RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1989
(82 letters)
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA
complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Length = 55
Score = 55.9 bits (135), Expect = 1e-12
Identities = 33/45 (73%), Positives = 40/45 (88%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79
EAA+E RRKKKEY+K LENRVA+LENQNK LI+ELK+LK+LY +
Sbjct: 11 EAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex,
transcription/DNA complex; 2.20A {Homo sapiens} SCOP:
h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 44.3 bits (105), Expect = 5e-08
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78
AA + R++K E I LE +V L+ QN L L+E Q
Sbjct: 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo
sapiens} SCOP: h.1.3.1
Length = 61
Score = 43.9 bits (104), Expect = 7e-08
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
AA R+K+K +++ LE + L + N L E+ L+
Sbjct: 11 AAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 38.2 bits (89), Expect = 1e-05
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 78
AA +CR +++E L+ LE++ AL E+ +L + +
Sbjct: 12 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 36.7 bits (85), Expect = 4e-05
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 79
EAA+ R +K + +K LE++V L ++N L +E+ LK+L ++
Sbjct: 19 EAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER 63
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 34.6 bits (80), Expect = 3e-04
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
AA R+KK+ + L LE +N+AL + SL +
Sbjct: 12 TAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51
>2wt7_B Transcription factor MAFB; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 34.2 bits (78), Expect = 6e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
A+ CR K+ + LEN L Q + L E+ L
Sbjct: 37 GYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 33.1 bits (75), Expect = 0.002
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
A CR K+ + LE + A L+ + + L E S+K
Sbjct: 47 GYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL 86
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 31.1 bits (70), Expect = 0.010
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
A ++ R K K +++V L +N+ L +++ L
Sbjct: 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 30.8 bits (69), Expect = 0.011
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 82
A + R++K++++K LE +V L+ + + E L++ Q E E
Sbjct: 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA,
protein-DNA complex, transcription factor, BZIP, C/EBP;
1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A
1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B
1nwq_A
Length = 78
Score = 29.9 bits (67), Expect = 0.022
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 35 EAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
A ++ R K K +++V L +N+ L +++ L
Sbjct: 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.031
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 13 LRIQVGP-EDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNKALIDELKS 71
L + G E L VP + + A+ + ++++ K L + A DE +
Sbjct: 9 LTLSHGSLEHVLL---VPTASFFIAS----QLQEQFNKILPEPT-----EGFAADDEPTT 56
Query: 72 LKEL------YCQQEME 82
EL Y +E
Sbjct: 57 PAELVGKFLGYVSSLVE 73
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 27.0 bits (60), Expect = 0.30
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 46 EYIKCLENRVAILENQNKAL---IDELKSLKEL 75
+YI+ L++ L+ +N +L + + KSLK+L
Sbjct: 50 DYIRFLQHSNQKLKQENLSLRTAVHKSKSLKDL 82
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 121
Score = 27.3 bits (60), Expect = 0.38
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 19 PEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNK 63
P L + V +V + KE +R I+ +N I++ +
Sbjct: 48 PNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGN 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 26.0 bits (58), Expect = 0.73
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 41 RRKKKEYIKCLENRVA-------ILENQNKALIDELKSLKE 74
R +K ++ L +R A LE QNK L+ EL+ LK
Sbjct: 4 RTNEKVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex,
transcription/DNA complex, GAL4, zinc finger, Zn2Cys6,
binuclear cluster; HET: DNA; 3.20A {Saccharomyces
cerevisiae} SCOP: g.38.1.1 h.1.3.1
Length = 96
Score = 26.1 bits (57), Expect = 0.96
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 41 RRKKKEYIKCLENRVAILENQNK 63
+ + Y+ LE+R+A++ K
Sbjct: 43 KDVPRSYVFFLEDRLAVMMRVLK 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.1
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 10 SSWLRIQVGPEDSLPKISVPGSV 32
+S L++ DS P +++ ++
Sbjct: 27 AS-LKL-YAD-DSAPALAIKATM 46
Score = 25.7 bits (55), Expect = 1.8
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 18/33 (54%)
Query: 44 KKEYIKCLENRVAILENQNKALIDELKSLKELY 76
+K+ +K L+ SLK LY
Sbjct: 18 EKQALKKLQA-----------------SLK-LY 32
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 25.8 bits (57), Expect = 1.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
+K YI ++ L ++ L + LK
Sbjct: 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKH 80
>1zme_C Proline utilization transcription activator; complex
(transcription regulation/DNA), PUT3, Zn2Cys6,
binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces
cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Length = 70
Score = 25.1 bits (55), Expect = 1.6
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 41 RRKKKEYIKCLENRVAILENQNKALIDELK 70
+Y++ L+ + +N L L
Sbjct: 39 IVVSTKYLQQLQKDLNDKTEENNRLKALLL 68
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 25.6 bits (57), Expect = 1.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 42 RKKKEYIKCLEN--RVAI-LENQNKALIDELKSLK 73
R K ++ R+ I +N ++ EL+ K
Sbjct: 301 RTKNVAVRSFREGVRITIGKREENDMILRELEVFK 335
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo
sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Length = 39
Score = 24.3 bits (53), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 45 KEYIKCLENRVA-------ILENQNKALIDELKSL 72
K ++ L +R A LE QNK L+ EL+ L
Sbjct: 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET:
DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1
h.1.3.1
Length = 89
Score = 24.4 bits (53), Expect = 3.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 41 RRKKKEYIKCLENRVAILENQNKALI 66
+ ++ +E+R+ LE +
Sbjct: 40 SPLTRAHLTEVESRLERLEQLFLLIF 65
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA LDA; 2.50A
{Caenorhabditis elegans} SCOP: a.37.1.1
Length = 92
Score = 24.1 bits (52), Expect = 3.8
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 36 AAKECRRKKKEYIKCLENRV 55
AA+ CR+++ + + + +
Sbjct: 73 AARTCRQRRTDRHDKMSHYI 92
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 24.5 bits (54), Expect = 4.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 50 CLENRVAILENQNKALIDELKSLKEL 75
LEN+ +++ L LKEL
Sbjct: 266 FLENKENVMKAIEG-FEKSLNHLKEL 290
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA
complex; HET: DNA D3T; 2.40A {Mus musculus}
Length = 360
Score = 24.9 bits (53), Expect = 4.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 54 RVAILENQNKALIDELKSLKELY 76
R + L + N L + L++L E
Sbjct: 9 RPSPLTHHNTLLSEALETLAEAA 31
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 24.5 bits (54), Expect = 4.7
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 50 CLENRVAILENQNKALIDELKSLKEL 75
LEN+ +++ L LKEL
Sbjct: 234 FLENKENVMKAIEG-FEKSLNHLKEL 258
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 24.5 bits (54), Expect = 5.2
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 50 CLENRVAILENQNKALIDELKSLKEL 75
L N+ A+L+ L + L
Sbjct: 242 LLTNQEAVLDRIEN-FKQRLDEVSNL 266
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 24.5 bits (54), Expect = 5.5
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 50 CLENRVAI-LENQNKALIDELKSLK 73
CL R+ + +++ +ID L++ +
Sbjct: 333 CL--RITVGTREESQRVIDALRAEQ 355
>1d66_A Protein (GAL4); protein-DNA complex, double helix,
transcription/DNA complex; HET: DNA; 2.70A
{Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB:
1aw6_A
Length = 66
Score = 23.5 bits (51), Expect = 5.6
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 41 RRKKKEYIKCLENRVAILE 59
+ ++ +E+R+ LE
Sbjct: 47 SPLTRAHLTEVESRLERLE 65
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 24.1 bits (53), Expect = 5.6
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 50 CLENRVAILENQNKALIDELKSLKEL 75
N+ A+L+ + L L L
Sbjct: 230 ATYNQRALLK-SLQDYRQHLDQLITL 254
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif,
transcription activator/DNA complex; 2.85A
{Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Length = 72
Score = 23.2 bits (50), Expect = 6.3
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 41 RRKKKEYIKCLENRVAILENQNKAL 65
R K+ + +E R L L
Sbjct: 44 RTYKRARNEAIEKRFKELTRTLTNL 68
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312,
structural genomics, JOI for structural genomics, JCSG;
HET: PE4; 2.20A {Ruminococcus gnavus}
Length = 104
Score = 23.7 bits (51), Expect = 7.2
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 29 PGSVWMEAA----KECRR-----KKKEYIKCLENRVAI-LENQNKALID 67
G ME A + C + E I CL N+V + ++ ++ +D
Sbjct: 52 NGQAKMEWADCPDQLCVHQKAISRTGESIICLPNQVVVSVQGSKESELD 100
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus
musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB:
1kdh_A* 1kej_A*
Length = 381
Score = 24.2 bits (51), Expect = 7.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 54 RVAILENQNKALIDELKSLKELY 76
R L N N+ D L L E
Sbjct: 28 RRTTLNNYNQLFTDALDILAEND 50
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA
complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP:
a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A*
1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A*
1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A*
1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Length = 335
Score = 23.7 bits (50), Expect = 9.1
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 54 RVAILENQNKALIDELKSLKELY 76
R A E N + D L L
Sbjct: 4 RKAPQETLNGGITDMLTELANFE 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.387
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,261,404
Number of extensions: 59137
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 54
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)