BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1991
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 77/88 (87%)
Query: 279 RKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
++ HTC + GCGKTYTKSSHLKAHLRTHTGEKPY C W GCGWKFARSDELTRH+RKH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG RPFQC C+RAFSRSDHL+LHMKRH
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 76/87 (87%)
Query: 280 KIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
+ HTC + GCGKTYTKSSHLKAHLRTHTGEKPY C W GCGWKFARSDELTRH+RKHT
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 340 GDRPFQCTLCERAFSRSDHLSLHMKRH 366
G RPFQC C+RAFSRSDHL+LHMKRH
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 75/87 (86%)
Query: 280 KIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
K +H C + GC K YTKSSHLKAHLRTHTGEKPY+C W+GC W+FARSDELTRH+RKHT
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 340 GDRPFQCTLCERAFSRSDHLSLHMKRH 366
G +PFQC +C R+FSRSDHL+LHMKRH
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ 345
C++ GC K Y K SHL+ H R HTGEKPYQC +K C +F+RSD+L RH R+HTG +PFQ
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 346 CTLCERAFSRSDHLSLHMKRH 366
C C+R FSRSDHL H + H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTH 89
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH 334
C + +++S HLK H RTHTGEKP+ C W C KFARSDEL RH
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTL--CERAFSRSDHLSLHMKRH 366
++P+ C + GC ++ + L H RKHTG++P+QC CER FSRSD L H +RH
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 47/59 (79%)
Query: 280 KIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
+I H CSH GCGKTY KSSHLKAH RTHTGEKP+ C WKGC +FARSDEL+RH R H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++++SS+L+ H RTHTGEKPY+C CG F++S +L +H R HTG++P++C C
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGEKPYKCPECG 67
Query: 351 RAFSRSDHLSLHMKRH 366
++FSRSDHLS H + H
Sbjct: 68 KSFSRSDHLSRHQRTH 83
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CGK++++S HL H RTH +K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++++ +HL+AH RTHTGEKPY+C CG F+R D L H R HTG++P++C C
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 351 RAFSRSDHLSLHMKRH 366
++FSR D L++H + H
Sbjct: 169 KSFSRRDALNVHQRTH 184
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++++S HL H RTHTGEKPY+C CG F+ +LTRH R HTG++P++C C
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPECG 84
Query: 351 RAFSRSDHLSLHMKRH 366
++FS+ +L H + H
Sbjct: 85 KSFSQRANLRAHQRTH 100
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK+++ L H RTHTGEKPY+C CG F++ L H R HTG++P+ C C
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPECG 112
Query: 351 RAFSRSDHLSLHMKRH 366
++FS+ HL H + H
Sbjct: 113 KSFSQLAHLRAHQRTH 128
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 310 GEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
GEKPY C CG F+RSD L H R HTG++P++C C ++FS L+ H + H
Sbjct: 18 GEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
CGK++++ +L H RTHTGEKPY+C CG F+R D L H R HTG +
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKK 188
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + ++ SS+L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F+ S LTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++S+ L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 6 ACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F+RS ELTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++S+ L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 6 ACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F+RS +LTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F+RSDELTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 5 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F+RSDELTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 56
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F+RSDELTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HTG++PF
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 345 QCTLCERAFSRSDHLSLHMKRH 366
C +C R F+RSD H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F++S LTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+PY C + C +F+RSDELTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 275 NWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH 334
N+ K+ + C C + +++S L H+R HTG+KP+QC + C F+RSD LT H
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTH 68
Query: 335 FRKHT 339
R HT
Sbjct: 69 IRTHT 73
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Query: 273 RQNWSRRKII------MHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFA 326
R N + RK + +H C+ CGK + +SS LK H HTGEKP+QC ++GCG +F+
Sbjct: 18 RDNSAMRKHLHTHGPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Query: 327 RSDELTRHFRKHTGDRPFQCTL--CERAFSRSDHLSLHMKRH 366
L H R HTGDRP+ C C + F++S +L H+ H
Sbjct: 76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQ 315
C +GC K + +S++LK+H+ TH K Q
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 292 GKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTL--C 349
GK++ L H+R HTGEKP+ C + GCG FARS+ L H R HTG++PF+C C
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGC 128
Query: 350 ERAFSRSDHLSLHMKRH 366
+R F+ S HM H
Sbjct: 129 DRRFANSSDRKKHMHVH 145
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
C GCGK + +S +LK H RTHTGEKP++C ++GC +FA S + +H HT D+
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK +++ LK H+R HTG KPY+C K C + A S L +H R H+ +RPF+C +C
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQICP 71
Query: 351 RAFSRSDHLSLHMKRH 366
A S L++H++ H
Sbjct: 72 YASRNSSQLTVHLRSH 87
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 313 PYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
P++C + CG F+R D+L H R HTG +P++C C+ A + S L+ H++ H
Sbjct: 8 PHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG--DRPFQCTL 348
CGK + HL H +H+GEKPY C CG +F R D ++ H R H G +P+ C
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 349 CERAFSRSDHLSLHMKR 365
C + FSR DHL+ H+K+
Sbjct: 71 CGKGFSRPDHLNGHIKQ 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 321 CGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
CG F L RH H+G++P+ C +C F R D +S H++ H
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++ ++L H+R HTG+KP+QC + C F++ L H R HTG++PF
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 345 QCTLCERAFS----RSDHLSLHMK 364
C +C R F+ R+ H +H++
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLR 87
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F++ L H R HTG +PFQC +C R FS+ L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C C + +++ ++L H+R HTG+KP+QC + C F++ L +H R HTG++PF
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 345 QCTLCERAFS----RSDHLSLHMK 364
C +C R F+ R H +H++
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLR 87
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F++ L H R HTG +PFQC +C R FS+ L+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++ +SS L HL H+ +PY C + CG +F + ++ +H HTG++P +C +C
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 64
Query: 351 RAFSRSDHLSLHMKRH 366
+AFS+S +L H ++H
Sbjct: 65 KAFSQSSNLITHSRKH 80
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
CGK + + S +K H HTGEKP++C + CG F++S L H RKHTG
Sbjct: 35 CGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 319 KGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
K CG F RS L+ H H+ RP+ C C + F H MK+H
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF----HQKSDMKKH 48
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH-FRKHTGDR 342
H C+ GC K+Y++ +LK HLR+HTGEKPY C +GC F+ + + +H R H+ ++
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 343 PFQCTL--CERAFSRSDHLSLHMK 364
P+ C L C + ++ L H+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 301 LKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC--TLCERAFSRSDH 358
L H+R HTGEKP++C ++GC ++R + L H R HTG++P+ C C +AFS +
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 359 LSLHMKR 365
+ H R
Sbjct: 115 RAKHQNR 121
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRT---HTGEKPYQCGWKGCGWK---FARSDELTRHFRKHT 339
C +GC + + L H+ + H K + C W GC + F L H R+HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 340 GDRPFQCTL--CERAFSRSDHLSLHMKRH 366
G++P +CT C +++SR ++L H++ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ 345
CS CG Y K+ L+AHL HTGEKP+ C +GC F LTRH HTG++ F
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 65
Query: 346 C--TLCERAFSRSDHLSLHMKR 365
C C+ F+ ++ H R
Sbjct: 66 CDSDGCDLRFTTKANMKKHFNR 87
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT--LCERAFSRSDHLSLHMKRH 366
K Y C + CG + ++ +L H KHTG++PF C CE+ F+ HL+ H H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ 345
CS CG Y K+ L+AHL HTGEKP+ C +GC F LTRH HTG++ F
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 74
Query: 346 C--TLCERAFSRSDHLSLHMKR 365
C C+ F+ ++ H R
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNR 96
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 241 HIHPYYQTHHHTQIFQTPSITIKSSLLSKPKRRQNWSRR---KIIMHTCSHNGCGKTYTK 297
H+ + TH + F S +K +++++R KI ++ C CGK + K
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 298 SSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
+ LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 34/115 (29%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK-------- 337
C GC K +T HL H THTGEK + C GC +F + +HF +
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 338 ------------------------HTGDRPFQC--TLCERAFSRSDHLSLHMKRH 366
HT P++C C++ FS L H K H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT--LCERAFSRSDHLSLHMKRH 366
K Y C + CG + ++ +L H KHTG++PF C CE+ F+ HL+ H H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLH 362
KP+QC + C F+RSD LT H R HTG++PF C +C R F+RSD H
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH 334
C + +++S HL H+RTHTGEKP+ C CG KFARSDE RH
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRH 50
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CG+ +TKS +L H RTHT E+PY C C F R D L H H+ ++PF+C C
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 351 RAFSRSDHLSLHMKRH 366
+ F +S L++H H
Sbjct: 81 KGFCQSRTLAVHKTLH 96
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 319 KGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLH 362
K CG F +S L H R HT +RP+ C +C +AF R DHL H
Sbjct: 21 KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++T S H+ H G +PY CG CG KF L H + HTG +P++C +C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 351 RAFSRSDHLSLHM 363
+ F D H+
Sbjct: 73 KRFMWRDSFHRHV 85
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G+K Y C CG F + RH H G RP+ C +C + F HL HMK H
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP+ C W GCGW+F+RSDEL+RH R H+G +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKP 313
C+ GCG +++S L H R+H+G KP
Sbjct: 15 CTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 275 NWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH 334
W +R+ + C + CGK+++ SS L H RTHTGEKPY+C CG F + L H
Sbjct: 10 EWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGH 65
Query: 335 FRKHTGDRP 343
R HTG P
Sbjct: 66 HRVHTGSGP 74
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 321 CGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
CG F+ S +L++H R HTG++P++C C +AF + HL H + H
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
EKPY C CG F+RS L +H R HTG++P++C C +AFS++ L H + H
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
CGK +++SS L H R HTGEKPY+C CG F+++ L H R HT
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHT 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP---FQCT 347
C K + +LK H R HTGEKP++C CG + R + L H ++ +R F C+
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Query: 348 LCERAFSRSDHLSLHMKRH 366
+C+ F R L LHM H
Sbjct: 71 VCQETFRRRMELRLHMVSH 89
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 321 CGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
C FAR + L RH+R HT ++P+ C LC RAF+R D L H ++
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK-HTGD 341
C + + + HLK H R+HT EKPY CG C F R D L RH +K H+G+
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C +C RAF+R +HL H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 336 RKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
R TG +PFQC C+R+FSRSDHL+LH KRH
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
R TG KP+QC C F+RSD L H ++H
Sbjct: 4 RGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 283 MHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
M+ C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 314 YQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC--TLCERAFSRSDHLSLHMKRH 366
Y C ++ CG F + ++L H HT P++C C++ FS L H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 275 NWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTG---EKPYQCGWKGCGW 323
+S + + + C H GC K ++ S LK H + H G +K C + G W
Sbjct: 23 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 74
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 283 MHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
M+ C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 314 YQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC--TLCERAFSRSDHLSLHMKRH 366
Y C ++ CG F + ++L H HT P++C C++ FS L H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 275 NWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTG---EKPYQCGWKGCGW 323
+S + + + C H GC K ++ S LK H + H G +K C + G W
Sbjct: 23 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 74
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 2/30 (6%)
Query: 339 TGDRPFQCTL--CERAFSRSDHLSLHMKRH 366
TG +PFQCT C+R+FSRSDHL+LH KRH
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
TG KP+QC W C F+RSD L H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
C ++Y + L+ H H+ EK Y C + C F ++ T+H HTG+R +QC C
Sbjct: 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLACG 85
Query: 351 RAFSRSDHLSLHMK 364
++F +S H+K
Sbjct: 86 KSFINYQFMSSHIK 99
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +PFQC C+ +FSRSDHL+LH KRH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
TG KP+QC C W F+RSD L H ++H
Sbjct: 3 TGIKPFQC--PDCDWSFSRSDHLALHRKRH 30
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
H C GCGK Y K+SHL+AHLR HTGE+
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+K + C +GCG + ++ L H R HTG+R
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C ++ +L +H HTGEKPY+C CG +F R L H R H+G++P
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+KPY+C C F L H HTG++P++C +C F+R +L H + H
Sbjct: 15 DKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CG + + ++LK H R H+GEKP
Sbjct: 49 NICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
CGK + + +L HLRTHTGEKPY+C + C + A+ L H +H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 310 GEKPYQCGWKGCGWKFARSDE-LTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G +C + CG KF RS+ L H R HTG++P++C CE A ++ L H++RH
Sbjct: 1 GSSSRECSY--CG-KFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+P+ C W CG +F RSDEL RH R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEK 312
C+ + CGK +T+S L+ H RTHTGEK
Sbjct: 5 CTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRH-FRKHTGD-RPFQCTLCERAFSRSDHLSLHM 363
RTH+GEKPY+C C +F +S + H +KHT + F C C+ +R L +H+
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 364 KR 365
++
Sbjct: 66 RK 67
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 321 CGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMK 364
CG + + L +H R HT RP+ CT C +F +L+ HMK
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFR 336
CG K S LK H+RTHT +PY C + C + F LT+H +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMK 50
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+PFQC C+R FSRSDHL H + H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTH 25
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
KP+QC K C KF+RSD L H R HTG++
Sbjct: 1 KPFQC--KTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
C + +++S HLK H RTHTGEK
Sbjct: 8 CQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+CG CG FA+ LT+H R HTG++P
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + + ++L H R HTGEKP
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
N CGKTY +S L H R H G +P C CG F E+ RH + H
Sbjct: 8 NFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+P+ C + CG + + L+RH R H G RP C C + F ++ H+K H
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGKT+++ S L AH RTHTGEKP
Sbjct: 16 NECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C CG F++ L+ H R HTG++P
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C + CG F S EL RH R HTG++P
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + S+ L H R HTGEKP
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +++SSHL+ H R HTGEKP
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EK Y+C CG +F++S L H R HTG++P
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK +T++SHL H R HTGEKP
Sbjct: 16 NECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F ++ LT H+R HTG++P
Sbjct: 10 EKPYKC--NECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +T++SHL +H R HTGEKP
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP+QC + CG +F ++ L H R HTG++P
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++PFQC C + F+++ HL H + H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F+++ +L RH R HTG++P
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK ++++S L H R HTGEKP
Sbjct: 16 NECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C C +AFS++ L+ H + H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKP 313
H C N CGK++ +S+HL H R HTGEKP
Sbjct: 13 HKC--NECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
E+P++C CG F +S L +H R HTG++P
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
KPYQC CG F+++ +L RH R HTG++P
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK ++++S L H R HTGEKP
Sbjct: 16 NECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+P+QC C +AFS++ L+ H + H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK++ + SHL H R HTGEKP
Sbjct: 16 NECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C CG F + L RH R HTG++P
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+GEKPYQC K CG F++ L H R HTG P
Sbjct: 6 SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+QC C ++FS+ L++H + H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + ++ HL +HLR HTGEKP
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP++C K CG F ++ L H R HTG++P
Sbjct: 10 EKPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++PF+C C +AF ++ HL+ H++ H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR----PFQCTLCERAFSRSDHLSL 361
RTHTGEKPY C C F + L HF+++ F C+ C + F+R + ++
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 362 HM 363
H
Sbjct: 66 HA 67
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 336 RKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
R HTG++P+ C+ C++ F + L +H KR+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C K CG F+++ L +H R HTG++P
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +++++HL H R HTGEKP
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C C +AFS++ HL H + H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++PF C+ CE+AFS +L +H + H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK +T++SHL H R HTG KP
Sbjct: 16 NECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F ++ L RH R HTG +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N C KT+T+SS L H R HTGEKP
Sbjct: 16 NECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK +T++SHL H R HTG KP
Sbjct: 16 NECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F ++ L H R HTG +P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKP 40
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C C + F+++ HL+ H + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK +T++SHL H HTGEKP
Sbjct: 16 NECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F ++ L RH HTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + S+L H+RTHTGEKP
Sbjct: 16 CGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G +P+ C+ C +AF +L +HM+ H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+G KPY C CG F L H R HTG++P
Sbjct: 6 SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK +T++SHL H HTGEKP
Sbjct: 16 NECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+KPY+C CG F ++ L RH HTG++P
Sbjct: 10 KKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +T++S L +H R HTGEKP
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP++C + CG +F ++ +L H R HTG++P
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK ++ S+L H+RTH+GEKP
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P+ C+ C +AFS +L +HM+ H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C CG F+ L H R H+G++P
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK+++ SS L H R HTGEKP
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP++C CG F+ S +L H R HTG++P
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++PF+C C ++FS S L+ H + H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK +T++SHL H HTGEKP
Sbjct: 16 NECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F ++ L RH HTG++P
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK+Y + HL H R HTGEKP
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP++CG CG + + LT+H R HTG++P
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
+GEKPY C CG +F R D ++ H R H G
Sbjct: 6 SGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C +C F R D +S H++ H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CGK +T++S L AH+R HTGEK
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+P QC +C +AF+++ L H+++H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK++TK S L H + HTGEKP
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F + +L H + HTG++P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C++C ++F++ L +H + H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CGK +T S +LK HLR H+GEK
Sbjct: 8 CGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CG+ +T SHL H R HTGEKP
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C +C +AF++ HL+ H K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
C K +T+ +HL H +THTGEKP
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C K C F + L +H + HTG++P
Sbjct: 10 EKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK ++++S L H + HTGEKP
Sbjct: 16 NECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EK Y+C CG F+R+ +L++H + HTG++P
Sbjct: 10 EKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGKT+ +SS L H R H+GEKP
Sbjct: 14 NECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+G+KP C CG F +S L++H R H+G++P
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
+GE PY+C CG F R D+L H R H G+
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G+ P++C+ C +AF+R D L H + H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + S L+ H R HTGEKP
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C + CG F +L H R HTG++P
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F + L+RH R HTG++P
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK + +S+L H R HTGEKP
Sbjct: 16 NECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK++ K S L H R HTGE P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F + +L H R HTG+ P
Sbjct: 10 EKPYEC--SDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +T+ S L H + HTGEKP
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F+CT C +AF+R LS+H K H
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + ++SHL H HTGEKP
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F R+ L RH HTG++P
Sbjct: 10 EKPYKC--HECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
+RPF+C C + F R HL+ H++ H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEK 312
N CGK + + SHL HLR H+ EK
Sbjct: 16 NECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F + T+H R HTG RP
Sbjct: 10 EKPYKC--MECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 286 CSHNGCGKTYTKSSHLKAHLR-THTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C GCG+ ++ +L H + H +K + C CG F L H + H+ R +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 345 QCTL 348
C
Sbjct: 70 ICEF 73
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKG 320
+C CGK++ HLK H++ H+ + Y C + G
Sbjct: 40 SCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFR-KHTGDRPFQCT--LCERAFSRSDHLSLHMKR 365
+G C + GCG F+ L H + +H + F C C ++F+ HL HMK
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 366 H 366
H
Sbjct: 63 H 63
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F++ L H R HTG P
Sbjct: 9 EKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +++ L H+R HTG P
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C C +AFS+ L +H++ H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
+RP+ C C + F R HL H+KRH
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
+PF+C+LCE A +L HM RH
Sbjct: 7 GKPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRK-HTGDRPFQCTL 348
KPY C + CG F+R D L H ++ HT +RP +C +
Sbjct: 11 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKR 365
+P+ C C + FSR DHL+ H+K+
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQ 34
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 291 CGKTYTKSSHLKAHLR-THTGEKPYQC 316
CGK +++ HL H++ HT E+P++C
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C + CG F S L +H H+G+RP
Sbjct: 10 EKPYKC--QVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + SSHL H H+GE+P
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + + S L H R HTGEKP
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
E+ Y+C CG FAR L H R HTG++P
Sbjct: 10 ERHYECSE--CGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P++CT C +AF L +H + H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
+GEKPY+C CG F +L H R HTG+
Sbjct: 6 SGEKPYEC--TDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
+RP+ CT+C +AF+ +L H K H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
E+PY C CG F L +H + HTG++P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F R L H R HTG RP
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + + +HL H R HTG +P
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C+ C +AF R HL+ H + H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIH 35
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGE 311
N CGK + S+HL HLR HT E
Sbjct: 16 NVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P+ C +C +AF S HL+ H++ H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHT 339
EKPY C CG F S L +H R HT
Sbjct: 10 EKPYSCNV--CGKAFVLSAHLNQHLRVHT 36
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C C +AF++S LS+H + H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
+GEKPY C + CG F +S L+ H R HTG+
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 291 CGKTYTKSSHLKAHLRTHTGE 311
CGK +T+SS L H R HTGE
Sbjct: 16 CGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +++ L +H RTH GEKP
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
E PY+C CG F+R +L H R H G++P
Sbjct: 10 ENPYEC--HECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C++C +AFS LS+H + H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F+ L+ H R H+G +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F L H + HTG++P
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKP 313
H CS CGK + ++S+ H R HTGEKP
Sbjct: 13 HRCSD--CGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + S L H R+HTGEKP
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 307 THTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
+ T EKPY+C CG F R+ +L H R H+G+
Sbjct: 6 SGTREKPYECSE--CGKAFIRNSQLIVHQRTHSGE 38
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
T ++P++C+ C +AF R+ L +H + H
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 291 CGKTYTKSSHLKAHLRTHTGE 311
CGK + ++S L H RTH+GE
Sbjct: 18 CGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F+ LT H HTG +P
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ CT C +AF R H H + H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
+GEKPY C CG F R H R HTG+
Sbjct: 6 SGEKPYVC--TECGKAFIRKSHFITHERIHTGE 36
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 291 CGKTYTKSSHLKAHLRTHTGE 311
CGK + + SH H R HTGE
Sbjct: 16 CGKAFIRKSHFITHERIHTGE 36
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCG 317
CGK + HL H +H+GEKPY G
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKPYSSG 44
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+ F C C + F RSDHLS H+K H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++PF+C+ C++AF+ +L +H + H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
C K + S+L H RTHTGEKP
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGKT++ S+HL H H GE P
Sbjct: 16 NECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
T + PF+C C + FS S HLS H H
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIH 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 331 LTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
L H R H DRPF+C C + +LS HMK+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 301 LKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
L+ H R H ++P++C + C + + L++H +K GD
Sbjct: 25 LRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EK Y C K CG F+R+ L +H R H+G++P
Sbjct: 10 EKLYNC--KECGKSFSRAPCLLKHERLHSGEKP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK+++++ L H R H+GEKP
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK+++ +S L H R HTGE P
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP++C + CG F+ + +L H R HTG+ P
Sbjct: 10 EKPHEC--RECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +++ S L H + HTGEKP
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP++C CG F+R L H + HTG++P
Sbjct: 10 EKPFKC--VECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++PF+C C + FSR L++H K H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
+ P++C C + FSR D L H K H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
E PY+C CG F+R D+L H + H+G
Sbjct: 10 ENPYECCE--CGKVFSRKDQLVSHQKTHSG 37
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGE 311
N CGK + S+L H RTHTGE
Sbjct: 16 NECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK + S L H TH+GEKP
Sbjct: 16 NECGKAFRARSSLAIHQATHSGEKP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 343 PFQCTLCERAFSRSDHLSLHMKRH 366
F C +C RAF+R +HL H + H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK +T ++L H + HTGE+P
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK + + S L H R H GEKP
Sbjct: 18 CGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C K CG F + L +H R H+G++P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK++ +S L H R H+GEKP
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKP 40
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2, Nmr,
20 Structures
Length = 38
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
+ +KP+ C GCG +F D L H KH
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C CG F LT H HTG++P
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK + S+L H HTGEKP
Sbjct: 16 NECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CGK ++ L H R HTGEKP
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEK 312
N CGK ++ S+L H R HTGEK
Sbjct: 14 NECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+GEKPY C CG F+ L H R HTG++
Sbjct: 6 SGEKPYGCNE--CGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+GEKPY C CG F +L H HTG +P
Sbjct: 6 SGEKPYSCNE--CGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKH 338
++PY C GC F R+ +L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
EKPY+C CG F R L H + HTG+R
Sbjct: 10 EKPYKC--SDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C+ C +AF+R L +H + H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CGK +T+ S L H ++HTGE+
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGER 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C C F+ LT+H R H+G++P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY C + CG +F L H R HTG P
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C C + F RSDHL+LH+ H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G RPF C +C AF+ + + H+K H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C C+ FS ++ L H K H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKP 313
N CGK ++ S L H HTGEKP
Sbjct: 16 NECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
KPY C CG F+ LT H HTG++P
Sbjct: 11 KPYMCNE--CGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
KPYQC CG F+ S LT+H+ HT ++P
Sbjct: 11 KPYQC--SECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
C KT++ S L H R+HTG KP
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 283 MHTCSHNGCGKTYTKSSHLKAHLRTHTGE 311
+H C N CGK ++ S L H R HTGE
Sbjct: 10 LHEC--NNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKRH 366
++P++C C++AF+ +L +H + H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGD 341
+G+KPY C CG F +L H R HTG+
Sbjct: 6 SGQKPYVCNE--CGKAFGLKSQLIIHERIHTGE 36
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
CG + + +HL+AH+ HTG P
Sbjct: 17 CGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKPY+C + CG +F + L H HTG P
Sbjct: 9 EKPYKC--ETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C C + F RSDHLS H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFR-KHTGDRP 343
+KPY+C CG F ++ L RH+R HTG++P
Sbjct: 10 KKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
EKP+QC K CG F+ S L +H R H P
Sbjct: 10 EKPFQC--KECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEK 312
C+H CGK++ +L H R HTGEK
Sbjct: 15 CTH--CGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CGK++T S L+ H + HTGE+
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGER 39
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 313 PYQCGWKGCGWKFARSDELTRHFRKHTG 340
P+QC + CG +F+ L H + HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+G++ Y+C + CG F + LT H R HTG P
Sbjct: 6 SGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,965,689
Number of Sequences: 62578
Number of extensions: 499707
Number of successful extensions: 2239
Number of sequences better than 100.0: 179
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1614
Number of HSP's gapped (non-prelim): 484
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)