Query psy1989
Match_columns 82
No_of_seqs 101 out of 657
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:20:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.7 3.9E-17 1.3E-21 96.5 8.4 57 25-81 1-57 (61)
2 2wt7_A Proto-oncogene protein 99.7 9.4E-17 3.2E-21 95.6 8.4 57 25-81 2-58 (63)
3 1jnm_A Proto-oncogene C-JUN; B 99.7 1.5E-16 5.2E-21 94.3 7.9 57 25-81 1-57 (62)
4 1dh3_A Transcription factor CR 99.7 2E-16 6.7E-21 92.4 5.8 54 25-78 1-54 (55)
5 2dgc_A Protein (GCN4); basic d 99.6 8.8E-15 3E-19 87.4 6.8 56 23-78 7-62 (63)
6 1ci6_A Transcription factor AT 99.5 4.4E-14 1.5E-18 84.2 7.4 57 25-81 2-58 (63)
7 1gu4_A CAAT/enhancer binding p 99.3 3.4E-11 1.2E-15 74.6 8.7 63 19-81 9-71 (78)
8 1hjb_A Ccaat/enhancer binding 99.2 6E-11 2.1E-15 74.8 8.6 63 19-81 9-71 (87)
9 1gd2_E Transcription factor PA 99.0 1.8E-09 6E-14 65.7 7.0 55 27-81 10-64 (70)
10 3a5t_A Transcription factor MA 98.7 4.5E-10 1.5E-14 73.2 -2.4 63 18-80 30-92 (107)
11 2wt7_B Transcription factor MA 98.7 1.1E-07 3.8E-12 60.2 8.1 61 21-81 23-83 (90)
12 1skn_P DNA-binding domain of S 97.8 5.1E-06 1.8E-10 52.6 1.1 29 24-52 61-89 (92)
13 2oqq_A Transcription factor HY 97.6 0.00021 7.1E-09 39.4 5.5 37 45-81 2-38 (42)
14 2oxj_A Hybrid alpha/beta pepti 97.0 0.0014 4.9E-08 34.4 4.4 32 46-77 1-32 (34)
15 1kd8_B GABH BLL, GCN4 acid bas 96.8 0.0037 1.3E-07 33.2 4.9 33 47-79 2-34 (36)
16 3m48_A General control protein 96.7 0.0019 6.4E-08 33.8 3.5 31 47-77 1-31 (33)
17 3c3f_A Alpha/beta peptide with 96.7 0.0035 1.2E-07 32.9 4.4 32 46-77 1-32 (34)
18 2kz5_A Transcription factor NF 96.7 3E-05 1E-09 49.0 -4.4 24 24-47 65-88 (91)
19 1kd8_A GABH AIV, GCN4 acid bas 96.6 0.0033 1.1E-07 33.4 3.9 32 47-78 2-33 (36)
20 3c3g_A Alpha/beta peptide with 96.5 0.0085 2.9E-07 31.3 5.0 30 48-77 2-31 (33)
21 2c9l_Y EB1, zebra, BZLF1 trans 96.5 0.022 7.5E-07 33.1 7.2 43 27-69 3-45 (63)
22 2wq1_A General control protein 96.2 0.014 4.9E-07 30.4 5.0 29 48-76 2-30 (33)
23 2bni_A General control protein 96.2 0.0057 1.9E-07 32.2 3.5 32 46-77 1-32 (34)
24 2hy6_A General control protein 96.2 0.0098 3.4E-07 31.2 4.2 31 47-77 2-32 (34)
25 1uo4_A General control protein 96.1 0.0085 2.9E-07 31.5 3.7 31 47-77 2-32 (34)
26 1nkp_B MAX protein, MYC proto- 95.1 0.053 1.8E-06 32.5 5.3 36 45-80 46-81 (83)
27 2r2v_A GCN4 leucine zipper; co 94.8 0.097 3.3E-06 27.4 5.0 31 47-77 2-32 (34)
28 1nlw_A MAD protein, MAX dimeri 94.7 0.11 3.9E-06 31.3 5.9 36 44-79 45-80 (80)
29 1nkp_A C-MYC, MYC proto-oncoge 94.0 0.16 5.5E-06 31.1 5.7 37 44-80 50-86 (88)
30 3ra3_A P1C; coiled coil domain 93.9 0.11 3.7E-06 25.7 3.7 26 56-81 3-28 (28)
31 1am9_A Srebp-1A, protein (ster 92.1 0.34 1.1E-05 29.1 5.0 29 45-73 49-77 (82)
32 2lz1_A Nuclear factor erythroi 92.0 0.0012 4.1E-08 41.6 -6.3 22 25-46 66-87 (90)
33 1gd2_E Transcription factor PA 92.0 0.28 9.5E-06 29.2 4.4 35 46-80 36-70 (70)
34 2jee_A YIIU; FTSZ, septum, coi 91.9 0.43 1.5E-05 29.3 5.3 36 47-82 21-63 (81)
35 3he5_A Synzip1; heterodimeric 90.4 0.84 2.9E-05 25.0 4.9 29 47-75 4-32 (49)
36 1dip_A Delta-sleep-inducing pe 90.0 0.44 1.5E-05 29.0 3.9 23 45-67 21-43 (78)
37 2wuj_A Septum site-determining 89.8 0.45 1.5E-05 26.9 3.7 30 46-75 27-56 (57)
38 2yy0_A C-MYC-binding protein; 89.7 0.78 2.7E-05 25.7 4.6 28 53-80 19-46 (53)
39 1hjb_A Ccaat/enhancer binding 88.7 2.8 9.6E-05 25.7 7.5 65 15-79 8-76 (87)
40 2oqq_A Transcription factor HY 87.0 2.4 8.2E-05 23.0 5.5 23 47-69 18-40 (42)
41 1jcd_A Major outer membrane li 86.8 2.2 7.5E-05 24.0 5.3 35 47-81 5-39 (52)
42 3ra3_B P2F; coiled coil domain 86.0 1.1 3.7E-05 22.0 3.2 27 55-81 2-28 (28)
43 1p9i_A Cortexillin I/GCN4 hybr 86.0 1.6 5.5E-05 21.8 3.9 27 50-76 3-29 (31)
44 2w6a_A ARF GTPase-activating p 85.9 3.6 0.00012 24.0 6.6 52 15-79 2-53 (63)
45 1gu4_A CAAT/enhancer binding p 85.3 2.6 8.7E-05 25.4 5.4 64 15-78 8-75 (78)
46 4dzn_A Coiled-coil peptide CC- 85.0 2.5 8.7E-05 21.4 4.5 27 55-81 4-30 (33)
47 3m91_A Proteasome-associated A 84.6 3.3 0.00011 23.1 5.3 34 48-81 11-44 (51)
48 1fmh_A General control protein 84.6 2.7 9.1E-05 21.3 4.8 27 48-74 3-29 (33)
49 3m48_A General control protein 84.5 1.4 4.8E-05 22.8 3.3 26 55-80 2-27 (33)
50 1kd8_B GABH BLL, GCN4 acid bas 83.5 1.9 6.6E-05 22.6 3.7 27 54-80 2-28 (36)
51 3s4r_A Vimentin; alpha-helix, 83.3 4.1 0.00014 25.0 5.8 37 45-81 55-91 (93)
52 1zme_C Proline utilization tra 83.3 1.4 4.8E-05 24.6 3.4 25 45-69 43-67 (70)
53 1t2k_D Cyclic-AMP-dependent tr 83.1 4 0.00014 22.9 5.3 31 46-76 29-59 (61)
54 2oxj_A Hybrid alpha/beta pepti 82.9 2.2 7.4E-05 22.2 3.7 27 54-80 2-28 (34)
55 3c3f_A Alpha/beta peptide with 82.7 2.2 7.6E-05 22.1 3.7 27 54-80 2-28 (34)
56 3s9g_A Protein hexim1; cyclin 82.5 2.5 8.4E-05 27.0 4.6 28 46-73 65-92 (104)
57 2yy0_A C-MYC-binding protein; 82.3 3 0.0001 23.3 4.5 31 48-78 21-51 (53)
58 1uii_A Geminin; human, DNA rep 82.0 4 0.00014 25.0 5.3 33 47-79 47-79 (83)
59 1go4_E MAD1 (mitotic arrest de 81.6 4.5 0.00015 25.5 5.6 33 46-78 12-44 (100)
60 1uo4_A General control protein 81.1 2.5 8.5E-05 21.9 3.5 27 54-80 2-28 (34)
61 3m9b_A Proteasome-associated A 80.8 1.6 5.5E-05 31.7 3.7 33 48-80 56-95 (251)
62 1deb_A APC protein, adenomatou 80.3 4.6 0.00016 22.8 4.8 31 49-79 6-36 (54)
63 3c3g_A Alpha/beta peptide with 80.2 3.1 0.00011 21.4 3.7 26 55-80 2-27 (33)
64 2dgc_A Protein (GCN4); basic d 79.8 4.5 0.00015 23.1 4.8 28 55-82 32-59 (63)
65 1ci6_A Transcription factor AT 79.6 6.4 0.00022 22.3 5.4 32 46-77 30-61 (63)
66 1dh3_A Transcription factor CR 79.3 4.3 0.00015 22.6 4.5 28 55-82 24-51 (55)
67 1kd8_A GABH AIV, GCN4 acid bas 78.9 2.2 7.6E-05 22.4 2.9 26 55-80 3-28 (36)
68 1hlo_A Protein (transcription 78.6 2.4 8.1E-05 25.0 3.4 22 46-67 57-78 (80)
69 2oa5_A Hypothetical protein BQ 78.0 1.5 5.1E-05 28.3 2.5 24 47-70 9-32 (110)
70 3nmd_A CGMP dependent protein 77.9 3.6 0.00012 24.6 4.0 31 44-74 38-68 (72)
71 4ath_A MITF, microphthalmia-as 77.5 8.5 0.00029 23.5 5.7 32 44-75 37-78 (83)
72 2bni_A General control protein 76.2 4.3 0.00015 21.0 3.5 27 54-80 2-28 (34)
73 1t6f_A Geminin; coiled-coil, c 74.7 3.3 0.00011 21.8 2.9 21 61-81 8-28 (37)
74 2wq1_A General control protein 74.7 5.6 0.00019 20.4 3.7 26 55-80 2-27 (33)
75 1uii_A Geminin; human, DNA rep 74.6 2.6 9E-05 25.9 2.9 21 61-81 47-67 (83)
76 3s9g_A Protein hexim1; cyclin 73.9 7.1 0.00024 24.8 4.8 18 50-67 41-58 (104)
77 3cve_A Homer protein homolog 1 73.5 7.3 0.00025 23.2 4.6 27 51-77 5-31 (72)
78 1gk7_A Vimentin; intermediate 73.3 3.5 0.00012 21.7 2.8 19 53-71 20-38 (39)
79 2wt7_B Transcription factor MA 73.0 5.4 0.00019 24.6 4.1 44 39-82 30-77 (90)
80 3s4r_A Vimentin; alpha-helix, 72.8 9.4 0.00032 23.3 5.2 22 53-74 23-44 (93)
81 2hy6_A General control protein 72.6 6 0.00021 20.4 3.5 27 54-80 2-28 (34)
82 2zxx_A Geminin; coiled-coil, c 71.7 3.4 0.00012 25.1 2.9 18 50-67 45-62 (79)
83 2v71_A Nuclear distribution pr 71.0 12 0.00043 25.8 6.0 41 40-80 36-76 (189)
84 2er8_A Regulatory protein Leu3 70.9 2.7 9.2E-05 23.6 2.2 21 45-65 48-68 (72)
85 1jnm_A Proto-oncogene C-JUN; B 70.5 7.7 0.00026 21.7 4.1 28 48-75 31-58 (62)
86 2xdj_A Uncharacterized protein 70.1 15 0.0005 22.2 5.5 34 48-81 22-55 (83)
87 3ol1_A Vimentin; structural ge 69.9 15 0.00052 23.1 5.8 35 46-80 20-54 (119)
88 1jcd_A Major outer membrane li 69.4 12 0.00041 20.8 4.6 26 54-79 5-30 (52)
89 3m9b_A Proteasome-associated A 68.9 8.2 0.00028 27.9 4.8 23 51-73 73-95 (251)
90 3v86_A De novo design helix; c 68.7 8.5 0.00029 18.6 4.1 22 58-79 5-26 (27)
91 1s1c_X RHO-associated, coiled- 68.7 11 0.00037 22.4 4.6 31 50-80 3-33 (71)
92 3tq2_A KE1; parallel three hel 68.6 10 0.00034 19.4 5.3 34 48-81 3-36 (36)
93 3nmd_A CGMP dependent protein 68.2 16 0.00056 21.7 6.2 38 42-79 29-66 (72)
94 1nkp_B MAX protein, MYC proto- 67.8 9.7 0.00033 22.3 4.3 26 56-81 50-75 (83)
95 1wlq_A Geminin; coiled-coil; 2 67.6 4.7 0.00016 24.7 2.9 23 51-73 43-65 (83)
96 1zxa_A CGMP-dependent protein 67.6 12 0.00042 21.9 4.6 34 43-76 22-55 (67)
97 2wg5_A General control protein 67.4 6.2 0.00021 24.6 3.5 26 55-80 9-34 (109)
98 2akf_A Coronin-1A; coiled coil 67.0 11 0.00036 19.0 3.8 28 50-77 3-30 (32)
99 3he4_A Synzip6; heterodimeric 66.9 14 0.00049 20.5 5.0 33 48-80 19-51 (56)
100 3efg_A Protein SLYX homolog; x 66.8 17 0.00059 21.5 5.8 21 46-66 14-34 (78)
101 2dfs_A Myosin-5A; myosin-V, in 65.7 12 0.00041 31.7 5.9 33 47-79 1017-1049(1080)
102 3i00_A HIP-I, huntingtin-inter 65.6 15 0.0005 23.6 5.1 27 42-68 36-62 (120)
103 2zqm_A Prefoldin beta subunit 64.8 20 0.00069 21.5 6.1 29 50-78 81-109 (117)
104 1dip_A Delta-sleep-inducing pe 64.6 10 0.00035 22.9 3.9 29 47-75 16-44 (78)
105 1a93_B MAX protein, coiled coi 63.9 13 0.00045 19.1 4.0 24 49-72 10-33 (34)
106 3cvf_A Homer-3, homer protein 63.9 5.9 0.0002 23.9 2.8 22 55-76 15-36 (79)
107 1uix_A RHO-associated kinase; 63.8 14 0.00049 21.9 4.4 30 51-80 2-31 (71)
108 1wt6_A Myotonin-protein kinase 63.1 23 0.00078 21.5 8.1 37 45-81 37-73 (81)
109 1nkp_A C-MYC, MYC proto-oncoge 62.7 13 0.00044 22.3 4.2 22 51-72 64-85 (88)
110 4ati_A MITF, microphthalmia-as 62.5 5.9 0.0002 25.1 2.7 16 44-59 72-87 (118)
111 3w03_C DNA repair protein XRCC 61.7 18 0.00063 24.9 5.3 33 46-78 145-177 (184)
112 3hnw_A Uncharacterized protein 61.7 24 0.00082 22.9 5.7 14 62-75 112-125 (138)
113 2wvr_A Geminin; DNA replicatio 61.4 18 0.00063 25.5 5.3 30 49-78 118-147 (209)
114 1fxk_A Prefoldin; archaeal pro 61.0 23 0.0008 21.0 6.1 27 51-77 77-103 (107)
115 3kin_B Kinesin heavy chain; mo 60.2 23 0.0008 22.2 5.3 31 50-80 86-116 (117)
116 2pnv_A Small conductance calci 59.3 19 0.00064 19.3 5.1 33 47-79 10-42 (43)
117 3ghg_A Fibrinogen alpha chain; 58.6 21 0.00072 28.6 5.7 44 37-80 101-144 (562)
118 2zqm_A Prefoldin beta subunit 57.2 29 0.00099 20.8 5.9 37 45-81 69-105 (117)
119 3w03_C DNA repair protein XRCC 57.0 31 0.001 23.8 5.8 31 46-76 152-182 (184)
120 3hnw_A Uncharacterized protein 56.6 29 0.001 22.5 5.4 12 48-59 77-88 (138)
121 4emc_A Monopolin complex subun 56.3 28 0.00096 24.2 5.5 15 56-70 23-37 (190)
122 2wt7_A Proto-oncogene protein 56.2 24 0.00084 19.7 5.6 29 48-76 32-60 (63)
123 3swk_A Vimentin; cytoskeleton, 55.6 26 0.0009 20.9 4.7 33 48-80 2-34 (86)
124 3oja_B Anopheles plasmodium-re 54.7 62 0.0021 24.3 7.7 15 65-79 563-577 (597)
125 2zvf_A Alanyl-tRNA synthetase; 54.1 21 0.00073 22.9 4.4 29 50-78 29-57 (171)
126 3o0z_A RHO-associated protein 53.9 49 0.0017 22.5 7.0 33 39-71 83-115 (168)
127 1avy_A Fibritin, gpwac M; bact 53.8 33 0.0011 20.4 5.5 35 47-81 9-43 (74)
128 1nlw_A MAD protein, MAX dimeri 53.1 25 0.00086 20.7 4.3 27 55-81 49-75 (80)
129 1fxk_A Prefoldin; archaeal pro 52.4 34 0.0012 20.2 5.6 37 45-81 64-100 (107)
130 4emc_A Monopolin complex subun 52.3 13 0.00045 25.9 3.3 32 48-79 22-53 (190)
131 3mq7_A Bone marrow stromal ant 50.8 48 0.0016 21.5 6.4 30 48-77 73-102 (121)
132 3mq9_A Bone marrow stromal ant 50.3 36 0.0012 25.0 5.7 27 54-80 444-470 (471)
133 2gkw_A TNF receptor-associated 50.2 42 0.0014 22.1 5.6 34 48-81 2-35 (192)
134 2wg5_A General control protein 50.1 20 0.0007 22.2 3.7 28 47-74 8-35 (109)
135 2fxo_A Myosin heavy chain, car 49.9 46 0.0016 21.0 5.8 34 47-80 84-117 (129)
136 3oja_B Anopheles plasmodium-re 49.8 79 0.0027 23.7 7.7 31 49-79 540-570 (597)
137 2xdj_A Uncharacterized protein 49.0 41 0.0014 20.1 5.8 25 48-72 29-53 (83)
138 3mq9_A Bone marrow stromal ant 48.8 45 0.0015 24.5 6.0 27 47-73 444-470 (471)
139 2ve7_A Kinetochore protein HEC 47.2 48 0.0016 24.0 5.8 26 54-79 186-211 (315)
140 1fxk_C Protein (prefoldin); ar 47.2 48 0.0017 20.5 6.0 46 31-79 83-128 (133)
141 4e61_A Protein BIM1; EB1-like 45.3 49 0.0017 20.9 4.9 20 59-78 17-36 (106)
142 3mq7_A Bone marrow stromal ant 45.0 46 0.0016 21.6 4.8 28 53-80 71-98 (121)
143 3bas_A Myosin heavy chain, str 44.9 47 0.0016 19.7 6.2 29 48-76 58-86 (89)
144 1ik9_A DNA repair protein XRCC 43.7 54 0.0018 22.7 5.4 29 50-78 136-164 (213)
145 4b4t_K 26S protease regulatory 43.7 43 0.0015 25.3 5.3 29 48-76 51-79 (428)
146 3vmx_A Voltage-gated hydrogen 43.5 40 0.0014 18.5 5.8 34 45-78 10-43 (48)
147 1hwt_C Protein (heme activator 43.0 10 0.00036 21.4 1.4 22 44-65 56-77 (81)
148 2wvr_A Geminin; DNA replicatio 42.3 72 0.0025 22.4 5.8 30 45-74 121-150 (209)
149 1g6u_A Domain swapped dimer; d 42.2 40 0.0014 18.1 4.5 26 55-80 22-47 (48)
150 3coq_A Regulatory protein GAL4 41.7 34 0.0012 19.3 3.6 22 45-66 44-65 (89)
151 3a2a_A Voltage-gated hydrogen 41.5 48 0.0016 18.8 5.8 33 46-78 18-50 (58)
152 1l8d_A DNA double-strand break 41.4 56 0.0019 19.5 5.5 24 52-75 77-100 (112)
153 3q0x_A Centriole protein; cent 41.1 79 0.0027 22.3 6.0 35 46-80 178-212 (228)
154 3viq_B Mating-type switching p 41.0 50 0.0017 20.1 4.3 25 50-74 5-29 (85)
155 1wlq_A Geminin; coiled-coil; 2 39.0 64 0.0022 19.6 4.6 23 45-67 44-66 (83)
156 4ani_A Protein GRPE; chaperone 38.8 74 0.0025 22.1 5.5 33 47-79 60-92 (213)
157 3qh9_A Liprin-beta-2; coiled-c 38.7 65 0.0022 19.5 5.5 20 57-76 44-63 (81)
158 1ic2_A Tropomyosin alpha chain 38.6 57 0.002 18.9 5.4 11 58-68 46-56 (81)
159 3o0z_A RHO-associated protein 38.6 74 0.0025 21.6 5.3 29 49-77 51-79 (168)
160 3rrk_A V-type ATPase 116 kDa s 38.6 80 0.0027 22.4 5.8 34 46-79 99-135 (357)
161 3swy_A Cyclic nucleotide-gated 38.1 49 0.0017 17.9 5.6 30 46-75 5-34 (46)
162 3q4f_C DNA repair protein XRCC 37.8 89 0.003 21.6 5.7 31 46-76 154-184 (186)
163 1go4_E MAD1 (mitotic arrest de 37.3 52 0.0018 20.5 4.1 26 55-80 14-39 (100)
164 4abm_A Charged multivesicular 37.1 64 0.0022 19.0 5.5 24 30-53 40-63 (79)
165 1pyi_A Protein (pyrimidine pat 36.3 35 0.0012 19.7 3.1 20 45-64 47-66 (96)
166 1lwu_C Fibrinogen gamma chain; 36.2 78 0.0027 23.3 5.5 28 52-79 25-52 (323)
167 3swf_A CGMP-gated cation chann 36.2 68 0.0023 19.0 5.6 23 47-69 8-30 (74)
168 2w83_C C-JUN-amino-terminal ki 36.0 71 0.0024 19.1 5.3 28 50-77 34-61 (77)
169 2ocy_A RAB guanine nucleotide 35.7 90 0.0031 20.8 5.3 27 54-80 116-142 (154)
170 1ses_A Seryl-tRNA synthetase; 35.1 73 0.0025 23.9 5.3 50 29-79 48-97 (421)
171 1lwu_C Fibrinogen gamma chain; 35.0 1.1E+02 0.0038 22.5 6.2 29 46-74 26-54 (323)
172 3m91_A Proteasome-associated A 33.4 62 0.0021 17.7 5.9 35 46-80 16-50 (51)
173 3iyn_Q Protein IX, PIX, hexon- 32.7 64 0.0022 21.2 4.1 35 46-80 98-132 (140)
174 1aa0_A Fibritin, gpwac E; bact 32.2 99 0.0034 19.7 5.6 35 47-81 51-85 (113)
175 4h22_A Leucine-rich repeat fli 32.1 96 0.0033 19.5 6.0 25 45-69 36-60 (103)
176 3mud_A DNA repair protein XRCC 32.0 1.1E+02 0.0039 20.8 5.4 35 37-71 133-167 (175)
177 3q4f_C DNA repair protein XRCC 31.1 62 0.0021 22.4 4.0 24 46-69 161-184 (186)
178 2ve7_C Kinetochore protein NUF 31.0 38 0.0013 23.9 3.0 28 50-77 152-179 (250)
179 3oja_A Leucine-rich immune mol 30.9 1.6E+02 0.0054 21.6 6.6 38 42-79 431-468 (487)
180 1fzc_C Fibrin; blood coagulati 30.7 56 0.0019 24.1 3.9 28 52-79 17-44 (319)
181 2j5u_A MREC protein; bacterial 30.6 14 0.00047 26.1 0.6 12 55-66 45-56 (255)
182 2lw1_A ABC transporter ATP-bin 30.4 78 0.0027 18.5 4.0 22 48-69 24-45 (89)
183 2zxx_A Geminin; coiled-coil, c 29.9 92 0.0031 18.6 7.2 28 50-77 38-65 (79)
184 1d66_A Protein (GAL4); protein 29.8 15 0.00052 19.7 0.6 15 45-59 51-65 (66)
185 2dq0_A Seryl-tRNA synthetase; 29.7 1.2E+02 0.0043 22.9 5.9 51 29-79 51-102 (455)
186 3iyn_Q Protein IX, PIX, hexon- 29.6 78 0.0027 20.8 4.1 30 52-81 97-126 (140)
187 4g2k_A General control protein 29.2 1.1E+02 0.0036 19.9 4.7 7 49-55 45-51 (125)
188 2oto_A M protein; helical coil 28.9 1.2E+02 0.004 19.5 5.3 29 49-77 53-81 (155)
189 1fxk_C Protein (prefoldin); ar 28.7 1E+02 0.0036 18.9 5.5 26 48-73 104-129 (133)
190 2fxo_A Myosin heavy chain, car 28.6 1.1E+02 0.0038 19.1 5.8 31 47-77 91-121 (129)
191 3he4_B Synzip5; heterodimeric 27.8 74 0.0025 16.9 5.9 22 45-66 9-30 (46)
192 2zdi_C Prefoldin subunit alpha 27.7 1.2E+02 0.0041 19.2 5.5 47 30-79 92-138 (151)
193 3qne_A Seryl-tRNA synthetase, 27.3 1.4E+02 0.0046 23.2 5.8 51 29-79 53-104 (485)
194 1wle_A Seryl-tRNA synthetase; 27.0 2.2E+02 0.0075 22.0 8.3 50 29-78 90-148 (501)
195 3azd_A Short alpha-tropomyosin 27.0 19 0.00065 18.5 0.6 27 48-74 6-32 (37)
196 1am9_A Srebp-1A, protein (ster 26.7 98 0.0034 17.9 8.5 24 57-80 54-77 (82)
197 1fzc_C Fibrin; blood coagulati 25.7 27 0.00092 25.8 1.5 27 48-74 20-46 (319)
198 2yko_A LINE-1 ORF1P; RNA-bindi 25.6 1.8E+02 0.0062 20.6 5.8 31 46-76 13-43 (233)
199 1buu_A Protein (mannose-bindin 25.5 1.3E+02 0.0044 18.8 4.7 24 51-74 21-44 (168)
200 2v4h_A NF-kappa-B essential mo 25.4 1.3E+02 0.0046 19.0 8.4 50 4-56 5-55 (110)
201 2ocy_A RAB guanine nucleotide 25.1 1.5E+02 0.0052 19.7 5.0 38 38-75 107-144 (154)
202 2ve7_C Kinetochore protein NUF 25.0 65 0.0022 22.6 3.3 43 39-81 134-176 (250)
203 2dfs_A Myosin-5A; myosin-V, in 24.8 1.2E+02 0.0042 25.6 5.4 6 50-55 988-993 (1080)
204 4ghu_A TNF receptor-associated 24.5 1.6E+02 0.0054 19.5 5.5 31 50-80 4-34 (198)
205 2v66_B Nuclear distribution pr 24.4 1.2E+02 0.0042 19.1 4.2 18 58-75 40-57 (111)
206 3efg_A Protein SLYX homolog; x 24.2 1.1E+02 0.0039 17.8 5.8 32 48-79 23-54 (78)
207 1ca9_A TRAF2, protein (TNF rec 23.1 1.4E+02 0.0046 19.3 4.5 31 49-79 6-36 (192)
208 3i5c_A Fusion of general contr 23.1 1.1E+02 0.0037 19.0 3.9 26 48-73 2-27 (206)
209 1rtm_1 Mannose-binding protein 23.0 1.3E+02 0.0045 18.1 4.7 22 53-74 4-25 (149)
210 1ef1_C Moesin; membrane, FERM 22.7 67 0.0023 19.6 2.6 18 63-80 29-46 (90)
211 3tnu_B Keratin, type II cytosk 22.2 1.5E+02 0.0051 18.4 6.0 16 50-65 47-62 (129)
212 1t7s_A BAG-1 cochaperone; stru 22.2 1.1E+02 0.0036 20.2 3.7 35 37-75 96-130 (137)
213 4b4t_J 26S protease regulatory 22.0 1.4E+02 0.0049 22.4 4.9 29 52-80 38-66 (405)
214 3u06_A Protein claret segregat 21.7 1.8E+02 0.0062 21.8 5.4 15 57-71 21-35 (412)
215 1deq_A Fibrinogen (alpha chain 21.6 1.9E+02 0.0065 22.1 5.5 33 44-76 111-143 (390)
216 2yko_A LINE-1 ORF1P; RNA-bindi 21.5 2.2E+02 0.0075 20.2 5.5 34 47-80 7-40 (233)
217 3na7_A HP0958; flagellar bioge 21.2 2E+02 0.0069 19.7 5.3 10 48-57 34-43 (256)
218 1uuj_A Platelet-activating fac 21.2 46 0.0016 20.3 1.6 23 48-70 60-82 (88)
219 1j1d_B Troponin T, TNT; THIN f 21.1 1.6E+02 0.0054 18.3 5.3 34 46-79 49-89 (106)
220 1ytz_T Troponin T; muscle, THI 20.7 1.6E+02 0.0056 18.3 5.6 32 48-79 58-89 (107)
221 3rrk_A V-type ATPase 116 kDa s 20.2 2.3E+02 0.0079 19.9 5.5 33 48-80 94-126 (357)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.72 E-value=3.9e-17 Score=96.52 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=55.1
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|++++++|||+||++||.||++|+.+||.++..|+.+|..|..++..|+.++.+|++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999986
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.70 E-value=9.4e-17 Score=95.63 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=54.8
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|+.+|+++||+||++||.||++|+.+|+.+|..|+.+|..|..++..|+.++..|+.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999874
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.68 E-value=1.5e-16 Score=94.29 Aligned_cols=57 Identities=30% Similarity=0.262 Sum_probs=54.1
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|.+++..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|+.++..|++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999986
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.65 E-value=2e-16 Score=92.41 Aligned_cols=54 Identities=65% Similarity=0.831 Sum_probs=50.8
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|+.+|+++||+||+.||.||+.|+.+||.+|..|+.+|..|..++..|+.+|++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999999999999999999999999987754
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.56 E-value=8.8e-15 Score=87.41 Aligned_cols=56 Identities=29% Similarity=0.309 Sum_probs=46.9
Q ss_pred ccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 23 LPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 23 ~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..+.+++..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|+.++++
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667889999999999999999999999999999999999999999998864
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.52 E-value=4.4e-14 Score=84.17 Aligned_cols=57 Identities=25% Similarity=0.138 Sum_probs=49.9
Q ss_pred chhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 25 KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
++.+++.+|++||.+||.||++++.+|+.++..|+.+|..|..++..|+.++..|++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999975
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=99.27 E-value=3.4e-11 Score=74.59 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=57.2
Q ss_pred CCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 19 PEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 19 ~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.|.++.....+..||.+||++||.+++.....++.++..|+.+|..|..+|..|..++..|+.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667789999999999999999999999999999999999999999999999999874
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.23 E-value=6e-11 Score=74.83 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=57.3
Q ss_pred CCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 19 PEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 19 ~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.|.++.....+..||.+||++||.+++....+++.++..|+.+|..|..+|..|+.++..|+.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677889999999999999999999999999999999999999999999999998864
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.99 E-value=1.8e-09 Score=65.67 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=45.5
Q ss_pred hchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 27 SVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 27 ~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.+|...||.|++.+|.||..||.+||.+|..|+..+..|..++..|+..+..|..
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999987777666666666666665543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.72 E-value=4.5e-10 Score=73.23 Aligned_cols=63 Identities=22% Similarity=0.050 Sum_probs=48.1
Q ss_pred CCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 18 GPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 18 ~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..+....|..||..|||.||+.||.||.+.+.+||..+..|..+...|..++..|+.++..++
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555688999999999999999999999999998887666665556665555555554444
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.69 E-value=1.1e-07 Score=60.23 Aligned_cols=61 Identities=21% Similarity=0.076 Sum_probs=51.5
Q ss_pred CCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 21 DSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 21 e~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
-...|..||-.|||.+|+.||.||.+-...||..+..|..+-..|..++..+..+...+|+
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778899999999999999999999999999988888888888888777777766654
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=97.80 E-value=5.1e-06 Score=52.65 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=25.0
Q ss_pred cchhchhHHhHHHHHHHHHHhHHHHHHHH
Q psy1989 24 PKISVPGSVWMEAAKECRRKKKEYIKCLE 52 (82)
Q Consensus 24 ~kr~rR~~kNR~aA~~sR~RKKe~i~~LE 52 (82)
.+..||..|||+||+.||+||.+.+..|+
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999887765
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.59 E-value=0.00021 Score=39.37 Aligned_cols=37 Identities=35% Similarity=0.417 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|.|+.+||.++..|+..|.+|...+..|+++-.-|.|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6899999999999999999999999999998776654
No 14
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=97.00 E-value=0.0014 Score=34.43 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+++..||++|+.|-.+|..|..++..|++.+.
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35789999999999999999999999998764
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=96.78 E-value=0.0037 Score=33.22 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+|..||++|+.|-.+|..|..++..|+..+..-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999987653
No 16
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=96.75 E-value=0.0019 Score=33.83 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+|..||++|+.|-.+|..|..++..|++.+.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3678999999999999999999999998754
No 17
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=96.70 E-value=0.0035 Score=32.92 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+++..||++|+.|-.+|..|..++..|+..+.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 35789999999999999999999999998763
No 18
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=96.67 E-value=3e-05 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=20.7
Q ss_pred cchhchhHHhHHHHHHHHHHhHHH
Q psy1989 24 PKISVPGSVWMEAAKECRRKKKEY 47 (82)
Q Consensus 24 ~kr~rR~~kNR~aA~~sR~RKKe~ 47 (82)
.+..||.-|||+||+.||+||.+.
T Consensus 65 IrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 65 VRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356789999999999999999764
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=96.60 E-value=0.0033 Score=33.42 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.|..||.+|+.|-.+|..|..++..|+..+..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999988753
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=96.49 E-value=0.0085 Score=31.27 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+..||++|+.|-.+|..|..++..|++.+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 689999999999999999999999998763
No 21
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=96.46 E-value=0.022 Score=33.14 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=34.2
Q ss_pred hchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 27 SVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 27 ~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
++...|||+|+++||.|=+..++-...-...-.+||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 3567899999999999999888877776667777888776544
No 22
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=96.25 E-value=0.014 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
|.+||++|+.|-.+|..|..++..|+..+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 68999999999999999999999998875
No 23
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=96.24 E-value=0.0057 Score=32.16 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+++..||++|+.|-.+|..|..++..|+..+.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999988653
No 24
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=96.20 E-value=0.0098 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.+..||++|+.|-.+|..|..++..|++.+-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999998764
No 25
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=96.10 E-value=0.0085 Score=31.47 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+|..||++|+.|-.+|..|..++..|++.+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999988653
No 26
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=95.10 E-value=0.053 Score=32.51 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-+||..|+..+..|+.+...|..++..|+..+..|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999988764
No 27
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=94.81 E-value=0.097 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.+.+||++|+.|-.++..|..++..|++.+-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999987653
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=94.65 E-value=0.11 Score=31.33 Aligned_cols=36 Identities=28% Similarity=0.129 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-.+||..|+.....|..++..|..++..|+..+.+|
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 349999999999999999999999999999988765
No 29
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=94.03 E-value=0.16 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
--+||..|+.....|..+...|..+...|+.++.+|.
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3489999999999999888899999999999888875
No 30
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=93.88 E-value=0.11 Score=25.66 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 56 AILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..|+.+|..|.+.+..|++.++.|||
T Consensus 3 dalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHhccHHHHHHHHHHHHHHHHhcC
Confidence 35888999999999999999999986
No 31
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=92.14 E-value=0.34 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
-+||..|+..+..|+.++..|...++..+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47888888888888888888877776654
No 32
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=92.00 E-value=0.0012 Score=41.61 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.0
Q ss_pred chhchhHHhHHHHHHHHHHhHH
Q psy1989 25 KISVPGSVWMEAAKECRRKKKE 46 (82)
Q Consensus 25 kr~rR~~kNR~aA~~sR~RKKe 46 (82)
+..||.-|||+||+.||+||.+
T Consensus 66 rdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 66 RDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHhhhhHHHHHHcchhhcc
Confidence 4567899999999999999865
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.96 E-value=0.28 Score=29.18 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..+..|+.....|..+|..|+.++..|..++..|+
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35788899899999999999999999999988764
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.90 E-value=0.43 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhC
Q psy1989 47 YIKCLENRVAILENQNKALIDELKS-------LKELYCQQEME 82 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~-------L~~~~~~lk~~ 82 (82)
-|.-|.-+++.|..+|..|..++.. |..+..+|++|
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555666677777776666666 55566666653
No 35
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.35 E-value=0.84 Score=25.02 Aligned_cols=29 Identities=41% Similarity=0.471 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
.+..||..|..|+++|..|+...-.-+..
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdl 32 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDL 32 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHH
Confidence 46789999999999999988765443333
No 36
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=90.00 E-value=0.44 Score=29.01 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALID 67 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~ 67 (82)
|+.|.+|+.++.+|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888777764
No 37
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=89.77 E-value=0.45 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+|+..+...++.|..+|..|..++..|+..
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888889999999999998887764
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.66 E-value=0.78 Score=25.74 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 53 NRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..|+.|..+|..|+.++..|.+++..|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665554
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=88.74 E-value=2.8 Score=25.71 Aligned_cols=65 Identities=17% Similarity=0.069 Sum_probs=43.4
Q ss_pred CCCCCCCCccc-hhch---hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 15 IQVGPEDSLPK-ISVP---GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 15 ~~~~~ee~~~k-r~rR---~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+.+..++.-+. |.+. -.|-|.++..--.--...+..|+.+-..|..+...|..++..|+..+.++
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33444444444 3332 33455544444455567789999999999999999999999999988764
No 40
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=86.99 E-value=2.4 Score=22.97 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
...+||.++..|+.||..|++=+
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 45667777777777776666533
No 41
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.79 E-value=2.2 Score=23.96 Aligned_cols=35 Identities=0% Similarity=-0.106 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.|..|..+|..|..+-..|..++..|+..+..-|.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~ 39 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKD 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777766554
No 42
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=85.97 E-value=1.1 Score=22.01 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+..|...|..|++++..|.=+++.|.|
T Consensus 2 irrlkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 345677788888888888877777654
No 43
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=85.96 E-value=1.6 Score=21.83 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
.|-.-+..|+.+|+.|+..+..|-..|
T Consensus 3 qlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345557789999999999998876654
No 44
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=85.90 E-value=3.6 Score=23.95 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCCCCCCccchhchhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 15 IQVGPEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 15 ~~~~~ee~~~kr~rR~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|.+..|...-=.+---.||-.+|+ |.+|.+|-.-|..|..++..++..+..|
T Consensus 2 ~~dlsDgpit~qeylevK~ALaaS-------------eAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 2 PLGSSDGAVTLQEYLELKKALATS-------------EAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp CCC--CCSSCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcchHHHHHHHHHHHHhh-------------HHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 334444444333444567878887 4455555555555555544444444433
No 45
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.33 E-value=2.6 Score=25.37 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=42.9
Q ss_pred CCCCCCCCccc-hhch---hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 15 IQVGPEDSLPK-ISVP---GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 15 ~~~~~ee~~~k-r~rR---~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+.+..++.-+. |.+. -.|-|..+..--.--...+..|+.+-..|..+...|..++..|+..+.+
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 3332 3455555555445566778999999999999999999999999887654
No 46
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.96 E-value=2.5 Score=21.36 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+..|..+...|+.++..|+=+++.|||
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566666666777777767666665
No 47
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.61 E-value=3.3 Score=23.11 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+.+|..++..|...|..|..-+...+.++..|+.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667766776666666666655555543
No 48
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=84.58 E-value=2.7 Score=21.28 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+..||..|.+-+.+|-.|.+++.+|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 457888899999999888888877754
No 49
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.51 E-value=1.4 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+|+..-..|..+...|.++|..|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45788889999999999999998886
No 50
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=83.54 E-value=1.9 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.+|+..-..|......|.++|..|+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467888888888888888888888876
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.30 E-value=4.1 Score=24.95 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
-.||.+|-..+..+..++..|..++..|...+..++.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888899999888888888887764
No 52
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=83.29 E-value=1.4 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
..|+..|+.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999888887776654
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.11 E-value=4 Score=22.85 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
..+..|+..-..|..+...|..++..|+..+
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777777888877777665
No 54
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.92 E-value=2.2 Score=22.16 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.+|+..-..|..+.+.|..+|..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467899999999999999999998886
No 55
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.74 E-value=2.2 Score=22.10 Aligned_cols=27 Identities=11% Similarity=0.211 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.+|+..-..|..+...|.++|..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467899999999999999999999886
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.46 E-value=2.5 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
..|..|+.+|+.|..+|..|..+...-+
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888888888888888888775443
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.32 E-value=3 Score=23.27 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
++.|..+...|..++..|..+++.|+..+.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777777777777777776654
No 58
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=81.96 E-value=4 Score=25.02 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-...|...+..|..++..|+.++..|++.+.+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888776654
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=81.64 E-value=4.5 Score=25.50 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+-+..|..+++.|+.+|..|+.++..|..++.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999888765
No 60
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.09 E-value=2.5 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.+|+..-..|..+...|.++|..|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 457889999999999999999999886
No 61
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=80.76 E-value=1.6 Score=31.68 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQN-------KALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN-------~~L~~q~~~L~~~~~~lk 80 (82)
+..|+.++..|...| +.++.++..|++++..|+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555554444 455555555555555443
No 62
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=80.32 E-value=4.6 Score=22.78 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+.|-.+|+.|..||.-|+.+++.=-.++..|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 4677788999999999998877655555444
No 63
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.20 E-value=3.1 Score=21.41 Aligned_cols=26 Identities=4% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+|+..-..|..+...|.++|..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56788888899999999999998886
No 64
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=79.82 E-value=4.5 Score=23.11 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+..|+.+-..|..++..|..++..|+++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888777653
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.65 E-value=6.4 Score=22.34 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..+..|+.+-..|..+...|..++..|++.+.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888888877764
No 66
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.29 E-value=4.3 Score=22.61 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+..|+.+...|..++..|..++..|.++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988764
No 67
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=78.88 E-value=2.2 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+|+..-..|..+...|.++|..|+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777777665
No 68
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=78.62 E-value=2.4 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALID 67 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~ 67 (82)
+||..|+..+..|+.++..|..
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555554443
No 69
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=77.99 E-value=1.5 Score=28.30 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELK 70 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~ 70 (82)
-+++|..++..|+-||+.|+.++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999998885
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.92 E-value=3.6 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
|.+.|..||.++...+.+...|+.++..++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455777777777777777777777666543
No 71
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=77.46 E-value=8.5 Score=23.47 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=23.6
Q ss_pred hHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCL----------ENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 44 KKe~i~~L----------E~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
--+||..| +.+...|+..|..|...++.|..+
T Consensus 37 svdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 35777777 666677888888888888877654
No 72
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=76.23 E-value=4.3 Score=21.02 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.+|+..-..|......|.++|..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 457889989999999999999998886
No 73
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=74.72 E-value=3.3 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy1989 61 QNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 61 eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+|..|..++..-.++++.|++
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~ 28 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555555554
No 74
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=74.67 E-value=5.6 Score=20.43 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+|+..-..|......|.++|..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888888888888888888775
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=74.60 E-value=2.6 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy1989 61 QNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 61 eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+|..|..++..|+.++..+|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555543
No 76
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.90 E-value=7.1 Score=24.79 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALID 67 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~ 67 (82)
+||.+++.|+.+|..|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666655555
No 77
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.45 E-value=7.3 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+..++..++..|..|..+|..|+..+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 78
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=73.31 E-value=3.5 Score=21.67 Aligned_cols=19 Identities=47% Similarity=0.726 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1989 53 NRVAILENQNKALIDELKS 71 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~ 71 (82)
++|..|+.+|..|..++..
T Consensus 20 dkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567888888888877643
No 79
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=72.96 E-value=5.4 Score=24.65 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q psy1989 39 ECRRKKKEYIKCLEN----RVAILENQNKALIDELKSLKELYCQQEME 82 (82)
Q Consensus 39 ~sR~RKKe~i~~LE~----~v~~Le~eN~~L~~q~~~L~~~~~~lk~~ 82 (82)
+-+-|-+.|...=-. ....|+.++..|..++..|+.+...+..|
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666543322 23578899999999999998888877643
No 80
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.77 E-value=9.4 Score=23.28 Aligned_cols=22 Identities=50% Similarity=0.724 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 53 NRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
++|..||.+|+.|..++..++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888888888777664
No 81
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.59 E-value=6 Score=20.44 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++.+|+..-.+|......|.++|..|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456888888889999999999988876
No 82
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=71.68 E-value=3.4 Score=25.08 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALID 67 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~ 67 (82)
.+...+..|..+|..|..
T Consensus 45 ~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 45 QKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444433
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.02 E-value=12 Score=25.83 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 40 CRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 40 sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+..--+++=..||..+..++..+..|...+..|..++..++
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777777777766654
No 84
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=70.89 E-value=2.7 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKAL 65 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L 65 (82)
..|+..||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888998888887665544
No 85
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=70.46 E-value=7.7 Score=21.74 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+..|+..-..|..+...|..++..|+..
T Consensus 31 v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554443
No 86
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=70.11 E-value=15 Score=22.16 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+-+|..++..|..+...|+-+++.+..++.++++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4667777888888888888888888887777654
No 87
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=69.90 E-value=15 Score=23.13 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.||.+|..++..+..+|..|..++..++..+..++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777766655443
No 88
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=69.42 E-value=12 Score=20.85 Aligned_cols=26 Identities=0% Similarity=-0.112 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
++..|..+-..|-.++..|...|..+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544443
No 89
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.95 E-value=8.2 Score=27.93 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
|......+..+...|+.+++.|+
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556666666666666654
No 90
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=68.69 E-value=8.5 Score=18.58 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy1989 58 LENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 58 Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|..+-.+|+-++..|+.+|..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444455555555555555544
No 91
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=68.66 E-value=11 Score=22.37 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|...+..|..|+..|..++..++.++..++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777766654
No 92
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=68.63 E-value=10 Score=19.43 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+..|.++|..|..+.-.|.-.+..|++.|..||.
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsalke 36 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSALKE 36 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4557777888888888888888888888888763
No 93
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.20 E-value=16 Score=21.67 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
++|-+-+...+..+..|+.+-...-.++..|+.++-.+
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566688888889999999999999999999887554
No 94
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.79 E-value=9.7 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 56 AILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
..|..++..|..++..|+.+...|.+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777666654
No 95
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=67.62 E-value=4.7 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
|...++.+..+...|+.++..|+
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 96
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=67.59 E-value=12 Score=21.86 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 43 KKKEYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 43 RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
.|.+.|.+||..+..=..++..|+.++..++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4668888898888888888888888888776654
No 97
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=67.37 E-value=6.2 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+|+.+...|..++..+++++..|.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666667777777777666654
No 98
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=67.01 E-value=11 Score=19.05 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.||+.+..|..--+.|...+..|..-|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777788888777788888877776664
No 99
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=66.92 E-value=14 Score=20.51 Aligned_cols=33 Identities=36% Similarity=0.350 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
-..||.-|..|+..|..|...+..|..-++.|.
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999988887764
No 100
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.79 E-value=17 Score=21.48 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALI 66 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~ 66 (82)
++|..||.+++..+.-...|-
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn 34 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELS 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777765444333333
No 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.75 E-value=12 Score=31.69 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
..++|++++..|+.+|..|.+|+..|...+...
T Consensus 1017 ~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777788888888888888887655444
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=65.59 E-value=15 Score=23.61 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDE 68 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q 68 (82)
.--..||..|..+|..|+.+...=+.+
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444578888888888888777665443
No 103
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.84 E-value=20 Score=21.54 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.++..+..|+..-..+..++..++..+..
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555555555443
No 104
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=64.64 E-value=10 Score=22.92 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
-++.|.+++..|+..|..|..++.-|+..
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999888764
No 105
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.92 E-value=13 Score=19.12 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
......+.+|+.+|..|..|+..|
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344556777777777777776544
No 106
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.89 E-value=5.9 Score=23.95 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 55 VAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+..++..|..|..+|..|+..+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 107
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=63.77 E-value=14 Score=21.88 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|...+..|..|+..|..++..++.++..++
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555443
No 108
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=63.07 E-value=23 Score=21.53 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+.-...++.++...+..|..|..++..|+.++..|..
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344456667778899999999999999999887654
No 109
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=62.74 E-value=13 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L 72 (82)
|+..+..|..+|..|..++..|
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555555544
No 110
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=62.47 E-value=5.9 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILE 59 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le 59 (82)
--+||..|...+..|.
T Consensus 72 aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 72 SVDYIRKLQREQQRAK 87 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777766665544
No 111
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=61.71 E-value=18 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+++..+=+.+..|..+|..|..+++.|+.+...
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666655543
No 112
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.66 E-value=24 Score=22.92 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy1989 62 NKALIDELKSLKEL 75 (82)
Q Consensus 62 N~~L~~q~~~L~~~ 75 (82)
+..|..++..|+.+
T Consensus 112 ~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 112 IKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 113
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.38 E-value=18 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
..|...+..|..++..|+.++..|++.+.+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443
No 114
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.04 E-value=23 Score=20.96 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
++..++.|+..-..+..++..++..+.
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554443
No 115
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=60.21 E-value=23 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+..+++....++..|+..+..|+.++..++
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455666677778888888888777654
No 116
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=59.33 E-value=19 Score=19.31 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-+.+|..+-+.|+..-..|...+..|...+..|
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355666666677777777777777777766543
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.55 E-value=21 Score=28.59 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 37 AKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 37 A~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+......+.+|..+|+.++..|+.+...-..++..|+.-|..+.
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888889999998888877766677877777776553
No 118
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.17 E-value=29 Score=20.82 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.+.+..|+.+++.++.....|..++..+...+..++.
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777888888888888888888777776653
No 119
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=56.99 E-value=31 Score=23.76 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+.+..|..++..|..+|..|..+.....+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999998877765
No 120
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.55 E-value=29 Score=22.49 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILE 59 (82)
Q Consensus 48 i~~LE~~v~~Le 59 (82)
...|+..+..+.
T Consensus 77 ~~~L~~~l~~~~ 88 (138)
T 3hnw_A 77 ADSLSLDIENKD 88 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 121
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.31 E-value=28 Score=24.21 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy1989 56 AILENQNKALIDELK 70 (82)
Q Consensus 56 ~~Le~eN~~L~~q~~ 70 (82)
..|..||..|..+++
T Consensus 23 ~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 23 ANLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343333333333
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.19 E-value=24 Score=19.69 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+..|+..-..|..+...|..++..|+..+
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555444433
No 123
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=55.58 E-value=26 Score=20.90 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|.+|..++..+..+|..|..++..++..+..++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777776665543
No 124
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.73 E-value=62 Score=24.27 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHhh
Q psy1989 65 LIDELKSLKELYCQQ 79 (82)
Q Consensus 65 L~~q~~~L~~~~~~l 79 (82)
|.+++..+++++.+|
T Consensus 563 l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 563 LRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 125
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=54.14 E-value=21 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
++..++..|..+++.|..++..|+..+..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777766554
No 126
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.86 E-value=49 Score=22.47 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 39 ECRRKKKEYIKCLENRVAILENQNKALIDELKS 71 (82)
Q Consensus 39 ~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~ 71 (82)
..|..--+.+.+|+.++..|..+...++.....
T Consensus 83 ~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 83 RDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666555554444443333
No 127
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=53.76 E-value=33 Score=20.44 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.++.+|..+..+..+-..+...+..++..|+.|.|
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 35678888888888888888888888888888875
No 128
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.06 E-value=25 Score=20.67 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+..|..++..|..+...|+.+...|++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655543
No 129
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.41 E-value=34 Score=20.20 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
.+.+..|+.+.+.++.+...|..++..++..+..++.
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888877763
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.31 E-value=13 Score=25.89 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|..|..+...|..++.....+++.|+.++..+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444444444444443
No 131
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.79 E-value=48 Score=21.48 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+++|+.++..|..+.+....++..|+....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 555555555555555555555555554443
No 132
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.35 E-value=36 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+|+.||.+...|..+++.+.++|..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777664
No 133
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=50.23 E-value=42 Score=22.05 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+..||.++..++.....+..++..|...+..+.+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777777777777778777777766543
No 134
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=50.14 E-value=20 Score=22.15 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.+..|+.+...|..+...|+.+++.|+.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567888888889999999999988864
No 135
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.86 E-value=46 Score=20.96 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+.+|+.+++..+..|..|...-..|...+..|+
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554443
No 136
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.75 E-value=79 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+.++.++..++.....-+.++..++.+...+
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 137
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.96 E-value=41 Score=20.12 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSL 72 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L 72 (82)
+..|..+|..|.-.+..+..++..+
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444443333333333333
No 138
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=48.76 E-value=45 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
.|++||.++..|+.+.+.+..++..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555555443
No 139
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=47.24 E-value=48 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+++.|+.+|..|..+++.|..+...+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777776665443
No 140
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.20 E-value=48 Score=20.47 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 31 SVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 31 ~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+++..-|...=.+|. +.|+..+..|+..-..+..++..+...+.++
T Consensus 83 E~~~~eA~~~l~~r~---~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 83 KKNFEDAMESIKSQK---NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EEEHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444544444443 4556666666666667777777766666554
No 141
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=45.30 E-value=49 Score=20.90 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy1989 59 ENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 59 e~eN~~L~~q~~~L~~~~~~ 78 (82)
..+...|..++..|+..+..
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333
No 142
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.01 E-value=46 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 53 NRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.+|..|+-++..|..+++..-+++.+|.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777664
No 143
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.92 E-value=47 Score=19.72 Aligned_cols=29 Identities=38% Similarity=0.468 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+.+.|.++..|......|-.++..|...+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555443
No 144
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.73 E-value=54 Score=22.67 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
.|+.+...|..+|..|...+..|.+++..
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 145
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.73 E-value=43 Score=25.31 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+..|+..+..|..++..+..+...++.++
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~ 79 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKREL 79 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444444444444443
No 146
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=43.46 E-value=40 Score=18.50 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
|+-...|-.+|..|+..+..+.+++..|+..+.+
T Consensus 10 Ke~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 10 KQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4555667777888888888888888888776543
No 147
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=43.04 E-value=10 Score=21.37 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILENQNKAL 65 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L 65 (82)
...|+..|+.++..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888998888887655443
No 148
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.27 E-value=72 Score=22.45 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
...|..|+..+..|..+|..|+.=+..++.
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777666554444443
No 149
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=42.18 E-value=40 Score=18.10 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+..|+++.+.|...+..|+..++.||
T Consensus 22 laaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666666555543
No 150
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=41.66 E-value=34 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALI 66 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~ 66 (82)
..|+..|+.++..||.....|.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999999887766553
No 151
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.48 E-value=48 Score=18.82 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+--..|-.+|..|+..+....+++..|...+.+
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777888888888888888887776543
No 152
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.40 E-value=56 Score=19.51 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 52 ENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
...+..|..+...|..++..|...
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 153
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=41.12 E-value=79 Score=22.30 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..+..|+.++.....|+.++..++..-+...+++.
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999988888877764
No 154
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=41.02 E-value=50 Score=20.08 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.|+.+++.|+.+-..|..++..+.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 155
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.00 E-value=64 Score=19.56 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALID 67 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~ 67 (82)
..-+..++..+..|..+|..|..
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666655543
No 156
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=38.78 E-value=74 Score=22.15 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
-+..|+.++..|+.+...|..++..+++.+..+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~ 92 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENF 92 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666655544
No 157
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.66 E-value=65 Score=19.48 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELKSLKELY 76 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~ 76 (82)
+++..-+.=+.++..|+.++
T Consensus 44 QyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 44 QYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 33333333334444444443
No 158
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.62 E-value=57 Score=18.87 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy1989 58 LENQNKALIDE 68 (82)
Q Consensus 58 Le~eN~~L~~q 68 (82)
|...+..|..+
T Consensus 46 L~kKiq~lE~e 56 (81)
T 1ic2_A 46 LQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 159
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.59 E-value=74 Score=21.58 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.+|.+++..|+.....|..++..|+.++.
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666555555443
No 160
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=38.57 E-value=80 Score=22.40 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKEL---YCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~---~~~l 79 (82)
.++..+..++..|......|..++..|+.. +..|
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L 135 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL 135 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346777777777777777777777777777 5554
No 161
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=38.06 E-value=49 Score=17.88 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+.+..||..++.|......|..+...-+..
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444433
No 162
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.79 E-value=89 Score=21.60 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+++.-.=.++..|+.+|..|..+++.|..+.
T Consensus 154 ELi~~~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 154 ELICYCLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555556667777777777777777777654
No 163
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.30 E-value=52 Score=20.52 Aligned_cols=26 Identities=23% Similarity=0.086 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 55 VAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 55 v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
|..|..+..+|..+...|+.++..|.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444443
No 164
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=37.06 E-value=64 Score=18.96 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=17.5
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHH
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLEN 53 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~ 53 (82)
..+|+-+|-.|=+|||-|-..|+.
T Consensus 40 ~~knK~~Al~aLkrKK~~E~qL~q 63 (79)
T 4abm_A 40 GTKNKRAALQALKRKKRYEKQLAQ 63 (79)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHhHHHHHHHH
Confidence 367888888888888877555544
No 165
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=36.34 E-value=35 Score=19.67 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKA 64 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~ 64 (82)
+.|+..|+.++..|+.....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35888999999888765543
No 166
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.21 E-value=78 Score=23.34 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 52 ENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+..|+.....+...|+.|+..|.+|
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555444
No 167
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.17 E-value=68 Score=19.02 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
.+..||..+..|......|..+.
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy 30 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEY 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 168
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.02 E-value=71 Score=19.14 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
+|=.+|..|..++..|..++..++.-..
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666554443
No 169
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.74 E-value=90 Score=20.79 Aligned_cols=27 Identities=15% Similarity=-0.065 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 54 RVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 54 ~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
++..|+.+-..-..-+..|+.++..||
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555554
No 170
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.11 E-value=73 Score=23.90 Aligned_cols=50 Identities=16% Similarity=0.029 Sum_probs=29.0
Q ss_pred hhHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 29 PGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|.+|..-.. ++++-...|-.++..|..+.+.|..++..+.+++..+
T Consensus 48 ~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 48 QTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655543322 3344455666666666666667777666666666543
No 171
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.99 E-value=1.1e+02 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.-|..|+..+..++.....|..+|..|..
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554
No 172
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.43 E-value=62 Score=17.72 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
..+..|..+-..|..-...-+.++..|+++|..|-
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567778888888888999999999999988764
No 173
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=32.67 E-value=64 Score=21.23 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+.+..+=.+++.|..+...|-.++.+|.+++..+|
T Consensus 98 d~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~~ 132 (140)
T 3iyn_Q 98 DKLTALLAQLDSLTRELNVVSQQLLDLRQQVSALK 132 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555566666677777777777776655443
No 174
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=32.22 E-value=99 Score=19.68 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
-++.+|..+..+..+-..++..+..|+..|..|.|
T Consensus 51 sVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ 85 (113)
T 1aa0_A 51 SIKANETNIASVTQEVNTAKGNISSLQGDVQALQE 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccccchhhhheeecccccchhhhhhhhHHHHh
Confidence 45677888888888888888888888888888875
No 175
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.08 E-value=96 Score=19.48 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
|+.++++|..+..+..++.....++
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~ 60 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEF 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444333333
No 176
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=32.04 E-value=1.1e+02 Score=20.79 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 37 AKECRRKKKEYIKCLENRVAILENQNKALIDELKS 71 (82)
Q Consensus 37 A~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~ 71 (82)
|-++-.+-..-++.||+++.....++..+..++..
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666665555555555555543
No 177
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.05 E-value=62 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
..+..|+.+...|..||..|..+-
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567889999999999999998764
No 178
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.96 E-value=38 Score=23.86 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.+..++..|..+|+.+..+++.|+.++.
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666666666666665544
No 179
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.86 E-value=1.6e+02 Score=21.61 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 42 ~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.+-+.+++....++..|..+|..|...+..+...+...
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 34455555556666667777777777666666555443
No 180
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=30.72 E-value=56 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 52 ENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+.++..|......|..+|+.|+..+.+|
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555554444
No 181
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=30.60 E-value=14 Score=26.08 Aligned_cols=12 Identities=50% Similarity=0.509 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy1989 55 VAILENQNKALI 66 (82)
Q Consensus 55 v~~Le~eN~~L~ 66 (82)
+..|+.||..|+
T Consensus 45 ~~~l~~En~rLr 56 (255)
T 2j5u_A 45 VADLKKENKDLK 56 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 182
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.41 E-value=78 Score=18.53 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDEL 69 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~ 69 (82)
+..|+.+++.|+.+...|..++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666666665554
No 183
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.92 E-value=92 Score=18.62 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.|...+..+..+...|+.++..|+....
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566655555544433
No 184
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=29.84 E-value=15 Score=19.70 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILE 59 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le 59 (82)
..|+..||.++..||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 468999999988776
No 185
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.68 E-value=1.2e+02 Score=22.92 Aligned_cols=51 Identities=20% Similarity=0.061 Sum_probs=29.5
Q ss_pred hhHHhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 29 PGSVWMEAAKECRR-KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 29 R~~kNR~aA~~sR~-RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|.+|..--.. +.++-...|-.++..|..+.+.|..++..+.+++..+
T Consensus 51 ~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 51 RHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667766554432 2223445566666666666666666666666665543
No 186
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=29.63 E-value=78 Score=20.82 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 52 ENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
|+.+..+-.+...|-+|++.|-.+|.+|.+
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~ 126 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQ 126 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777888999999999988865
No 187
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=29.23 E-value=1.1e+02 Score=19.92 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy1989 49 KCLENRV 55 (82)
Q Consensus 49 ~~LE~~v 55 (82)
..|+..+
T Consensus 45 g~L~~~l 51 (125)
T 4g2k_A 45 GNLVSRL 51 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 188
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=28.91 E-value=1.2e+02 Score=19.46 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
..|+.++..|+..|..|...+..+.....
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~ 81 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYD 81 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777666665553
No 189
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.66 E-value=1e+02 Score=18.86 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
+..|+..+..+......+...+..+.
T Consensus 104 ~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 104 LQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 190
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.55 E-value=1.1e+02 Score=19.10 Aligned_cols=31 Identities=26% Similarity=0.140 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYC 77 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~ 77 (82)
.+...+.....|......|..++..|+..+.
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 191
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.80 E-value=74 Score=16.87 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 45 KEYIKCLENRVAILENQNKALI 66 (82)
Q Consensus 45 Ke~i~~LE~~v~~Le~eN~~L~ 66 (82)
|.||++||.+-..|.+-..-|+
T Consensus 9 knyiqeleernaelknlkehlk 30 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHH
Confidence 5688888887766654443333
No 192
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.74 E-value=1.2e+02 Score=19.20 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=25.3
Q ss_pred hHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 30 GSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 30 ~~kNR~aA~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.++...-|...=.+|. +.|+..+..|+..-..+..++..+...+.++
T Consensus 92 vE~~~~eA~~~l~~ri---~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 92 VERSIDEAISFLEKRL---KEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEEEHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEecHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444 3445555566666666666666655555544
No 193
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.35 E-value=1.4e+02 Score=23.23 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=28.3
Q ss_pred hhHHhHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 29 PGSVWMEAAKECRR-KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 29 R~~kNR~aA~~sR~-RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|.+|..-... +.++-+..|-.++..|..+...|..++..+.+++..+
T Consensus 53 ~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666443332 2223345555666666666666666666666665443
No 194
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.02 E-value=2.2e+02 Score=22.01 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=26.7
Q ss_pred hhHHhHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1989 29 PGSVWMEAAKECRRKKK---------EYIKCLENRVAILENQNKALIDELKSLKELYCQ 78 (82)
Q Consensus 29 R~~kNR~aA~~sR~RKK---------e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~ 78 (82)
+..+|.+|..--..++. +-...|-.++..|..+.+.|..++..+.+++..
T Consensus 90 ~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 90 EEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666544332221 234455555666666666666666666655544
No 195
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.97 E-value=19 Score=18.47 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+..+..++..|+.+...+..++..++.
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666555554
No 196
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.74 E-value=98 Score=17.90 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 57 ILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.|..++..|..++..|+..+.+.+
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 688888889888888888877654
No 197
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.67 E-value=27 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
+..|+..+..++.....|...+..|..
T Consensus 20 i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 20 IRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 198
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.63 E-value=1.8e+02 Score=20.60 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 46 EYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
+++..||++++.+...-+.....+..+.+-+
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL 43 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSL 43 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555544444444444444433
No 199
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.55 E-value=1.3e+02 Score=18.81 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 51 LENRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 51 LE~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
++.++..|+.+...|..++..|+.
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555565666666665554
No 200
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.39 E-value=1.3e+02 Score=19.01 Aligned_cols=50 Identities=24% Similarity=0.176 Sum_probs=19.5
Q ss_pred CCCccCCCcCcCCCCCCCCccchhch-hHHhHHHHHHHHHHhHHHHHHHHHHHH
Q psy1989 4 HLTHNCSSWLRIQVGPEDSLPKISVP-GSVWMEAAKECRRKKKEYIKCLENRVA 56 (82)
Q Consensus 4 ~~~~~~ss~~~~~~~~ee~~~kr~rR-~~kNR~aA~~sR~RKKe~i~~LE~~v~ 56 (82)
|--|..||++.|....-.+ -+.. +.-|-.+|-..=..|..-+..|...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~---~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~ 55 (110)
T 2v4h_A 5 HHHHHHSSGLVPRGSHMAS---MQLEDLRQQLQQAEEALVAKQELIDKLKEEAE 55 (110)
T ss_dssp --------CCCCTTCCSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcchhHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667776665433222 2233 333444455544555555555555443
No 201
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.06 E-value=1.5e+02 Score=19.65 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 38 KECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 38 ~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
++.|..=...+..|+.+...-+.-...|..|+..|+..
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555444445555555555443
No 202
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.97 E-value=65 Score=22.62 Aligned_cols=43 Identities=9% Similarity=-0.092 Sum_probs=25.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1989 39 ECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 81 (82)
Q Consensus 39 ~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk~ 81 (82)
+.|.-+..-..++-.+.+.+..+...|..+++.+++.+..|+.
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666777777777777776666655543
No 203
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.82 E-value=1.2e+02 Score=25.61 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1989 50 CLENRV 55 (82)
Q Consensus 50 ~LE~~v 55 (82)
.|+.++
T Consensus 988 ~L~~e~ 993 (1080)
T 2dfs_A 988 SLQEEI 993 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 204
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.54 E-value=1.6e+02 Score=19.49 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 50 CLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.||.+++.|+.....-..++..|+..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777766666667777777766553
No 205
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.35 E-value=1.2e+02 Score=19.05 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1989 58 LENQNKALIDELKSLKEL 75 (82)
Q Consensus 58 Le~eN~~L~~q~~~L~~~ 75 (82)
|+.+...|+.....|+..
T Consensus 40 Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 206
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.21 E-value=1.1e+02 Score=17.78 Aligned_cols=32 Identities=13% Similarity=-0.067 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
+..+|.-++.|...-.....++..|+.++..|
T Consensus 23 lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444
No 207
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=23.15 E-value=1.4e+02 Score=19.32 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 49 KCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 49 ~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
.-|+..+..|+........++..|++.+..+
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 1ca9_A 6 EALSSKVQQLERSIGLKDLAMADLEQKVLEM 36 (192)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555544
No 208
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=23.12 E-value=1.1e+02 Score=18.99 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLK 73 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~ 73 (82)
+..|+..+..|...+..+..+...|.
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~l~ 27 (206)
T 3i5c_A 2 MKQLEDKVEELLSKNYHLENEVARLK 27 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666665554
No 209
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=22.97 E-value=1.3e+02 Score=18.12 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1989 53 NRVAILENQNKALIDELKSLKE 74 (82)
Q Consensus 53 ~~v~~Le~eN~~L~~q~~~L~~ 74 (82)
.++..|+.+...|...+..|+.
T Consensus 4 ~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 4 VKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445554544443
No 210
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=22.73 E-value=67 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy1989 63 KALIDELKSLKELYCQQE 80 (82)
Q Consensus 63 ~~L~~q~~~L~~~~~~lk 80 (82)
..|..|+..|+.++..++
T Consensus 29 k~lq~QL~~Lk~ELe~lk 46 (90)
T 1ef1_C 29 ERVQKHLKALTSELANAR 46 (90)
T ss_dssp HHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555555554443
No 211
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.25 E-value=1.5e+02 Score=18.40 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1989 50 CLENRVAILENQNKAL 65 (82)
Q Consensus 50 ~LE~~v~~Le~eN~~L 65 (82)
.|+.++..|...+..|
T Consensus 47 ~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3333333333333333
No 212
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=22.21 E-value=1.1e+02 Score=20.22 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=20.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 37 AKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 75 (82)
Q Consensus 37 A~~sR~RKKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~ 75 (82)
+..||.++|--|.. +..+=.+|..|...+......
T Consensus 96 ~~~~R~KRK~lV~~----IQ~~L~~~D~l~~~i~~~~~~ 130 (137)
T 1t7s_A 96 AKRNREKRKTLVNG----IQTLLNQNDALLRRLQEYQSV 130 (137)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhhHHHH----HHHHHHHhHHHHHHHHHHHHH
Confidence 34677777654444 444666777777776655443
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.00 E-value=1.4e+02 Score=22.41 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 52 ENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 52 E~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
...+..|+.+...|..++..++.++..|+
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445566666667777777777766554
No 214
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.73 E-value=1.8e+02 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.198 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy1989 57 ILENQNKALIDELKS 71 (82)
Q Consensus 57 ~Le~eN~~L~~q~~~ 71 (82)
.|..++..+..++..
T Consensus 21 ~l~~~~~~~~~~~~~ 35 (412)
T 3u06_A 21 ELLRCNEQQAAELET 35 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 215
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.56 E-value=1.9e+02 Score=22.11 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 44 KKEYIKCLENRVAILENQNKALIDELKSLKELY 76 (82)
Q Consensus 44 KKe~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~ 76 (82)
=-+|..+||.++..|......-...|..|+.-|
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNV 143 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 346677777777766543333333444444443
No 216
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.53 E-value=2.2e+02 Score=20.16 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 47 YIKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 47 ~i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
.++++|++++.|+....++.+..+.....+.++.
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne 40 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNE 40 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888777777766665553
No 217
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.22 E-value=2e+02 Score=19.66 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy1989 48 IKCLENRVAI 57 (82)
Q Consensus 48 i~~LE~~v~~ 57 (82)
+..|+..+..
T Consensus 34 l~~le~~~~~ 43 (256)
T 3na7_A 34 LDKALNDKEA 43 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 218
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=21.18 E-value=46 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1989 48 IKCLENRVAILENQNKALIDELK 70 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~ 70 (82)
|-.|+.+|-.||+++..|..++.
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655543
No 219
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.06 E-value=1.6e+02 Score=18.30 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q psy1989 46 EYIKCLENRVAILENQNKAL-------IDELKSLKELYCQQ 79 (82)
Q Consensus 46 e~i~~LE~~v~~Le~eN~~L-------~~q~~~L~~~~~~l 79 (82)
+...+|...+..|+.+-=.| ..+|..|+..|.+|
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444445544444443333 44556666665544
No 220
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.70 E-value=1.6e+02 Score=18.26 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQ 79 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~l 79 (82)
|..||+.-=+|+.....-..+|..|+..|.+|
T Consensus 58 I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 58 LYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 33344444445555555556777777777665
No 221
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.21 E-value=2.3e+02 Score=19.92 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1989 48 IKCLENRVAILENQNKALIDELKSLKELYCQQE 80 (82)
Q Consensus 48 i~~LE~~v~~Le~eN~~L~~q~~~L~~~~~~lk 80 (82)
+..++..+..+..+-..|..++..|++++..|.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~ 126 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIE 126 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555443
Done!