RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1989
         (82 letters)



>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
          thermophilus [TaxId: 274]}
          Length = 122

 Score = 31.2 bits (71), Expect = 0.005
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 19 PEDSLPKISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNK 63
          P  ++ +  V  +V +   KE +R     I+  +N   I+ NQ +
Sbjct: 48 PRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLE 92


>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score = 27.4 bits (61), Expect = 0.15
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 25  KISVPGSVWMEAAKECRRKKKEYIKCLENRVAILENQNK 63
           +  V  +V +   K  RR     +K  +N   I++    
Sbjct: 65  RRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENED 103


>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein
          reductase {Malaria parasite (Plasmodium falciparum)
          [TaxId: 5833]}
          Length = 251

 Score = 25.4 bits (55), Expect = 0.75
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 44 KKEYIKCLENRVAI 57
          K+ Y  C EN+VA+
Sbjct: 1  KENYYYCGENKVAL 14


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 25.7 bits (56), Expect = 0.78
 Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 38  KECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 76
           KE   +  E ++ L +     +   + + +EL+ ++E +
Sbjct: 450 KELLDQIAELLRILGSA----DRLMEVIREELELVREQF 484


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 23.3 bits (50), Expect = 2.6
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 42 RKKKEYIKCLENRVAILENQNKALIDELKSLKE 74
          +K   YI  ++     L ++   L    + LK 
Sbjct: 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKH 80


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 23.7 bits (50), Expect = 3.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 51 LENRVAILENQNKALIDELKSLKELYCQQEME 82
          L  R   L   N+    EL++ KE   Q  ME
Sbjct: 1  LRQRTEELLRCNEQQAAELETCKEQLFQSNME 32


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 22.4 bits (48), Expect = 4.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 46 EYIKCLENRVAILENQNKAL 65
          +YIK L+     L  +N  L
Sbjct: 33 DYIKYLQQVNHKLRQENMVL 52


>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl
          transferase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 95

 Score = 22.9 bits (49), Expect = 4.2
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 54 RVAILENQNKALIDELKSLKELYCQQE 80
          R   L N N+   D L  L E    +E
Sbjct: 10 RRTTLNNYNQLFTDALDILAENDELRE 36


>d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains
           {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
          Length = 181

 Score = 22.3 bits (47), Expect = 8.9
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 3   NHLTHNCSSWLR 14
            +L   C  WLR
Sbjct: 158 AYLEGECVEWLR 169


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.387 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,612
Number of extensions: 12685
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 22
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)