 307
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.26 E-value=2.9e+02 Score=19.11 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
++|+..|+..+..+...+..|......|-.-+.
T Consensus 10 ~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~ 42 (185)
T cd07628 10 REKSDKLDENLTKIDKIFAKVVKRQSDLSVDYA 42 (185)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 588889999888888877777766666554443
No 308
>PF15058 Speriolin_N: Speriolin N terminus
Probab=21.17 E-value=1.5e+02 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|+.|..++..|..++..|+.+|.-++
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455666666667777777776666554
No 309
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.05 E-value=2.6e+02 Score=18.54 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 21 DSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 21 e~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
|...+...+..|||+|-.. |..++-.....-.-|..+|..+.+|-+.+-
T Consensus 51 ER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqqsid 99 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQSID 99 (121)
T ss_pred HHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHHhHH
Confidence 4444556678888887532 223444444444457777777776655543
No 310
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.94 E-value=3.1e+02 Score=19.38 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+..+..++..+..|+-++..|...+..+..+-..
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555544433
No 311
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.69 E-value=2.4e+02 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAIL 58 (82)
Q Consensus 45 Ke~i~~LE~~v~~L 58 (82)
..++..+|.++..|
T Consensus 48 ~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 48 DRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHhC
Confidence 44555555555543
No 312
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.57 E-value=2.9e+02 Score=18.83 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q psy1989 42 RKKKEYIKCLENRVAILEN---QNKALIDELKSLKELYCQ 78 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~---eN~~L~~q~~~L~~~~~~ 78 (82)
.--+.-+......+..|.. .|..|..++..|+..+..
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3334444555555556665 666777777777766653
No 313
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=20.44 E-value=1.9e+02 Score=20.42 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1989 52 ENRVAILENQNKALIDEL 69 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~ 69 (82)
...+.+|+.||..|+.-+
T Consensus 159 qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 159 QEIIAQLETENKGLRELL 176 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566777777777655
No 314
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=20.30 E-value=3.1e+02 Score=19.08 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=40.4
Q ss_pred hhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 26 ISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 26 r~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..+++++.+-.|...-++|-.-...|..++..-+.....+...|..|-..+..
T Consensus 85 Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 85 EMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888988888888888888888877777777777777777666543
No 315
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=20.20 E-value=34 Score=25.61 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+--|..|++....+..|..-...|..+++.|+.++.+|+-|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae 158 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAE 158 (243)
T ss_dssp -----------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888889988888999999999998888754
No 316
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.19 E-value=3.8e+02 Score=20.75 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+.|..||.++..++.....+..++..|...+
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl 181 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKL 181 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566666666655555555555554444433
No 317
>PRK09039 hypothetical protein; Validated
Probab=20.18 E-value=4.1e+02 Score=20.37 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..|+..+..++.+......++..|...+
T Consensus 154 a~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 154 AALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444443333
No 318
>KOG2991|consensus
Probab=20.09 E-value=2.1e+02 Score=22.18 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAI 57 (82)
Q Consensus 46 e~i~~LE~~v~~ 57 (82)
+++.+|...|+.
T Consensus 264 dfm~eLdedVEg 275 (330)
T KOG2991|consen 264 DFMEELDEDVEG 275 (330)
T ss_pred HHHHHHHHHHhc
Confidence 345555555553
No 319
>KOG1319|consensus
Probab=20.07 E-value=3.7e+02 Score=19.87 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 57 ILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.|..+...-..++..|+.+|..|++
T Consensus 116 ~L~~~k~kqe~e~s~L~k~vtAL~i 140 (229)
T KOG1319|consen 116 FLHKEKKKQEEEVSTLRKDVTALKI 140 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777788888777764
Done!