RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1990
(382 letters)
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 49.9 bits (119), Expect = 1e-08
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKKIQH 112
+ +G+ W ++S +K+ Y AE +++Y+ L ++ KS + Q K +
Sbjct: 36 ERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKR 94
Score = 46.0 bits (109), Expect = 3e-07
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSY 47
+G+ W ++S +K+ Y AE +++Y+ L ++ KS + Q
Sbjct: 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDR 83
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 47.6 bits (113), Expect = 1e-07
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKKIQHH 113
+ L +W LS EK Y + + KK Y EL + +S + R +K+ +
Sbjct: 43 ERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNI 102
Score = 44.6 bits (105), Expect = 1e-06
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 45
L +W LS EK Y + + KK Y EL + +S +
Sbjct: 44 RMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEE 88
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 46.8 bits (111), Expect = 2e-07
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 97
F QV K LG +W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 48 FGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
Score = 46.0 bits (109), Expect = 2e-07
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 43
V K LG +W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 51 VGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 45.2 bits (107), Expect = 4e-07
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVK 108
+ ++LG W LS E+ Y + A +++ + + + D Y +RKR K
Sbjct: 30 SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 38.7 bits (90), Expect = 9e-05
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQS 46
+ ++LG W LS E+ Y + A +++ + + + D Y
Sbjct: 33 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 78
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 42.9 bits (101), Expect = 2e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 94
V K LG W+ + +K+ Y +A K++Y +++ YR
Sbjct: 30 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 72
Score = 41.8 bits (98), Expect = 5e-06
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 40
V K LG W+ + +K+ Y +A K++Y +++ YR
Sbjct: 33 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 72
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 42.4 bits (100), Expect = 2e-06
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 151 DATDEIDEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHFQAVEQ 196
D E D + C C ++F N + H + H + ++Q
Sbjct: 1 DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ 46
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 41.7 bits (98), Expect = 7e-06
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
+++K LG +W L+ EK + A+ + +RE+ Y+ ++ + K
Sbjct: 32 NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK 85
Score = 39.8 bits (93), Expect = 3e-05
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
++K LG +W L+ EK + A+ + +RE+ Y+
Sbjct: 35 ISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 40.2 bits (94), Expect = 2e-05
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
+ +K W +S EK + D A+ DK RY E+K Y
Sbjct: 33 EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71
Score = 39.5 bits (92), Expect = 3e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
+K W +S EK + D A+ DK RY E+K Y
Sbjct: 34 FSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 40.2 bits (94), Expect = 2e-05
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 54 QVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 95
+V K G W ++ +K + +A K Y +K + +
Sbjct: 33 EVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAVKEFEAN 72
Score = 39.8 bits (93), Expect = 3e-05
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
V K G W ++ +K + +A K Y +K + +
Sbjct: 34 VAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAVKEFEAN 72
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 39.9 bits (93), Expect = 4e-05
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 105
+TK+L ++ +L +K Y+ + +K+ + L +R+ +K
Sbjct: 38 NLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
Score = 38.8 bits (90), Expect = 8e-05
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 40
+TK+L ++ +L +K Y+ + +K+ + L +R+
Sbjct: 41 LTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 37.9 bits (88), Expect = 1e-04
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 29 KRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 88
K R ++ Q++ + ++K+LG+ W ++ EK+ Y + K++ E+
Sbjct: 15 KDERRKIL--------QAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEK 66
Score = 37.1 bits (86), Expect = 2e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 34
++K+LG+ W ++ EK+ Y + K++ E+
Sbjct: 33 ISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEK 66
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 38.2 bits (89), Expect = 1e-04
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 29 KRYREELKVYRKSDAYQSYLILLFFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 88
+ R ++ Q + +++K LG EW LS EK+ ++D A+ + + +E
Sbjct: 15 RGQRRKMA--------QENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKE 66
Query: 89 LKVYRKSDAYQSYLRRKRVK 108
Y+ Y R++ K
Sbjct: 67 HPDYK-------YRPRRKTK 79
Score = 35.9 bits (83), Expect = 7e-04
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 41
++K LG EW LS EK+ ++D A+ + + +E Y+
Sbjct: 33 ISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 37.6 bits (87), Expect = 2e-04
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 52 FFQVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 92
++T+LL W+ LS +K Y R K + +
Sbjct: 48 ESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88
Score = 37.2 bits (86), Expect = 3e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 1 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 38
+T+LL W+ LS +K Y R K + +
Sbjct: 51 LTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 31.7 bits (72), Expect = 0.013
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 167 YCRVCDQWFT--TLHNKREHLNGRQHFQAVE 195
YC CD + T + ++ H +GR+H + V+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ)
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 55
Score = 28.3 bits (63), Expect = 0.20
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 157 DEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQH 190
+ + ++ C VC+ F++ H G+ H
Sbjct: 13 EISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTH 46
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 27.3 bits (60), Expect = 1.4
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 12/113 (10%)
Query: 136 GGLQANGTEESDIATDATDEIDEEEE--------DNEELYCRVCDQWFTTLHNKREHLNG 187
G LQ N + + ++ + + + V +FT L+
Sbjct: 1 GSLQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSY 60
Query: 188 RQHFQAVEQSGHLAVNESNSCLSLDESSLDAAPSRTLPNQLPPSP-PPLTMED 239
+ G L + E + L + + P LP LPP+ P + D
Sbjct: 61 IWELSDADCDGALTLPEFCAAFHLIVARKNGYP---LPEGLPPTLQPEFIVTD 110
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
influenzae [TaxId: 727]}
Length = 170
Score = 27.1 bits (60), Expect = 2.6
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 144 EESDIATDATDEIDEEEEDNEEL--YCRVCDQW-FTTLH 179
+ + D D +E E EE+ Y R ++ +
Sbjct: 132 DICQLGYDEDDNEEELAEALEEIIEYVRTIAMLFYSHFN 170
>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 358
Score = 26.7 bits (58), Expect = 5.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 307 EKGIRSAQATGIEPVSKSSEDFALNR 332
E G R+A ATG ++S+ NR
Sbjct: 313 ESGTRAAAATGTIFTFRNSQRLVFNR 338
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 25.6 bits (56), Expect = 6.7
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 155 EIDEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHF 191
E + C CD+ F + H F
Sbjct: 5 SSGEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQF 41
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 24.7 bits (53), Expect = 7.6
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 63 WSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVK 108
W+ + EK +++ +A D+KRY EL R A + K+++
Sbjct: 41 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATN--SSKKLE 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.366
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,346,397
Number of extensions: 60423
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 36
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.2 bits)