RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1991
(366 letters)
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 168 bits (427), Expect = 1e-52
Identities = 71/83 (85%), Positives = 75/83 (90%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
HTC + GCGKTYTKSSHLKAHLRTHTGEKPY C W GCGWKFARSDELTRH+RKHTG RP
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
FQC C+RAFSRSDHL+LHMKRH
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 38.3 bits (90), Expect = 3e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 337 KHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
K T C + +++S HL H++ H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTH 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 168 bits (427), Expect = 2e-52
Identities = 65/94 (69%), Positives = 75/94 (79%)
Query: 273 RQNWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELT 332
K +H C + GC K YTKSSHLKAHLRTHTGEKPY+C W+GC W+FARSDELT
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
RH+RKHTG +PFQC +C R+FSRSDHL+LHMKRH
Sbjct: 65 RHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 77.3 bits (191), Expect = 6e-18
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
C+ GC + +S L H R HTG KP+QC C F+RSD L H ++H
Sbjct: 48 CTWEGCDWRFARSDELTRHYRKHTGAKPFQC--GVCNRSFSRSDHLALHMKRHQ 99
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 138 bits (351), Expect = 2e-41
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 283 MHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
M+ C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 343 PFQCTLCERAFSRSDHLSLHMKR 365
+ C H+
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 127 bits (321), Expect = 6e-37
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 297 KSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRS 356
++L ++ +PY C + C +F+RSDELTRH R HTG +PFQC +C R FSRS
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 357 DHLSLHMKRH 366
DHL+ H++ H
Sbjct: 63 DHLTTHIRTH 72
Score = 74.3 bits (183), Expect = 4e-17
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
C C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HT
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 126 bits (318), Expect = 5e-36
Identities = 48/83 (57%), Positives = 59/83 (71%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C++ GC K Y K SHL+ H R HTGEKPYQC +K C +F+RSD+L RH R+HTG +P
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
FQC C+R FSRSDHL H + H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTH 89
Score = 108 bits (272), Expect = 3e-29
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+ C C + +++S LK H R HTG KP+QC K C KF+RSD L H R HTG++P
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 344 FQCTL--CERAFSRSDHLSLHMKRH 366
F C C++ F+RSD L H H
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 79.9 bits (198), Expect = 1e-18
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTL--CERAFSRSDHLSLHMKRH 366
+ ++P+ C + GC ++ + L H RKHTG++P+QC CER FSRSD L H +RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 114 bits (288), Expect = 3e-32
Identities = 47/75 (62%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 264 SSLLSKPKRRQNWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGW 323
SS S P+ + R H CSH GCGKTY KSSHLKAH RTHTGEKP+ C WKGC
Sbjct: 2 SSGSSGPQIDSSRIR----SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCER 57
Query: 324 KFARSDELTRHFRKH 338
+FARSDEL+RH R H
Sbjct: 58 RFARSDELSRHRRTH 72
Score = 89.0 bits (221), Expect = 1e-22
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 298 SSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTL--CERAFSR 355
SS + + + C GCG + +S L H R HTG++PF C+ CER F+R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 356 SDHLSLHMKRH 366
SD LS H + H
Sbjct: 62 SDELSRHRRTH 72
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 112 bits (283), Expect = 4e-31
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+ C C + +++S L H+R HTG+KP+QC + C F+RSD LT H R HTG++P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C +C R F+RSD H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 80.2 bits (199), Expect = 4e-19
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
E+PY C + C +F++S LTRH R HTG +PFQC +C R FSRSDHL+ H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 75.2 bits (186), Expect = 2e-17
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
C + +++S HL H+RTHTGEKP+ C CG KFARSDE RH + H
Sbjct: 40 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLR 87
Score = 42.8 bits (102), Expect = 8e-06
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CG+ + +S K H + H +K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 107 bits (270), Expect = 7e-29
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
H C+ CGK + +SS LK H HTGEKP+QC ++GCG +F+ L H R HTGDRP
Sbjct: 35 HVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 344 FQCTL--CERAFSRSDHLSLHMKRH 366
+ C C + F++S +L H+ H
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 101 bits (254), Expect = 1e-26
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C H GC K + +S ++ HL TH G + + C CG F S +L RH HTG++P
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKP 62
Query: 344 FQCTL--CERAFSRSDHLSLHMKRH 366
FQCT C + FS +L H++ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 88.7 bits (221), Expect = 7e-22
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C+ GCGK ++ +L+ H+R HTG++PY C + GC KFA+S L H H +
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 344 FQ 345
Q
Sbjct: 123 NQ 124
Score = 66.4 bits (163), Expect = 9e-14
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ C KGC F + + +H H G R C C +AF S L H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 107 bits (269), Expect = 6e-28
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ 345
CS CG Y K+ L+AHL HTGEKP+ C +GC F LTRH HTG++ F
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 74
Query: 346 CT--LCERAFSRSDHLSLHMKRH 366
C C+ F+ ++ H R
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRF 97
Score = 99.2 bits (248), Expect = 5e-25
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 283 MHT------CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFR 336
HT C GC K +T HL H THTGEK + C GC +F + +HF
Sbjct: 36 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 337 KHTG--DRPFQCTL--CERAFSRSDHLSLHMKRH 366
+ + C C +AF + + L +H H
Sbjct: 96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 97.3 bits (243), Expect = 3e-24
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEK--PYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C +GC +T +++K H K Y C ++ CG F + ++L H HT P
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134
Query: 344 FQCT--LCERAFSRSDHLSLHMKRH 366
++C C++ FS L H K H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 92.7 bits (231), Expect = 1e-22
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ 345
C CGK + K + LK H +HT + PY+C +GC +F+ L RH + H G +
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 166
Query: 346 CTLCERAFSRSDHLSLHMKR 365
C H+
Sbjct: 167 DDSCSFVGKTWTLYLKHVAE 186
Score = 82.6 bits (205), Expect = 6e-19
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT--LCERAFSRSDHLS 360
K Y C + CG + ++ +L H KHTG++PF C CE+ F+ HL+
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 361 LHMKRH 366
H H
Sbjct: 62 RHSLTH 67
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 106 bits (266), Expect = 7e-28
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH-FRKHTGDR 342
H C+ GC K+Y++ +LK HLR+HTGEKPY C +GC F+ + + +H R H+ ++
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 343 PFQCTL--CERAFSRSDHLSLHMKRH 366
P+ C L C + ++ L H+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 101 bits (255), Expect = 2e-26
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ 345
+ + + L H+R HTGEKP++C ++GC ++R + L H R HTG++P+
Sbjct: 40 GGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM 99
Query: 346 CT--LCERAFSRSDHLSLHMKR 365
C C +AFS + + H R
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNR 121
Score = 94.2 bits (235), Expect = 2e-23
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 286 CSHNGCGKTYTKSSHLKAHL---RTHTGEKPYQCGWKGCGWK---FARSDELTRHFRKHT 339
C +GC + + L H+ H K + C W GC + F L H R+HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 340 GDRPFQCTL--CERAFSRSDHLSLHMKRH 366
G++P +CT C +++SR ++L H++ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 75.7 bits (187), Expect = 1e-16
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 285 TCSHNGCGKTYTKSSHLKAH-LRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
C H GC K ++ +S H RTH+ EKPY C GC ++ L +H + G
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 59.1 bits (144), Expect = 6e-11
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRK---HTGDRPFQCTLCE-----RAFSRSDHLSLH 362
E + GC +F ++L H H + F C R F L +H
Sbjct: 1 ETDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 363 MKRH 366
M+RH
Sbjct: 59 MRRH 62
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 100 bits (251), Expect = 2e-26
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK +++ LK H+R HTG KPY+C K C + A S L +H R H+ +RPF+C +C
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQICP 71
Query: 351 RAFSRSDHLSLHMKRH 366
A S L++H++ H
Sbjct: 72 YASRNSSQLTVHLRSH 87
Score = 79.0 bits (196), Expect = 1e-18
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
C SS L HLR H+ E+P++C + C + S +LT H R HTGD
Sbjct: 42 CDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 75.9 bits (188), Expect = 1e-17
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 307 THTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ P++C + CG F+R D+L H R HTG +P++C C+ A + S L+ H++ H
Sbjct: 2 SSGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 54.7 bits (133), Expect = 5e-10
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCG 317
C SS L HLR+HTG+ G
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGPSSG 96
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 100 bits (251), Expect = 2e-26
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG--DRPFQCTL 348
CGK + HL H +H+GEKPY C CG +F R D ++ H R H G +P+ C
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 349 CERAFSRSDHLSLHMKR 365
C + FSR DHL+ H+K+
Sbjct: 71 CGKGFSRPDHLNGHIKQ 87
Score = 76.4 bits (189), Expect = 9e-18
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 308 HTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G C + CG F L RH H+G++P+ C +C F R D +S H++ H
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 38.6 bits (91), Expect = 3e-04
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 291 CGKTYTKSSHLKAHL-RTHTGEK 312
CGK +++ HL H+ + H+G
Sbjct: 71 CGKGFSRPDHLNGHIKQVHSGPS 93
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 98.9 bits (247), Expect = 2e-26
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKP+ C W GCGW+F+RSDEL+RH R H+G +P +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 54.6 bits (132), Expect = 2e-10
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
C+ GCG +++S L H R+H+G KP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 99.1 bits (248), Expect = 4e-26
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
C + +++S HL H+RTHTGEKP+ C CG KFARSDE RH P E
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LPILEDKVE 65
Query: 351 RAFSRSDHLSLHMKRH 366
S++ HL + R
Sbjct: 66 ELLSKNYHLENEVARL 81
Score = 68.7 bits (169), Expect = 5e-15
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
KP+QC + C F+RSD LT H R HTG++PF C +C R F+RSD H
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 57.9 bits (141), Expect = 4e-11
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRH---FRKHTGDR 342
CG+ + +S K H P +++ L +K G+R
Sbjct: 37 CGRKFARSDERKRHRDIQH-ILPILE--DKVEELLSKNYHLENEVARLKKLVGER 88
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 101 bits (253), Expect = 4e-26
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTL-- 348
GK++ L H+R HTGEKP+ C + GCG FARS+ L H R HTG++PF+C
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 349 CERAFSRSDHLSLHMKRH 366
C+R F+ S HM H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145
Score = 95.8 bits (239), Expect = 5e-24
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C GCGK + +S +LK H RTHTGEKP++C ++GC +FA S + +H HT D+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 344 FQCT 347
+
Sbjct: 151 GPSS 154
Score = 92.7 bits (231), Expect = 6e-23
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQ----CGWKGC---GWKFARSDELTRHFRKH 338
C +T++ L H+ P Q C W+ C G F +L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 339 TGDRPFQCTL--CERAFSRSDHLSLHMKRH 366
TG++PF C C + F+RS++L +H + H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 81.6 bits (202), Expect = 8e-19
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 11/85 (12%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQ----- 345
G + + + K C F+ EL H P Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 346 ----CTLCERAFSRSDHLSLHMKRH 366
C ++F L H++ H
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 97.2 bits (243), Expect = 2e-25
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLR-THTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
C GCG+ ++ +L H + H +K + C CG F L H + H+ R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 344 FQCTLCERAF 353
+ C +
Sbjct: 69 YICEFSGPSS 78
Score = 81.8 bits (203), Expect = 6e-20
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 308 HTGEKPYQCGWKGCGWKFARSDELTRHFR-KHTGDRPFQCT--LCERAFSRSDHLSLHMK 364
+G C + GCG F+ L H + +H + F C C ++F+ HL HMK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 365 RH 366
H
Sbjct: 62 LH 63
Score = 63.3 bits (155), Expect = 4e-13
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGC 321
+C CGK++ HLK H++ H+ + Y C + G
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP 76
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 96.0 bits (240), Expect = 4e-25
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++ +SS L HL H+ +PY C + CG +F + ++ +H HTG++P +C +C
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 64
Query: 351 RAFSRSDHLSLHMKRH 366
+AFS+S +L H ++H
Sbjct: 65 KAFSQSSNLITHSRKH 80
Score = 69.8 bits (172), Expect = 2e-15
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
CGK + + S +K H HTGEKP++C + CG F++S L H RKHTG
Sbjct: 35 CGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
Score = 28.2 bits (64), Expect = 1.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C +C ++F RS LS H+ H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH 24
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 96.8 bits (242), Expect = 8e-25
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK---HTGD 341
C C K + +LK H R HTGEKP++C CG + R + L H + + +
Sbjct: 9 ECPT--CHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+ F C++C+ F R L LHM H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSH 89
Score = 93.7 bits (234), Expect = 1e-23
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLR---THTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
C CGK Y + +L H + E+ + C C F R EL H HTG
Sbjct: 36 FECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTC--SVCQETFRRRMELRLHMVSHTG 91
Query: 341 DRPFQCTLCERAFSRSDHLSLHMKR 365
+ P++C+ C + F + L HM +
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 73.7 bits (182), Expect = 2e-16
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 308 HTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G +C C KF L H RKHTG++PF+C C + + R ++L H R+
Sbjct: 2 SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Score = 39.0 bits (92), Expect = 4e-04
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 284 HTCSHNGCGKTYTKSSHLKAH-LRTHTGEK 312
+ CS C + + + L++H ++ H+G
Sbjct: 95 YKCSS--CSQQFMQKKDLQSHMIKLHSGPS 122
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 96.0 bits (240), Expect = 1e-24
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CG+ +TKS +L H RTHT E+PY C C F R D L H H+ ++PF+C C
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 351 RAFSRSDHLSLHMKRH 366
+ F +S L++H H
Sbjct: 81 KGFCQSRTLAVHKTLH 96
Score = 86.3 bits (215), Expect = 3e-21
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 298 SSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSD 357
SS +K + C K CG F +S L H R HT +RP+ C +C +AF R D
Sbjct: 2 SSGSSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 358 HLSLHMKRH 366
HL H H
Sbjct: 60 HLRDHRYIH 68
Score = 77.1 bits (191), Expect = 8e-18
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
C K + + HL+ H H+ EKP++C + CG F +S L H H
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 97.1 bits (243), Expect = 4e-24
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+ C CGK++++ +HL+AH RTHTGEKPY+C CG F+R D L H R HTG++P
Sbjct: 106 YACPE--CGKSFSQLAHLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKP 161
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
++C C ++FSR D L++H + H
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTH 184
Score = 97.1 bits (243), Expect = 4e-24
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++++S HL H RTHTGEKPY+C CG F+ +LTRH R HTG++P++C C
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCPECG 84
Query: 351 RAFSRSDHLSLHMKRH 366
++FS+ +L H + H
Sbjct: 85 KSFSQRANLRAHQRTH 100
Score = 96.7 bits (242), Expect = 4e-24
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++++ ++L+AH RTHTGEKPY C CG F++ L H R HTG++P++C C
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 351 RAFSRSDHLSLHMKRH 366
++FSR D+L H + H
Sbjct: 141 KSFSREDNLHTHQRTH 156
Score = 87.5 bits (218), Expect = 1e-20
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 294 TYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAF 353
+ SS A GEKPY C CG F+RSD L H R HTG++P++C C ++F
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
Query: 354 SRSDHLSLHMKRH 366
S L+ H + H
Sbjct: 60 SDKKDLTRHQRTH 72
Score = 73.2 bits (181), Expect = 2e-15
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
CGK++++ +L H RTHTGEKPY+C CG F+R D L H R HTG +
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHTGKKT 189
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 89.9 bits (224), Expect = 8e-23
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 300 HLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG--DRPFQCTLCERAFSRSD 357
+ RTH+GEKPY+C C +F +S + H + F C C+ +R
Sbjct: 2 SSGSSGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 358 HLSLHMKRH 366
L +H+++
Sbjct: 60 DLGVHLRKQ 68
Score = 70.2 bits (173), Expect = 1e-15
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGE--KPYQCGWKGCGWKFARSDELTRHFRK-HTG 340
+ C C +T+S +K H+ E + C C AR +L H RK H+
Sbjct: 16 YECYI--CHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSY 71
Query: 341 DRPF 344
P
Sbjct: 72 SGPS 75
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 90.2 bits (225), Expect = 1e-22
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
CGK++T S H+ H G +PY C CG KF L H + HTG +P++C +C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 351 RAFSRSDHLSLHM 363
+ F D H+
Sbjct: 73 KRFMWRDSFHRHV 85
Score = 85.2 bits (212), Expect = 1e-20
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 283 MHT------CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFR 336
MH C CGK + HL H++ HTG KPY+C C +F D H
Sbjct: 31 MHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC--NICAKRFMWRDSF--HRH 84
Query: 337 KHTGDRPFQCTLCERAFSRSDHLS 360
+ + ++ E+ + + S
Sbjct: 85 VTSCTKSYEAAKAEQNTTEASGPS 108
Score = 77.9 bits (193), Expect = 5e-18
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
+G+K Y C CG F + RH H G RP+ C +C + F HL HMK
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 366 H 366
H
Sbjct: 60 H 60
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 85.3 bits (212), Expect = 3e-21
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFR--KHTGDRPFQCTLCERAFSRSDHLSLHM 363
T GE Y+C K C + RH+ + + C C + F+R D+++ H+
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 364 KRH 366
K
Sbjct: 61 KII 63
Score = 66.4 bits (163), Expect = 2e-14
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRT--HTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
+ C C + YT S+ H T K Y C + C +F R D +T H +
Sbjct: 11 YRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 84.0 bits (209), Expect = 1e-20
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 298 SSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSD 357
H H +KPY+C C F L H HTG++P++C +C F+R
Sbjct: 2 GHHHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Query: 358 HLSLHMKRH 366
+L H + H
Sbjct: 60 NLKTHTRIH 68
Score = 70.6 bits (174), Expect = 8e-16
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
C ++ +L +H HTGEKPY+C CG +F R L H R H+G++P+
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 81.3 bits (202), Expect = 1e-19
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 297 KSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRS 356
S + Y+C CG F+ S +L++H R HTG++P++C C +AF +
Sbjct: 2 SSGSSGRSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Query: 357 DHLSLHMKRH 366
HL H + H
Sbjct: 60 SHLIGHHRVH 69
Score = 70.5 bits (174), Expect = 8e-16
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
CGK+++ SS L H RTHTGEKPY+C CG F + L H R HTG P
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 46.7 bits (112), Expect = 3e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 326 ARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
S R + R ++C C ++FS S LS H + H
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 81.4 bits (202), Expect = 1e-19
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 300 HLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG----DRPFQCTLCERAFSR 355
+ RTHTGEKPY C C F + L HF+++ F C+ C + F+R
Sbjct: 2 SSGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 356 SDHLSLHMKRH 366
+ ++ H
Sbjct: 60 RNTMARHADNC 70
Score = 79.9 bits (198), Expect = 5e-19
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGE----KPYQCGWKGCGWKFARSDELTRHFRKHT 339
+ CSH C KT+ + L H + + + C CG F R + + RH
Sbjct: 16 YACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCA 71
Query: 340 GDRPFQCTLCERAF 353
G + +
Sbjct: 72 GPDGVEGENSGPSS 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 80.6 bits (200), Expect = 2e-19
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
+ + P +C C + + L H R H DRPF+C C + +LS HMK+
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 366 H 366
Sbjct: 60 F 60
Score = 74.1 bits (183), Expect = 4e-17
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
C + + + L+ H R H ++P++C C + + L++H +K GD +
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 77.5 bits (192), Expect = 2e-18
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 301 LKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLS 360
H+GEKPY C CG F+RS L +H R HTG++P++C C +AFS++ L
Sbjct: 2 SSGSSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 361 LHMKRH 366
H + H
Sbjct: 60 NHQRIH 65
Score = 71.0 bits (175), Expect = 5e-16
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
CGK +++SS L H R HTGEKPY+C CG F+++ L H R HT
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTSGPSS 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 75.1 bits (185), Expect = 2e-17
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 308 HTGEKPYQCGWKGCGWKFARSDELTRHFRKHT---GDRPFQCTLCERAFSRSDHLSLHMK 364
+G QC + CG+ + L H RKH F C C + F + D ++ H
Sbjct: 2 SSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 365 RH 366
+
Sbjct: 60 KS 61
Score = 62.8 bits (153), Expect = 6e-13
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHT---GEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
C CG T + + L H R H + C + CG +F + D + H K
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAHRSKSHP 63
Query: 341 DRPFQC 346
Sbjct: 64 ALLLAP 69
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 74.1 bits (183), Expect = 3e-17
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK-HTGD 341
C C + + + HLK H R+HT EKPY C C F R D L RH +K H+G+
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 70.2 bits (173), Expect = 7e-16
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
+ + C + C FAR + L RH+R HT ++P+ C LC RAF+R D L H ++
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
R F C +C RAF+R +HL H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 34.8 bits (81), Expect = 0.003
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 291 CGKTYTKSSHLKAHL-RTHTGEK 312
C + +T+ L H + H+G
Sbjct: 36 CNRAFTRRDLLIRHAQKIHSGNL 58
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 69.3 bits (170), Expect = 1e-15
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
R TG +PFQC C+R+FSRSDHL+LH KRH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.0 bits (68), Expect = 0.076
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTH 308
T G C +++++S HL H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 68.8 bits (169), Expect = 1e-15
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+P+ C W CG +F RSDEL RH R HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 44.9 bits (107), Expect = 4e-07
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
C+ + CGK +T+S L+ H RTHTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 38.7 bits (91), Expect = 6e-05
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 342 RPFQCT--LCERAFSRSDHLSLHMKRH 366
RPF CT C + F+RSD L H + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 65.4 bits (159), Expect = 9e-14
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHL-RTHTGEKP---YQCGWKGC---GWKFARSDELTRHFR 336
+ C +T++ L H+ H G + C W+ C G F +L H R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 337 KHTGDRPFQCT 347
HTG++ +
Sbjct: 84 VHTGEKSGPSS 94
Score = 46.5 bits (110), Expect = 4e-07
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 11/69 (15%)
Query: 307 THTGEKPYQCGWKGCGWKFARSDELTRHFRK-HTGDRPFQ--------CTLCERAFSRSD 357
+ K C F+ EL H H G C ++F
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 358 HLSLHMKRH 366
L H++ H
Sbjct: 77 KLVNHIRVH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 64.1 bits (157), Expect = 1e-13
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK-HTGDRPFQCTLCERAFS 354
+ + + KPY C + CG F+R D L H ++ HT +RP +C + S
Sbjct: 2 SSGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 49.9 bits (120), Expect = 1e-08
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHL-RTHTGEKPYQCGWKGCGWKFA 326
+ C CGK +++ HL H+ + HT E+P++C + +
Sbjct: 13 YICQS--CGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
Score = 43.0 bits (102), Expect = 3e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
+ +P+ C C + FSR DHL+ H+K+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 62.0 bits (151), Expect = 4e-13
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 277 SRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
++K H C GCGK Y K+SHL+AHLR HTGE+
Sbjct: 4 GKKKQ--HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 29.2 bits (66), Expect = 0.17
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 342 RPFQCTL--CERAFSRSDHLSLHMKRH 366
+ C + C + + ++ HL H++ H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEK Y C K CG F+R+ L +H R H+G++P +
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK+++++ L H R H+GEKP
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++ + C C ++FSR+ L H + H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GE+PY C CG F R L H ++H ++ +
Sbjct: 3 SGSSGSGERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 51.4 bits (124), Expect = 3e-09
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK + + SHL HL+ H EK
Sbjct: 16 NECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.4 bits (106), Expect = 7e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G+RP+ C C + F R HL H+KRH
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C + CG F S L +H H+G+RP +
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + SSHL H H+GE+P
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C +C +AF S HL H H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GEKPY+C CG F R L H R HTG RP +
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + + +HL H R HTG +P
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P++C+ C +AF R HL+ H + H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TGEKP+QC K CG F+ S L +H R H P
Sbjct: 2 SSGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 49.9 bits (120), Expect = 9e-09
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPYQCG 317
S G CG ++ S L HLR+H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 41.8 bits (99), Expect = 8e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PFQC C FS S L H++ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TG++PY+C CG F L H R HTG++P +
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + S L H R+HTGEKP
Sbjct: 16 IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG RP++C C +AF L H + H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F + T+H R HTG RP +
Sbjct: 2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 47.6 bits (114), Expect = 5e-08
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + +S H R HTG++P
Sbjct: 16 MECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 39.9 bits (94), Expect = 3e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AF + + H + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 6e-12
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGE PY+C CG F+R +L H R H G++P +
Sbjct: 3 SGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK +++ L +H RTH GEKP
Sbjct: 16 HECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+ P++C C +AFSR L H + H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 6e-12
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGE+ Y+C CG FAR L H R HTG++P +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 48.6 bits (117), Expect = 2e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK + + S L H R HTGEKP
Sbjct: 16 SECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+R ++C+ C +AF+R L +H + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY C K CG F + L +H R H+G++P +
Sbjct: 2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK++ +S L H R H+GEKP
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P+ C C ++F + L H + H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.1 bits (144), Expect = 6e-12
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C K CG F+++ L +H R HTG++P +
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 9e-09
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +++++HL H R HTGEKP
Sbjct: 16 KECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AFS++ HL H + H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 6e-12
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKP++C C F L H R HTG++P +
Sbjct: 2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ C K + S+L H RTHTGEKP
Sbjct: 16 SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PF+C+ C++AF+ +L +H + H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + GEKPY C CG F+ L H R H+G++P +
Sbjct: 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK ++ S+L H+RTH+GEKP
Sbjct: 16 SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++P+ C+ C +AFS +L +HM+ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + +GEKPY+C CG + R +L H R HTG++ +
Sbjct: 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK Y + L H R HTGEK
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P++C C + + R L H + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 58.7 bits (143), Expect = 8e-12
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TG+KP++C CG F L H R HTG++ +
Sbjct: 2 SSGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
C+H CGK++ +L H R HTGEK
Sbjct: 15 CTH--CGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +PF+CT C ++F +L H + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKP++C CG F+ S +L H R HTG++P +
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 6e-09
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK+++ SS L H R HTGEKP
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PF+C C ++FS S L+ H + H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GEKPY C CG F S EL RH R HTG++P +
Sbjct: 3 SGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK + S+ L H R HTGEKP
Sbjct: 16 DYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C C +AF S L H + H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY C CG F L +H + HT +P +
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +T S+L H + HT +KP
Sbjct: 18 CGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P+ C C +AF+ +L H K H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKP+ C CG F+ L +H R HTG++P +
Sbjct: 2 SSGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK ++ L H R HTGEKP
Sbjct: 16 IDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PF C C +AFS L+ H + H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.3 bits (142), Expect = 8e-12
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TG KPY C CG F L H R HTG+
Sbjct: 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
N CGK + S+L H RTHTGE G
Sbjct: 16 NECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +P+ C C +AF +L +H + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C K C F + L +H + HTG++P +
Sbjct: 2 SSGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
C K +T+ +HL H +THTGEKP
Sbjct: 16 KVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C +C +AF++ HL+ H K H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F R L H + HTG+R +
Sbjct: 3 SGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 51.4 bits (124), Expect = 3e-09
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK +T+ S L H ++HTGE+
Sbjct: 16 SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 41.3 bits (98), Expect = 9e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C+ C +AF+R L +H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY C CG F + L RH R HTG++P +
Sbjct: 2 SSGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK++ + SHL H R HTGEKP
Sbjct: 16 NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P+ C C ++F + HL+ H + H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F+ L+ H R H+G +P +
Sbjct: 3 SGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK ++ L H R H+G+KP
Sbjct: 16 SVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C++C +AFS LS+H + H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.3 bits (142), Expect = 1e-11
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TGEKPY+C C F L H R HTG+
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 53.6 bits (130), Expect = 3e-10
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
N C K + S+L H RTHTGE G
Sbjct: 16 NECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C++AF+ +L +H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + +GEKP++C + CG F + + H R H+G++P +
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 9e-09
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + +S +H R+H+GEKP
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++PF+C C + F + H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKP++C CG F L RH HT ++P +
Sbjct: 2 SSGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK++ S L H HT EKP
Sbjct: 16 DICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 40.9 bits (97), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PF+C +C ++F L+ H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C C F+ LT+H R H+G++P +
Sbjct: 3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ C K ++ + L H R H+GEKP
Sbjct: 16 DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C +C +AFS L+ H + H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C + CG F +L H HTG++P +
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + L H HTGEKP
Sbjct: 18 CGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + +GEKP++C K CG F ++ L H R HTG++P +
Sbjct: 2 SSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + ++ HL +HLR HTGEKP
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++PF+C C +AF ++ HL+ H++ H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKP++C CG F+R L H + HTG++P +
Sbjct: 2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 9e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +++ S L H + HTGEKP
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 9e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PF+C C + FSR L++H K H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKP++C CG + + LT+H R HTG++P +
Sbjct: 3 SGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK+Y + HL H R HTGEKP
Sbjct: 16 GECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++PF+C C +++++ HL+ H + H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TG KPYQC CG F+++ +L RH R HTG++P +
Sbjct: 2 SSGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK ++++S L H R HTGEKP
Sbjct: 16 NECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +P+QC C +AFS++ L+ H + H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TG K ++C CG F R L+ H + HTG++P +
Sbjct: 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +T+ S L H + HTGEKP
Sbjct: 16 TECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG + F+CT C +AF+R LS+H K H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGE+P++C CG F +S L +H R HTG++P +
Sbjct: 3 SGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK++ +S+HL H R HTGEKP
Sbjct: 16 NECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+RP +C C ++F +S HL H + H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEK Y+C CG F+R+ +L++H + HTG++P +
Sbjct: 3 SGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK ++++S L H + HTGEKP
Sbjct: 16 NECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++ ++C C + FSR+ LS H K H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TG KPY C C F+ +L H R HTG +P +
Sbjct: 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ C KT++ S L H R+HTG KP
Sbjct: 16 SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +P+ C+ C + FS L +H + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F R+ L RH HTG++P +
Sbjct: 2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK + ++SHL H HTGEKP
Sbjct: 16 HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F R+ HL+ H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY C CG F S L +H R HT + +
Sbjct: 3 SGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK + S+HL HLR HT E
Sbjct: 16 NVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P+ C +C +AF S HL+ H++ H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C + CG + L H + HTG+RP +
Sbjct: 2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK Y +L H + HTGE+P
Sbjct: 16 EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + ++ +L +H K H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 57.6 bits (140), Expect = 2e-11
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK-HTGDRPFQCT 347
+ + TG+KPY+C CG F ++ L RH+R HTG++P +
Sbjct: 2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 45.3 bits (108), Expect = 4e-07
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 289 NGCGKTYTKSSHLKAHLR-THTGEKPYQC 316
CGK + +++ L H R HTGEKP
Sbjct: 16 IECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 39.1 bits (92), Expect = 7e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKR 365
TG +P++C C +AF ++ L H +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKP++C + CG F+ + +L H R HTG+ P +
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK+++ +S L H R HTGE P
Sbjct: 16 RECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 41.8 bits (99), Expect = 8e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P +C C ++FS + L +H + H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 2e-11
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GEKP+QC + CG +F ++ L H R HTG++P +
Sbjct: 3 SGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +T++SHL +H R HTGEKP
Sbjct: 16 EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++PFQC C + F+++ HL H + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F + +L H + HTG++P +
Sbjct: 3 SGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CS CGK++TK S L H + HTGEKP
Sbjct: 15 CSI--CGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C++C ++F++ L +H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGE P+ C CG F L H + HTG+RP +
Sbjct: 2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 48.6 bits (117), Expect = 2e-08
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK +T ++L H + HTGE+P
Sbjct: 16 SECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+ PF C+ C + F+ +L +H K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F+ LT H HTG +P +
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK ++ S L H HTG+KP
Sbjct: 16 NQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AFS L+ H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + +GEKPY C CG F++ L+ H R HTG++P +
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGKT+++ S L AH RTHTGEKP
Sbjct: 16 NECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C C + FS+ LS H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGE+ Y+C CG F + L+ H R H G++P +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK + + S L H R H GEKP
Sbjct: 16 SECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+R ++C+ C +AF + LS+H + H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 2e-11
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TGEKPY+C CG F + +L H R HTG+ P
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK++ K S L H R HTGE P
Sbjct: 16 SDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C+ C ++F + L +H + H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + + EKPY+C + CG + R L H R H G++ +
Sbjct: 2 SSGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK Y + +L H R H GEK
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ ++P++C C + ++R +L +H + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F L H H+G++P +
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK + S L H TH+GEKP
Sbjct: 16 NECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AF L++H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG FA+ LT+H R HTG++P +
Sbjct: 2 SSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + + ++L H R HTGEKP
Sbjct: 16 GECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AF++ +L+ H + H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY C + CG F +L H R HTG++P +
Sbjct: 2 SSGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + S L+ H R HTGEKP
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P+ C C +AF L H + H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F+++ +L RH R HTG++P +
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK ++++S L H R HTGEKP
Sbjct: 16 NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AFS++ L+ H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F ++ L RH HTG++P +
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK +T++SHL H HTGEKP
Sbjct: 16 NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F+++ HL+ H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TG+KPY+C CG F ++ L RH HTG++P +
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK +T++SHL H HTGEKP
Sbjct: 16 NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +P++C C + F+++ HL+ H H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F ++ L RH HTG++P +
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK +T++SHL H HTGEKP
Sbjct: 16 NECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F+++ HL H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 3e-11
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ GEK Y+C CG +F++S L H R HTG++P +
Sbjct: 3 SGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CGK +++SSHL+ H R HTGEKP
Sbjct: 16 DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++ ++C +C + FS+S HL H + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + +GEKPY+C CG F ++ LT H+R HTG++P +
Sbjct: 2 SSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 51.3 bits (124), Expect = 3e-09
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK +T++SHL H R HTGEKP
Sbjct: 16 NECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P++C C + F+++ HL+ H + H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F LT H HTG++P +
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK + S+L H HTGEKP
Sbjct: 16 NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AF +L+ H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F L H + HTG+R +
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK++T S L+ H + HTGE+
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C+ C ++F+ L +H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+GE PY+C CG F R D+L H R H G+
Sbjct: 3 SGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 51.7 bits (125), Expect = 2e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
+ CGK + + L +H RTH GE G
Sbjct: 14 SECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 336 RKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G+ P++C+ C +AF+R D L H + H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C C F LT H R HTG++P +
Sbjct: 2 SSGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ C K++ S L H R HTGEKP
Sbjct: 16 DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C +C ++F L++H + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F ++ L RH R HTG +P +
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK +T++SHL H R HTG KP
Sbjct: 16 NECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F+++ HL+ H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 57.0 bits (137), Expect = 4e-11
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
CG K S LK H+RTHT +PY C C + F LT+H + +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 49.3 bits (117), Expect = 2e-08
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 314 YQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
Y C CG + + L +H R HT RP+ CT C +F +L+ HMK
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + GEKPYQC CG F+ S LT+H+ HT ++P +
Sbjct: 2 SSGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK+++ S L H THT EKP
Sbjct: 18 CGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++P+QC+ C ++FS S L+ H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + +G+KPY+C K C F + L +H R HTG+R
Sbjct: 2 SSGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
C KT+ + HL H R HTGE+
Sbjct: 18 CRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G +P++C C + F + HL+ H + H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ TGEKPY+C CG F + L+RH R HTG++P +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK + +S+L H R HTGEKP
Sbjct: 16 NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F + +LS H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TG KPY C CG F+ LT H HTG++P
Sbjct: 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK ++ S L H HTGEKP
Sbjct: 16 NECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG +P+ C C +AFS L+ H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKPY+C CG F ++ L H R HTG +P +
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK +T++SHL H R HTG KP
Sbjct: 16 NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C + F+++ HL+ H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 56.4 bits (137), Expect = 5e-11
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + +GEKPY+C CG F L H R H G
Sbjct: 2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
N CGK + S L H RTH G G
Sbjct: 16 NECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P++C C +AF L +H + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.4 bits (137), Expect = 5e-11
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TGE PY+C CG F+R D+L H + H+G
Sbjct: 2 SSGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
CGK +++ L +H +TH+G+ G
Sbjct: 16 CECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+ P++C C + FSR D L H K H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 6e-11
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TGE+PY C CG F L +H + HTG++P
Sbjct: 2 SSGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +T S+L H + HTGEKP
Sbjct: 16 TVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG+RP+ CT+C +AF+ +L H K H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 6e-11
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + TGEKP +C CG F +L H R H D+ +
Sbjct: 2 SSGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK + S L H RTH +K
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 39.1 bits (92), Expect = 7e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P +CT C +AF L +H + H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 7e-11
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + G+K ++C C F +S LT H R HTG++P +
Sbjct: 2 SSGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N C KT+T+SS L H R HTGEKP
Sbjct: 16 NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G + F+C C++ F++S L++H + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ + TGEKPY+C CG F L H + HTG++P
Sbjct: 2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +T S+L H + HTGEKP
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
TG++P++C C +AF+ +L H K H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GEKP++C + CG +F ++ +L H R HTG++P +
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQC 316
CGK +T++S L +H R HTGEKP
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++PF+C C + F+++ L H + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 54.5 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
+ GEKPY+C CG F++ L H R HTG P
Sbjct: 1 GSSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPY 314
+ CGK +++ L H+R HTG P
Sbjct: 15 DQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++P++C C +AFS+ L +H++ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
+ GEKPY C + CG +F L H R HTG P
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 49.8 bits (120), Expect = 8e-09
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPY 314
+ S G CG + LK+HLR HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 42.1 bits (100), Expect = 4e-06
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++P+ C +C F L H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-10
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GE+P++C CG F R L H R H+ ++ +
Sbjct: 3 SGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
N CGK + + SHL HLR H+ EK
Sbjct: 16 NECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G+RPF+C C + F R HL+ H++ H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + GEK ++C + C F+++ L H H G++P +
Sbjct: 2 SSGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 316
S G C ++++S L+ H H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++ ++C C+ FS++ L LH H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ GE+ ++C CG F ++ +H R HTG++P +
Sbjct: 3 SGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 316
S +G CGK + ++S+ H R HTGEKP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 1e-04
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G+R +C+ C + F ++ + H + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
+ GEKPY+C + CG +F + L H HTG P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPY 314
+ S G CG + + +HL+AH+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.5 bits (101), Expect = 3e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G++P++C C F + HL H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.6 bits (127), Expect = 9e-10
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+ T K Y C CG F R LTRH + HT
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
T + + C C +AF+R HL+ H K H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 42.6 bits (101), Expect = 4e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
N CGK +T+ HL H + HT + G
Sbjct: 16 NECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + G PY+C C F+ L H R HT ++P +
Sbjct: 2 SSGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPYQC 316
S G C K+++ L H R HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G P++C+ CE++FS L +H + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 53.5 bits (128), Expect = 1e-09
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 297 KSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRS 356
S + H G++ +C CG F R L+R + C C + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQE 52
Query: 357 DHLSLHMKRH 366
L+
Sbjct: 53 AALNKDEGNE 62
Score = 38.9 bits (90), Expect = 2e-04
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 11/61 (18%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
CS CG + + S T + K C + C + L + +G +
Sbjct: 19 QKCSK--CGIIFIRRS-------TLSRRKTPMC--EKCRKDSCQEAALNKDEGNESGKKT 67
Query: 344 F 344
Sbjct: 68 S 68
Score = 36.9 bits (85), Expect = 7e-04
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 326 ARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLH 362
S + + H GDR +C+ C F R LS
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.8 bits (125), Expect = 2e-09
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ + K +QC CG F L +H R HTG++P +
Sbjct: 3 SGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
+ CG+ +T SHL H R HTGEKP
Sbjct: 16 HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ + QC C R F+ HL+ H + H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 53.6 bits (128), Expect = 3e-09
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 291 CGKTYTKSSHLKAHLRT--HTGEKPYQCGWKG-CGWKFARSDELTRHFRKHTGDRPFQCT 347
C Y L H+ H + ++ W R L K + +C
Sbjct: 25 CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM 84
Query: 348 LCERAFSRSDHLSLHMKRH 366
C +F LS+HM +
Sbjct: 85 YCGHSFESLQDLSVHMIKT 103
Score = 39.4 bits (91), Expect = 2e-04
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 326 ARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMK 364
+ + TG F+C C A+ L++HM
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 31.7 bits (71), Expect = 0.11
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRK--HTGDRPFQ 345
N + + L +K +C CG F +L+ H K H
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKVLKC--MYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+GEKP+ C C F+ L H + H ++P +
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 50.2 bits (121), Expect = 6e-09
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
CS C K ++ S+L H +TH EKP
Sbjct: 11 FGCSC--CEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 338 HTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++PF C+ CE+AFS +L +H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 50.7 bits (121), Expect = 5e-09
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 273 RQNWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
S R C CGK + HL H +H+GEKPY G
Sbjct: 2 SSGSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 43.4 bits (102), Expect = 2e-06
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLC 349
+ K C CG F L RH H+G++P+
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.3 bits (81), Expect = 0.002
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 336 RKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ C +C + F HL+ H H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
+G++ Y+C + CG F + LT H R HTG P
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 45.3 bits (108), Expect = 4e-07
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPY 314
CGK++ + L H R HTG P
Sbjct: 14 QECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.8 bits (86), Expect = 4e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 336 RKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G R ++C C ++F + L+LH + H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.6 bits (114), Expect = 7e-08
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 304 HLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCT 347
+ +GEK + C CG F L H R H G++ +
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 44.9 bits (107), Expect = 6e-07
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQC 316
HTC + CGK + S L+ H R H GEK
Sbjct: 13 HTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 34.1 bits (79), Expect = 0.004
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++ C C + F L +H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 46.2 bits (110), Expect = 2e-07
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 306 RTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQC 346
+GEKPY C C F+ ++ L +H + HT
Sbjct: 3 SGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.9 bits (99), Expect = 6e-06
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCG 317
C +T++ ++ L H + HT + G
Sbjct: 16 CKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 41.2 bits (97), Expect = 1e-05
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 338 HTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C C+ FS ++ L H K H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 48.8 bits (115), Expect = 2e-07
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDE--LTRHFRKHTGD 341
+ +H G T + H T ++ + K DE
Sbjct: 13 YLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI 72
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
F C LC FS S L H++
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT 97
Score = 46.1 bits (108), Expect = 1e-06
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 295 YTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFS 354
S L + C C F+ S L +H R C +C++ F+
Sbjct: 56 LLDESSYLYRLLASKAISQFVC--PLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFT 111
Query: 355 RSDHLSLHMKRH 366
+D H+ +
Sbjct: 112 STDSALDHVCKK 123
Score = 38.0 bits (87), Expect = 9e-04
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
C ++ S LK H+R E C C +F +D H K
Sbjct: 80 CLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKK 123
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 46.1 bits (110), Expect = 2e-07
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPF 344
+ GE PY C CG F + L H R + P
Sbjct: 1 GSSGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 45.0 bits (107), Expect = 4e-07
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 284 HTCSHNG--------CGKTYTKSSHLKAHLRTHTGEKPY 314
+ S G CGK++T+ L H R+ + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 36.5 bits (85), Expect = 4e-04
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 334 HFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G+ P+ C C ++F++ L++H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.8 bits (98), Expect = 6e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 333 RHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
G+ PF+C+ C+R F++ ++L H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 40.6 bits (95), Expect = 2e-05
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 303 AHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRP 343
+ + GE P++C C F + + L +H R H
Sbjct: 2 SSGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.8 bits (80), Expect = 0.002
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 289 NGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
+ C + +T+ ++L H RTH + G
Sbjct: 16 SKCDRVFTQRNYLVQHERTHARKSGPSSG 44
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 41.1 bits (96), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHT 339
++PY C GC F R+ +L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 28.8 bits (64), Expect = 0.21
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 341 DRPFQCTL--CERAFSRSDHLSLHMKRH 366
DRP+ C C++AF R+ L H K H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 27.3 bits (60), Expect = 0.80
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHT 309
++C H GC K + ++ L H ++H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 39.2 bits (92), Expect = 4e-05
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
R F C +C RAF+R +HL H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 37.3 bits (87), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
C C + + + HLK H R+HT EK
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 35.8 bits (83), Expect = 7e-04
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+ + C C FAR + L RH+R HT ++
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 38.7 bits (90), Expect = 6e-05
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C C + F RSDHL+LH+ H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
Score = 27.6 bits (61), Expect = 0.51
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 321 CGWKFARSDELTRHFRKHTGDR 342
C +F RSD LT H H +
Sbjct: 8 CPKRFMRSDHLTLHILLHENKK 29
Score = 27.2 bits (60), Expect = 0.92
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
C K + +S HL H+ H +K
Sbjct: 8 CPKRFMRSDHLTLHILLHENKK 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 38.7 bits (90), Expect = 6e-05
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
F C C + F RSDHLS H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
Score = 28.3 bits (63), Expect = 0.34
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 321 CGWKFARSDELTRHFRKHTGDRP 343
C +F RSD L++H H
Sbjct: 8 CPKRFMRSDHLSKHITLHELLGE 30
Score = 26.8 bits (59), Expect = 1.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKP 313
C K + +S HL H+ H
Sbjct: 8 CPKRFMRSDHLSKHITLHELLGE 30
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 38.7 bits (90), Expect = 1e-04
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
C GC KT+ + ++++H++TH ++
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 36.4 bits (84), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+K ++C + GC F R + H + H DR
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.4 bits (58), Expect = 2.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 334 HFRKHTGDRPFQCTL--CERAFSRSDHLSLHMKRH 366
+ K D+ F+C C + F R ++ H++ H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 36.4 bits (83), Expect = 5e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 338 HTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G++P+ C +C F R D +S H++ H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 34.1 bits (77), Expect = 0.004
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 308 HTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
+GEKPY C CG +F R D ++ H R H G
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDG 35
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 33.6 bits (76), Expect = 0.004
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEK 312
CGK +T++S L AH+R HTGEK
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
Score = 27.0 bits (59), Expect = 0.98
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+P QC +C +AF+++ L H+++H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 26.3 bits (57), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
KP QC CG F ++ L H R+HTG++
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.1 bits (80), Expect = 0.005
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 298 SSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFR-KHTG---DRPFQCTLCERAF 353
H + + E Y+C K C ++ + T H +H + + C C
Sbjct: 3 HHHHHHNQQNKKVEGGYEC--KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 354 SRSDHLSLHMKRH 366
R D LS H ++
Sbjct: 61 KRYDALSEHNLKY 73
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 33.1 bits (75), Expect = 0.008
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 311 EKPYQCGWKGCGWKFARSDELTRHFRKHT 339
+KP+ C GCG +F D L H KH
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 32.7 bits (74), Expect = 0.009
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 341 DRPFQCTL--CERAFSRSDHLSLHMKRH 366
D+PF CT C + F+ DHL++H +H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 24.3 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 286 CSHNGCGKTYTKSSHLKAHLRTHT 309
C+ GCG+ +T HL H H
Sbjct: 9 CTAPGCGQRFTNEDHLAVHKHKHE 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 32.9 bits (75), Expect = 0.008
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRK-HTGD 341
K Y CG C F R D L RH +K H+G+
Sbjct: 1 KAYACGL--CNRAFTRRDLLIRHAQKIHSGN 29
Score = 31.7 bits (72), Expect = 0.019
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKR 365
+ + C LC RAF+R D L H ++
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 33.1 bits (75), Expect = 0.012
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 285 TCSHNGCGKTYTKSSHLKAHL-RTHTGEK------PYQCGWKGCGWKFARSDELTRHFRK 337
C C ++ + L+ HL + H + P C W+ C + + + H
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA 62
Query: 338 H 338
Sbjct: 63 Q 63
Score = 26.6 bits (58), Expect = 2.8
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 314 YQCGWKGCGWKFARSDELTRH-FRKHTG------DRPFQC--TLCERAFSRSDHLSLHMK 364
+C WK C + +L RH + H P C C+ + + H+
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 365 RH 366
Sbjct: 62 AQ 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.012
Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 52/204 (25%)
Query: 100 NYYIDFNTSN-NYKNKPPDQIVPNLLYS-----EIKKYEDVYKNEPLSAFVEYSVKSENS 153
++++DF T Y+ K I+ + + K +D+ K+ +++ + S+++
Sbjct: 4 HHHMDFETGEHQYQYK---DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 154 SNLSDEHKQTLSCNYNQYPSQHSIDSSSVNNYSSLYLSPVT--PSNPEFYPENYQYHHYR 211
+ + TL + + Q ++ NY L SP+ P Y R
Sbjct: 61 VSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDR 118
Query: 212 DDYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQTPSITIKSSLLS-KP 270
Y N + K ++ + + ++ + +LL +P
Sbjct: 119 --------------LYNDNQV----FAKYNV---SRLQPYLKL--------RQALLELRP 149
Query: 271 KRRQNWSRRKIIMHTCSHNGCGKT 294
+ +++ G GKT
Sbjct: 150 AK-------NVLID--GVLGSGKT 164
Score = 36.4 bits (83), Expect = 0.016
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 25/174 (14%)
Query: 6 QKLNSIGI--QHCSIKHK-----QAHSSQFSS-TLPTCLGLDKCPFP----YILFCFLCC 53
K ++I I + +K K H S +P D P Y + +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHI-- 477
Query: 54 PQVWHDIETVMSGEG---PPVFIDYTAASDLVQDIIPNVESSTSNTPVSNYYIDFNTSNN 110
H VF+D+ L Q I + + ++ + N
Sbjct: 478 --GHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 111 Y--KNKPPDQIVPNLLYSEIKKYEDVYKNEPLSAFVEYSVKSENSSNLSDEHKQ 162
Y N P + + N + + K E+ + + ++ +E+ + + HKQ
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 28.3 bits (62), Expect = 5.0
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 24/98 (24%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQTPSITIKSSL--LSKP 270
YSL ++ QP+ + Y +L + + H I +I L P
Sbjct: 413 KYSL-VEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 271 KRRQNWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTH 308
Q + SH G + HLK
Sbjct: 468 YLDQYF---------YSHIG----H----HLKNIEHPE 488
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.014
Identities = 42/269 (15%), Positives = 85/269 (31%), Gaps = 91/269 (33%)
Query: 8 LNSIGIQHCSIKHK-------QAHSSQ----FSSTLPT---CLGLDKCP-------FPYI 46
+ + H S++H +SQ F+ LP D P ++
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 47 LFCFLCCPQVWHDIETVMSGEGPPV-------F-IDYTAASD---LVQDIIPNVESS--T 93
+ V +E G+ V F Y +D L ++ +++
Sbjct: 66 GY-------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 94 SNTPVSNYYIDFNTSNNYKNKPPDQIVPNLLYSEIKK-----------------Y--E-- 132
+ + NY T+ +P D+ + L+ + + Y E
Sbjct: 119 TKELIKNYI----TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 133 DVYK--NEPLSAFVEYSVKSENSSNLSDEHKQTLSCNYNQYPSQHSIDSSS-VNNYSSL- 188
D+Y+ + + +++S + LS+ + TL + ++ + N S+
Sbjct: 175 DLYQTYHVLVGDLIKFS-----AETLSELIRTTLDAEK-VFT--QGLNILEWLENPSNTP 226
Query: 189 ---YL--SPVTPSNPEFYPEN--YQYHHY 210
YL P++ P Q HY
Sbjct: 227 DKDYLLSIPIS------CPLIGVIQLAHY 249
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 32.0 bits (72), Expect = 0.017
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 344 FQCTLCERAFSRSDHLSLHMK 364
F C C + F RSD LS H+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 35.8 bits (82), Expect = 0.018
Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 28/138 (20%)
Query: 247 QTHHHTQIFQTPSITIKSSLLSKPKR---------------RQNWSRRKIIMHTCSHNG- 290
+HHH Q P+ +K + LS +R RQ + R I + + G
Sbjct: 3 SSHHHHHHSQDPNSHMKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGC 62
Query: 291 ----CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFAR-SDELTRHFRKHTGDRPFQ 345
GKT + L + + +G + S F
Sbjct: 63 CIVELGKT-RVLGQVSCELVSPKLNRA----TEGILFFNLELSQMAAPAFEPGRQSDLLV 117
Query: 346 --CTLCERAFSRSDHLSL 361
L ER S +
Sbjct: 118 KLNRLMERCLRNSKCIDT 135
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (72), Expect = 0.019
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 338 HTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
++ F+C CE+ FS S +L+ H + H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 26.7 bits (58), Expect = 1.7
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 307 THTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
+ EK ++C C F+ S LT+H R HT
Sbjct: 6 SGQKEKCFKC--NKCEKTFSCSKYLTQHERIHT 36
Score = 24.8 bits (53), Expect = 7.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 289 NGCGKTYTKSSHLKAHLRTHT 309
N C KT++ S +L H R HT
Sbjct: 16 NKCEKTFSCSKYLTQHERIHT 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.2 bits (80), Expect = 0.039
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 336 RKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ +QC +C L H+ H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 1.6
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 157 SDEHKQTLSCNYNQYPSQHSIDSSSVNNYSSLYLSPVTPSNPEFYPENYQYHHYRDDYSL 216
+++ Q + +S+ + ++ +P N N ++ +D+
Sbjct: 46 GTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVN-EHSEAKDEADE 104
Query: 217 DIKYQPEYE---HYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQTPSITIKSSLLSKPKRR 273
+ Q + +V S G N + + Q P T +
Sbjct: 105 ATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMST--RIAEATSAIV 162
Query: 274 QNWSRRKII--------MHTCSHNGCGKTYTKSSHLKAHLRTH 308
R + + C C L AH+ +H
Sbjct: 163 SKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 1.9
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKH 338
+K T + YQC C +L H H
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQC--HVCSAVLFSPLDLDAHVASH 203
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.097
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 338 HTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+G RPF C +C AF+ + + H+K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.4 bits (60), Expect = 0.74
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 308 HTGEKPYQCGWKGCGWKFARSDELTRHFRKHT 339
+G++P+ C + C F RH + HT
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHT 31
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.3 bits (66), Expect = 0.14
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
R + C+ C+R F + L HM H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.3 bits (65), Expect = 0.16
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 284 HTCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
+ C H C + + L+ H+R HTGEK
Sbjct: 4 YVCIH--CQRQFADPGALQRHVRIHTGEK 30
Score = 27.4 bits (60), Expect = 0.69
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
KPY C C +FA L RH R HTG++
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 2.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+P+ C C+R F+ L H++ H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 31.0 bits (69), Expect = 0.19
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCE 350
C + +H R C + C +F + H K + C C
Sbjct: 22 CNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQEHESKCE-YKKLTCLECM 76
Query: 351 RAFSRSDHLSLHMKR 365
R F S + H
Sbjct: 77 RTFKSSFSIWRHQVE 91
Score = 29.1 bits (64), Expect = 0.76
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 302 KAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSL 361
+ ++ YQC C K + E H R C C F +
Sbjct: 5 SSGASPVENKEVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60
Query: 362 HMKRH 366
H +
Sbjct: 61 HESKC 65
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.31
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 309 TGEKPYQCGWKGCGWKFARSDELTRHFRKHTGDR 342
+ KPY+C C + A L H RKHTG++
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGEK 36
Score = 26.7 bits (58), Expect = 1.4
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 339 TGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ +P++C C A + +L++H+++H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.46
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 277 SRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEK 312
S + TC + C K + L+AHLR HT EK
Sbjct: 3 SGSSGKIFTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 30.1 bits (68), Expect = 1.3
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 184 NYSSLYLSPVTPSNPEFYPENYQYHHY--RDDYSLD 217
++++++SP+T P+ + YH Y + Y ++
Sbjct: 56 GFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVN 91
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.8 bits (58), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 342 RPFQCTLCERAFSRSDHLSLHMKRH 366
+PF+C+LCE A +L HM RH
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 28.5 bits (64), Expect = 1.7
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQT-----HHHTQIFQTPSITIKSSLL 267
Y+L K Q H+ V G + + + H Q I + LL
Sbjct: 50 GYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFH----QQKPIEPRRELL 105
Query: 268 SKPKRRQN 275
++P R+++
Sbjct: 106 TQPCRQKD 113
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.0 bits (64), Expect = 1.9
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 324 KFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMKRH 366
+ + T H G++ Q E+ + L +
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.9 bits (56), Expect = 1.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTG 340
+PY C CG +F+ ++ H+R HTG
Sbjct: 2 RPYSC--SVCGKRFSLKHQMETHYRVHTG 28
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 29.1 bits (64), Expect = 2.2
Identities = 13/115 (11%), Positives = 24/115 (20%), Gaps = 6/115 (5%)
Query: 209 HYRDDYSLDIKYQPEYEHYRVNSSSHGNY------NKLHIHPYYQTHHHTQIFQTPSITI 262
DY L + HY +NSS + Q F + +
Sbjct: 44 TSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALL 103
Query: 263 KSSLLSKPKRRQNWSRRKIIMHTCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCG 317
+ + + L + P++ G
Sbjct: 104 EFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKG 158
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody
complex, toxin- system complex; 2.61A {Clostridium
botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A
3zus_A 3zur_A
Length = 1295
Score = 29.4 bits (65), Expect = 2.2
Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 14/191 (7%)
Query: 95 NTPVSNYYIDFNTSNNYKNKPPDQIVPNLLYSE-----------IKKYEDVYKNEPLSAF 143
N +N +FN N N + N I A
Sbjct: 390 NLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLCVRGIITSKTKSLDKGYNKAL 449
Query: 144 VEYSVKSENSSNLSDEHKQTLSCNYN---QYPSQHSIDSSSVNNYSSLYLSPVTPSNPEF 200
+ +K N + + + N + S +I+++ N L N +
Sbjct: 450 NDLCIKVNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAEENISLDLIQQYYLTFNFDN 509
Query: 201 YPENYQYHHYRDDYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQTPSI 260
PEN + D ++ P E + + + + Q H + +
Sbjct: 510 EPENISIENLSSDIIGQLELMPNIERFPNGKKYELDKYTMFHYLRAQEFEHGKSRIALTN 569
Query: 261 TIKSSLLSKPK 271
++ +LL+ +
Sbjct: 570 SVNEALLNPSR 580
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 28.0 bits (63), Expect = 2.3
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNY 237
S+ ++Y+ HYR+N+++ G
Sbjct: 51 QLSISLRYEGRVYHYRINTTADGKV 75
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 28.6 bits (64), Expect = 2.7
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 65 SGEGPPVFIDYTAASDLVQDIIPNVESSTS--------NTPVSNYYIDFNTSNNYKNKPP 116
+ PV ID + A D ++ + S ++ Y I + + +
Sbjct: 188 NARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVV 247
Query: 117 DQIVPNLLYSEIKKYEDVYKNEPLSAFVEY--SVKSENSSNLSD 158
+ P + + I L EY V + ++ S+
Sbjct: 248 PRPRPGVTEATIT---------GLEPGTEYTIYVIALKNNQKSE 282
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding
complex, stress response; HET: ADP; 2.20A {Arabidopsis
thaliana}
Length = 74
Score = 26.8 bits (59), Expect = 2.7
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 285 TCSHNGCGKTYTKSSHLKAHLRTHTGEKPYQCGWKG 320
C + GCG+T+ + + + H G + +G
Sbjct: 11 VCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRG 46
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 26.8 bits (59), Expect = 2.8
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 312 KPYQCGWKGCGWKFARSDELTRHFRKHTGDRPFQCTLCERAFSRSDHLSLHMK 364
C C K +R D L H + R +C C FS H
Sbjct: 15 NVIPC-PNRCPMKLSRRD-LPAHLQHDCPKRRLKCEFCGCDFSGEA-YESHEG 64
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 28.8 bits (63), Expect = 3.0
Identities = 18/179 (10%), Positives = 31/179 (17%), Gaps = 5/179 (2%)
Query: 163 TLSCNYNQYPSQHSIDSSSVNNYSSLYLSPVTPSNPEFYPENYQYHHYRDDYSLDIKYQP 222
T +C N + + NN P S +
Sbjct: 96 TFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCG 155
Query: 223 EYEHYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQTPSITIKSSLLSKPKRRQNWSRRKII 282
+ T T + I
Sbjct: 156 CKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHT 215
Query: 283 MHTCSHN-GCGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELTRHFRKHTG 340
T T+ S L + K ++C + + + K G
Sbjct: 216 AQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAP----IEKTISKTKG 270
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.5 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 344 FQCTLCERAFSRSDHLSLHMKRH 366
++C LCER+F LS H + H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 27.3 bits (61), Expect = 3.2
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 209 HYRDDYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQT 257
Y L + Y YRV+ + G++ H F+
Sbjct: 36 SVPGVYCLCVLYHGYIYTYRVSQTETGSW---SAETAPGVHKRY--FRK 79
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 27.8 bits (62), Expect = 3.2
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 209 HYRDDYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQTHHHTQIFQT 257
Y L + Y YRV+ + G H F+
Sbjct: 36 SVPGVYCLCVLYHGYIYTYRVSQTETG---SWSAETAPGVHKRY--FRK 79
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 28.5 bits (64), Expect = 3.7
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 184 NYSSLYLSPVTPSNPEFYPENYQYHHY--RDDYSLD 217
+++++++PVT P+ YH Y +D YSL+
Sbjct: 56 GFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLN 91
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 26.9 bits (60), Expect = 5.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 211 RDDYSLDIKYQPEYEHYRVNSSSHGNY 237
L + ++ YR+ HG Y
Sbjct: 37 PGALCLCVSFKKLVYSYRIFREKHGYY 63
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 26.8 bits (60), Expect = 5.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNY 237
DY L ++ HY++ + G
Sbjct: 39 DYVLSVRDTQAVRHYKIWRRAGGRL 63
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA
complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA
6MA; 2.05A {Streptococcus pneumoniae}
Length = 257
Score = 27.6 bits (61), Expect = 5.4
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 203 ENYQYHHYRDDYS---LDIKYQPEYEHYRVNSSSHGNY------NKLHIHPYYQTHHHTQ 253
E ++ + ++S D Y + RV + ++ N+ ++ +
Sbjct: 64 EEFELKSKKGNFSSTINDGAYATMMK--RVQADNNPNFFFLTYTKNFEVNNFLVLPKQ-- 119
Query: 254 IFQTPSITIKSSLLSKPKRRQNW 276
F TP I+ L+ R W
Sbjct: 120 -FVTPKSIIQRKPLAPTANRAGW 141
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 26.9 bits (60), Expect = 5.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNY 237
D+SL +K+ + +H++V G Y
Sbjct: 42 DFSLSVKFGNDVQHFKVLRDGAGKY 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.7
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 124 LYSEIKKYEDVYKNEP---LSAFVE 145
L + +K Y D + P + A +E
Sbjct: 25 LQASLKLYAD--DSAPALAIKATME 47
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 26.5 bits (59), Expect = 6.9
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 211 RDDYSLDIKYQPEYEHYRVNSSSHGNY 237
+ Y+ + E +H +N ++ G
Sbjct: 42 QGCYACSVVVDGEVKHCVINKTATGYG 68
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 27.6 bits (61), Expect = 7.4
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 185 YSSLYLSPVTPSNPEFYPENYQYHHYRDDYSLDIK 219
+++++L P + Y + D D K
Sbjct: 164 FTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQK 198
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 24.6 bits (53), Expect = 7.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 314 YQCGWKGCGWKFARSDELTRHFRKHTG 340
Y C ++ CG F +L RH + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 26.4 bits (59), Expect = 7.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNY 237
S+ ++Y+ HYR+N++S G
Sbjct: 40 QRSISLRYEGRVYHYRINTASDGKL 64
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05
2, protein structure initiative, midwest center for
structu genomics; 2.15A {Enterococcus faecalis}
Length = 372
Score = 27.4 bits (61), Expect = 7.8
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 169 NQYPSQHSIDS-SSVNNYSSLYLSPVTPSNPEFYPENYQYHHYRDDYSLDI 218
+ S+ ++ + + L V PS + H R D + D+
Sbjct: 223 DPTISERTMAQFGYYHQTNQFLL-EVAPSESRYLKRILGTHTNRLDAARDV 272
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.1 bits (57), Expect = 7.9
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 291 CGKTYTKSSHLKAHLRTHTGEKPYQCGWKGCGWKFARSDELT 332
CG TY + + ++ +K C GC R +L
Sbjct: 26 CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 26.0 bits (58), Expect = 8.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNY 237
D+SL +K+ + +H++V G Y
Sbjct: 39 DFSLSVKFGNDVQHFKVLRDGAGKY 63
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 27.2 bits (60), Expect = 8.4
Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 11/80 (13%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPY-----------YQTHHHTQIFQTPSIT 261
DY+L + +H R++S K + + + +
Sbjct: 50 DYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRL 109
Query: 262 IKSSLLSKPKRRQNWSRRKI 281
+ + + W +
Sbjct: 110 SEPVPQTNAHESKEWYHASL 129
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 27.4 bits (60), Expect = 8.4
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 17/186 (9%)
Query: 122 NLLYSEIKKYEDVYKNEPLSAFVEYSVKSENSSNLSDEHKQTLSCNYNQYPSQHSIDSSS 181
N Y+ I + + E S K + L D +H +D
Sbjct: 92 NEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQ-- 149
Query: 182 VNNYSSLY--LSPVTPSNPEFYPENYQY-----HHYRDDYSLDIKYQPEYEHYRVNSSSH 234
+Y +L+ L P+ + E + QY DY++ + + + V
Sbjct: 150 --HYRNLHCALRPLDHESYE-FKVISQYLQSTHAPTHSDYTMTL-----LDLFEVEKDGE 201
Query: 235 GNYNKLHIHPYYQTHHHTQIFQTPSITIKSSLLSKPKRRQNWSRRKIIMHTCSHNGCGKT 294
+ +H H +++ I ++ P+ ++ +
Sbjct: 202 KEAFREDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSAN 261
Query: 295 YTKSSH 300
Y +S
Sbjct: 262 YCFASR 267
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 27.2 bits (60), Expect = 9.1
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 209 HYRDDYSLDIKYQPEYEHYRVNSSSHGNY 237
Y L + + + H+ + +G Y
Sbjct: 41 RSLGGYVLSLVHDVRFHHFPIERQLNGTY 69
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 26.1 bits (58), Expect = 9.2
Identities = 1/49 (2%), Positives = 12/49 (24%), Gaps = 8/49 (16%)
Query: 213 DYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHPYYQT--------HHHTQ 253
+ L + + + +++++ + +
Sbjct: 42 AFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQL 90
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 26.3 bits (58), Expect = 9.5
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 211 RDDYSLDIKYQPEYEHYRVNSSSHGNYNKLHIHP------------YYQTHH 250
+DY+L +H R+ S+ K ++ +Y+ H
Sbjct: 62 PNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAH 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.418
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,532,896
Number of extensions: 309636
Number of successful extensions: 1729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1446
Number of HSP's successfully gapped: 554
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)