BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1990
(382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKK 109
F ++T+++G+EWSKL EK+ YLD AE DK+RY +EL+ Y+ +DAYQ+Y R+ + ++
Sbjct: 128 FPEITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQKYQNTDAYQTYSRKAKSRQ 185
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
+T+++G+EWSKL EK+ YLD AE DK+RY +EL+ Y+ +DAYQ+Y
Sbjct: 131 ITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQKYQNTDAYQTY 177
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKK 109
F ++T+++G+EWSKL EK+ YLD AE DK+RY +EL+ Y+ +DAYQ+Y R+ + ++
Sbjct: 128 FPEITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQQYQNTDAYQTYSRKAQSRQ 185
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
+T+++G+EWSKL EK+ YLD AE DK+RY +EL+ Y+ +DAYQ+Y
Sbjct: 131 ITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQQYQNTDAYQTY 177
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
F ++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 179
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
F ++T++LGNEWSKL EK+ YLD A+ DK+RY EL+ Y+K++AY+ + R+
Sbjct: 131 FPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRK 183
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
+T++LGNEWSKL EK+ YLD A+ DK+RY EL+ Y+K++AY+ +
Sbjct: 134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVF 180
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
F ++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 129 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 181
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct: 132 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 178
>sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Bos taurus
GN=HMG20B PE=2 SV=1
Length = 317
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 99
L F ++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct: 95 LPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144
>sp|Q9P0W2|HM20B_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Homo sapiens
GN=HMG20B PE=1 SV=1
Length = 317
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 99
L F ++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct: 95 LPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct: 100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144
>sp|Q9Z104|HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Mus musculus
GN=Hmg20b PE=1 SV=1
Length = 317
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 99
L F ++TK+LG EWSKL EK+ YLD AE +K++Y +EL Y++S+AY+
Sbjct: 95 LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 144
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
+TK+LG EWSKL EK+ YLD AE +K++Y +EL Y++S+AY+
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 144
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
+ F QV K+LG +W LS E+K Y D+A DKKRY +E Y+ +A
Sbjct: 52 ISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEA 99
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V K+LG +W LS E+K Y D+A DKKRY +E Y+ +A
Sbjct: 57 VGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEA 99
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
L +++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 91 LKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYL 48
+ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+
Sbjct: 96 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYI 143
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
L +++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 91 LKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYL 48
+ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+
Sbjct: 96 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYI 143
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
++ K LG W K+S EK+ Y+ +A+VDKKRY +E VYR
Sbjct: 586 EIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYR 625
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 39
+ K LG W K+S EK+ Y+ +A+VDKKRY +E VYR
Sbjct: 587 IAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYR 625
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
++ K LG W K++ EK+ Y+++++VDKKRY EE YR + A
Sbjct: 587 EIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAA 630
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
+ K LG W K++ EK+ Y+++++VDKKRY EE YR + A
Sbjct: 588 IAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAA 630
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
L +++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 56 LKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 111
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYL 48
+ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+
Sbjct: 61 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYI 108
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 30/119 (25%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ--------------- 45
+ + LG WS S K+ Y +AE DK R+R E+ Y++ +
Sbjct: 148 ILQTLGKMWSDASDDVKEHYRKKAEEDKARFRREVDEYKRQGGKEYGRGGKIKKDSNAPK 207
Query: 46 -SYLILLFF--------------QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 89
+ +FF +++K G W +L E+KVY + AE DK+RY+ E+
Sbjct: 208 RAMTSFMFFSSDFRSKHSDLSIVEMSKAAGAAWKELGPEERKVYEEMAEKDKERYKREM 266
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 33/44 (75%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
+ F +V K+LG++W ++S +K+ Y +A+VDK+RY++E+ Y+
Sbjct: 587 IAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYK 630
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 30/39 (76%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 39
V K+LG++W ++S +K+ Y +A+VDK+RY++E+ Y+
Sbjct: 592 VGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYK 630
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica
GN=SSRP1-A PE=2 SV=1
Length = 641
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
++ K LG W K++ EK+ Y+ +++VDKKRY +E VYR + A
Sbjct: 585 EIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAA 628
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
+ K LG W K++ EK+ Y+ +++VDKKRY +E VYR + A
Sbjct: 586 IAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAA 628
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
+ F QV ++LG +W LS EK+ Y +AE DKKRY E ++Y + A
Sbjct: 46 ISFGQVGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V ++LG +W LS EK+ Y +AE DKKRY E ++Y + A
Sbjct: 51 VGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 95
+ TKL+G WS LS E+ VY D DK+RY+ EL YR++
Sbjct: 283 EFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRET 324
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
TKL+G WS LS E+ VY D DK+RY+ EL YR++
Sbjct: 285 TKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRET 324
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=nhp6 PE=3 SV=1
Length = 104
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
+ F QV K+LG W LS E++ Y ++A DKKRY +E Y
Sbjct: 50 ISFGQVGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASY 92
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
V K+LG W LS E++ Y ++A DKKRY +E Y
Sbjct: 55 VGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASY 92
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
+ F QV ++LG W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 52 VTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V ++LG W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 57 VGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
F V ++LG +W LS EK+ Y +A+ DKKRY++E+ Y+
Sbjct: 585 FTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYK 626
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 39
V ++LG +W LS EK+ Y +A+ DKKRY++E+ Y+
Sbjct: 588 VGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYK 626
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=NHP6 PE=3 SV=1
Length = 92
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
+ F QV KLLG +W L+ +K Y ++A+ DKKRY +E Y K +A
Sbjct: 44 ISFGQVGKLLGEKWKALTPEDKIPYENKADTDKKRYEKEKAEYAKKNA 91
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V KLLG +W L+ +K Y ++A+ DKKRY +E Y K +A
Sbjct: 49 VGKLLGEKWKALTPEDKIPYENKADTDKKRYEKEKAEYAKKNA 91
>sp|Q9UVL1|NHP6_CANAL Non-histone chromosomal protein 6 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
+ F QV KLLG +W L+ +K Y ++AE DKKRY +E Y K ++
Sbjct: 44 ISFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V KLLG +W L+ +K Y ++AE DKKRY +E Y K ++
Sbjct: 49 VGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
+ F QV ++LG +W L+ EK Y +AE DKKRY E ++Y
Sbjct: 43 ITFGQVGRILGEKWKALNEDEKAPYEAKAEADKKRYESEKELY 85
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
V ++LG +W L+ EK Y +AE DKKRY E ++Y
Sbjct: 48 VGRILGEKWKALNEDEKAPYEAKAEADKKRYESEKELY 85
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
+ F QV K LG +W L+ EK+ Y +A+ DKKRY E ++Y
Sbjct: 46 ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
V K LG +W L+ EK+ Y +A+ DKKRY E ++Y
Sbjct: 51 VGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 28/114 (24%)
Query: 8 EWSKLSLPEKKVYLDRAEVDKKRYREELKVY-------RKSDAY------QSYLILL--- 51
+W +S EK Y A++DK RY+EE+ Y RK D + S+L+
Sbjct: 48 KWRSISKHEKAKYEALAKLDKARYQEEMMNYFGRRKKRRKRDPHAPRRPPSSFLLFCQDH 107
Query: 52 ------------FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
QV K G WS + +K+ Y RA + + +YREEL VYR
Sbjct: 108 YAQLKSENPSWSVVQVAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVYR 161
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 39
V K G WS + +K+ Y RA + + +YREEL VYR
Sbjct: 123 VAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVYR 161
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=nhp-6 PE=3 SV=1
Length = 103
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
+ F QV K+LG W LS ++ Y +A DKKRY +E + Y
Sbjct: 51 VSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
V K+LG W LS ++ Y +A DKKRY +E + Y
Sbjct: 56 VGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 40
+++++G W+KL+ EK +Y +A DK+RYR E++ YR+
Sbjct: 292 ISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYRE 331
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 55 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 94
+++++G W+KL+ EK +Y +A DK+RYR E++ YR+
Sbjct: 292 ISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYRE 331
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
+ F QV KLLG W L+ ++ Y +A DKKRY +E + Y
Sbjct: 49 ISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAY 91
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
V KLLG W L+ ++ Y +A DKKRY +E + Y
Sbjct: 54 VGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAY 91
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
+TK +G+ WS L+ EK+VY D+ D +RYR E+ Y+ S
Sbjct: 267 ITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSS 307
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 55 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 95
+TK +G+ WS L+ EK+VY D+ D +RYR E+ Y+ S
Sbjct: 267 ITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSS 307
>sp|Q8WNV5|SOX30_MACFA Transcription factor SOX-30 OS=Macaca fascicularis GN=SOX30 PE=2
SV=1
Length = 753
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK--VYRKSDAYQSYLRRKRVKKIQ 111
+++ LG EW+KLS +KK Y D A+ K+++REE VY+ +RKR
Sbjct: 366 EISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG-----KRKRFP--- 417
Query: 112 HHCLTAKVFSGTSE 125
+ VFSGT++
Sbjct: 418 --LSVSNVFSGTTQ 429
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 36
++ LG EW+KLS +KK Y D A+ K+++REE
Sbjct: 367 ISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFP 402
>sp|O94993|SOX30_HUMAN Transcription factor SOX-30 OS=Homo sapiens GN=SOX30 PE=1 SV=1
Length = 753
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK--VYRKSDAYQSYLRRKRVKKIQ 111
+++ LG EW+KLS +KK Y D A+ K+++REE VY+ +RKR
Sbjct: 366 EISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG-----KRKRFP--- 417
Query: 112 HHCLTAKVFSGTSE 125
+ VFSGT++
Sbjct: 418 --LSVSNVFSGTTQ 429
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 5 LGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 36
LG EW+KLS +KK Y D A+ K+++REE
Sbjct: 371 LGLEWNKLSEEQKKPYYDEAQKIKEKHREEFP 402
>sp|Q8CGW4|SOX30_MOUSE Transcription factor SOX-30 OS=Mus musculus GN=Sox30 PE=2 SV=1
Length = 782
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK--VYRKSDAYQSYLRRKRVKKIQ 111
+++ LG EW+KLS +KK Y D A+ K+++REE VY+ +RKR
Sbjct: 395 EISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG-----KRKRFP--- 446
Query: 112 HHCLTAKVFSGTSE 125
+ VFSGT++
Sbjct: 447 --LSVSNVFSGTTQ 458
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 35
++ LG EW+KLS +KK Y D A+ K+++REE
Sbjct: 396 ISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEF 430
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 37.4 bits (85), Expect = 0.17, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
+ F QV K LG +W L+ EK Y ++A DKKRY +E Y+ + A
Sbjct: 50 IAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAA 97
Score = 34.3 bits (77), Expect = 1.4, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V K LG +W L+ EK Y ++A DKKRY +E Y+ + A
Sbjct: 55 VGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAA 97
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 57 KLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKKIQHHCLT 116
K GN W+ LS ++KVY +++ D KRY+ E+ YR L RV
Sbjct: 246 KNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRS-------LMESRV--------- 289
Query: 117 AKVFSGTSEGRDSGTYKTRGGLQANGTEESDIATDATDEIDEEEE 161
A++ + T G + +T ++D T A+ + E+E
Sbjct: 290 AEIVAATDAGTSASAAETADEASQENLAKTDACTSASSAAETEDE 334
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 3 KLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 39
K GN W+ LS ++KVY +++ D KRY+ E+ YR
Sbjct: 246 KNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYR 282
>sp|Q55C24|NHP6_DICDI Non-histone chromosomal protein 6 homolog OS=Dictyostelium
discoideum GN=nhp6 PE=3 SV=1
Length = 141
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
F ++ LLG EW+K+S +KK Y A DKKR+ E K Y
Sbjct: 80 FGEIGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNY 120
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
+ LLG EW+K+S +KK Y A DKKR+ E K Y
Sbjct: 83 IGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNY 120
>sp|Q66JW3|TOX_MOUSE Thymocyte selection-associated high mobility group box protein TOX
OS=Mus musculus GN=Tox PE=1 SV=2
Length = 526
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKKIQ 111
F +V+K++ + W L +K+VY + E KK Y ++L YR S +SY VK Q
Sbjct: 288 FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYTDPVDVKTSQ 347
Query: 112 HHCLT---AKVFSGTSEGRDS 129
L VF G S+ +
Sbjct: 348 PPQLVNSKPSVFHGPSQAHSA 368
>sp|O94900|TOX_HUMAN Thymocyte selection-associated high mobility group box protein TOX
OS=Homo sapiens GN=TOX PE=2 SV=3
Length = 526
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKKIQ 111
F +V+K++ + W L +K+VY + E KK Y ++L YR S +SY VK Q
Sbjct: 288 FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYSEPVDVKTSQ 347
Query: 112 HHCLT---AKVFSGTSEGRDS 129
L VF G S+ +
Sbjct: 348 PPQLINSKPSVFHGPSQAHSA 368
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 95
F +V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 281 FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 324
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 284 VSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 324
>sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3
PE=3 SV=1
Length = 689
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V K G +W +S +KK + D+A DK RY E+K Y+K+
Sbjct: 589 VAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGG 631
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 55 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
V K G +W +S +KK + D+A DK RY E+K Y+K+
Sbjct: 589 VAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGG 631
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 95
F +V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 282 FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 325
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 285 VSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 325
>sp|B7SBD2|TOX3_RAT TOX high mobility group box family member 3 OS=Rattus norvegicus
GN=Tox3 PE=1 SV=1
Length = 577
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 95
F +V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 281 FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 324
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 284 VSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 324
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
F Q+ LLG W +L+ E++ Y ++A DK+RY E K Y
Sbjct: 43 FGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEY 83
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 4 LLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
LLG W +L+ E++ Y ++A DK+RY E K Y
Sbjct: 49 LLGKRWKELTSTEREPYEEKARQDKERYERERKEY 83
>sp|Q6AXL8|ZMAT5_DANRE Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1
Length = 173
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 167 YCRVCDQWF-TTLHNKREHLNGRQHFQA 193
YC CD+ F LHN+++HLNG QH +A
Sbjct: 6 YCDYCDRSFQDNLHNRKKHLNGVQHHRA 33
>sp|Q09390|HMG12_CAEEL High mobility group protein 1.2 OS=Caenorhabditis elegans
GN=hmg-1.2 PE=2 SV=2
Length = 235
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 34/127 (26%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKV--YRKSDAYQS------------ 46
++K +W + EK+ + + A+ D +RY+ E+ V Y DA +
Sbjct: 77 ISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPK 136
Query: 47 -YLILLFF-------------------QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYR 86
L FF QV + LG W + K +Y +A+ DK RY
Sbjct: 137 RALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYA 196
Query: 87 EELKVYR 93
+E++ Y+
Sbjct: 197 DEMRNYK 203
>sp|Q2TA39|ZMAT5_BOVIN Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1
Length = 170
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 167 YCRVCDQWFT-TLHNKREHLNGRQHFQA 193
+C CD+ F LHN+++HLNG QH +A
Sbjct: 6 FCDYCDRSFQDNLHNRKKHLNGLQHLKA 33
>sp|Q9CQR5|ZMAT5_MOUSE Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2
SV=1
Length = 170
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 167 YCRVCDQWFT-TLHNKREHLNGRQHFQA 193
+C CD+ F LHN+++HLNG QH +A
Sbjct: 6 FCDYCDRSFQDNLHNRKKHLNGLQHLKA 33
>sp|Q9UDW3|ZMAT5_HUMAN Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1
SV=1
Length = 170
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 167 YCRVCDQWFT-TLHNKREHLNGRQHFQA 193
+C CD+ F LHN+++HLNG QH +A
Sbjct: 6 FCDYCDRSFQDNLHNRKKHLNGLQHLKA 33
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 36/123 (29%)
Query: 9 WSKLSLPEKKVYLDRAEVDKKRYREELKVY-----------------RKSDAYQSYLILL 51
W + EKK + + AE DK+RY E++ Y + +A + L
Sbjct: 219 WKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAF 278
Query: 52 FF-------------------QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
F+ + K LG +WS + K+ Y AE DK RY E+ Y
Sbjct: 279 FWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEY 338
Query: 93 RKS 95
+ S
Sbjct: 339 KTS 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,455,299
Number of Sequences: 539616
Number of extensions: 5750895
Number of successful extensions: 23908
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 23314
Number of HSP's gapped (non-prelim): 626
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)