AmiGO: BLAST Results


BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Homo sapiens	7.0e-09
BLAST match view associations BLAST with Hmg20a Hmg20a Hmg20a high mobility group 20A	protein from Mus musculus	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A High-mobility group 20A	protein from Bos taurus	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A Uncharacterized protein	protein from Canis lupus familiaris	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A High mobility group protein 20A	protein from Homo sapiens	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A High mobility group protein 20A	protein from Gallus gallus	6.0e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Bos taurus	6.2e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Homo sapiens	6.2e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Homo sapiens	6.5e-08
BLAST match view associations BLAST with Hmg20a Hmg20a Hmg20a high mobility group 20A	gene from Rattus norvegicus	7.1e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B Uncharacterized protein	protein from Canis lupus familiaris	1.0e-07
BLAST match view associations BLAST with Hmg20b Hmg20b Hmg20b high mobility group 20B	protein from Mus musculus	1.9e-06
BLAST match view associations BLAST with Hmg20b Hmg20b Hmg20b high mobility group 20 B	gene from Rattus norvegicus	1.9e-06
BLAST match view associations BLAST with D4A2L7 D4A2L7 D4A2L7 Uncharacterized protein	protein from Rattus norvegicus	2.2e-06
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	1.5e-05
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	1.6e-05
BLAST match view associations BLAST with NHP6A NHP6A NHP6A	gene_product from Candida albicans	5.7e-05
BLAST match view associations BLAST with NHP6 NHP6 NHP6 Non-histone chromosomal protein 6	protein from Candida albicans SC5314	5.7e-05
BLAST match view associations BLAST with MAL8P1.72 MAL8P1.72 MAL8P1.72 high mobility group protein, putative	gene from Plasmodium falciparum	0.00012
BLAST match view associations BLAST with PfHMGB2 PfHMGB2 PfHMGB2 High mobility group protein	protein from Plasmodium falciparum 3D7	0.00012
BLAST match view associations BLAST with NHP6B NHP6B NHP6B High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	0.00012
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 Uncharacterized protein	protein from Gallus gallus	0.00032
BLAST match view associations BLAST with LOC100521398 LOC100521398 LOC100521398 Uncharacterized protein	protein from Sus scrofa	0.00033
BLAST match view associations BLAST with Smarce1 Smarce1 Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	gene from Rattus norvegicus	0.00038
BLAST match view associations BLAST with NHP6A NHP6A NHP6A High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	0.00042
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 Uncharacterized protein	protein from Canis lupus familiaris	0.00044
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	0.00044
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	0.00050
BLAST match view associations BLAST with Smarce1 Smarce1 Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein from Mus musculus	0.00050
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SMARCE1 protein	protein from Bos taurus	0.00052
BLAST match view associations BLAST with hmgb1b hmgb1b hmgb1b high-mobility group box 1b	gene_product from Danio rerio	0.00056
BLAST match view associations BLAST with hmgb1a hmgb1a hmgb1a high-mobility group box 1a	gene_product from Danio rerio	0.00078

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy1990
        (382 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|C9J8X5 - symbol:HMG20B "SWI/SNF-related matrix-...   149  7.0e-09   1
MGI|MGI:1914117 - symbol:Hmg20a "high mobility group 20A"...   150  5.9e-08   1
UNIPROTKB|Q0VCL5 - symbol:HMG20A "High-mobility group 20A...   150  5.9e-08   1
UNIPROTKB|E2RKW6 - symbol:HMG20A "Uncharacterized protein...   150  5.9e-08   1
UNIPROTKB|Q9NP66 - symbol:HMG20A "High mobility group pro...   150  5.9e-08   1
UNIPROTKB|F1N8B1 - symbol:LOC100857252 "Uncharacterized p...   150  6.0e-08   1
UNIPROTKB|Q5ZKF4 - symbol:HMG20A "High mobility group pro...   150  6.0e-08   1
UNIPROTKB|Q32L68 - symbol:HMG20B "SWI/SNF-related matrix-...   149  6.2e-08   1
UNIPROTKB|Q9P0W2 - symbol:HMG20B "SWI/SNF-related matrix-...   149  6.2e-08   1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-...   130  6.5e-08   1
RGD|1564760 - symbol:Hmg20a "high mobility group 20A" spe...   150  7.1e-08   1
UNIPROTKB|E2R4Z8 - symbol:HMG20B "Uncharacterized protein...   147  1.0e-07   1
MGI|MGI:1341190 - symbol:Hmg20b "high mobility group 20B"...   136  1.9e-06   1
RGD|1309235 - symbol:Hmg20b "high mobility group 20 B" sp...   136  1.9e-06   1
UNIPROTKB|D4A2L7 - symbol:D4A2L7 "Uncharacterized protein...   116  2.2e-06   1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer...   113  4.6e-06   1
UNIPROTKB|J3QR61 - symbol:SMARCE1 "SWI/SNF-related matrix...   111  1.5e-05   1
UNIPROTKB|J3KT85 - symbol:SMARCE1 "SWI/SNF-related matrix...   108  1.6e-05   1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic...   103  5.7e-05   1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p...   103  5.7e-05   1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob...   100  0.00012   1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr...   100  0.00012   1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ...   100  0.00012   1
UNIPROTKB|F1NCC9 - symbol:SMARCE1 "Uncharacterized protei...   111  0.00032   2
UNIPROTKB|F1RXE6 - symbol:SMARCE1 "Uncharacterized protei...   111  0.00033   1
RGD|1304726 - symbol:Smarce1 "SWI/SNF related, matrix ass...   111  0.00038   2
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ...    95  0.00042   1
UNIPROTKB|E2QX86 - symbol:SMARCE1 "Uncharacterized protei...   111  0.00044   2
UNIPROTKB|B4DGM3 - symbol:SMARCE1 "cDNA FLJ55202, highly ...   111  0.00044   2
UNIPROTKB|Q969G3 - symbol:SMARCE1 "SWI/SNF-related matrix...   111  0.00050   2
MGI|MGI:1927347 - symbol:Smarce1 "SWI/SNF related, matrix...   111  0.00050   2
UNIPROTKB|A5PKF6 - symbol:SMARCE1 "SMARCE1 protein" speci...   111  0.00052   2
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ...   106  0.00056   1
UNIPROTKB|B4DFR4 - symbol:SMARCE1 "Smarce1 variant 5" spe...   108  0.00060   2
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g...    77  0.00078   2


>UNIPROTKB|C9J8X5 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
            regulation of protein sumoylation" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
            OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
            IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
            Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
            Uniprot:C9J8X5
        Length = 215

 Score = 149 (57.5 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 31/81 (38%), Positives = 51/81 (62%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKK 109
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+    + + KK
Sbjct:    95 LPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKK 154

Query:   110 IQHHCLTAKVFSGTSEGRDSG 130
             I+    ++ + +    G   G
Sbjct:   155 IKKEDSSSGLMNTLLNGHKGG 175

 Score = 133 (51.9 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 24/45 (53%), Positives = 36/45 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct:   100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144


>MGI|MGI:1914117 [details] [associations]
            symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IGI;IDA]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
            GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
            HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
            EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
            EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
            EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
            IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
            ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
            PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
            Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
            UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
            GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
            Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
            GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
        Length = 346

 Score = 150 (57.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct:   129 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 181

 Score = 141 (54.7 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct:   132 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 178


>UNIPROTKB|Q0VCL5 [details] [associations]
            symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
            taurus" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
            OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
            EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
            RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
            Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
            InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
        Length = 347

 Score = 150 (57.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct:   130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182

 Score = 141 (54.7 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct:   133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 179


>UNIPROTKB|E2RKW6 [details] [associations]
            symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
            EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
            Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
            NextBio:20861223 Uniprot:E2RKW6
        Length = 347

 Score = 150 (57.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct:   130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182

 Score = 141 (54.7 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct:   133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 179


>UNIPROTKB|Q9NP66 [details] [associations]
            symbol:HMG20A "High mobility group protein 20A"
            species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
            CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
            EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
            EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
            IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
            ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
            MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
            PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
            Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
            KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
            GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
            neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
            OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
            NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
            Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
        Length = 347

 Score = 150 (57.9 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct:   130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182

 Score = 141 (54.7 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct:   133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 179


>UNIPROTKB|F1N8B1 [details] [associations]
            symbol:LOC100857252 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
            GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
            EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
            EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
            Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
        Length = 348

 Score = 150 (57.9 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY  EL+ Y+K++AY+ + R+
Sbjct:   131 FPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRK 183

 Score = 141 (54.7 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 25/47 (53%), Positives = 37/47 (78%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY  EL+ Y+K++AY+ +
Sbjct:   134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVF 180


>UNIPROTKB|Q5ZKF4 [details] [associations]
            symbol:HMG20A "High mobility group protein 20A"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
            UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
            GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
            HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
            Uniprot:Q5ZKF4
        Length = 348

 Score = 150 (57.9 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY  EL+ Y+K++AY+ + R+
Sbjct:   131 FPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRK 183

 Score = 141 (54.7 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 25/47 (53%), Positives = 37/47 (78%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY  EL+ Y+K++AY+ +
Sbjct:   134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVF 180


>UNIPROTKB|Q32L68 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
            "chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
            HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
            IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
            ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
            GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
            OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
        Length = 317

 Score = 149 (57.5 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 31/81 (38%), Positives = 51/81 (62%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKK 109
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+    + + KK
Sbjct:    95 LPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCAEKIQEKK 154

Query:   110 IQHHCLTAKVFSGTSEGRDSG 130
             I+    ++ + +    G   G
Sbjct:   155 IKKEDSSSGLMNTLLNGHKGG 175

 Score = 133 (51.9 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 24/45 (53%), Positives = 36/45 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct:   100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144


>UNIPROTKB|Q9P0W2 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
            "negative regulation of protein sumoylation" evidence=IEA]
            [GO:0045666 "positive regulation of neuron differentiation"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
            evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
            "blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
            EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
            GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
            GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
            GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
            EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
            EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
            EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
            IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
            UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
            IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
            DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
            GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
            HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
            InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
            NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
            Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
        Length = 317

 Score = 149 (57.5 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 31/81 (38%), Positives = 51/81 (62%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKK 109
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+    + + KK
Sbjct:    95 LPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKK 154

Query:   110 IQHHCLTAKVFSGTSEGRDSG 130
             I+    ++ + +    G   G
Sbjct:   155 IKKEDSSSGLMNTLLNGHKGG 175

 Score = 133 (51.9 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 24/45 (53%), Positives = 36/45 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct:   100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144


>UNIPROTKB|C9JQA7 [details] [associations]
            symbol:HMG20B "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member
            1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
            regulation of protein sumoylation" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
            HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
            ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
            Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
            Uniprot:C9JQA7
        Length = 142

 Score = 130 (50.8 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+A
Sbjct:    95 LPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA 142

 Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 23/43 (53%), Positives = 34/43 (79%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+A
Sbjct:   100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA 142


>RGD|1564760 [details] [associations]
            symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
            norvegicus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=ISO] [GO:0046982 "protein heterodimerization activity"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
            Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
            Uniprot:D3Z9E3
        Length = 376

 Score = 150 (57.9 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 104
             F ++T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct:   130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182

 Score = 141 (54.7 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
             +T++LGNEWSKL   EK+ YLD A+ DK+RY +EL+ Y+K++AY+ +
Sbjct:   133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVF 179


>UNIPROTKB|E2R4Z8 [details] [associations]
            symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IEA] [GO:0033234 "negative regulation of
            protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
            EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
        Length = 316

 Score = 147 (56.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKK 109
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+    + + KK
Sbjct:    95 LPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKK 154

Query:   110 IQ 111
             I+
Sbjct:   155 IK 156

 Score = 133 (51.9 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 24/45 (53%), Positives = 36/45 (80%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL+ Y++S+AY+
Sbjct:   100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYK 144


>MGI|MGI:1341190 [details] [associations]
            symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
            musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
            [GO:0000794 "condensed nuclear chromosome" evidence=ISA]
            [GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
            binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
            organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
            evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
            "negative regulation of protein sumoylation" evidence=IDA]
            [GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
            [GO:0045666 "positive regulation of neuron differentiation"
            evidence=IGI] [GO:0046982 "protein heterodimerization activity"
            evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
            Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
            GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
            GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
            OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
            EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
            RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
            UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
            SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
            PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
            Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
            KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
            EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
            CleanEx:MM_HMG20B Genevestigator:Q9Z104
            GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
            Uniprot:Q9Z104
        Length = 317

 Score = 136 (52.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ---SYLRRKR 106
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL  Y++S+AY+     ++  +
Sbjct:    95 LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENK 154

Query:   107 VKK 109
             +KK
Sbjct:   155 IKK 157

 Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 24/45 (53%), Positives = 35/45 (77%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL  Y++S+AY+
Sbjct:   100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 144


>RGD|1309235 [details] [associations]
            symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
            norvegicus" [GO:0033234 "negative regulation of protein
            sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
            differentiation" evidence=ISO] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
            Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
            GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
            OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
            Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
            UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
        Length = 318

 Score = 136 (52.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ---SYLRRKR 106
             L F ++TK+LG EWSKL   EK+ YLD AE +K++Y +EL  Y++S+AY+     ++  +
Sbjct:    95 LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENK 154

Query:   107 VKK 109
             +KK
Sbjct:   155 IKK 157

 Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 24/45 (53%), Positives = 35/45 (77%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
             +TK+LG EWSKL   EK+ YLD AE +K++Y +EL  Y++S+AY+
Sbjct:   100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 144


>UNIPROTKB|D4A2L7 [details] [associations]
            symbol:D4A2L7 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
            Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
        Length = 135

 Score = 116 (45.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 27/92 (29%), Positives = 43/92 (46%)

Query:     2 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGN 61
             +K     W  +S  EK  + D A+ DK RY  E+K Y         L +    V K LG 
Sbjct:    42 SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGEHPGLSI--GDVVKKLGE 99

Query:    62 EWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
              W+  +  +K+ Y  +A   K++Y +++  YR
Sbjct:   100 MWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 131


>ASPGD|ASPL0000037691 [details] [associations]
            symbol:AN2885 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
            polymerase III transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
            EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
            GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
            SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
            GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
        Length = 106

 Score = 113 (44.8 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
             F QV K+LG +W  LS  E+K Y D+A  DKKRY +E   Y+  +A
Sbjct:    54 FGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEA 99

 Score = 105 (42.0 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
             V K+LG +W  LS  E+K Y D+A  DKKRY +E   Y+  +A
Sbjct:    57 VGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEA 99


>UNIPROTKB|J3QR61 [details] [associations]
            symbol:SMARCE1 "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member 1"
            species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
            evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
            "nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
            Uniprot:J3QR61
        Length = 153

 Score = 111 (44.1 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    37 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 92

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:    93 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 128


>UNIPROTKB|J3KT85 [details] [associations]
            symbol:SMARCE1 "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member 1"
            species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
            evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
            "nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
            Uniprot:J3KT85
        Length = 101

 Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             L  +++ K++G  W  L+  EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:    21 LKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 76

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYL 48
             + K++G  W  L+  EK+ YL+  E +K  Y E +K Y  S AY +Y+
Sbjct:    26 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYI 73


>CGD|CAF0007020 [details] [associations]
            symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
            CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
            ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 103 (41.3 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
             F QV KLLG +W  L+  +K  Y ++AE DKKRY +E   Y K ++
Sbjct:    46 FGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91

 Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
             V KLLG +W  L+  +K  Y ++AE DKKRY +E   Y K ++
Sbjct:    49 VGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91


>UNIPROTKB|Q9UVL1 [details] [associations]
            symbol:NHP6 "Non-histone chromosomal protein 6"
            species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
            evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
            EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
            SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 103 (41.3 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
             F QV KLLG +W  L+  +K  Y ++AE DKKRY +E   Y K ++
Sbjct:    46 FGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91

 Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
             V KLLG +W  L+  +K  Y ++AE DKKRY +E   Y K ++
Sbjct:    49 VGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91


>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
            symbol:MAL8P1.72 "high mobility group protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
            EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
            GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
            RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
            MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
            KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
            Uniprot:Q8IB14
        Length = 99

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query:    54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 96
             QV KL+G  W +LS  +K  Y  +A++DK RY +E++ YRK +
Sbjct:    55 QVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97

 Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 42
             V KL+G  W +LS  +K  Y  +A++DK RY +E++ YRK +
Sbjct:    56 VGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97


>UNIPROTKB|Q8IB14 [details] [associations]
            symbol:PfHMGB2 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0006359 "regulation of
            transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
            HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
            ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
            ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
            EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
            EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
        Length = 99

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query:    54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 96
             QV KL+G  W +LS  +K  Y  +A++DK RY +E++ YRK +
Sbjct:    55 QVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97

 Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 42
             V KL+G  W +LS  +K  Y  +A++DK RY +E++ YRK +
Sbjct:    56 VGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97


>SGD|S000002157 [details] [associations]
            symbol:NHP6B "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
            "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
            remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
            transcriptional preinitiation complex assembly" evidence=IGI;IDA]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
            SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
            EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
            HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
            EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
            PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
            DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
            PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
            GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
            Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
        Length = 99

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query:    52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
             F QV ++LG  W  L+  EK+ Y  +A+ DKKRY  E ++Y  + A
Sbjct:    54 FGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99

 Score = 92 (37.4 bits), Expect = 0.00089, P = 0.00089
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query:     1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
             V ++LG  W  L+  EK+ Y  +A+ DKKRY  E ++Y  + A
Sbjct:    57 VGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99


>UNIPROTKB|F1NCC9 [details] [associations]
            symbol:SMARCE1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
            [GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
            "N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
            complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
            receptor binding" evidence=IEA] [GO:0017053 "transcriptional
            repressor complex" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
            N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
            evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
            GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
            GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
            RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
            GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
        Length = 412

 Score = 111 (44.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    55 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 110

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:   111 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146

 Score = 48 (22.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 22/80 (27%), Positives = 37/80 (46%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R    +    +  EK A E AQA
Sbjct:   235 MVHQRKLEAELLQIEERHQEKKRKFLESTESFNNELKR--LCSLKVEVDMEKIAAEIAQA 292

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   293 EEQARKRQEEREKEAAEQAE 312


>UNIPROTKB|F1RXE6 [details] [associations]
            symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
            complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
            complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
            receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
            evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0006337 "nucleosome disassembly" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
            GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
            EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
        Length = 194

 Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    55 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 110

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:   111 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146


>RGD|1304726 [details] [associations]
            symbol:Smarce1 "SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily e, member 1"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
            "nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
            remodeling" evidence=ISO] [GO:0007399 "nervous system development"
            evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
            evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
            "ligand-dependent nuclear receptor binding" evidence=ISO]
            [GO:0017053 "transcriptional repressor complex" evidence=ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0047485 "protein N-terminus binding"
            evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
            "nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
            GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
            EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
            EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
            UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
            GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
            Genevestigator:Q56A18 Uniprot:Q56A18
        Length = 376

 Score = 111 (44.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    20 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 75

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:    76 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 111

 Score = 46 (21.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   200 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 257

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   258 EEQARKRQEEREKEAAEQAE 277


>SGD|S000006256 [details] [associations]
            symbol:NHP6A "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
            III transcriptional preinitiation complex assembly"
            evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
            evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
            repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
            EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
            EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
            PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
            DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
            MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
            EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
            OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
            NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
            GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
        Length = 93

 Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
             + F QV K LG +W  L+  EK+ Y  +A+ DKKRY  E ++Y
Sbjct:    46 ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88


>UNIPROTKB|E2QX86 [details] [associations]
            symbol:SMARCE1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
            [GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
            N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0016922
            "ligand-dependent nuclear receptor binding" evidence=IEA]
            [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
            "N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
            remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
            GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
            GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
            OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
            RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
            KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
        Length = 393

 Score = 111 (44.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    37 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 92

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:    93 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 128

 Score = 46 (21.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   217 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 274

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   275 EEQARKRQEEREKEAAEQAE 294


>UNIPROTKB|B4DGM3 [details] [associations]
            symbol:SMARCE1 "cDNA FLJ55202, highly similar to
            SWI/SNF-related matrix-associatedactin-dependent regulator of
            chromatin subfamily E member 1" species:9606 "Homo sapiens"
            [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
            complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
            HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
            EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
            STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
        Length = 393

 Score = 111 (44.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    37 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 92

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:    93 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 128

 Score = 46 (21.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   217 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 274

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   275 EEQARKRQEEREKEAAEQAE 294


>UNIPROTKB|Q969G3 [details] [associations]
            symbol:SMARCE1 "SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily E member 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
            binding" evidence=IPI] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0017053
            "transcriptional repressor complex" evidence=IPI] [GO:0008080
            "N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
            complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
            [GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
            binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
            "transcription coactivator activity" evidence=NAS] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
            "ligand-dependent nuclear receptor binding" evidence=IPI]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
            GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
            GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
            GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
            GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
            EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
            EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
            RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
            SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
            MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
            PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
            GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
            GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
            neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
            HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
            OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
            ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
            Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
        Length = 411

 Score = 111 (44.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    55 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 110

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:   111 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146

 Score = 46 (21.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   235 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 292

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   293 EEQARKRQEEREKEAAEQAE 312


>MGI|MGI:1927347 [details] [associations]
            symbol:Smarce1 "SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily e, member 1"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
            disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
            evidence=ISO] [GO:0007399 "nervous system development"
            evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
            evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
            "ligand-dependent nuclear receptor binding" evidence=ISO]
            [GO:0017053 "transcriptional repressor complex" evidence=ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0047485 "protein N-terminus binding"
            evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
            "nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
            MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
            GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
            GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
            eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
            OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
            EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
            RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
            ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
            PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
            Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
            GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
            NextBio:313752 Bgee:O54941 Genevestigator:O54941
            GermOnline:ENSMUSG00000037935 Uniprot:O54941
        Length = 411

 Score = 111 (44.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    55 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 110

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:   111 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146

 Score = 46 (21.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   235 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 292

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   293 EEQARKRQEEREKEAAEQAE 312


>UNIPROTKB|A5PKF6 [details] [associations]
            symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
            [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
            complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
            complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
            receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
            evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0006337 "nucleosome disassembly" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
            GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
            GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
            HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
            OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
            EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
            UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
            GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
            Uniprot:A5PKF6
        Length = 415

 Score = 111 (44.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query:    10 SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLP 69
             S +++P+     D+  +   RY    KV+ +  A    L L  +++ K++G  W  L+  
Sbjct:    55 SGITIPKPPKPPDKPLMPYMRYSR--KVWDQVKASNPDLKL--WEIGKIIGGMWRDLTDE 110

Query:    70 EKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:   111 EKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146

 Score = 46 (21.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   235 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 292

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   293 EEQARKRQEEREKEAAEQAE 312


>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
            symbol:hmgb1b "high-mobility group box 1b"
            species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
            IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
            Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
        Length = 165

 Score = 106 (42.4 bits), Expect = 0.00056, P = 0.00056
 Identities = 27/92 (29%), Positives = 43/92 (46%)

Query:     2 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLILLFFQVTKLLGN 61
             +K     W  +S  EK  + D A+ DK RY  E+K Y         L +    + K LG 
Sbjct:    41 SKKCSERWKTMSAKEKGKFEDMAKQDKVRYEREMKNYIPPKGENPGLSI--GDIAKKLGE 98

Query:    62 EWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
              W+  S   K+ Y  +A   K++Y +++ +YR
Sbjct:    99 MWNSSSAEVKQPYEKKAAKLKEKYDKDIALYR 130


>UNIPROTKB|B4DFR4 [details] [associations]
            symbol:SMARCE1 "Smarce1 variant 5" species:9606 "Homo
            sapiens" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564
            "npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
            UniGene:Hs.740388 HGNC:HGNC:11109 HOVERGEN:HBG054558 EMBL:AC004585
            EMBL:AC073508 EMBL:EU327019 EMBL:AK294218 IPI:IPI01015775
            SMR:B4DFR4 STRING:B4DFR4 Ensembl:ENST00000544009
            Ensembl:ENST00000578044 Uniprot:B4DFR4
        Length = 341

 Score = 108 (43.1 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query:    50 LLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
             L  +++ K++G  W  L+  EK+ YL+  E +K  Y E +K Y  S AY +Y+  K
Sbjct:    21 LKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 76

 Score = 46 (21.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query:   248 MIDQNK-EIQLLRSKMKSLQEKRLKKNAYVYFFPFLSRPEQRNSTAPLQNEKSARETAQA 306
             M+ Q K E +LL+ + +  ++KR    +   F   L R         +  EK A E AQA
Sbjct:   165 MVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR--LCGLKVEVDMEKIAAEIAQA 222

Query:   307 EKGIRSAQATGIEPVSKSSE 326
             E+  R  Q    +  ++ +E
Sbjct:   223 EEQARKRQEEREKEAAEQAE 242


>ZFIN|ZDB-GENE-030131-341 [details] [associations]
            symbol:hmgb1a "high-mobility group box 1a"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
            GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
            HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
            UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
            ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
        Length = 205

 Score = 77 (32.2 bits), Expect = 0.00078, Sum P(2) = 0.00078
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query:    55 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 93
             V K LG  W+K+S  EK+ Y  +A   K++Y +++  YR
Sbjct:   124 VAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYR 162

 Score = 72 (30.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query:     2 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
             +K     W  +S  EK  + D A++DK RY  E+K Y
Sbjct:    41 SKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNY 77


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      382       351   0.00078  117 3  11 23  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  35
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  230 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.28u 0.07s 31.35t   Elapsed:  00:00:31
  Total cpu time:  31.28u 0.07s 31.35t   Elapsed:  00:00:36
  Start:  Thu Aug 15 11:58:55 2013   End:  Thu Aug 15 11:59:31 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Homo sapiens	7.0e-09
BLAST match view associations BLAST with Hmg20a Hmg20a Hmg20a high mobility group 20A	protein from Mus musculus	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A High-mobility group 20A	protein from Bos taurus	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A Uncharacterized protein	protein from Canis lupus familiaris	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A High mobility group protein 20A	protein from Homo sapiens	5.9e-08
BLAST match view associations BLAST with HMG20A HMG20A HMG20A High mobility group protein 20A	protein from Gallus gallus	6.0e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Bos taurus	6.2e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Homo sapiens	6.2e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	protein from Homo sapiens	6.5e-08
BLAST match view associations BLAST with Hmg20a Hmg20a Hmg20a high mobility group 20A	gene from Rattus norvegicus	7.1e-08
BLAST match view associations BLAST with HMG20B HMG20B HMG20B Uncharacterized protein	protein from Canis lupus familiaris	1.0e-07
BLAST match view associations BLAST with Hmg20b Hmg20b Hmg20b high mobility group 20B	protein from Mus musculus	1.9e-06
BLAST match view associations BLAST with Hmg20b Hmg20b Hmg20b high mobility group 20 B	gene from Rattus norvegicus	1.9e-06
BLAST match view associations BLAST with D4A2L7 D4A2L7 D4A2L7 Uncharacterized protein	protein from Rattus norvegicus	2.2e-06
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	1.5e-05
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	1.6e-05
BLAST match view associations BLAST with NHP6A NHP6A NHP6A	gene_product from Candida albicans	5.7e-05
BLAST match view associations BLAST with NHP6 NHP6 NHP6 Non-histone chromosomal protein 6	protein from Candida albicans SC5314	5.7e-05
BLAST match view associations BLAST with MAL8P1.72 MAL8P1.72 MAL8P1.72 high mobility group protein, putative	gene from Plasmodium falciparum	0.00012
BLAST match view associations BLAST with PfHMGB2 PfHMGB2 PfHMGB2 High mobility group protein	protein from Plasmodium falciparum 3D7	0.00012
BLAST match view associations BLAST with NHP6B NHP6B NHP6B High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	0.00012
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 Uncharacterized protein	protein from Gallus gallus	0.00032
BLAST match view associations BLAST with LOC100521398 LOC100521398 LOC100521398 Uncharacterized protein	protein from Sus scrofa	0.00033
BLAST match view associations BLAST with Smarce1 Smarce1 Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	gene from Rattus norvegicus	0.00038
BLAST match view associations BLAST with NHP6A NHP6A NHP6A High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	0.00042
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 Uncharacterized protein	protein from Canis lupus familiaris	0.00044
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	0.00044
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	protein from Homo sapiens	0.00050
BLAST match view associations BLAST with Smarce1 Smarce1 Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein from Mus musculus	0.00050
BLAST match view associations BLAST with SMARCE1 SMARCE1 SMARCE1 SMARCE1 protein	protein from Bos taurus	0.00052
BLAST match view associations BLAST with hmgb1b hmgb1b hmgb1b high-mobility group box 1b	gene_product from Danio rerio	0.00056
BLAST match view associations BLAST with hmgb1a hmgb1a hmgb1a high-mobility group box 1a	gene_product from Danio rerio	0.00078