Query psy1995
Match_columns 211
No_of_seqs 131 out of 1355
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 21:32:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01820 PAF_acetylesterase_lik 100.0 1.4E-39 3.1E-44 253.1 22.2 204 4-210 1-208 (214)
2 cd01841 NnaC_like NnaC (CMP-Ne 100.0 1.3E-33 2.8E-38 212.7 14.9 166 37-210 2-172 (174)
3 cd01828 sialate_O-acetylestera 100.0 3.8E-32 8.3E-37 203.8 15.9 163 38-210 2-166 (169)
4 cd04502 SGNH_hydrolase_like_7 100.0 1.2E-31 2.6E-36 201.6 17.6 166 37-210 1-169 (171)
5 cd01836 FeeA_FeeB_like SGNH_hy 100.0 4.4E-31 9.5E-36 201.7 17.9 165 35-210 2-187 (191)
6 cd01838 Isoamyl_acetate_hydrol 100.0 2E-31 4.4E-36 204.3 12.7 169 37-210 1-197 (199)
7 cd04501 SGNH_hydrolase_like_4 100.0 1.5E-30 3.3E-35 197.5 14.9 167 37-210 2-181 (183)
8 cd01832 SGNH_hydrolase_like_1 100.0 1.8E-29 3.8E-34 191.8 14.1 163 37-210 1-184 (185)
9 cd01827 sialate_O-acetylestera 100.0 3.4E-29 7.5E-34 190.7 15.0 164 36-210 1-185 (188)
10 cd01834 SGNH_hydrolase_like_2 100.0 2.2E-29 4.7E-34 191.8 13.5 170 36-210 2-190 (191)
11 cd01833 XynB_like SGNH_hydrola 100.0 4.6E-29 1E-33 184.8 14.5 152 36-210 1-155 (157)
12 cd01835 SGNH_hydrolase_like_3 100.0 3.8E-29 8.2E-34 191.4 14.1 168 35-210 1-191 (193)
13 cd01821 Rhamnogalacturan_acety 100.0 2.2E-29 4.7E-34 193.5 10.6 168 36-210 1-196 (198)
14 cd01825 SGNH_hydrolase_peri1 S 100.0 4.1E-29 9E-34 190.2 11.2 168 37-210 1-183 (189)
15 cd01844 SGNH_hydrolase_like_6 100.0 2.3E-28 4.9E-33 184.7 15.1 163 37-210 1-175 (177)
16 cd01822 Lysophospholipase_L1_l 100.0 2E-28 4.2E-33 184.6 13.7 160 36-210 1-174 (177)
17 cd01839 SGNH_arylesterase_like 100.0 1.5E-28 3.3E-33 190.2 13.1 162 37-210 1-203 (208)
18 PRK10528 multifunctional acyl- 100.0 1.5E-28 3.1E-33 188.0 11.9 163 33-210 8-181 (191)
19 cd04506 SGNH_hydrolase_YpmR_li 100.0 4.4E-28 9.5E-33 187.0 14.3 169 37-210 1-203 (204)
20 cd01830 XynE_like SGNH_hydrola 100.0 6.3E-28 1.4E-32 186.3 14.1 165 37-209 1-201 (204)
21 KOG3035|consensus 99.9 2.6E-26 5.7E-31 171.4 9.1 171 34-210 5-206 (245)
22 cd01829 SGNH_hydrolase_peri2 S 99.9 2.4E-25 5.2E-30 171.1 12.6 163 37-210 1-196 (200)
23 cd01840 SGNH_hydrolase_yrhL_li 99.9 2E-25 4.3E-30 164.3 10.1 147 37-210 1-148 (150)
24 cd01831 Endoglucanase_E_like E 99.9 2.8E-24 6.1E-29 161.2 15.5 144 37-210 1-166 (169)
25 PF13472 Lipase_GDSL_2: GDSL-l 99.9 3.3E-25 7.1E-30 165.9 10.4 159 39-204 1-179 (179)
26 cd01823 SEST_like SEST_like. A 99.9 6.4E-24 1.4E-28 169.6 15.7 169 37-210 2-258 (259)
27 cd00229 SGNH_hydrolase SGNH_hy 99.9 4E-23 8.7E-28 154.2 14.7 166 38-211 1-187 (187)
28 PF14606 Lipase_GDSL_3: GDSL-l 99.9 3.1E-22 6.7E-27 148.6 7.4 163 36-211 2-176 (178)
29 COG2755 TesA Lysophospholipase 99.8 4.3E-20 9.3E-25 143.6 12.6 168 37-210 10-206 (216)
30 PF00657 Lipase_GDSL: GDSL-lik 99.8 6E-20 1.3E-24 143.4 3.6 165 38-208 1-234 (234)
31 cd01824 Phospholipase_B_like P 99.8 8.3E-18 1.8E-22 135.9 13.5 146 63-209 83-280 (288)
32 COG2845 Uncharacterized protei 99.7 1E-16 2.3E-21 126.8 11.2 167 33-210 114-315 (354)
33 cd01826 acyloxyacyl_hydrolase_ 99.7 1.9E-15 4.1E-20 120.6 14.8 147 64-211 94-305 (305)
34 cd01846 fatty_acyltransferase_ 99.6 2.8E-14 6.1E-19 114.6 11.9 148 62-210 55-269 (270)
35 cd01842 SGNH_hydrolase_like_5 99.5 3.3E-13 7E-18 99.4 9.3 118 85-210 45-180 (183)
36 cd01847 Triacylglycerol_lipase 99.2 5.9E-10 1.3E-14 90.2 13.8 146 63-210 59-279 (281)
37 PRK15381 pathogenicity island 99.2 3.2E-10 6.9E-15 95.3 10.5 173 35-210 142-399 (408)
38 KOG1388|consensus 99.0 8.1E-12 1.7E-16 93.9 -4.3 191 2-210 5-196 (217)
39 PF04311 DUF459: Protein of un 98.7 4.4E-08 9.5E-13 79.9 8.0 164 36-208 38-233 (327)
40 PF13839 PC-Esterase: GDSL/SGN 98.7 2.3E-07 4.9E-12 74.0 11.3 117 90-210 100-259 (263)
41 cd01837 SGNH_plant_lipase_like 98.7 2.1E-07 4.5E-12 76.5 9.9 120 90-210 128-313 (315)
42 KOG3670|consensus 98.6 8.4E-07 1.8E-11 73.1 11.6 73 66-138 151-242 (397)
43 PLN03156 GDSL esterase/lipase; 98.4 2.3E-06 4.9E-11 71.4 8.7 118 92-210 159-344 (351)
44 PF08885 GSCFA: GSCFA family; 98.2 2.2E-05 4.7E-10 62.2 10.3 114 89-207 100-250 (251)
45 PF07611 DUF1574: Protein of u 98.1 7.6E-05 1.7E-09 61.5 12.5 166 33-210 61-341 (345)
46 PF04914 DltD_C: DltD C-termin 97.3 0.0016 3.6E-08 46.3 7.7 86 111-209 35-124 (130)
47 COG3240 Phospholipase/lecithin 97.0 0.0027 5.9E-08 52.5 7.3 111 96-210 167-331 (370)
48 PF03629 DUF303: Domain of unk 96.5 0.02 4.3E-07 45.6 8.4 104 89-210 142-250 (255)
49 TIGR02171 Fb_sc_TIGR02171 Fibr 94.8 1.7 3.8E-05 40.5 14.7 89 112-209 808-905 (912)
50 cd06533 Glyco_transf_WecG_TagA 88.4 1.4 3.1E-05 32.8 5.5 95 24-134 35-132 (171)
51 PF03808 Glyco_tran_WecB: Glyc 87.0 1.8 3.8E-05 32.4 5.3 89 24-128 37-128 (172)
52 TIGR00696 wecB_tagA_cpsF bacte 84.0 3.3 7.2E-05 31.1 5.5 74 24-100 37-110 (177)
53 cd02067 B12-binding B12 bindin 79.3 13 0.00028 25.5 6.9 64 60-136 26-90 (119)
54 PF00072 Response_reg: Respons 76.8 7.6 0.00016 25.7 5.0 48 74-135 32-79 (112)
55 TIGR00067 glut_race glutamate 75.8 19 0.00041 28.7 7.6 63 63-135 2-69 (251)
56 PF05872 DUF853: Bacterial pro 75.0 23 0.0005 30.9 8.2 49 87-140 251-303 (502)
57 KOG0393|consensus 72.1 13 0.00028 28.6 5.5 45 87-135 73-117 (198)
58 PRK15180 Vi polysaccharide bio 71.8 29 0.00063 30.6 8.0 93 106-208 171-267 (831)
59 PRK10840 transcriptional regul 71.5 32 0.00069 26.1 7.8 44 88-137 47-90 (216)
60 PF02283 CobU: Cobinamide kina 68.1 18 0.00039 26.9 5.5 54 107-162 96-155 (167)
61 PRK00865 glutamate racemase; P 67.8 35 0.00075 27.3 7.5 65 61-135 7-75 (261)
62 COG2333 ComEC Predicted hydrol 67.7 28 0.0006 28.5 6.9 83 33-132 180-265 (293)
63 cd00544 CobU Adenosylcobinamid 65.6 26 0.00057 26.0 6.0 53 108-162 99-157 (169)
64 PRK06524 biotin carboxylase-li 64.3 11 0.00023 33.2 4.1 51 108-176 13-63 (493)
65 PRK05800 cobU adenosylcobinami 63.5 27 0.00058 26.0 5.7 53 108-162 99-157 (170)
66 PRK09483 response regulator; P 59.9 69 0.0015 23.8 8.1 40 88-136 45-84 (217)
67 COG2197 CitB Response regulato 59.9 24 0.00053 27.2 5.1 66 88-162 44-120 (211)
68 PRK10046 dpiA two-component re 57.9 83 0.0018 24.1 7.9 82 35-137 4-88 (225)
69 PRK10100 DNA-binding transcrip 57.7 31 0.00067 26.7 5.4 40 90-137 52-91 (216)
70 PRK05086 malate dehydrogenase; 57.7 33 0.00071 28.3 5.8 49 89-138 68-121 (312)
71 KOG1344|consensus 57.2 19 0.00041 28.4 4.0 64 70-135 225-299 (324)
72 PRK03692 putative UDP-N-acetyl 56.8 34 0.00074 27.1 5.5 13 88-100 155-167 (243)
73 COG2087 CobU Adenosyl cobinami 56.2 75 0.0016 23.8 6.8 53 108-162 103-161 (175)
74 cd02068 radical_SAM_B12_BD B12 56.1 33 0.00072 23.8 4.9 42 89-138 38-79 (127)
75 PF01446 Rep_1: Replication pr 56.1 69 0.0015 25.3 7.1 51 112-162 5-55 (233)
76 COG3882 FkbH Predicted enzyme 54.9 1.1E+02 0.0024 27.1 8.4 170 34-209 18-211 (574)
77 COG3966 DltD Protein involved 54.1 60 0.0013 27.4 6.5 85 112-209 295-384 (415)
78 PRK15411 rcsA colanic acid cap 53.5 35 0.00076 26.1 5.0 40 88-136 45-86 (207)
79 PF02896 PEP-utilizers_C: PEP- 53.5 11 0.00024 30.8 2.3 41 95-137 200-258 (293)
80 cd00300 LDH_like L-lactate deh 53.2 33 0.0007 28.1 5.1 47 89-135 65-116 (300)
81 KOG2792|consensus 52.9 97 0.0021 24.9 7.3 72 89-162 137-221 (280)
82 cd02070 corrinoid_protein_B12- 52.9 82 0.0018 24.0 7.0 63 60-135 109-173 (201)
83 PF06057 VirJ: Bacterial virul 52.8 23 0.00049 27.1 3.7 31 105-135 45-75 (192)
84 PTZ00063 histone deacetylase; 52.7 22 0.00048 30.8 4.1 44 85-134 245-296 (436)
85 COG0123 AcuC Deacetylases, inc 52.6 46 0.001 27.9 5.9 49 85-134 234-290 (340)
86 PTZ00346 histone deacetylase; 52.3 22 0.00048 30.7 4.0 43 85-133 263-313 (429)
87 PF04321 RmlD_sub_bind: RmlD s 52.2 13 0.00029 30.0 2.6 91 37-135 2-101 (286)
88 COG1922 WecG Teichoic acid bio 52.2 40 0.00087 26.9 5.2 73 25-101 98-172 (253)
89 PF00056 Ldh_1_N: lactate/mala 51.9 46 0.00099 23.8 5.1 47 89-135 68-119 (141)
90 PF06935 DUF1284: Protein of u 51.6 34 0.00074 23.2 4.2 28 107-135 3-30 (103)
91 PF12683 DUF3798: Protein of u 51.6 35 0.00077 27.5 4.8 95 63-175 66-170 (275)
92 COG4565 CitB Response regulato 51.2 66 0.0014 25.1 6.0 78 37-135 2-82 (224)
93 PLN00135 malate dehydrogenase 51.1 42 0.0009 27.7 5.3 49 89-138 57-111 (309)
94 PRK00066 ldh L-lactate dehydro 50.6 40 0.00087 27.8 5.2 47 89-135 72-123 (315)
95 PF02630 SCO1-SenC: SCO1/SenC; 50.5 78 0.0017 23.5 6.4 56 90-145 51-106 (174)
96 COG0796 MurI Glutamate racemas 49.2 1.4E+02 0.003 24.2 7.8 65 61-135 7-75 (269)
97 PF13552 DUF4127: Protein of u 48.4 95 0.0021 27.5 7.4 51 89-140 57-116 (497)
98 cd03412 CbiK_N Anaerobic cobal 48.4 62 0.0013 22.7 5.3 35 93-132 3-37 (127)
99 PF02310 B12-binding: B12 bind 47.9 77 0.0017 21.4 5.7 63 61-136 28-90 (121)
100 KOG2126|consensus 47.2 14 0.00031 34.5 2.2 128 25-162 144-287 (895)
101 COG4030 Uncharacterized protei 46.8 20 0.00044 28.2 2.7 89 30-135 201-290 (315)
102 PTZ00325 malate dehydrogenase; 45.4 63 0.0014 26.8 5.6 47 89-135 75-126 (321)
103 PF14286 DHHW: DHHW protein 45.1 1.1E+02 0.0024 26.0 7.1 93 111-210 153-251 (378)
104 PRK11475 DNA-binding transcrip 45.1 58 0.0013 25.0 5.1 40 88-136 35-77 (207)
105 TIGR01772 MDH_euk_gproteo mala 45.1 63 0.0014 26.7 5.5 50 88-138 65-119 (312)
106 TIGR01763 MalateDH_bact malate 44.9 72 0.0016 26.2 5.9 47 89-135 68-119 (305)
107 PF00994 MoCF_biosynth: Probab 44.9 20 0.00044 25.6 2.4 85 38-125 2-100 (144)
108 COG2403 Predicted GTPase [Gene 44.8 69 0.0015 27.4 5.6 24 110-133 282-305 (449)
109 PRK10239 2-amino-4-hydroxy-6-h 44.8 62 0.0013 23.9 4.9 37 93-135 3-39 (159)
110 PRK11061 fused phosphoenolpyru 44.4 28 0.00061 32.5 3.7 41 95-137 614-672 (748)
111 PRK03670 competence damage-ind 43.6 1.5E+02 0.0031 23.7 7.2 63 37-101 4-71 (252)
112 cd05291 HicDH_like L-2-hydroxy 42.2 63 0.0014 26.4 5.1 47 89-135 67-118 (306)
113 cd05293 LDH_1 A subgroup of L- 42.1 60 0.0013 26.8 5.0 47 89-135 70-121 (312)
114 PF05762 VWA_CoxE: VWA domain 42.0 1.4E+02 0.0031 23.0 6.9 45 90-143 150-195 (222)
115 PTZ00317 NADP-dependent malic 41.3 53 0.0011 29.5 4.7 62 67-129 166-244 (559)
116 cd01337 MDH_glyoxysomal_mitoch 41.3 69 0.0015 26.4 5.2 49 88-136 66-119 (310)
117 COG5039 Exopolysaccharide bios 41.1 1.2E+02 0.0026 25.0 6.3 38 92-134 88-125 (339)
118 PLN03129 NADP-dependent malic 41.0 58 0.0012 29.4 4.9 65 67-132 189-271 (581)
119 cd01338 MDH_choloroplast_like 40.7 74 0.0016 26.4 5.3 49 89-138 77-131 (322)
120 cd00650 LDH_MDH_like NAD-depen 40.6 73 0.0016 25.3 5.2 47 89-135 69-120 (263)
121 PRK13529 malate dehydrogenase; 40.3 71 0.0015 28.7 5.3 61 67-128 164-241 (563)
122 TIGR01771 L-LDH-NAD L-lactate 40.3 60 0.0013 26.5 4.7 47 89-135 63-114 (299)
123 TIGR02667 moaB_proteo molybden 40.2 68 0.0015 23.6 4.6 76 35-111 6-86 (163)
124 TIGR01759 MalateDH-SF1 malate 40.1 77 0.0017 26.3 5.3 49 89-138 78-132 (323)
125 PF06418 CTP_synth_N: CTP synt 39.9 1E+02 0.0023 24.9 5.7 61 76-139 120-180 (276)
126 PF08495 FIST: FIST N domain; 39.8 60 0.0013 24.1 4.4 37 90-135 1-37 (198)
127 PLN02602 lactate dehydrogenase 39.1 87 0.0019 26.3 5.5 47 89-135 104-155 (350)
128 PRK14092 2-amino-4-hydroxy-6-h 38.9 1.1E+02 0.0024 22.7 5.4 38 92-135 8-45 (163)
129 COG1058 CinA Predicted nucleot 38.7 60 0.0013 26.0 4.3 62 36-100 4-70 (255)
130 cd05294 LDH-like_MDH_nadp A la 38.5 1.1E+02 0.0025 25.0 6.1 47 89-135 71-122 (309)
131 TIGR00361 ComEC_Rec2 DNA inter 38.3 1.3E+02 0.0028 27.7 7.0 70 33-110 572-644 (662)
132 PF09370 TIM-br_sig_trns: TIM- 38.1 94 0.002 25.1 5.3 50 89-139 169-225 (268)
133 PF08759 DUF1792: Domain of un 37.6 1E+02 0.0022 24.2 5.2 51 89-140 114-180 (225)
134 PRK10430 DNA-binding transcrip 37.5 88 0.0019 24.1 5.2 39 89-136 48-86 (239)
135 PF03618 Kinase-PPPase: Kinase 37.3 63 0.0014 25.9 4.2 48 113-179 41-88 (255)
136 PLN00106 malate dehydrogenase 37.1 94 0.002 25.8 5.4 50 89-139 85-139 (323)
137 cd01339 LDH-like_MDH L-lactate 37.0 95 0.0021 25.2 5.4 47 89-135 65-116 (300)
138 cd02071 MM_CoA_mut_B12_BD meth 37.0 1.4E+02 0.003 20.6 7.1 61 60-133 26-87 (122)
139 TIGR00288 conserved hypothetic 36.9 1.1E+02 0.0024 22.6 5.2 34 89-135 104-137 (160)
140 PF10087 DUF2325: Uncharacteri 36.9 1.1E+02 0.0024 20.1 4.9 36 89-134 47-82 (97)
141 COG0429 Predicted hydrolase of 36.4 74 0.0016 26.6 4.6 95 38-135 53-155 (345)
142 COG3947 Response regulator con 36.3 71 0.0015 26.4 4.3 40 88-136 42-81 (361)
143 PF03796 DnaB_C: DnaB-like hel 36.0 88 0.0019 24.7 5.0 65 105-177 112-179 (259)
144 PRK09417 mogA molybdenum cofac 36.0 70 0.0015 24.4 4.2 66 35-101 5-77 (193)
145 PF00850 Hist_deacetyl: Histon 36.0 21 0.00046 29.4 1.4 47 86-134 236-290 (311)
146 PF00919 UPF0004: Uncharacteri 35.7 1.3E+02 0.0029 20.0 5.9 48 88-140 34-82 (98)
147 PRK09935 transcriptional regul 35.7 1.2E+02 0.0026 22.2 5.6 41 88-137 47-87 (210)
148 cd00704 MDH Malate dehydrogena 35.6 95 0.0021 25.7 5.2 49 89-138 75-129 (323)
149 PF07507 WavE: WavE lipopolysa 35.5 47 0.001 27.5 3.4 21 114-134 22-42 (311)
150 PF09363 XFP_C: XFP C-terminal 35.2 1.6E+02 0.0035 22.7 5.9 41 88-136 32-72 (203)
151 cd04131 Rnd Rnd subfamily. Th 35.1 1.7E+02 0.0037 21.5 6.2 43 89-135 71-113 (178)
152 PLN02629 powdery mildew resist 34.8 21 0.00046 30.4 1.3 32 108-139 243-276 (387)
153 PF06866 DUF1256: Protein of u 34.7 1.6E+02 0.0034 21.9 5.6 46 90-135 24-94 (163)
154 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 34.6 1.8E+02 0.0039 21.6 6.3 43 89-135 75-117 (182)
155 PF15127 DUF4565: Protein of u 34.4 27 0.00058 23.0 1.4 25 149-173 63-87 (91)
156 cd04121 Rab40 Rab40 subfamily. 34.3 1.7E+02 0.0037 21.9 6.1 42 89-135 77-118 (189)
157 TIGR01387 cztR_silR_copR heavy 34.1 1.2E+02 0.0027 22.3 5.4 40 88-136 40-79 (218)
158 PRK10336 DNA-binding transcrip 34.1 1.3E+02 0.0028 22.2 5.5 40 89-137 43-82 (219)
159 COG0420 SbcD DNA repair exonuc 33.8 2E+02 0.0044 24.3 7.1 17 108-124 23-39 (390)
160 COG1856 Uncharacterized homolo 33.5 1.4E+02 0.0031 23.6 5.4 68 65-140 156-232 (275)
161 PRK05339 PEP synthetase regula 33.4 77 0.0017 25.6 4.2 47 114-179 48-94 (269)
162 PRK05442 malate dehydrogenase; 33.0 1.8E+02 0.0038 24.2 6.4 49 89-138 79-133 (326)
163 cd08163 MPP_Cdc1 Saccharomyces 32.4 1.1E+02 0.0024 24.4 4.9 11 89-99 44-54 (257)
164 PF00390 malic: Malic enzyme, 32.4 62 0.0013 24.5 3.3 45 88-132 104-166 (182)
165 PRK11177 phosphoenolpyruvate-p 32.2 60 0.0013 29.3 3.7 40 95-136 448-505 (575)
166 PF03652 UPF0081: Uncharacteri 32.0 1.9E+02 0.0041 20.6 5.8 46 88-134 49-94 (135)
167 TIGR02841 spore_YyaC putative 31.9 1.2E+02 0.0027 21.8 4.5 23 112-134 47-69 (140)
168 PRK00109 Holliday junction res 31.8 1.9E+02 0.0042 20.6 7.5 55 114-175 43-98 (138)
169 PRK10017 colanic acid biosynth 31.4 71 0.0015 27.6 4.0 30 112-141 18-47 (426)
170 PRK11083 DNA-binding response 31.3 1.4E+02 0.003 22.2 5.3 41 88-137 45-85 (228)
171 cd05290 LDH_3 A subgroup of L- 31.2 1.6E+02 0.0035 24.2 5.8 47 89-135 67-120 (307)
172 PF13242 Hydrolase_like: HAD-h 31.0 44 0.00096 20.7 2.1 17 32-48 18-34 (75)
173 COG0552 FtsY Signal recognitio 30.6 2.5E+02 0.0055 23.5 6.8 72 93-178 140-233 (340)
174 cd00885 cinA Competence-damage 30.6 82 0.0018 23.4 3.7 63 36-101 2-69 (170)
175 COG4753 Response regulator con 30.1 1E+02 0.0022 27.2 4.6 57 61-137 27-86 (475)
176 cd01336 MDH_cytoplasmic_cytoso 30.0 2.1E+02 0.0046 23.7 6.4 49 89-138 77-131 (325)
177 COG1080 PtsA Phosphoenolpyruva 30.0 61 0.0013 29.1 3.3 39 95-135 449-505 (574)
178 PF06215 ISAV_HA: Infectious s 30.0 73 0.0016 25.9 3.4 69 34-104 22-92 (391)
179 KOG0541|consensus 29.9 72 0.0016 23.6 3.1 48 54-104 36-91 (171)
180 PF00071 Ras: Ras family; Int 29.8 2E+02 0.0043 20.2 5.7 42 89-135 70-112 (162)
181 TIGR01758 MDH_euk_cyt malate d 29.8 1.3E+02 0.0028 24.9 5.1 49 89-138 74-128 (324)
182 PF06309 Torsin: Torsin; Inte 29.7 1.6E+02 0.0035 20.9 4.8 42 88-129 81-124 (127)
183 KOG3662|consensus 29.7 3.7E+02 0.0081 23.3 8.3 119 18-137 77-218 (410)
184 PRK10816 DNA-binding transcrip 29.6 1.6E+02 0.0035 21.9 5.4 41 88-137 42-82 (223)
185 PF03709 OKR_DC_1_N: Orn/Lys/A 29.4 1.3E+02 0.0028 20.6 4.3 51 73-135 25-75 (115)
186 KOG1532|consensus 29.3 2.1E+02 0.0046 23.6 5.9 10 33-42 17-26 (366)
187 COG3946 VirJ Type IV secretory 29.2 1E+02 0.0022 26.6 4.4 31 105-135 303-333 (456)
188 PF01085 HH_signal: Hedgehog a 29.2 90 0.002 23.0 3.5 71 65-136 30-104 (160)
189 COG0378 HypB Ni2+-binding GTPa 29.1 2.7E+02 0.0059 21.5 9.2 26 110-135 158-183 (202)
190 PF01083 Cutinase: Cutinase; 28.9 98 0.0021 23.1 3.9 27 109-135 62-88 (179)
191 PRK06223 malate dehydrogenase; 28.7 1.3E+02 0.0028 24.4 4.9 47 89-135 69-120 (307)
192 KOG1495|consensus 28.6 1.4E+02 0.003 24.4 4.8 48 88-135 86-138 (332)
193 COG0039 Mdh Malate/lactate deh 28.6 2.6E+02 0.0057 23.2 6.6 47 89-135 68-119 (313)
194 PTZ00082 L-lactate dehydrogena 28.2 1.3E+02 0.0028 24.9 4.9 47 89-135 73-129 (321)
195 TIGR01279 DPOR_bchN light-inde 28.1 3.1E+02 0.0067 23.5 7.3 43 87-135 81-123 (407)
196 TIGR02717 AcCoA-syn-alpha acet 28.0 2.9E+02 0.0064 24.0 7.2 113 34-175 6-128 (447)
197 cd08166 MPP_Cdc1_like_1 unchar 27.9 2.3E+02 0.0051 21.7 5.8 10 89-98 41-50 (195)
198 cd03113 CTGs CTP synthetase (C 27.6 1.9E+02 0.0041 23.2 5.3 60 76-138 119-178 (255)
199 COG1004 Ugd Predicted UDP-gluc 27.5 4.1E+02 0.0088 23.0 7.9 64 89-162 75-140 (414)
200 KOG2495|consensus 27.3 3.4E+02 0.0075 23.8 7.1 87 88-176 156-265 (491)
201 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 27.2 2.6E+02 0.0057 21.6 6.2 43 89-135 71-113 (222)
202 PHA02542 41 41 helicase; Provi 27.1 2E+02 0.0043 25.3 6.0 59 115-177 288-353 (473)
203 TIGR01417 PTS_I_fam phosphoeno 27.0 1E+02 0.0022 27.9 4.2 41 95-137 447-505 (565)
204 KOG1342|consensus 26.9 92 0.002 26.6 3.6 49 85-135 247-299 (425)
205 PF06183 DinI: DinI-like famil 26.6 1.2E+02 0.0026 18.7 3.3 52 110-161 6-58 (65)
206 smart00174 RHO Rho (Ras homolo 26.5 2.4E+02 0.0052 20.1 6.3 43 89-135 68-110 (174)
207 cd00984 DnaB_C DnaB helicase C 26.2 2.4E+02 0.0052 21.7 5.9 45 127-175 123-170 (242)
208 cd05292 LDH_2 A subgroup of L- 26.0 1.7E+02 0.0037 24.0 5.1 47 89-135 66-117 (308)
209 PF03481 SUA5: Putative GTP-bi 25.8 2.3E+02 0.005 19.6 6.2 33 105-139 78-110 (125)
210 PTZ00117 malate dehydrogenase; 25.7 1.9E+02 0.0042 23.8 5.4 47 89-135 72-123 (319)
211 PRK10128 2-keto-3-deoxy-L-rham 25.5 64 0.0014 26.0 2.5 38 91-130 168-213 (267)
212 PRK09468 ompR osmolarity respo 25.3 1.9E+02 0.0042 21.8 5.2 40 88-136 47-86 (239)
213 COG1570 XseA Exonuclease VII, 25.3 2.8E+02 0.006 24.2 6.3 27 111-137 146-172 (440)
214 cd06259 YdcF-like YdcF-like. Y 25.2 2.3E+02 0.0049 20.0 5.2 27 108-135 17-43 (150)
215 PRK09958 DNA-binding transcrip 25.1 2.2E+02 0.0048 20.7 5.4 40 88-136 43-82 (204)
216 COG0801 FolK 7,8-dihydro-6-hyd 25.0 1.7E+02 0.0036 21.7 4.4 37 93-135 3-39 (160)
217 PF06180 CbiK: Cobalt chelatas 25.0 72 0.0016 25.7 2.7 37 93-133 3-39 (262)
218 PF12636 DUF3781: Protein of u 24.9 45 0.00098 21.1 1.2 17 192-208 6-22 (73)
219 PRK05096 guanosine 5'-monophos 24.8 1.1E+02 0.0024 25.7 3.8 36 89-132 121-156 (346)
220 KOG1838|consensus 24.8 1E+02 0.0022 26.6 3.6 26 110-135 180-205 (409)
221 TIGR00177 molyb_syn molybdenum 24.6 1.3E+02 0.0028 21.4 3.8 63 36-101 3-77 (144)
222 cd00758 MoCF_BD MoCF_BD: molyb 24.6 1.5E+02 0.0032 20.8 4.0 63 36-101 2-69 (133)
223 PRK08006 replicative DNA helic 24.6 2E+02 0.0043 25.3 5.5 56 118-177 327-385 (471)
224 PRK08506 replicative DNA helic 24.5 2.2E+02 0.0047 25.0 5.8 54 118-175 293-349 (472)
225 COG3007 Uncharacterized paraqu 24.5 80 0.0017 26.1 2.8 16 33-48 39-54 (398)
226 cd08071 MPN_DUF2466 Mov34/MPN/ 24.3 2.4E+02 0.0052 19.3 6.2 54 115-175 49-102 (113)
227 TIGR01452 PGP_euk phosphoglyco 24.1 3.4E+02 0.0074 21.6 6.6 13 33-45 217-229 (279)
228 cd04910 ACT_AK-Ectoine_1 ACT d 23.8 92 0.002 19.6 2.5 42 89-130 28-69 (71)
229 KOG3662|consensus 23.8 3.4E+02 0.0074 23.5 6.5 90 88-178 91-184 (410)
230 PF04456 DUF503: Protein of un 23.8 2.2E+02 0.0048 18.7 4.9 42 89-131 33-85 (90)
231 PRK12354 carbamate kinase; Rev 23.6 2.3E+02 0.0049 23.5 5.3 42 93-134 2-48 (307)
232 PLN00112 malate dehydrogenase 23.4 1.6E+02 0.0034 25.8 4.6 47 89-135 175-227 (444)
233 TIGR02026 BchE magnesium-proto 23.4 2.8E+02 0.006 24.5 6.3 43 88-138 61-103 (497)
234 PF08283 Gemini_AL1_M: Geminiv 23.3 32 0.00069 23.6 0.3 31 16-46 70-101 (106)
235 TIGR03600 phage_DnaB phage rep 23.2 2.9E+02 0.0063 23.6 6.3 57 117-177 295-353 (421)
236 PRK11539 ComEC family competen 23.2 1.7E+02 0.0036 27.5 5.1 72 33-112 629-704 (755)
237 TIGR00583 mre11 DNA repair pro 23.2 2.9E+02 0.0063 23.8 6.2 50 108-160 25-74 (405)
238 PF05141 DIT1_PvcA: Pyoverdine 23.2 1.5E+02 0.0032 24.2 4.2 67 110-177 41-109 (278)
239 PRK09836 DNA-binding transcrip 23.1 2.6E+02 0.0055 20.9 5.5 41 88-137 42-82 (227)
240 COG3605 PtsP Signal transducti 23.1 90 0.0019 28.4 3.1 39 95-135 622-678 (756)
241 cd06266 RNaseH_typeII Ribonucl 23.1 3.3E+02 0.0072 20.5 7.2 106 95-209 30-144 (193)
242 PF06187 DUF993: Protein of un 22.9 2E+02 0.0044 24.2 4.8 63 69-135 87-153 (382)
243 TIGR01305 GMP_reduct_1 guanosi 22.8 1.3E+02 0.0027 25.3 3.7 33 89-129 120-152 (343)
244 PF04413 Glycos_transf_N: 3-De 22.3 1.1E+02 0.0024 23.1 3.1 34 105-139 29-62 (186)
245 PF04430 DUF498: Protein of un 22.2 2.6E+02 0.0056 18.9 6.3 51 88-158 51-101 (110)
246 TIGR01757 Malate-DH_plant mala 22.2 1.8E+02 0.004 24.9 4.7 49 89-138 119-173 (387)
247 PF02836 Glyco_hydro_2_C: Glyc 22.0 2.6E+02 0.0055 22.6 5.5 42 88-135 118-159 (298)
248 PRK09279 pyruvate phosphate di 21.9 1.1E+02 0.0024 29.2 3.6 10 95-104 763-772 (879)
249 cd07384 MPP_Cdc1_like Saccharo 21.7 3.4E+02 0.0073 20.0 5.7 60 76-136 32-96 (171)
250 PRK10966 exonuclease subunit S 21.6 2.2E+02 0.0047 24.5 5.1 11 88-98 37-47 (407)
251 COG3457 Predicted amino acid r 21.5 4.9E+02 0.011 21.8 7.1 74 88-162 115-190 (353)
252 cd04129 Rho2 Rho2 subfamily. 21.4 3.3E+02 0.0073 19.9 6.2 43 89-135 71-113 (187)
253 cd03411 Ferrochelatase_N Ferro 21.4 3.3E+02 0.0071 19.8 6.8 56 114-175 101-156 (159)
254 PRK10403 transcriptional regul 21.2 2.8E+02 0.0061 20.1 5.3 40 88-136 50-89 (215)
255 cd00886 MogA_MoaB MogA_MoaB fa 21.2 1.8E+02 0.0038 21.0 4.0 76 36-112 3-85 (152)
256 TIGR03728 glyco_access_1 glyco 21.2 2.6E+02 0.0057 22.5 5.1 51 89-140 132-198 (265)
257 cd04133 Rop_like Rop subfamily 20.9 3.5E+02 0.0075 19.9 6.2 43 89-135 71-113 (176)
258 PRK10651 transcriptional regul 20.7 3.1E+02 0.0068 19.9 5.5 40 88-136 50-89 (216)
259 PRK10643 DNA-binding transcrip 20.7 2.7E+02 0.0058 20.5 5.1 39 89-136 43-81 (222)
260 PF13692 Glyco_trans_1_4: Glyc 20.6 1.9E+02 0.0041 19.6 3.9 21 117-137 24-44 (135)
261 TIGR01418 PEP_synth phosphoeno 20.6 1.3E+02 0.0028 28.4 3.8 38 95-134 687-742 (782)
262 TIGR00250 RNAse_H_YqgF RNAse H 20.6 3.1E+02 0.0068 19.3 7.5 24 147-175 69-92 (130)
263 COG1519 KdtA 3-deoxy-D-manno-o 20.5 1.5E+02 0.0031 25.7 3.7 34 105-139 57-90 (419)
264 PF07745 Glyco_hydro_53: Glyco 20.5 3.6E+02 0.0077 22.6 6.0 129 76-210 114-278 (332)
265 PRK14476 nitrogenase molybdenu 20.3 3E+02 0.0065 24.0 5.8 55 75-135 78-135 (455)
266 smart00852 MoCF_biosynth Proba 20.3 2.4E+02 0.0051 19.7 4.4 61 38-101 2-68 (135)
267 TIGR01574 miaB-methiolase tRNA 20.2 2.6E+02 0.0057 24.2 5.4 48 88-139 35-84 (438)
No 1
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=100.00 E-value=1.4e-39 Score=253.11 Aligned_cols=204 Identities=42% Similarity=0.744 Sum_probs=179.3
Q ss_pred CCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcc--hhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995 4 PCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQT--QIWHNLFEPLHCLAFGIGGDKVEHCLWRV 81 (211)
Q Consensus 4 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~--~~~~~~~~~~~~~n~g~~G~~~~~~~~~~ 81 (211)
|++-+.+..+.-+.++|++++.+++...+.++.+|+|+|||+|+|++.. ..|.+.+.+..++|+|++|.++.++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~lGDSit~g~~~~~~~~~~~~~~~~~v~N~Gi~G~tt~~~l~r~ 80 (214)
T cd01820 1 PAAAPTPVDDLDGDPRWMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTGLEVWRELYAPLHALNFGIGGDRTQNVLWRL 80 (214)
T ss_pred CCCCCcCCcccccchhHHHHHHHHHHHhhcCCCCEEEECchHhhhhcccchHHHHHHcCcCCeEeeeeccccHhHHHHHH
Confidence 6677778888888899999999999998889999999999999999765 56888888999999999999999999999
Q ss_pred hcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHH
Q psy1995 82 QDGILDSIKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADK 159 (211)
Q Consensus 82 ~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~ 159 (211)
....+...+||+|||++|+||.. .+++++.+++.++++.+++++|+++|++++++|....+....+.+.++|+.+++.
T Consensus 81 ~~~~l~~~~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~~~~~~~~~~~n~~l~~~ 160 (214)
T cd01820 81 ENGELDGVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNPNPLRERNAQVNRLLAVR 160 (214)
T ss_pred hcCCccCCCCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCchhHHHHHHHHHHHHHHH
Confidence 76556557899999999999998 4689999999999999999999999999999887764445567789999999998
Q ss_pred hCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 160 LSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 160 ~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
|++ ..++.|+|++..+.+.++.....++.||+|||++||++|++.|.+
T Consensus 161 ~~~---~~~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~~ 208 (214)
T cd01820 161 YDG---LPNVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALHP 208 (214)
T ss_pred hcC---CCCEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHHH
Confidence 876 479999999998877666666667799999999999999998865
No 2
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=100.00 E-value=1.3e-33 Score=212.65 Aligned_cols=166 Identities=20% Similarity=0.262 Sum_probs=142.5
Q ss_pred cEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAENIADGI 114 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~~ 114 (211)
+|||+|||+|+||.... ....+..+.|.|++|.++.+++++++.... ..+||+|+|++|+||.. .+++++.+++
T Consensus 2 ~iv~~GdS~t~~~~~~~---~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~-~~~pd~v~i~~G~ND~~~~~~~~~~~~~~ 77 (174)
T cd01841 2 NIVFIGDSLFEGWPLYE---AEGKGKTVNNLGIAGISSRQYLEHIEPQLI-QKNPSKVFLFLGTNDIGKEVSSNQFIKWY 77 (174)
T ss_pred CEEEEcchhhhcCchhh---hccCCCeEEecccccccHHHHHHHHHHHHH-hcCCCEEEEEeccccCCCCCCHHHHHHHH
Confidence 69999999999987532 225678899999999999999999965344 68999999999999997 6789999999
Q ss_pred HHHHHHHHhhCCCCeEEEEeccCCCCcc---chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCC
Q psy1995 115 LELIRLVQTKQPQADVVVLELLPRGKLI---NKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFY 191 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~p~~~~~---~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~ 191 (211)
+++++.+++..|+++|++++++|..... ....+.+.++|++++++|++ .++.|+|++..+....+.....+..
T Consensus 78 ~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~----~~~~~id~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01841 78 RDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPE----LGVTFIDLNDVLVDEFGNLKKEYTT 153 (174)
T ss_pred HHHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHH----CCCEEEEcHHHHcCCCCCccccccC
Confidence 9999999999999999999998876532 12346799999999999998 8899999999887666665556779
Q ss_pred CCCCCCHHHHHHHhhhhhc
Q psy1995 192 DYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 192 Dg~Hpn~~G~~~~a~~l~~ 210 (211)
||+|||++||++||+.|.+
T Consensus 154 DglH~n~~Gy~~~a~~l~~ 172 (174)
T cd01841 154 DGLHFNPKGYQKLLEILEE 172 (174)
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 9999999999999999864
No 3
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=100.00 E-value=3.8e-32 Score=203.79 Aligned_cols=163 Identities=26% Similarity=0.354 Sum_probs=141.7
Q ss_pred EEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHHHH
Q psy1995 38 LVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAENIADGIL 115 (211)
Q Consensus 38 il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~~~ 115 (211)
|+++|||+|+|++ |...+++..+.|.|++|.++.++.+++.+ .+ ..+||+|||++|+||.. .+++++.++++
T Consensus 2 v~~~GdSi~~~~~----~~~~~~~~~v~n~g~~G~~~~~~~~~l~~-~~-~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~ 75 (169)
T cd01828 2 LVFLGDSLTEGGP----WALLFPDVKVANRGISGDTTRGLLARLDE-DV-ALQPKAIFIMIGINDLAQGTSDEDIVANYR 75 (169)
T ss_pred EEEecchhhccCc----HHHhcCCCceEecCcccccHHHHHHHHHH-Hh-ccCCCEEEEEeeccCCCCCCCHHHHHHHHH
Confidence 8999999999964 56688899999999999999999999976 44 57999999999999997 67899999999
Q ss_pred HHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCC
Q psy1995 116 ELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLH 195 (211)
Q Consensus 116 ~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~H 195 (211)
++++.+++..|+++|++++++|...........+.++|+.++++|++ .++.|+|+++.+...++.....+..||+|
T Consensus 76 ~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~----~~~~~id~~~~~~~~~~~~~~~~~~DgiH 151 (169)
T cd01828 76 TILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQ----EGVTFLDLWAVFTNADGDLKNEFTTDGLH 151 (169)
T ss_pred HHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHH----CCCEEEechhhhcCCCCCcchhhccCccc
Confidence 99999999999999999999887632223346789999999999998 89999999998876655444556699999
Q ss_pred CCHHHHHHHhhhhhc
Q psy1995 196 LTESGYRKVFTPVYE 210 (211)
Q Consensus 196 pn~~G~~~~a~~l~~ 210 (211)
||++||++||+.|++
T Consensus 152 pn~~G~~~~a~~i~~ 166 (169)
T cd01828 152 LNAKGYAVWAAALQP 166 (169)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999999875
No 4
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=100.00 E-value=1.2e-31 Score=201.55 Aligned_cols=166 Identities=20% Similarity=0.339 Sum_probs=140.7
Q ss_pred cEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAENIADGI 114 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~~ 114 (211)
.|+|+|||+++.|.. +.+.+.+..++|+|++|.++.+++.++++... ..+||+|+|++|+||+. .+++++.+++
T Consensus 1 ~i~~~g~s~~~~w~~---~~~~~~~~~v~N~Gi~G~~~~~~~~~~~~~~~-~~~p~~vvi~~G~ND~~~~~~~~~~~~~~ 76 (171)
T cd04502 1 GILFYGSSSIRLWDT---LADDLAPLPVVNRGFGGSTLADCLHYFDRLVL-PYQPRRVVLYAGDNDLASGRTPEEVLRDF 76 (171)
T ss_pred CEEEEcCchhcchhh---HHHhCCCCceeecCcccchHHHHHHHHHhhhc-cCCCCEEEEEEecCcccCCCCHHHHHHHH
Confidence 389999999999854 45667889999999999999999999987444 57999999999999986 6799999999
Q ss_pred HHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccC-CCCCC
Q psy1995 115 LELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQG-DFYDY 193 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~Dg 193 (211)
+++++.+++..|+++|++++++|.... ......+.++|+.++++|++ ..++.|+|++..+...++...+. +..||
T Consensus 77 ~~lv~~i~~~~~~~~iil~~~~p~~~~-~~~~~~~~~~n~~~~~~a~~---~~~v~~vD~~~~~~~~~~~~~~~~~~~DG 152 (171)
T cd04502 77 RELVNRIRAKLPDTPIAIISIKPSPAR-WALRPKIRRFNALLKELAET---RPNLTYIDVASPMLDADGKPRAELFQEDG 152 (171)
T ss_pred HHHHHHHHHHCCCCcEEEEEecCCCcc-hhhHHHHHHHHHHHHHHHhc---CCCeEEEECcHHHhCCCCCcChhhcCCCC
Confidence 999999999999999999998775432 22345688999999999985 47999999999887665544434 45899
Q ss_pred CCCCHHHHHHHhhhhhc
Q psy1995 194 LHLTESGYRKVFTPVYE 210 (211)
Q Consensus 194 ~Hpn~~G~~~~a~~l~~ 210 (211)
+|||++||++|++.+++
T Consensus 153 lH~n~~Gy~~~a~~l~~ 169 (171)
T cd04502 153 LHLNDAGYALWRKVIKP 169 (171)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999999875
No 5
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.98 E-value=4.4e-31 Score=201.73 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=135.8
Q ss_pred CCcEEEEccchhcccCcc---hhHH--------hhcC-CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCC
Q psy1995 35 EPELVFIGDSLISFLTQT---QIWH--------NLFE-PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN 102 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~---~~~~--------~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND 102 (211)
+.+|+++|||+|+|++.. ..|. +.+. +..+.|.|++|.++.+++++++. .. ..+||+|+|++|+||
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~-~~-~~~pd~Vii~~G~ND 79 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP-LP-ETRFDVAVISIGVND 79 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh-cc-cCCCCEEEEEecccC
Confidence 568999999999998642 1232 2222 56899999999999999999986 33 689999999999999
Q ss_pred CC--CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc---ch----hhHHHHHHHHHHHHHhCCCCCCCCeEEEe
Q psy1995 103 TE--DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI---NK----LWTKNLATNQILADKLSPAPLGPKVHLIQ 173 (211)
Q Consensus 103 ~~--~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~---~~----~~~~~~~~n~~l~~~~~~~~~~~~v~~iD 173 (211)
+. .+++++.+++.++++.+++.+|+++|++++++|....+ .. ..+....+|+.++++|++ +.+++|+|
T Consensus 80 ~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~---~~~~~~id 156 (191)
T cd01836 80 VTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQPLRWLLGRRARLLNRALERLASE---APRVTLLP 156 (191)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEe
Confidence 87 67899999999999999999999999999988765432 11 234678999999999998 34999999
Q ss_pred CCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 174 HNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++..+. ...+..||+|||++||++|++.|.+
T Consensus 157 ~~~~~~------~~~~~~DglHpn~~Gy~~~a~~l~~ 187 (191)
T cd01836 157 ATGPLF------PALFASDGFHPSAAGYAVWAEALAP 187 (191)
T ss_pred cCCccc------hhhccCCCCCCChHHHHHHHHHHHH
Confidence 988764 2345689999999999999999875
No 6
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=99.97 E-value=2e-31 Score=204.25 Aligned_cols=169 Identities=15% Similarity=0.262 Sum_probs=138.7
Q ss_pred cEEEEccchhcccCcch--hHH----hhcC-CcceEEeccCCchhHHHHHHhhcCCCCCC--CCcEEEEEeccCCCC---
Q psy1995 37 ELVFIGDSLISFLTQTQ--IWH----NLFE-PLHCLAFGIGGDKVEHCLWRVQDGILDSI--KPKVIVILVGTNNTE--- 104 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~--~~~----~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~~--~pd~Vvi~~G~ND~~--- 104 (211)
+|+|+|||+|+|+.... .|. +.++ ...+.|.|++|.++..++++++....... +||+|||++|+||..
T Consensus 1 ~i~~~GDSit~g~~~~~~~~~~~~l~~~~~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 80 (199)
T cd01838 1 KIVLFGDSITQFSFDQGEFGFGAALADVYSRKLDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGANDAALPG 80 (199)
T ss_pred CEEEecCcccccccCCCCCcHHHHHHHHhcchhheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCccccCCC
Confidence 69999999999986433 454 3444 37899999999999999999987444322 899999999999997
Q ss_pred ----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc------------chhhHHHHHHHHHHHHHhCCCCCCCC
Q psy1995 105 ----DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI------------NKLWTKNLATNQILADKLSPAPLGPK 168 (211)
Q Consensus 105 ----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~------------~~~~~~~~~~n~~l~~~~~~~~~~~~ 168 (211)
.+.++|.++++++++.+++.+|+++|++++++|..... ......+..+|+.++++|++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~ 156 (199)
T cd01838 81 QPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEE----LG 156 (199)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHH----hC
Confidence 24789999999999999999999999999998866432 12235688999999999998 89
Q ss_pred eEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 169 VHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 169 v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++|+|++..+....+ ....++.||+|||++||++||+.|++
T Consensus 157 ~~~iD~~~~~~~~~~-~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 197 (199)
T cd01838 157 VPVIDLWTAMQEEAG-WLESLLTDGLHFSSKGYELLFEEIVK 197 (199)
T ss_pred CcEEEHHHHHHhccC-chhhhcCCCCCcCHhHHHHHHHHHHh
Confidence 999999988765443 23456799999999999999999875
No 7
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.97 E-value=1.5e-30 Score=197.49 Aligned_cols=167 Identities=24% Similarity=0.342 Sum_probs=139.0
Q ss_pred cEEEEccchhcccCcc--hhHHhhc---CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHH
Q psy1995 37 ELVFIGDSLISFLTQT--QIWHNLF---EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAEN 109 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~--~~~~~~~---~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~ 109 (211)
+|+++|||+|.|++.. ..|.+.+ .+..++|.|++|.++.+++++++.... ..+||+|+|++|+||.. .++++
T Consensus 2 ~i~~~GDSi~~g~~~~~~~~~~~~l~~~~~~~v~n~g~~G~~~~~~l~~l~~~~~-~~~~d~v~i~~G~ND~~~~~~~~~ 80 (183)
T cd04501 2 RVVCLGDSITYGYPVGPEASWVNLLAEFLGKEVINRGINGDTTSQMLVRFYEDVI-ALKPAVVIIMGGTNDIIVNTSLEM 80 (183)
T ss_pred eEEEEccccccCcCCCCcchHHHHHHhhcCCeEEecCcCCccHHHHHHHHHHHHH-hcCCCEEEEEeccCccccCCCHHH
Confidence 7999999999998653 3465433 467899999999999999999986433 57999999999999998 57899
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc-----hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCC-
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLIN-----KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKD- 183 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~-----~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~- 183 (211)
+.++++++++.+++. ++++|+++++|...... .....+..+|+.++++|++ .++.|+|++..+.+..+
T Consensus 81 ~~~~~~~li~~~~~~--~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~----~~v~~vd~~~~~~~~~~~ 154 (183)
T cd04501 81 IKDNIRSMVELAEAN--GIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARE----NGLLFLDFYSPLLDERNV 154 (183)
T ss_pred HHHHHHHHHHHHHHC--CCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHH----cCCCEEechhhhhccccc
Confidence 999999999999886 88899999888765432 2246789999999999998 89999999998876543
Q ss_pred CCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 184 EISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 184 ~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.....++.||+|||++||++|++.+.+
T Consensus 155 ~~~~~~~~DgvHp~~~Gy~~~a~~i~~ 181 (183)
T cd04501 155 GLKPGLLTDGLHPSREGYRVMAPLAEK 181 (183)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHH
Confidence 223455699999999999999999864
No 8
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.97 E-value=1.8e-29 Score=191.80 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=130.1
Q ss_pred cEEEEccchhcccCcc------hhHHhhc--------CCcceEEeccCCchhHHHHHH-hhcCCCCCCCCcEEEEEeccC
Q psy1995 37 ELVFIGDSLISFLTQT------QIWHNLF--------EPLHCLAFGIGGDKVEHCLWR-VQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~------~~~~~~~--------~~~~~~n~g~~G~~~~~~~~~-~~~~~~~~~~pd~Vvi~~G~N 101 (211)
||+|+|||+|+|+... ..|...+ .+..+.|.|++|.++.++..+ +.. .+ ..+||+|||++|+|
T Consensus 1 ~i~~~GDSit~G~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~-~~-~~~~d~vii~~G~N 78 (185)
T cd01832 1 RYVALGDSITEGVGDPVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPA-AL-ALRPDLVTLLAGGN 78 (185)
T ss_pred CeeEecchhhcccCCCCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHH-HH-hcCCCEEEEecccc
Confidence 5999999999998552 4455433 367899999999999976554 433 44 47999999999999
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC-CCccc--hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 102 NTE---DSAENIADGILELIRLVQTKQPQADVVVLELLPR-GKLIN--KLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 102 D~~---~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~-~~~~~--~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
|.. .+++++.+++..+++.++ .|+++|++++++|. ...+. .....+.++|+.++++|++ .++.|+|++
T Consensus 79 D~~~~~~~~~~~~~~~~~~i~~i~--~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~----~~v~~vd~~ 152 (185)
T cd01832 79 DILRPGTDPDTYRADLEEAVRRLR--AAGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAAR----YGAVHVDLW 152 (185)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHH--hCCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHH----cCCEEEecc
Confidence 995 688999999999999999 46999999998877 32221 2235689999999999998 899999999
Q ss_pred ccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 176 KDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 176 ~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
..+.... ...+..||+|||++||++||+.|++
T Consensus 153 ~~~~~~~---~~~~~~DgiHpn~~G~~~~A~~i~~ 184 (185)
T cd01832 153 EHPEFAD---PRLWASDRLHPSAAGHARLAALVLA 184 (185)
T ss_pred cCcccCC---ccccccCCCCCChhHHHHHHHHHhh
Confidence 8764211 2344589999999999999999875
No 9
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=3.4e-29 Score=190.73 Aligned_cols=164 Identities=14% Similarity=0.165 Sum_probs=128.7
Q ss_pred CcEEEEccchhcccCc--chhHH----hhc-CCcceEEeccCCchhHHH-------HHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 36 PELVFIGDSLISFLTQ--TQIWH----NLF-EPLHCLAFGIGGDKVEHC-------LWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~--~~~~~----~~~-~~~~~~n~g~~G~~~~~~-------~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
++|+|+|||+|+|++. ...|. +.+ .+..+.|.|++|.++... ..++.. .+ ..+||+|+|++|+|
T Consensus 1 ~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~-~~-~~~pd~Vii~~G~N 78 (188)
T cd01827 1 IKVACVGNSITEGAGLRAYDSYPSPLAQMLGDGYEVGNFGKSARTVLNKGDHPYMNEERYKN-AL-AFNPNIVIIKLGTN 78 (188)
T ss_pred CeEEEEecccccccCCCCCCchHHHHHHHhCCCCeEEeccCCcceeecCCCcCccchHHHHH-hh-ccCCCEEEEEcccC
Confidence 4799999999999864 23343 333 256899999999987432 233332 44 47999999999999
Q ss_pred CCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc---hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeC
Q psy1995 102 NTE----DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN---KLWTKNLATNQILADKLSPAPLGPKVHLIQH 174 (211)
Q Consensus 102 D~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~---~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~ 174 (211)
|.. ...++|.++++++++.+++.+|+++|++++++|...... ..+.....+|+.++++|++ .++.|+|+
T Consensus 79 D~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~vD~ 154 (188)
T cd01827 79 DAKPQNWKYKDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKK----LNLKLIDL 154 (188)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHH----cCCcEEEc
Confidence 987 236789999999999999999999999999888654321 1234567899999999998 99999999
Q ss_pred CccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 175 NKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 175 ~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+..+... ..++.||+|||++||++||+.|++
T Consensus 155 ~~~~~~~-----~~~~~Dg~Hpn~~G~~~~A~~i~~ 185 (188)
T cd01827 155 HTPLKGK-----PELVPDWVHPNEKGAYILAKVVYK 185 (188)
T ss_pred cccccCC-----ccccCCCCCcCHHHHHHHHHHHHH
Confidence 9887542 356789999999999999999875
No 10
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=2.2e-29 Score=191.79 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=137.8
Q ss_pred CcEEEEccchhcccCcchh----HHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCC----
Q psy1995 36 PELVFIGDSLISFLTQTQI----WHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTED---- 105 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~----~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~---- 105 (211)
.+|+++|||+|+|++.... +.+.++ +..++|.|++|.++.++..++..... ..+||+|+|++|+||...
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~-~~~~d~v~l~~G~ND~~~~~~~ 80 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVL-PAKPDVVSIMFGINDSFRGFDD 80 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhcccc-cCCCCEEEEEeecchHhhcccc
Confidence 4799999999998743222 233443 57899999999999999988776455 588999999999999983
Q ss_pred --CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc------hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 106 --SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN------KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 106 --~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~------~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
+++++.++++++++.+++..|+++|++++++|...... .....+..+|+.++++|++ .++.|+|++..
T Consensus 81 ~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~----~~~~~iD~~~~ 156 (191)
T cd01834 81 PVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAE----NGVAFVDLFTP 156 (191)
T ss_pred cccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHH----cCCeEEecHHH
Confidence 58899999999999999888999999999877654321 2346789999999999998 89999999998
Q ss_pred ccccCCCC-ccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 178 EIISKDEI-SQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 178 ~~~~~~~~-~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+.+..... ...++.||+|||++||++||+.+++
T Consensus 157 ~~~~~~~~~~~~~~~D~~Hpn~~G~~~~a~~~~~ 190 (191)
T cd01834 157 MKEAFQKAGEAVLTVDGVHPNEAGHRALARLWLE 190 (191)
T ss_pred HHHHHHhCCCccccCCCCCCCHHHHHHHHHHHHh
Confidence 86543222 3345699999999999999999875
No 11
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=4.6e-29 Score=184.82 Aligned_cols=152 Identities=22% Similarity=0.344 Sum_probs=128.9
Q ss_pred CcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~ 113 (211)
++++++|||+|+| .+.|.|++|.++.++..++..... ..+||+|+|++|+||.. .+++++.++
T Consensus 1 ~~~~~~Gds~~~g--------------~~~n~g~~G~~~~~~~~~~~~~~~-~~~pd~vvi~~G~ND~~~~~~~~~~~~~ 65 (157)
T cd01833 1 LRIMPLGDSITWG--------------DKDHEGHSGYLIDQIAAAAADWVL-AAKPDVVLLHLGTNDLVLNRDPDTAPDR 65 (157)
T ss_pred CceeecCCceeec--------------CCCCCCCCCccHHHHHHHhhhccc-cCCCCEEEEeccCcccccCCCHHHHHHH
Confidence 4799999999998 688999999999999999876344 68999999999999997 578999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCC-CCCCeEEEeCCccccccCCCCccCCCCC
Q psy1995 114 ILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAP-LGPKVHLIQHNKDEIISKDEISQGDFYD 192 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~D 192 (211)
++++++.+++.+|+++|++++++|...... ......+|+.++++|++.. ...++.|+|++..+.. ..+..|
T Consensus 66 ~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~--~~~~~~~n~~l~~~~~~~~~~~~~v~~vd~~~~~~~------~~~~~D 137 (157)
T cd01833 66 LRALIDQMRAANPDVKIIVATLIPTTDASG--NARIAEYNAAIPGVVADLRTAGSPVVLVDMSTGYTT------ADDLYD 137 (157)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCCcch--hHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCC------cccccC
Confidence 999999999999999999999887655432 4568899999999987621 1147999999988743 345699
Q ss_pred CCCCCHHHHHHHhhhhhc
Q psy1995 193 YLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 193 g~Hpn~~G~~~~a~~l~~ 210 (211)
|+|||++||++||+.+++
T Consensus 138 g~Hpn~~Gy~~~a~~~~~ 155 (157)
T cd01833 138 GLHPNDQGYKKMADAWYE 155 (157)
T ss_pred CCCCchHHHHHHHHHHHh
Confidence 999999999999999875
No 12
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=3.8e-29 Score=191.37 Aligned_cols=168 Identities=18% Similarity=0.152 Sum_probs=131.3
Q ss_pred CCcEEEEccchhcccCc--chhHHhh--------cCCcceEEeccCCchhHHHHHHhhcCCC---CCCCCcEEEEEeccC
Q psy1995 35 EPELVFIGDSLISFLTQ--TQIWHNL--------FEPLHCLAFGIGGDKVEHCLWRVQDGIL---DSIKPKVIVILVGTN 101 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~--~~~~~~~--------~~~~~~~n~g~~G~~~~~~~~~~~~~~~---~~~~pd~Vvi~~G~N 101 (211)
+.+|+++|||+|+|++. ...|... ..+..+.|.|++|.++.+++.|++.... ...+||+|+|++|+|
T Consensus 1 ~~~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~N 80 (193)
T cd01835 1 PKRLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLN 80 (193)
T ss_pred CcEEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCc
Confidence 36899999999999854 2334322 2357899999999999999999875332 126999999999999
Q ss_pred CCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccch-hhHHHHHHHHHHHHHhCCCCCCCCeEEE
Q psy1995 102 NTE--------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINK-LWTKNLATNQILADKLSPAPLGPKVHLI 172 (211)
Q Consensus 102 D~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~-~~~~~~~~n~~l~~~~~~~~~~~~v~~i 172 (211)
|.. .+.++|.++++++++.++. +++|++++++|..+...+ ....+.++|+.++++|++ .++.|+
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~ii~~~~~---~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~----~~~~~v 153 (193)
T cd01835 81 DTARGGRKRPQLSARAFLFGLNQLLEEAKR---LVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLR----RDVPFL 153 (193)
T ss_pred ccccccCcccccCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHH----cCCCeE
Confidence 986 2357889999999988764 678999999887653321 245789999999999998 899999
Q ss_pred eCCccccccCCCCccCCC-CCCCCCCHHHHHHHhhhhhc
Q psy1995 173 QHNKDEIISKDEISQGDF-YDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 173 D~~~~~~~~~~~~~~~~~-~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
|++..+.+.. .+...++ .||+|||++||++||+.|.+
T Consensus 154 d~~~~~~~~~-~~~~~~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 154 DTFTPLLNHP-QWRRELAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred eCccchhcCc-HHHHhhhccCCCCCCHHHHHHHHHHHhc
Confidence 9998876542 2233444 59999999999999999875
No 13
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=99.96 E-value=2.2e-29 Score=193.53 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=130.6
Q ss_pred CcEEEEccchhcccCcc---hhHHhhc----C-CcceEEeccCCchhHHHHH--HhhcCCCCC-CCCcEEEEEeccCCCC
Q psy1995 36 PELVFIGDSLISFLTQT---QIWHNLF----E-PLHCLAFGIGGDKVEHCLW--RVQDGILDS-IKPKVIVILVGTNNTE 104 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~---~~~~~~~----~-~~~~~n~g~~G~~~~~~~~--~~~~~~~~~-~~pd~Vvi~~G~ND~~ 104 (211)
++|+|+|||+|+|++.. ..|...+ . +..+.|+|++|.++..+.. +++. .+.. .+||+|||++|+||..
T Consensus 1 ~~i~~~GDS~t~G~~~~~~~~~w~~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~-~l~~~~~pdlVii~~G~ND~~ 79 (198)
T cd01821 1 PTIFLAGDSTVADYDPGAPQAGWGQALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDA-ILKLIKPGDYVLIQFGHNDQK 79 (198)
T ss_pred CEEEEEecCCcccCCCCCCCCChHHHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHH-HHhhCCCCCEEEEECCCCCCC
Confidence 47999999999999653 5675433 2 5789999999999988764 4443 3322 3799999999999987
Q ss_pred -C------CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc--hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 105 -D------SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN--KLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 105 -~------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~--~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
. +.++|.++++++++.+++. ++++++++++|...... .......++|+.++++|++ .++.|+|++
T Consensus 80 ~~~~~~~~~~~~~~~nl~~ii~~~~~~--~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~vD~~ 153 (198)
T cd01821 80 PKDPEYTEPYTTYKEYLRRYIAEARAK--GATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAE----EGVPLIDLN 153 (198)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHC--CCeEEEECCccccccCCCCcccccchhHHHHHHHHHHH----hCCCEEecH
Confidence 2 5789999999999999987 88999999887544322 1234688999999999998 899999999
Q ss_pred cccccc------CCCCc--cCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 176 KDEIIS------KDEIS--QGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 176 ~~~~~~------~~~~~--~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
..+... ++... ..+..||+|||++||++||+.|++
T Consensus 154 ~~~~~~~~~~g~~~~~~~~~~~~~DgvHp~~~G~~~~a~~i~~ 196 (198)
T cd01821 154 AASRALYEAIGPEKSKKYFPEGPGDNTHFSEKGADVVARLVAE 196 (198)
T ss_pred HHHHHHHHHhChHhHHhhCcCCCCCCCCCCHHHHHHHHHHHHh
Confidence 876321 11111 355699999999999999999875
No 14
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=4.1e-29 Score=190.21 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=129.6
Q ss_pred cEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcC----CCCCCCCcEEEEEeccCCCC---CCHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDG----ILDSIKPKVIVILVGTNNTE---DSAEN 109 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~ND~~---~~~~~ 109 (211)
||+|+|||+|+|........+.+ +..+.|+|++|.++..+. +++.. .+...+||+|+|++|+||.. .+.++
T Consensus 1 ~iv~~GDS~t~g~~~~~~l~~~l-~~~v~N~g~~G~t~~~~~-~~~~~~~~~~l~~~~pd~Vii~~G~ND~~~~~~~~~~ 78 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLL-GVIYDNLGVNGASASLLL-KWDAEFLQAQLAALPPDLVILSYGTNEAFNKQLNASE 78 (189)
T ss_pred CeeEecCccccccchhhHHHhhh-ceEEecCccCchhhhhhh-ccCHHHHHHHHhhCCCCEEEEECCCcccccCCCCHHH
Confidence 69999999999854333333333 778999999999987643 22111 23367899999999999987 46899
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc----hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCC-
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLIN----KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDE- 184 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~----~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~- 184 (211)
+.++++++++.+++++|+++|++++++|...... .....+..+|+.++++|++ .++.|+|++..+.+..+.
T Consensus 79 ~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~v~~vd~~~~~~~~~~~~ 154 (189)
T cd01825 79 YRQQLREFIKRLRQILPNASILLVGPPDSLQKTGAGRWRTPPGLDAVIAAQRRVAKE----EGIAFWDLYAAMGGEGGIW 154 (189)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCCCCcccCCcHHHHHHHHHHHHHH----cCCeEEeHHHHhCCcchhh
Confidence 9999999999999999999999999887643321 1234688999999999998 889999999887543211
Q ss_pred --Cc-cCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 185 --IS-QGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 185 --~~-~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.. ..+..||+|||++||++||+.+++
T Consensus 155 ~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~ 183 (189)
T cd01825 155 QWAEPGLARKDYVHLTPRGYERLANLLYE 183 (189)
T ss_pred HhhcccccCCCcccCCcchHHHHHHHHHH
Confidence 11 234589999999999999998874
No 15
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=2.3e-28 Score=184.75 Aligned_cols=163 Identities=13% Similarity=0.154 Sum_probs=121.7
Q ss_pred cEEEEccchhcccCcc---hhHHhhc---CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 37 ELVFIGDSLISFLTQT---QIWHNLF---EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~---~~~~~~~---~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
+|+|+|||||+|++.. ..|...+ .+..++|+|++|.+..... +.+ .+...+||+|||++|+||..... ++
T Consensus 1 ~iv~~GDSit~G~g~~~~~~~~~~~~~~~~~~~v~N~g~~G~~~~~~~--~~~-~~~~~~pd~vii~~G~ND~~~~~-~~ 76 (177)
T cd01844 1 PWVFYGTSISQGACASRPGMAWTAILARRLGLEVINLGFSGNARLEPE--VAE-LLRDVPADLYIIDCGPNIVGAEA-MV 76 (177)
T ss_pred CEEEEeCchhcCcCCCCCCCcHHHHHHHHhCCCeEEeeecccccchHH--HHH-HHHhcCCCEEEEEeccCCCccHH-HH
Confidence 6999999999998552 3565443 3678999999998764432 222 22357999999999999987333 89
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc---c---hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLPRGKLI---N---KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDE 184 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~---~---~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~ 184 (211)
.+++..+++.+++.+|+++|++++++|..... . ........+++.+++.+++ ..++++|+|.+..+..
T Consensus 77 ~~~~~~~i~~i~~~~p~~~iil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~id~~~~~~~---- 150 (177)
T cd01844 77 RERLGPLVKGLRETHPDTPILLVSPRYCPDAELTPGRGKLTLAVRRALREAFEKLRAD--GVPNLYYLDGEELLGP---- 150 (177)
T ss_pred HHHHHHHHHHHHHHCcCCCEEEEecCCCCccccCcchhHHHHHHHHHHHHHHHHHHhc--CCCCEEEecchhhcCC----
Confidence 99999999999999999999999988764321 1 1223455666666655432 1368999999876643
Q ss_pred CccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 185 ISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 185 ~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
...++.||+|||++||++|++.+++
T Consensus 151 -~~~~~~DglHpn~~Gy~~~a~~l~~ 175 (177)
T cd01844 151 -DGEALVDGIHPTDLGHMRYADRFEP 175 (177)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHhh
Confidence 2456789999999999999999876
No 16
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=99.96 E-value=2e-28 Score=184.62 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=126.7
Q ss_pred CcEEEEccchhcccCc--chhHH--------hhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-
Q psy1995 36 PELVFIGDSLISFLTQ--TQIWH--------NLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE- 104 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~--~~~~~--------~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~- 104 (211)
.+|+++|||+|+|++. ...|. +.+.+..++|.|++|.++.+++.+++. .+...+||+|+|++|+||..
T Consensus 1 ~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~-~~~~~~pd~v~i~~G~ND~~~ 79 (177)
T cd01822 1 VTILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPA-LLAQHKPDLVILELGGNDGLR 79 (177)
T ss_pred CeEEEEccccccCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHH-HHHhcCCCEEEEeccCccccc
Confidence 4799999999999853 22343 224578899999999999999999986 44457999999999999986
Q ss_pred -CCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCc-ccccc
Q psy1995 105 -DSAENIADGILELIRLVQTKQPQADVVVLELL-PRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNK-DEIIS 181 (211)
Q Consensus 105 -~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~-p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~-~~~~~ 181 (211)
.+++++.++++++++.++++ +++|++++++ |.... ......+|+.++++|++ .++.|+|.+. .+...
T Consensus 80 ~~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~~~~~~----~~~~~~~~~~~~~~a~~----~~~~~~d~~~~~~~~~ 149 (177)
T cd01822 80 GIPPDQTRANLRQMIETAQAR--GAPVLLVGMQAPPNYG----PRYTRRFAAIYPELAEE----YGVPLVPFFLEGVAGD 149 (177)
T ss_pred CCCHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCccc----hHHHHHHHHHHHHHHHH----cCCcEechHHhhhhhC
Confidence 77899999999999999998 8899998864 32211 23478899999999998 8999999752 22111
Q ss_pred CCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 182 KDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 182 ~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
...+..||+|||++||++||+.|++
T Consensus 150 ----~~~~~~DgvHpn~~G~~~~a~~i~~ 174 (177)
T cd01822 150 ----PELMQSDGIHPNAEGQPIIAENVWP 174 (177)
T ss_pred ----hhhhCCCCCCcCHHHHHHHHHHHHH
Confidence 2235699999999999999999875
No 17
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=1.5e-28 Score=190.21 Aligned_cols=162 Identities=16% Similarity=0.206 Sum_probs=126.5
Q ss_pred cEEEEccchhcccCc--------chhHHh----hc----CCcceEEeccCCchhH---------HHHHHhhcCCCCCCCC
Q psy1995 37 ELVFIGDSLISFLTQ--------TQIWHN----LF----EPLHCLAFGIGGDKVE---------HCLWRVQDGILDSIKP 91 (211)
Q Consensus 37 ~il~iGDS~t~g~~~--------~~~~~~----~~----~~~~~~n~g~~G~~~~---------~~~~~~~~~~~~~~~p 91 (211)
+|+|+|||+|+|+.. ...|.. .+ .+..++|.|++|.|+. +.+.++........+|
T Consensus 1 ~I~~~GDSiT~G~~~~~~~~~~~~~~w~~~L~~~l~~~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~~~~p 80 (208)
T cd01839 1 TILCFGDSNTWGIIPDTGGRYPFEDRWPGVLEKALGANGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALESHSPL 80 (208)
T ss_pred CEEEEecCcccCCCCCCCCcCCcCCCCHHHHHHHHccCCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHhCCCC
Confidence 589999999999843 123432 22 2378999999999985 3356665422223699
Q ss_pred cEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhC-----CCCeEEEEeccCCCCccc-------hhhHHHHHHHHH
Q psy1995 92 KVIVILVGTNNTE----DSAENIADGILELIRLVQTKQ-----PQADVVVLELLPRGKLIN-------KLWTKNLATNQI 155 (211)
Q Consensus 92 d~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~-----p~~~ii~~~~~p~~~~~~-------~~~~~~~~~n~~ 155 (211)
|+|||++|+||.. .+++++.+++.++++.+++.. |+++|++++++|...... ..++....+++.
T Consensus 81 d~vii~lGtND~~~~~~~~~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (208)
T cd01839 81 DLVIIMLGTNDLKSYFNLSAAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKGSLAGKFAGAEEKSKGLADA 160 (208)
T ss_pred CEEEEeccccccccccCCCHHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCccccchhhhhccHHHHHHHHHHH
Confidence 9999999999986 378999999999999999976 899999999988722111 123567899999
Q ss_pred HHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 156 LADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 156 l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++++|++ .++.|+|++..+. .+..||+|||++||++||+.|++
T Consensus 161 ~~~~a~~----~~~~~iD~~~~~~--------~~~~DGvH~~~~G~~~~a~~l~~ 203 (208)
T cd01839 161 YRALAEE----LGCHFFDAGSVGS--------TSPVDGVHLDADQHAALGQALAS 203 (208)
T ss_pred HHHHHHH----hCCCEEcHHHHhc--------cCCCCccCcCHHHHHHHHHHHHH
Confidence 9999998 8999999876542 24589999999999999999875
No 18
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=99.96 E-value=1.5e-28 Score=188.00 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=125.3
Q ss_pred cCCCcEEEEccchhcccCc--chhHHhhc-----CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-
Q psy1995 33 ESEPELVFIGDSLISFLTQ--TQIWHNLF-----EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE- 104 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~--~~~~~~~~-----~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~- 104 (211)
....+|+|+|||+|+|++. ...|...+ ....++|.|++|.|+.+++.|++.... ..+||+|||++|+||..
T Consensus 8 ~~~~~iv~~GDSit~G~~~~~~~~w~~~l~~~l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~-~~~pd~Vii~~GtND~~~ 86 (191)
T PRK10528 8 AAADTLLILGDSLSAGYRMPASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK-QHQPRWVLVELGGNDGLR 86 (191)
T ss_pred CCCCEEEEEeCchhhcCCCCccCchHHHHHHHHhhCCCEEecCcCcccHHHHHHHHHHHHH-hcCCCEEEEEeccCcCcc
Confidence 4467999999999999853 23464322 235699999999999999999987333 46999999999999986
Q ss_pred -CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec-cCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccC
Q psy1995 105 -DSAENIADGILELIRLVQTKQPQADVVVLEL-LPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISK 182 (211)
Q Consensus 105 -~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~-~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~ 182 (211)
.+++++.++++++++.+++. +.+++++++ .|... . ......+|+.++++|++ .+++|+|++.....
T Consensus 87 ~~~~~~~~~~l~~li~~~~~~--~~~~ill~~~~P~~~-~---~~~~~~~~~~~~~~a~~----~~v~~id~~~~~~~-- 154 (191)
T PRK10528 87 GFPPQQTEQTLRQIIQDVKAA--NAQPLLMQIRLPANY-G---RRYNEAFSAIYPKLAKE----FDIPLLPFFMEEVY-- 154 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHc--CCCEEEEEeecCCcc-c---HHHHHHHHHHHHHHHHH----hCCCccHHHHHhhc--
Confidence 78899999999999999987 555666653 33221 1 23456789999999998 79999998633221
Q ss_pred CCCccC-CCCCCCCCCHHHHHHHhhhhhc
Q psy1995 183 DEISQG-DFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 183 ~~~~~~-~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
..+. +..||+|||++||++||+.+++
T Consensus 155 --~~~~~~~~DGiHpn~~Gy~~~A~~i~~ 181 (191)
T PRK10528 155 --LKPQWMQDDGIHPNRDAQPFIADWMAK 181 (191)
T ss_pred --cCHhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 1333 4579999999999999998865
No 19
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=99.96 E-value=4.4e-28 Score=187.03 Aligned_cols=169 Identities=18% Similarity=0.235 Sum_probs=130.4
Q ss_pred cEEEEccchhcccCcch--h-H----Hhh-----cCCcceEEeccCCchhHHHHHHhhcCCC--CCCCCcEEEEEeccCC
Q psy1995 37 ELVFIGDSLISFLTQTQ--I-W----HNL-----FEPLHCLAFGIGGDKVEHCLWRVQDGIL--DSIKPKVIVILVGTNN 102 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~--~-~----~~~-----~~~~~~~n~g~~G~~~~~~~~~~~~~~~--~~~~pd~Vvi~~G~ND 102 (211)
+|+++|||+|+|++... . | ..+ ..+..+.|.|++|.|+.+++.+++...+ ...+||+|+|++|+||
T Consensus 1 ~i~~~GDSit~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~~~~~d~V~i~~G~ND 80 (204)
T cd04506 1 KIVALGDSLTEGVGDETGKGGYVGRLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGGND 80 (204)
T ss_pred CEeEEeccccCccCCCCCCCChHHHHHHHHhhhcCCceEEEeecccchhHHHHHHHHhcchhhhhcccCCEEEEEecchh
Confidence 58999999999985421 1 1 112 2357899999999999999999886433 1358999999999999
Q ss_pred CCC----------------CHHHHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCc-cc--hhhHHHHHHHHHHHHHhCC
Q psy1995 103 TED----------------SAENIADGILELIRLVQTKQPQADVVVLELL-PRGKL-IN--KLWTKNLATNQILADKLSP 162 (211)
Q Consensus 103 ~~~----------------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~-p~~~~-~~--~~~~~~~~~n~~l~~~~~~ 162 (211)
+.. +.++|.+++.++|+.++++.|+++|++++++ |.... +. .....+.++|+.++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~ 160 (204)
T cd04506 81 LMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVYFPNITEINDIVNDWNEASQKLASQ 160 (204)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 851 2457889999999999999999999999853 32221 11 2356789999999999987
Q ss_pred CCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 163 APLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 163 ~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+.++.|+|++..+.... ....+..||+|||++||++||+.+.+
T Consensus 161 ---~~~v~~vd~~~~~~~~~--~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 203 (204)
T cd04506 161 ---YKNAYFVPIFDLFSDGQ--NKYLLTSDHFHPNDKGYQLIADRVFK 203 (204)
T ss_pred ---CCCeEEEehHHhhcCCc--ccccccccCcCCCHHHHHHHHHHHHh
Confidence 44599999998876532 12344589999999999999999875
No 20
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=6.3e-28 Score=186.29 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=122.5
Q ss_pred cEEEEccchhcccCcc----hhHHhhc----------CCcceEEeccCCchhH------HHHHHhhcCCCCCCCCcEEEE
Q psy1995 37 ELVFIGDSLISFLTQT----QIWHNLF----------EPLHCLAFGIGGDKVE------HCLWRVQDGILDSIKPKVIVI 96 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~----~~~~~~~----------~~~~~~n~g~~G~~~~------~~~~~~~~~~~~~~~pd~Vvi 96 (211)
.|+|+|||+|+|++.. ..|...+ .+..++|+|++|.++. .+++|++..++...+||+|+|
T Consensus 1 ~iv~~GDSiT~G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~~~~p~~vii 80 (204)
T cd01830 1 SVVALGDSITDGRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLSQPGVRTVII 80 (204)
T ss_pred CEEEEecccccCCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhcCCCCCEEEE
Confidence 4899999999998532 3454322 3678999999999984 899999765665457999999
Q ss_pred EeccCCCC--C--------CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc--h-hhHHHHHHHHHHHHHhCCC
Q psy1995 97 LVGTNNTE--D--------SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN--K-LWTKNLATNQILADKLSPA 163 (211)
Q Consensus 97 ~~G~ND~~--~--------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~--~-~~~~~~~~n~~l~~~~~~~ 163 (211)
++|+||+. . +++++.++++++++.+++. +++|++++++|....+. . .......+|+.+++.+.
T Consensus 81 ~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~~~vil~t~~P~~~~~~~~~~~~~~~~~~n~~~~~~~~-- 156 (204)
T cd01830 81 LEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR--GIKVIGATITPFEGSGYYTPAREATRQAVNEWIRTSGA-- 156 (204)
T ss_pred ecccccccccccccccCCCCHHHHHHHHHHHHHHHHHC--CCeEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHccCC--
Confidence 99999986 2 7789999999999999987 78999999888654221 1 11223556666655322
Q ss_pred CCCCCeEEEeCCccccccCC--CCccCC-CCCCCCCCHHHHHHHhhhhh
Q psy1995 164 PLGPKVHLIQHNKDEIISKD--EISQGD-FYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 164 ~~~~~v~~iD~~~~~~~~~~--~~~~~~-~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
. ..++|++..+.+..+ ...+.+ ..||+|||++||++||+.+.
T Consensus 157 ---~-~~~vD~~~~~~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 157 ---F-DAVVDFDAALRDPADPSRLRPAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred ---C-CeeeEhHHhhcCCCCchhcccccCCCCCCCCCHHHHHHHHHhcC
Confidence 2 247999988866432 233444 47999999999999999875
No 21
>KOG3035|consensus
Probab=99.93 E-value=2.6e-26 Score=171.44 Aligned_cols=171 Identities=18% Similarity=0.300 Sum_probs=140.2
Q ss_pred CCCcEEEEccchhcccCcchhHH----hhc-CCcceEEeccCCchhHHHHHHhhcCCCC---CCCCcEEEEEeccCCCC-
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWH----NLF-EPLHCLAFGIGGDKVEHCLWRVQDGILD---SIKPKVIVILVGTNNTE- 104 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~----~~~-~~~~~~n~g~~G~~~~~~~~~~~~~~~~---~~~pd~Vvi~~G~ND~~- 104 (211)
..++|+++|||||+.....++|. +.| ....+..+|.+|.++.+.+.-+.+ +++ ..+|..|+|.+|+||..
T Consensus 5 ~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSRwALkvL~~-ifp~~~s~~p~lvtVffGaNDs~l 83 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSRWALKVLPE-IFPKGSSIQPVLVTVFFGANDSCL 83 (245)
T ss_pred ccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhHHHHHHhhh-hccccccCCceEEEEEecCccccC
Confidence 46789999999998764444554 333 356899999999999999887765 333 56899999999999986
Q ss_pred ---------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc-------------hhhHHHHHHHHHHHHHhCC
Q psy1995 105 ---------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN-------------KLWTKNLATNQILADKLSP 162 (211)
Q Consensus 105 ---------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~-------------~~~~~~~~~n~~l~~~~~~ 162 (211)
...++|..++++|+..++...|..+||+++++|+.+... ..++....+++++.++|.+
T Consensus 84 ~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e 163 (245)
T KOG3035|consen 84 PEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQE 163 (245)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999886411 1245677888888888887
Q ss_pred CCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 163 APLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 163 ~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
-++.++|+|+.+.. ...+...++.||+|+|++||+++.+.|++
T Consensus 164 ----~~l~~vdlws~~Q~-~~dw~~~~ltDGLHlS~~G~~ivf~Ei~k 206 (245)
T KOG3035|consen 164 ----IGLYVVDLWSKMQE-SDDWQTSCLTDGLHLSPKGNKIVFDEILK 206 (245)
T ss_pred ----hCCeeeeHHhhhhh-cccHHHHHhccceeeccccchhhHHHHHH
Confidence 89999999988754 44556677899999999999999998875
No 22
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.93 E-value=2.4e-25 Score=171.10 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=124.0
Q ss_pred cEEEEccchhcccCcchhHHhhc---CCcceEEeccCCchh-----HHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CC
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLF---EPLHCLAFGIGGDKV-----EHCLWRVQDGILDSIKPKVIVILVGTNNTE--DS 106 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~---~~~~~~n~g~~G~~~-----~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~ 106 (211)
+|+|+|||+|+|++.. ..+.+ .+..+.|.|++|.+. ..+..++..... ..+||+|+|++|+||.. ..
T Consensus 1 ril~iGDS~~~g~~~~--l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~-~~~pd~vii~~G~ND~~~~~~ 77 (200)
T cd01829 1 RVLVIGDSLAQGLAPG--LLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIA-EEKPDVVVVFLGANDRQDIRD 77 (200)
T ss_pred CEEEEechHHHHHHHH--HHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHh-cCCCCEEEEEecCCCCccccC
Confidence 6899999999997542 22222 357899999987652 134455654333 57999999999999986 11
Q ss_pred ------------HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeC
Q psy1995 107 ------------AENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQH 174 (211)
Q Consensus 107 ------------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~ 174 (211)
.+.+.++++++++.+++. +++|++++++|.... ..+.....+|..++++|++ .++.|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~--~~~vili~~pp~~~~--~~~~~~~~~~~~~~~~a~~----~~~~~id~ 149 (200)
T cd01829 78 GDGYLKFGSPEWEEEYRQRIDELLNVARAK--GVPVIWVGLPAMRSP--KLSADMVYLNSLYREEVAK----AGGEFVDV 149 (200)
T ss_pred CCceeecCChhHHHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCCCh--hHhHHHHHHHHHHHHHHHH----cCCEEEEh
Confidence 367888999999999864 899999998876542 2346788999999999998 78999999
Q ss_pred CccccccCCCCc-----------cCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 175 NKDEIISKDEIS-----------QGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 175 ~~~~~~~~~~~~-----------~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+..+...++... ..+..||+|||++||++|++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DgvH~~~~G~~~~a~~i~~ 196 (200)
T cd01829 150 WDGFVDENGRFTYSGTDVNGKKVRLRTNDGIHFTAAGGRKLAFYVEK 196 (200)
T ss_pred hHhhcCCCCCeeeeccCCCCcEEEeecCCCceECHHHHHHHHHHHHH
Confidence 998876554321 123479999999999999999875
No 23
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=99.93 E-value=2e-25 Score=164.34 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=112.5
Q ss_pred cEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILE 116 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~ 116 (211)
.|+++|||+|.|+. ..+.+.|++.. ++ |..|.++.+.+.++++..-....||.|||++|+||.. +.+++++
T Consensus 1 ~v~~~GDSv~~~~~--~~~~~~~p~~~-i~-a~~g~~~~~~~~~l~~~~~~~~~~d~vvi~lGtNd~~-----~~~nl~~ 71 (150)
T cd01840 1 DITAIGDSVMLDSS--PALQEIFPNIQ-ID-AKVGRQMSEAPDLIRQLKDSGKLRKTVVIGLGTNGPF-----TKDQLDE 71 (150)
T ss_pred CeeEEeehHHHchH--HHHHHHCCCCE-EE-eeecccHHHHHHHHHHHHHcCCCCCeEEEEecCCCCC-----CHHHHHH
Confidence 47899999999964 34677888653 44 5566677888888765222235799999999999983 5677888
Q ss_pred HHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCC-CCCCCC
Q psy1995 117 LIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGD-FYDYLH 195 (211)
Q Consensus 117 ~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~Dg~H 195 (211)
+++.+. |+++|+++++++. ..+..++|+.++++|++ +++++|+|++..+.. .+.+ ..||+|
T Consensus 72 ii~~~~---~~~~ivlv~~~~~-------~~~~~~~n~~~~~~a~~---~~~v~~id~~~~~~~-----~~~~~~~DgiH 133 (150)
T cd01840 72 LLDALG---PDRQVYLVNPHVP-------RPWEPDVNAYLLDAAKK---YKNVTIIDWYKAAKG-----HPDWFYGDGVH 133 (150)
T ss_pred HHHHcC---CCCEEEEEECCCC-------cchHHHHHHHHHHHHHH---CCCcEEecHHHHhcc-----cchhhcCCCCC
Confidence 888773 4789999887531 12368999999999998 569999999876643 3344 489999
Q ss_pred CCHHHHHHHhhhhhc
Q psy1995 196 LTESGYRKVFTPVYE 210 (211)
Q Consensus 196 pn~~G~~~~a~~l~~ 210 (211)
||++||++|++.|.+
T Consensus 134 pn~~G~~~~a~~i~~ 148 (150)
T cd01840 134 PNPAGAKLYAALIAK 148 (150)
T ss_pred CChhhHHHHHHHHHH
Confidence 999999999999875
No 24
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=99.92 E-value=2.8e-24 Score=161.18 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=104.3
Q ss_pred cEEEEccchhcccCcc---------------hhHHhhcC---CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEe
Q psy1995 37 ELVFIGDSLISFLTQT---------------QIWHNLFE---PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILV 98 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~---------------~~~~~~~~---~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~ 98 (211)
+|+|||||+|+|++.. ..|...+. +..+.+.+++|.+ ||+|||++
T Consensus 1 ~i~~iGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~g~~-----------------pd~vii~~ 63 (169)
T cd01831 1 KIEFIGDSITCGYGVTGKSRCDFSAATEDPSLSYAALLARALNAEYSIIAYSGIG-----------------PDLVVINL 63 (169)
T ss_pred CEEEEeccccccCccCCCCCCCCcccccchhhhHHHHHHHHhCCcEEEEEecCCC-----------------CCEEEEEC
Confidence 5899999999998542 23333221 2345566666655 99999999
Q ss_pred ccCCCC--C--CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeC
Q psy1995 99 GTNNTE--D--SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQH 174 (211)
Q Consensus 99 G~ND~~--~--~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~ 174 (211)
|+||.. . +.+++..++.++++.++++.|.++|+++++++..... ...+.+..+++.+++.+. .+++|+|+
T Consensus 64 G~ND~~~~~~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~v~~id~ 137 (169)
T cd01831 64 GTNDFSTGNNPPGEDFTNAYVEFIEELRKRYPDAPIVLMLGPMLFGPY-GTEEEIKRVAEAFKDQKS-----KKVHYFDT 137 (169)
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCcccccc-ccHHHHHHHHHHHHhcCC-----ceEEEEec
Confidence 999987 2 6889999999999999999999999988765433221 112334445444444332 47999998
Q ss_pred CccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 175 NKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 175 ~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
...+. ..++.||+|||++||++||+.|++
T Consensus 138 ~~~~~-------~~~~~DgiHPn~~G~~~iA~~l~~ 166 (169)
T cd01831 138 PGILQ-------HNDIGCDWHPTVAGHQKIAKHLLP 166 (169)
T ss_pred ccccC-------CCCcCCCCCCCHHHHHHHHHHHHH
Confidence 76542 345689999999999999999875
No 25
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.92 E-value=3.3e-25 Score=165.90 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=124.0
Q ss_pred EEEccchhcccCcc--hhHHh-----hcCCcceEEeccCCchhHHHHHHhhcCCC--CCCCCcEEEEEeccCCCCCC---
Q psy1995 39 VFIGDSLISFLTQT--QIWHN-----LFEPLHCLAFGIGGDKVEHCLWRVQDGIL--DSIKPKVIVILVGTNNTEDS--- 106 (211)
Q Consensus 39 l~iGDS~t~g~~~~--~~~~~-----~~~~~~~~n~g~~G~~~~~~~~~~~~~~~--~~~~pd~Vvi~~G~ND~~~~--- 106 (211)
||+|||+|+|++.. ..|.. ...+..+.|.|++|.++.++..++..... ...+||+|||++|+||....
T Consensus 1 v~~GDS~t~g~~~~~~~~~~~~l~~~~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~~~~~~~d~vvi~~G~ND~~~~~~~ 80 (179)
T PF13472_consen 1 VFLGDSITAGYGAPNNGSYPDRLAERPGRGIEVYNLGVSGATSSDFLARLQRDVLRFKDPKPDLVVISFGTNDVLNGDEN 80 (179)
T ss_dssp EEEESHHHHTTTTSSCTSHHHHHHHHHTCCEEEEEEE-TT-BHHHHHHHHHHHCHHHCGTTCSEEEEE--HHHHCTCTTC
T ss_pred CEEccccccCCCCCCCCCHHHHHHHhhCCCcEEEEEeecCccHhHHHHHHHHHHhhhccCCCCEEEEEcccccccccccc
Confidence 79999999997543 33432 23567899999999999999888876332 46899999999999999843
Q ss_pred ---HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc-----hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccc
Q psy1995 107 ---AENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN-----KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDE 178 (211)
Q Consensus 107 ---~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~-----~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~ 178 (211)
.+++..+++++++.++.. . +|++++++|...... ........+|+.++++|++ .++.|+|++..+
T Consensus 81 ~~~~~~~~~~l~~~i~~~~~~--~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~id~~~~~ 153 (179)
T PF13472_consen 81 DTSPEQYEQNLRRIIEQLRPH--G-PVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKK----YGVPFIDLFDAF 153 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--S-EEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHH----CTEEEEEHHHHH
T ss_pred cccHHHHHHHHHHHHHhhccc--C-cEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHH----cCCEEEECHHHH
Confidence 567889999999999775 3 999999988776543 2456799999999999998 799999999998
Q ss_pred cccCCCCccCCCCCCCCCCHHHHHHH
Q psy1995 179 IISKDEISQGDFYDYLHLTESGYRKV 204 (211)
Q Consensus 179 ~~~~~~~~~~~~~Dg~Hpn~~G~~~~ 204 (211)
.+........+..||+|||++||++|
T Consensus 154 ~~~~~~~~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 154 DDHDGWFPKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp BTTTSCBHTCTBTTSSSBBHHHHHHH
T ss_pred ccccccchhhcCCCCCCcCHHHhCcC
Confidence 76554445566799999999999986
No 26
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=99.92 E-value=6.4e-24 Score=169.56 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=129.0
Q ss_pred cEEEEccchhcccCcc--------------hhHHhh----cC--CcceEEeccCCchhHHHHHH------hhcCCCCCCC
Q psy1995 37 ELVFIGDSLISFLTQT--------------QIWHNL----FE--PLHCLAFGIGGDKVEHCLWR------VQDGILDSIK 90 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~--------------~~~~~~----~~--~~~~~n~g~~G~~~~~~~~~------~~~~~~~~~~ 90 (211)
++++||||+++|.+.. ..|..+ +. ...+.|.|++|.++.++..+ .+...+ ..+
T Consensus 2 ~~v~iGDS~~~G~g~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~n~a~sGa~~~~~~~~~~~~~~~~~~~l-~~~ 80 (259)
T cd01823 2 RYVALGDSYAAGPGAGPLDDGPDDGCRRSSNSYPTLLARALGDETLSFTDVACSGATTTDGIEPQQGGIAPQAGAL-DPD 80 (259)
T ss_pred CEEEecchhhcCCCCCcccCCCCCCCccCCccHHHHHHHHcCCCCceeeeeeecCcccccccccccCCCchhhccc-CCC
Confidence 6999999999998642 134433 22 26899999999999998754 222244 367
Q ss_pred CcEEEEEeccCCCCC-----------------------------CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCc
Q psy1995 91 PKVIVILVGTNNTED-----------------------------SAENIADGILELIRLVQTKQPQADVVVLELLPRGKL 141 (211)
Q Consensus 91 pd~Vvi~~G~ND~~~-----------------------------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~ 141 (211)
||+|+|++|+||+.. ..++|.+++.++++.+++..|+++|++++.++....
T Consensus 81 ~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~~~ 160 (259)
T cd01823 81 TDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLFPP 160 (259)
T ss_pred CCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccccC
Confidence 999999999999861 155789999999999999999999999997654321
Q ss_pred ---------------c----chhhHHHHHHHHHHHHHhCCCCCCCC---eEEEeCCccccccC-----------CCCccC
Q psy1995 142 ---------------I----NKLWTKNLATNQILADKLSPAPLGPK---VHLIQHNKDEIISK-----------DEISQG 188 (211)
Q Consensus 142 ---------------~----~~~~~~~~~~n~~l~~~~~~~~~~~~---v~~iD~~~~~~~~~-----------~~~~~~ 188 (211)
. ....+.+.++|+.++++|++ .+ +.|||++..+.... +.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~~----~~~~~v~fvD~~~~f~~~~~~~~~~~~~~~~~~~~~ 236 (259)
T cd01823 161 DGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAAD----AGDYKVRFVDTDAPFAGHRACSPDPWSRSVLDLLPT 236 (259)
T ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCceEEEEECCCCcCCCccccCCCccccccCCCCC
Confidence 0 11235688999999999998 78 99999998875421 111223
Q ss_pred CCCCCCCCCHHHHHHHhhhhhc
Q psy1995 189 DFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 189 ~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+..||+|||.+||++||+.|.+
T Consensus 237 ~~~d~~HPn~~G~~~~A~~i~~ 258 (259)
T cd01823 237 RQGKPFHPNAAGHRAIADLIVD 258 (259)
T ss_pred CCccCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999875
No 27
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.91 E-value=4e-23 Score=154.23 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=132.7
Q ss_pred EEEEccchhcccCcchhH---------Hhh--cCCcceEEeccCCchhHHHHHHhh--cCCCCCCCCcEEEEEeccCCCC
Q psy1995 38 LVFIGDSLISFLTQTQIW---------HNL--FEPLHCLAFGIGGDKVEHCLWRVQ--DGILDSIKPKVIVILVGTNNTE 104 (211)
Q Consensus 38 il~iGDS~t~g~~~~~~~---------~~~--~~~~~~~n~g~~G~~~~~~~~~~~--~~~~~~~~pd~Vvi~~G~ND~~ 104 (211)
|+++|||+|.|+...... ... .....+.|.|++|.++......+. . .....+||+||+.+|+||..
T Consensus 1 i~~~GDS~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~~~~~~~~~~~~~-~~~~~~~d~vil~~G~ND~~ 79 (187)
T cd00229 1 ILVIGDSITAGYGASSGSTFYSLLLYLLLLAGGPGVEVINLGVSGATTADALRRLGLRL-ALLKDKPDLVIIELGTNDLG 79 (187)
T ss_pred CeeeccccccccCCCCCCCCccchhhHHHhccCCCceEEeecccchhHHHHHhhcchhh-hhccCCCCEEEEEecccccc
Confidence 689999999997543111 111 235678999999999998888762 2 33478999999999999998
Q ss_pred ----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCC----eEEEeCCc
Q psy1995 105 ----DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPK----VHLIQHNK 176 (211)
Q Consensus 105 ----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~----v~~iD~~~ 176 (211)
.+.+.+...+.++++.+++..|+++|++++++|....+.........+|..+++.|++ .+ +.|+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~ 155 (187)
T cd00229 80 RGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAE----NPAPSGVDLVDLAA 155 (187)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHH----cCCCcceEEEEhhh
Confidence 3578899999999999999899999999999888765433345678899999999998 55 99999998
Q ss_pred cccccCCCCccCCCCCCCCCCHHHHHHHhhhhhcC
Q psy1995 177 DEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK 211 (211)
Q Consensus 177 ~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~ 211 (211)
.+... ....+..||+|||++||+++|+.|++.
T Consensus 156 ~~~~~---~~~~~~~Dg~H~~~~G~~~~a~~i~~~ 187 (187)
T cd00229 156 LLGDE---DKSLYSPDGIHPNPAGHKLIAEALASA 187 (187)
T ss_pred hhCCC---ccccccCCCCCCchhhHHHHHHHHhcC
Confidence 87543 123455999999999999999999863
No 28
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=99.87 E-value=3.1e-22 Score=148.64 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=84.2
Q ss_pred CcEEEEccchhcccCc---chhHHhhc---CCcceEEeccCCchh-HH-HHHHhhcCCCCCCCCcEEEEEeccCCCCCCH
Q psy1995 36 PELVFIGDSLISFLTQ---TQIWHNLF---EPLHCLAFGIGGDKV-EH-CLWRVQDGILDSIKPKVIVILVGTNNTEDSA 107 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~---~~~~~~~~---~~~~~~n~g~~G~~~-~~-~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 107 (211)
.+||++|+|||+|+.. +..|.... .+..++|.|++|..- +. +.+.+. ...+|++++.+|.| .++
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~~~~iNLGfsG~~~le~~~a~~ia-----~~~a~~~~ld~~~N---~~~ 73 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAILARRLGLDVINLGFSGNGKLEPEVADLIA-----EIDADLIVLDCGPN---MSP 73 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT-EEEEEE-TCCCS--HHHHHHHH-----HS--SEEEEEESHH---CCT
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHHHHHcCCCeEeeeecCccccCHHHHHHHh-----cCCCCEEEEEeecC---CCH
Confidence 5799999999999743 34565443 367899999999653 22 334343 34679999999999 789
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCc--cchhhHHHHHHHHHHHHHhCCC--CCCCCeEEEeCCccccccCC
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLELLPRGKL--INKLWTKNLATNQILADKLSPA--PLGPKVHLIQHNKDEIISKD 183 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~--~~~~~~~~~~~n~~l~~~~~~~--~~~~~v~~iD~~~~~~~~~~ 183 (211)
++|.+.+..+++.+|++.|+++|++++..+.... .........++|+.+++..++. .+.++++|++-...+.+
T Consensus 74 ~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~llg~--- 150 (178)
T PF14606_consen 74 EEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEELLGD--- 150 (178)
T ss_dssp TTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHHCS-----
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchhhcCc---
Confidence 9999999999999999999999999997664432 1112234455555554444332 13689999998776644
Q ss_pred CCccCCCCCCCCCCHHHHHHHhhhhhcC
Q psy1995 184 EISQGDFYDYLHLTESGYRKVFTPVYEK 211 (211)
Q Consensus 184 ~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~ 211 (211)
..+.+.||+|||+.|+.+||+.+.++
T Consensus 151 --d~e~tvDgvHP~DlG~~~~a~~l~~~ 176 (178)
T PF14606_consen 151 --DHEATVDGVHPNDLGMMRMADALEPV 176 (178)
T ss_dssp ----------------------------
T ss_pred --cccccccccccccccccccccccccc
Confidence 24567999999999999999998763
No 29
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=99.84 E-value=4.3e-20 Score=143.62 Aligned_cols=168 Identities=21% Similarity=0.247 Sum_probs=125.3
Q ss_pred cEEEEccchhcccCcc----hhHHhhc----C--Cc----ceEEeccCCchhHHHHHHhhcCCCCCCC-CcEEEEEeccC
Q psy1995 37 ELVFIGDSLISFLTQT----QIWHNLF----E--PL----HCLAFGIGGDKVEHCLWRVQDGILDSIK-PKVIVILVGTN 101 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~----~~~~~~~----~--~~----~~~n~g~~G~~~~~~~~~~~~~~~~~~~-pd~Vvi~~G~N 101 (211)
+++++|||+|.|++.. ..|...+ . +. .+.|.|++|.++...+.++.. .+.... ||+|+|++|+|
T Consensus 10 ~i~~~GDSlt~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~~~s~~~~~~g~~rl~~-~l~~~~~~d~v~i~lG~N 88 (216)
T COG2755 10 TVLALGDSLTAGYGPANRLEGGWVQVLAKRLVAKGVAVINLVLNGGISGDTSAGGLQRLPA-LLKQHLPPDLVIIMLGGN 88 (216)
T ss_pred eEEEeccchhccccCCCccccCchHHHHHHhhccCCeeeeeeecceeecCcchhHHHHhHH-HHhccCCCCEEEEEeecc
Confidence 7999999999998654 3454322 1 22 266888999999988888876 443344 89999999999
Q ss_pred CC--C--CCH--HHHHHHHHHHHHHHHhhCCC-----CeEEEEeccCCCC---ccchhhHHHHHHHHHHHHHhCCCCCCC
Q psy1995 102 NT--E--DSA--ENIADGILELIRLVQTKQPQ-----ADVVVLELLPRGK---LINKLWTKNLATNQILADKLSPAPLGP 167 (211)
Q Consensus 102 D~--~--~~~--~~~~~~~~~~i~~i~~~~p~-----~~ii~~~~~p~~~---~~~~~~~~~~~~n~~l~~~~~~~~~~~ 167 (211)
|. . ..+ +.+..++.++++.+++..+. +.++++...|... ......+....++..++++|.+ .
T Consensus 89 D~~~~~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~la~~----~ 164 (216)
T COG2755 89 DIGPLRGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIATDFPTYGADWFHAANEILAQLANE----L 164 (216)
T ss_pred ccchhcccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCccccchhHHHHHHHHHHHHHHHHhhhh----c
Confidence 98 3 455 88999999999999999776 7776665544322 2334456788899999999887 7
Q ss_pred CeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 168 KVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 168 ~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.+++.|++..+.. .......+..||+|||.+||+.|++.|.+
T Consensus 165 ~v~~~d~~~~~~~-~~~~~~~~~~Dg~H~n~~Gy~~~a~~l~~ 206 (216)
T COG2755 165 FVPLADLFDAGVD-GGRLPELLTEDGLHPNAKGYQALAEALAE 206 (216)
T ss_pred CccchHHHhcccc-cccCcccccCCCCCcCHhhHHHHHHHHHH
Confidence 8888888876654 22223333489999999999999998864
No 30
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.78 E-value=6e-20 Score=143.43 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=106.9
Q ss_pred EEEEccchhcc--cCcchhHHh----h----------cCCcceEEeccCCchhH--------------HHHHHhhcCCCC
Q psy1995 38 LVFIGDSLISF--LTQTQIWHN----L----------FEPLHCLAFGIGGDKVE--------------HCLWRVQDGILD 87 (211)
Q Consensus 38 il~iGDS~t~g--~~~~~~~~~----~----------~~~~~~~n~g~~G~~~~--------------~~~~~~~~~~~~ 87 (211)
|+++|||+|.| ......|.. . ..+..+.|.|++|.++. ....+... ...
T Consensus 1 i~~fGDS~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~a~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (234)
T PF00657_consen 1 IVVFGDSLTDGGGDSNGGGWPEGLANNLSSCLGANQRNSGVDVSNYAISGATSDGDLYNLWAQVQNISQQISRLLD-SKS 79 (234)
T ss_dssp EEEEESHHHHTTTSSTTCTHHHHHHHHCHHCCHHHHHCTTEEEEEEE-TT--CC-HGGCCCCTCHHHHHHHHHHHH-HHH
T ss_pred CEEEeehhcccCCCCCCcchhhhHHHHHhhccccccCCCCCCeeccccCCCccccccchhhHHHHHHHHHhhcccc-ccc
Confidence 78999999999 222233321 1 24677899999999942 11122211 122
Q ss_pred CCCCcEEEEEeccCCCC---------CCHHHHHHHHHHHHHHHHhhCCCC-----eEEEEeccCCCC-------------
Q psy1995 88 SIKPKVIVILVGTNNTE---------DSAENIADGILELIRLVQTKQPQA-----DVVVLELLPRGK------------- 140 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~---------~~~~~~~~~~~~~i~~i~~~~p~~-----~ii~~~~~p~~~------------- 140 (211)
..++++|+|++|+||+. ..++++.+.+.++++.++.. +.. .++++..+|...
T Consensus 80 ~~~~~lv~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T PF00657_consen 80 FYDPDLVVIWIGTNDYFNNRDSSDNNTSVEEFVENLRNAIKRLRSN-GARLIIVANIVVINLPPIGCLPAWSSNNKDSAS 158 (234)
T ss_dssp HHTTSEEEEE-SHHHHSSCCSCSTTHHHHHHHHHHHHHHHHHHHHT-TTEEEEEEEEEEEHHC-GGGSTTHHHTHTTTCT
T ss_pred cCCcceEEEecccCcchhhcccchhhhhHhhHhhhhhhhhhHHhcc-CCccccccccccccccccccccccccccccccc
Confidence 56899999999999962 45678999999999999954 333 233333333211
Q ss_pred ccchhhHHHHHHHHHHHHHh--------CCCCCCCCeEEEeCCccccccCCCCc----cCCCCCCCCCCHHHHHHHhhhh
Q psy1995 141 LINKLWTKNLATNQILADKL--------SPAPLGPKVHLIQHNKDEIISKDEIS----QGDFYDYLHLTESGYRKVFTPV 208 (211)
Q Consensus 141 ~~~~~~~~~~~~n~~l~~~~--------~~~~~~~~v~~iD~~~~~~~~~~~~~----~~~~~Dg~Hpn~~G~~~~a~~l 208 (211)
...........+|+.+++.+ .. .++.|+|++..+....+... ..++.||+|||++||+++|+.|
T Consensus 159 ~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~----~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 159 CIERLNAIVAAFNSALREVAAQLRKDYPKG----ANVPYFDIYSIFSDMYGIQNPENDKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHH----CTEEEEEHHHHHHHHHHHHHGGHHHCBBSSSSSB-HHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhhhcccccccC----CceEEEEHHHHHHHhhhccCcccceeccCCCcCCCHHHHHHHHcCC
Confidence 11123467899999999999 45 89999999987754311111 2356999999999999999975
No 31
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=99.77 E-value=8.3e-18 Score=135.85 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=100.9
Q ss_pred ceEEeccCCchhHHHH-------HHhhc-CCCC-CCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhC
Q psy1995 63 HCLAFGIGGDKVEHCL-------WRVQD-GILD-SIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQ 125 (211)
Q Consensus 63 ~~~n~g~~G~~~~~~~-------~~~~~-~~~~-~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~ 125 (211)
...|.|++|.++.++. +++++ ..++ ..++++|+|++|+||.. .+++++.++++++++.+++..
T Consensus 83 ~~~N~av~Ga~s~dL~~qa~~lv~r~~~~~~i~~~~dwklVtI~IG~ND~c~~~~~~~~~~~~~~~~nL~~~L~~Lr~~~ 162 (288)
T cd01824 83 SGFNVAEPGAKSEDLPQQARLLVRRMKKDPRVDFKNDWKLITIFIGGNDLCSLCEDANPGSPQTFVKNLRKALDILRDEV 162 (288)
T ss_pred cceeecccCcchhhHHHHHHHHHHHHhhccccccccCCcEEEEEecchhHhhhcccccCcCHHHHHHHHHHHHHHHHHhC
Confidence 4679999999999988 44432 2232 23577799999999996 247899999999999999999
Q ss_pred CCCeEEEEeccCCCC------------------cc----------chhhHHHHHHHHHHHHHhCCCC---CCCCeEEEeC
Q psy1995 126 PQADVVVLELLPRGK------------------LI----------NKLWTKNLATNQILADKLSPAP---LGPKVHLIQH 174 (211)
Q Consensus 126 p~~~ii~~~~~p~~~------------------~~----------~~~~~~~~~~n~~l~~~~~~~~---~~~~v~~iD~ 174 (211)
|.+.|++++++.... .+ ....+.+.++++.++++|+... ....+.+.++
T Consensus 163 P~~~V~lv~~~~~~~l~~~~~~p~~c~~~~~~~C~c~~~~~~~~~~~~~~~~~~y~~~~~eia~~~~~~~~~f~vv~qPf 242 (288)
T cd01824 163 PRAFVNLVGLLNVASLRSLTKKPLQCETLLAPECPCLLGPTENSYQDLKKFYKEYQNEVEEIVESGEFDREDFAVVVQPF 242 (288)
T ss_pred CCcEEEEEcCCCcHHHHHhccCCccccccCCCcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccccCccEEeeCc
Confidence 999999998744320 00 0223457888888888887621 1123333332
Q ss_pred Ccc---ccccCCCCccCCC-CCCCCCCHHHHHHHhhhhh
Q psy1995 175 NKD---EIISKDEISQGDF-YDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 175 ~~~---~~~~~~~~~~~~~-~Dg~Hpn~~G~~~~a~~l~ 209 (211)
... ....+| .+..++ .||+|||.+|+.++|+.+.
T Consensus 243 ~~~~~~~~~~~g-~d~~~~~~D~~Hps~~G~~~ia~~lw 280 (288)
T cd01824 243 FEDTSLPPLPDG-PDLSFFSPDCFHFSQRGHAIAANALW 280 (288)
T ss_pred hhccccccccCC-CcchhcCCCCCCCCHHHHHHHHHHHH
Confidence 221 122233 344444 8999999999999998765
No 32
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.71 E-value=1e-16 Score=126.82 Aligned_cols=167 Identities=17% Similarity=0.237 Sum_probs=121.7
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhc---CCcceEEecc--CCc---hhHHHHHHhhcCCCCCC-CCcEEEEEeccCCC
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLF---EPLHCLAFGI--GGD---KVEHCLWRVQDGILDSI-KPKVIVILVGTNNT 103 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~---~~~~~~n~g~--~G~---~~~~~~~~~~~~~~~~~-~pd~Vvi~~G~ND~ 103 (211)
....+|+|+|||++.|...+ ....| ++.++.++.. +|. .-.++-..+.+ .++.. +|.+||+++|.||.
T Consensus 114 ~~a~kvLvvGDslm~gla~g--l~~al~t~~~i~i~~~sn~SSGlvr~dYfdWpk~i~~-~l~~~~~~a~vVV~lGaND~ 190 (354)
T COG2845 114 RDADKVLVVGDSLMQGLAEG--LDKALATSPGITIVTRSNGSSGLVRDDYFDWPKAIPE-LLDKHPKPAAVVVMLGANDR 190 (354)
T ss_pred CCCCEEEEechHHhhhhHHH--HHHHhccCCCcEEEEeecCCCCcccccccccHHHHHH-HHHhcCCccEEEEEecCCCH
Confidence 45578999999999997542 44444 2445544433 332 22344444443 33333 99999999999997
Q ss_pred C-----------CC---HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCe
Q psy1995 104 E-----------DS---AENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKV 169 (211)
Q Consensus 104 ~-----------~~---~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v 169 (211)
. .+ .++|.+.+.++++.++.. ..+|+|++.+|.... .+++++..+|...++.++. .+=
T Consensus 191 q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~--~~~V~WvGmP~~r~~--~l~~dm~~ln~iy~~~vE~----~~g 262 (354)
T COG2845 191 QDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTH--KVPVLWVGMPPFRKK--KLNADMVYLNKIYSKAVEK----LGG 262 (354)
T ss_pred HhcccCCeeeecCchHHHHHHHHHHHHHHHHhccc--CCcEEEeeCCCcccc--ccchHHHHHHHHHHHHHHH----hCC
Confidence 6 12 357888888889888887 999999999776643 3567899999999998887 888
Q ss_pred EEEeCCccccccCCC-C-----------ccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 170 HLIQHNKDEIISKDE-I-----------SQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 170 ~~iD~~~~~~~~~~~-~-----------~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.+||+|+.+.++.|. + -.....||+|.|.+|.+.+|..+.+
T Consensus 263 k~i~i~d~~v~e~G~~f~~~~~D~NGq~vrlR~~DGIh~T~~Gkrkla~~~~k 315 (354)
T COG2845 263 KFIDIWDGFVDEGGKDFVTTGVDINGQPVRLRAKDGIHFTKEGKRKLAFYLEK 315 (354)
T ss_pred eEEEecccccccCCceeEEeccccCCceEEEeccCCceechhhHHHHHHHHHH
Confidence 999999998776654 1 1122389999999999999998875
No 33
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=99.68 E-value=1.9e-15 Score=120.59 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=107.1
Q ss_pred eEEeccCCchhHHHHHHhhcCCCC---CCCCcEEEEEeccCCCC---------CCHHHHHHHHHHHHHHHHhhCCC-CeE
Q psy1995 64 CLAFGIGGDKVEHCLWRVQDGILD---SIKPKVIVILVGTNNTE---------DSAENIADGILELIRLVQTKQPQ-ADV 130 (211)
Q Consensus 64 ~~n~g~~G~~~~~~~~~~~~~~~~---~~~pd~Vvi~~G~ND~~---------~~~~~~~~~~~~~i~~i~~~~p~-~~i 130 (211)
..|.|++|.++.++..++.. .++ ..+|++|+|.+|+||.. .+++++++++.++++.++++.|. .+|
T Consensus 94 ~qN~G~sGatSrdl~~~l~~-Ll~n~~~~~P~lVtI~lGgND~C~g~~d~~~~tp~eefr~NL~~~L~~Lr~~lP~~s~V 172 (305)
T cd01826 94 YQNLGVNGASSRNLLSIIKS-IARNRTTDKPALVIYSMIGNDVCNGPNDTINHTTPEEFYENVMEALKYLDTKLPNGSHV 172 (305)
T ss_pred HHHhccchhhhHHHHHHHHH-hccccccCCCeEEEEEeccchhhcCCCccccCcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 45889999999999888864 221 35689999999999985 46899999999999999999977 799
Q ss_pred EEEeccC--------------------------------------CCC------c-cchhhHHHHHHHHHHHHHhCCCC-
Q psy1995 131 VVLELLP--------------------------------------RGK------L-INKLWTKNLATNQILADKLSPAP- 164 (211)
Q Consensus 131 i~~~~~p--------------------------------------~~~------~-~~~~~~~~~~~n~~l~~~~~~~~- 164 (211)
++++++- +.. . ++...+...++++.+++++++..
T Consensus 173 iLvgmpd~~~L~~~~~~r~hplg~~~~~vty~~~y~~lncl~~spC~gw~~~n~t~rn~t~~~a~~l~~~~~~ia~~~~f 252 (305)
T cd01826 173 ILVGLVDGRILYDTLHNRLHPIGQLNKDVTYPNLYDYLNCLQVSPCWGWLNSNETLRNLTSERAAQLSNVLKRIAANETF 252 (305)
T ss_pred EEEeccchhhhhhhhccccccchhcccccchhhhhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHhhccc
Confidence 9987643 110 0 11123578899999999998710
Q ss_pred CCCCeEEEeCC-ccccc---cCCCCcc-CCC-CCCCCCCHHHHHHHhhhhhcC
Q psy1995 165 LGPKVHLIQHN-KDEII---SKDEISQ-GDF-YDYLHLTESGYRKVFTPVYEK 211 (211)
Q Consensus 165 ~~~~v~~iD~~-~~~~~---~~~~~~~-~~~-~Dg~Hpn~~G~~~~a~~l~~~ 211 (211)
..-+++|+|.. ..... ..|.... .+. .||+|||..|+.++|+.+.++
T Consensus 253 ~nF~v~~~~f~l~~v~~~~~~~g~~~~~~i~~~DgfHpsq~g~~l~a~~lW~~ 305 (305)
T cd01826 253 NNFDVHYIDFPIQQIVDMWIAFGGQTWQLIEPVDGFHPSQIANALLAEVFWKK 305 (305)
T ss_pred cceeEEEecchHHHHhhHHHhcCCCchhhcccccCCCccHHHHHHHHHHhhcC
Confidence 00188888873 22221 2333333 334 699999999999999998764
No 34
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.57 E-value=2.8e-14 Score=114.60 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=101.5
Q ss_pred cceEEeccCCchhHH------------HHHHhhc---CCC-CCCCCcEEEEEeccCCCCC----------CHHHHHHHHH
Q psy1995 62 LHCLAFGIGGDKVEH------------CLWRVQD---GIL-DSIKPKVIVILVGTNNTED----------SAENIADGIL 115 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~------------~~~~~~~---~~~-~~~~pd~Vvi~~G~ND~~~----------~~~~~~~~~~ 115 (211)
..+.|++++|+++.. +..+++. ... .....++++|++|+||... ..+++.+.+.
T Consensus 55 ~~~~N~A~~Ga~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~~~l~~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~ 134 (270)
T cd01846 55 KQGYNYAVGGATAGAYNVPPYPPTLPGLSDQVAAFLAAHKLRLPPDTLVAIWIGANDLLNALDLPQNPDTLVTRAVDNLF 134 (270)
T ss_pred CCcceeEecccccCCcccCCCCCCCCCHHHHHHHHHHhccCCCCCCcEEEEEeccchhhhhccccccccccHHHHHHHHH
Confidence 378999999998653 3333321 010 1135589999999999872 2456788888
Q ss_pred HHHHHHHhhCCCCeEEEEeccCCCCccc----------hhhHHHHHHHHHHHHHhCCCC---CCCCeEEEeCCccccc--
Q psy1995 116 ELIRLVQTKQPQADVVVLELLPRGKLIN----------KLWTKNLATNQILADKLSPAP---LGPKVHLIQHNKDEII-- 180 (211)
Q Consensus 116 ~~i~~i~~~~p~~~ii~~~~~p~~~~~~----------~~~~~~~~~n~~l~~~~~~~~---~~~~v~~iD~~~~~~~-- 180 (211)
++++.+... +..+|++++++|....|. ..+..+..+|+.|++.+++.. ....+.|+|++..+..
T Consensus 135 ~~i~~l~~~-g~~~i~v~~~p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~ 213 (270)
T cd01846 135 QALQRLYAA-GARNFLVLNLPDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDIL 213 (270)
T ss_pred HHHHHHHHC-CCCEEEEeCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHH
Confidence 899998854 455688888887766542 233468889998888776431 1357899999866432
Q ss_pred -c---CC----------------------CCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 181 -S---KD----------------------EISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 181 -~---~~----------------------~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
. .| .....++.|++|||+++|+++|+.+++
T Consensus 214 ~~p~~yGf~~~~~~C~~~~~~~~~~~~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 214 DNPAAYGFTNVTDPCLDYVYSYSPREACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred hCHHhcCCCcCcchhcCCCccccccCCCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 1 00 222334589999999999999999875
No 35
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.47 E-value=3.3e-13 Score=99.38 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=96.3
Q ss_pred CCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhC-CCCeEEEEeccCCCCcc-c------------hhh
Q psy1995 85 ILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQ-PQADVVVLELLPRGKLI-N------------KLW 146 (211)
Q Consensus 85 ~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~~~~~-~------------~~~ 146 (211)
.+.+.+.|+|+++-|.=|.. .+.++|.+++++++..+++.. |++.+|+.+.+|..+.. . ..+
T Consensus 45 ll~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~lr 124 (183)
T cd01842 45 LLEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSLR 124 (183)
T ss_pred eecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccch
Confidence 34467789999999999987 588999999999999999855 78999999999876421 1 124
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 147 TKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
..+.+.|...++++++ .++.+.|++..+... ......||+|.|+.||+.+++.+++
T Consensus 125 ~dv~eaN~~A~~va~~----~~~dVlDLh~~fr~~----~~~~~~DgVHwn~~a~r~ls~lll~ 180 (183)
T cd01842 125 YDVLEGNFYSATLAKC----YGFDVLDLHYHFRHA----MQHRVRDGVHWNYVAHRRLSNLLLA 180 (183)
T ss_pred hHHHHHHHHHHHHHHH----cCceeeehHHHHHhH----HhhcCCCCcCcCHHHHHHHHHHHHH
Confidence 5689999999999998 899999999888442 1122389999999999999998864
No 36
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.19 E-value=5.9e-10 Score=90.15 Aligned_cols=146 Identities=13% Similarity=0.049 Sum_probs=93.5
Q ss_pred ceEEeccCCchhHH-------------HHHHhh---cCCCCCCCCcEEEEEeccCCCC------CC-------H----HH
Q psy1995 63 HCLAFGIGGDKVEH-------------CLWRVQ---DGILDSIKPKVIVILVGTNNTE------DS-------A----EN 109 (211)
Q Consensus 63 ~~~n~g~~G~~~~~-------------~~~~~~---~~~~~~~~pd~Vvi~~G~ND~~------~~-------~----~~ 109 (211)
..+|++.+|+++.. +..+++ ...-....-++++|.+|+||.. .+ . ..
T Consensus 59 ~G~NfA~gGa~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~ 138 (281)
T cd01847 59 GGTNYAQGGARVGDTNNGNGAGAVLPSVTTQIANYLAAGGGFDPNALYTVWIGGNDLIAALAALTTATTTQAAAVAAAAT 138 (281)
T ss_pred CCceeeccCccccCCCCccccccCCCCHHHHHHHHHHhcCCCCCCeEEEEecChhHHHHHHhhccccccchhhHHHHHHH
Confidence 46788888877542 222332 1111112457889999999986 11 1 12
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc----------hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcccc
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLIN----------KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI 179 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~----------~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~ 179 (211)
....+...++.+.+. ...+|++++.+|....|. ..+.....+|+.|++..++.... ++.|+|.+..+.
T Consensus 139 ~~~~~~~~v~~L~~~-GAr~ilv~~lpplgc~P~~~~~~~~~~~~~n~~~~~~N~~L~~~l~~l~~~-~i~~~D~~~~~~ 216 (281)
T cd01847 139 AAADLASQVKNLLDA-GARYILVPNLPDVSYTPEAAGTPAAAAALASALSQTYNQTLQSGLNQLGAN-NIIYVDTATLLK 216 (281)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEeCCCCcccCcchhhccchhHHHHHHHHHHHHHHHHHHHHhccCC-eEEEEEHHHHHH
Confidence 345666667777665 345788888887776553 12346788999999988764322 699999987642
Q ss_pred c----c------------CC----------------CCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 180 I----S------------KD----------------EISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 180 ~----~------------~~----------------~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+ + -+ +....++.|++|||+++|+++++.+++
T Consensus 217 ~i~~nP~~yGf~~~~~~CC~~~~~~~~~~~~~~~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~ 279 (281)
T cd01847 217 EVVANPAAYGFTNTTTPACTSTSAAGSGAATLVTAAAQSTYLFADDVHPTPAGHKLIAQYALS 279 (281)
T ss_pred HHHhChHhcCccCCCccccCCCCccccccccccCCCCccceeeccCCCCCHHHHHHHHHHHHH
Confidence 1 0 01 122234589999999999999998875
No 37
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.15 E-value=3.2e-10 Score=95.35 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=105.6
Q ss_pred CCcEEEEccchhcccC----------------------cchhHHhhcC-----CcceEEeccCCchhHH-----------
Q psy1995 35 EPELVFIGDSLISFLT----------------------QTQIWHNLFE-----PLHCLAFGIGGDKVEH----------- 76 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~----------------------~~~~~~~~~~-----~~~~~n~g~~G~~~~~----------- 76 (211)
-.+|+++|||++.--+ .+..|.+... +...+|++++|+++..
T Consensus 142 ~~ai~vFGDSlsDtGnn~y~~t~~~~PPyG~~ftGRFSNG~v~~DfLA~~pyl~~~G~NFA~GGA~~~t~~~~~~~~~~~ 221 (408)
T PRK15381 142 ITRLVFFGDSLSDSLGRMFEKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIGDFV 221 (408)
T ss_pred CCeEEEeCCccccCCCccccccccCCCCCCCCCCcccCCCchhhheeccccccCCCCceEeecccccccccccccccCcc
Confidence 3579999999996511 0122333322 1245799999988641
Q ss_pred --HHHHhhcCCCCCCCCcEEEEEeccCCCC-C---CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccch------
Q psy1995 77 --CLWRVQDGILDSIKPKVIVILVGTNNTE-D---SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINK------ 144 (211)
Q Consensus 77 --~~~~~~~~~~~~~~pd~Vvi~~G~ND~~-~---~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~------ 144 (211)
+..+++. -. ...-++++|++|.||.. . ..+.+...+...|+.+... ...+|+|++.+|....|..
T Consensus 222 ~~L~~Qv~~-~~-~~~~aL~lV~iG~NDy~~~~~~~v~~vV~~~~~~l~~Ly~l-GARk~vV~nlpPlGC~P~~~~~~~~ 298 (408)
T PRK15381 222 SNTDRQVAS-YT-PSHQDLAIFLLGANDYMTLHKDNVIMVVEQQIDDIEKIISG-GVNNVLVMGIPDLSLTPYGKHSDEK 298 (408)
T ss_pred CCHHHHHHH-HH-hcCCcEEEEEeccchHHHhHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCCCCCCcchhhccCch
Confidence 2223322 11 12347888999999987 1 1334445555666666654 4558888888887776532
Q ss_pred --hhHHHHHHHHHHHHHhCCCC---CCCCeEEEeCCccccc----c-------------CCCC-------------ccCC
Q psy1995 145 --LWTKNLATNQILADKLSPAP---LGPKVHLIQHNKDEII----S-------------KDEI-------------SQGD 189 (211)
Q Consensus 145 --~~~~~~~~n~~l~~~~~~~~---~~~~v~~iD~~~~~~~----~-------------~~~~-------------~~~~ 189 (211)
.+.....+|+.|++.+++.. ...++.|+|.+..+.+ + .|.. ...+
T Consensus 299 ~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~cCg~G~~~~~~~C~p~~~~C~~Yv 378 (408)
T PRK15381 299 RKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDPQLDICPQYV 378 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCccccccCCCccCCccccCcccCCCCceE
Confidence 22345668888777665431 1246788999876421 0 0100 1224
Q ss_pred CCCCCCCCHHHHHHHhhhhhc
Q psy1995 190 FYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 190 ~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+.|.+|||+++|+++|+.+.+
T Consensus 379 FWD~vHPTe~ah~iiA~~~~~ 399 (408)
T PRK15381 379 FNDLVHPTQEVHHCFAIMLES 399 (408)
T ss_pred ecCCCCChHHHHHHHHHHHHH
Confidence 589999999999999988753
No 38
>KOG1388|consensus
Probab=99.01 E-value=8.1e-12 Score=93.87 Aligned_cols=191 Identities=25% Similarity=0.333 Sum_probs=148.6
Q ss_pred CCCCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995 2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV 81 (211)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~ 81 (211)
-||++-+.+-.+..+..+|++.+.++.... ++-....+.|..+|.+...-| |+++.+++..++++
T Consensus 5 ~~P~cgw~a~~~~~G~grcm~g~~~~p~d~--------------~~~~~~~~~W~fl~cP~~~cN-Gh~~c~t~~v~~~~ 69 (217)
T KOG1388|consen 5 RNPACGWCADGSNTGDGRCMEGHYRGPLDC--------------VQLEQPREIWRFLFCPLCQCN-GHSDCNTQHVCWRC 69 (217)
T ss_pred cCCCcccccCCCCCCCCeEEECccccccch--------------hhccCccchhhhhcChHHHhc-CCCCcccceeeeec
Confidence 489999999999999999999988653332 122233467999998888888 99999999999999
Q ss_pred hcCCCCCCCCcEEEEEec-cCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHh
Q psy1995 82 QDGILDSIKPKVIVILVG-TNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKL 160 (211)
Q Consensus 82 ~~~~~~~~~pd~Vvi~~G-~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~ 160 (211)
+...+....|..++...| +|....++++........+..+.+.+|.+++|+....|..+.+++++......|....-..
T Consensus 70 ~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~~~~~~~~~~c~c~~kgvvgd~c~~~e~~N~~r~~~~kgtcyy~l~i 149 (217)
T KOG1388|consen 70 ENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGASACVTLTGKCFCTTKGVVGDLCPKCEVPNRYRGKPLKGTCYYELLI 149 (217)
T ss_pred cCccccccCCceEEEEEecCCCCccCHhhhcCCeeeeeccCCccccccceEecccCcccccccccccCccccceeeeeec
Confidence 988887889999999999 8888899999999888899999999999999999999999888776654444443333222
Q ss_pred CCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 161 SPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 161 ~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.- ...+.+.+....|...++....--|.|-.|.+.+|+..+...+.+
T Consensus 150 d~---~ftf~l~~~d~~fv~sd~~i~~~d~fd~~~~~~~g~~~ic~~~~~ 196 (217)
T KOG1388|consen 150 DG---QFTFHLLQEDDGFVTSDNFISTHDMFDYLHLTNAGNTFICNPLWE 196 (217)
T ss_pred cc---ccccceeecCCCceeeccccccCCcccchhhccCCCceecchHHH
Confidence 22 356667766666655554444444678999999999988776654
No 39
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=98.73 E-value=4.4e-08 Score=79.86 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=104.0
Q ss_pred CcEEE--EccchhcccCcchhHHhhcC---CcceEEeccCC---chhHHHHHHhhcCCCCCCCCcEEEE-EeccCCCC--
Q psy1995 36 PELVF--IGDSLISFLTQTQIWHNLFE---PLHCLAFGIGG---DKVEHCLWRVQDGILDSIKPKVIVI-LVGTNNTE-- 104 (211)
Q Consensus 36 ~~il~--iGDS~t~g~~~~~~~~~~~~---~~~~~n~g~~G---~~~~~~~~~~~~~~~~~~~pd~Vvi-~~G~ND~~-- 104 (211)
.++++ +||++..|+..+-++.+.|. ...+..++-++ ....++...+....+...+|+.+++ ++|.||..
T Consensus 38 ~~~lV~vvGD~~a~~la~g~~l~~~~a~~p~v~v~~~~~~~lvr~d~~dw~~~i~~~~~~~~~~~~vvv~miG~nDrq~l 117 (327)
T PF04311_consen 38 RRILVRVVGDFLASGLADGFYLQEAFADNPDVAVADRVNGSLVRDDYYDWPEAIAASLIEAEKPAAVVVVMIGSNDRQQL 117 (327)
T ss_pred ceEEEeeccchhhhhhhhhhHHHHHhccCCCeEEEeecCCCcccccccccHHHhhhhhhhccCCceEEEEEeccCCCccc
Confidence 45666 79999999876644566663 34555555444 1112333344411334677777776 99999986
Q ss_pred --------CCHHHHHHHH-HHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHH-HHHHhCCCCCCCCeEEEeC
Q psy1995 105 --------DSAENIADGI-LELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQI-LADKLSPAPLGPKVHLIQH 174 (211)
Q Consensus 105 --------~~~~~~~~~~-~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~-l~~~~~~~~~~~~v~~iD~ 174 (211)
...+.+.+.| +++...+++. +.++++++.+-....+ ...+.+..+|.. .+..+.. .+..|+|.
T Consensus 118 ~~gds~~~~~s~~W~~~Y~~r~~~~i~~~--~vp~~wvglPd~~~~~-~~~~d~l~~n~~~yr~~a~~----~g~~fvDi 190 (327)
T PF04311_consen 118 RIGDSQMQFRSPEWLEEYGKRIAKVIREL--KVPSIWVGLPDYFRWP-KMSADMLALNDILYRDAAEK----AGGGFVDI 190 (327)
T ss_pred ccCCcccccCCHHHHHHHHHHHHHHHHhc--CCCeEEEeCCcccCCh-hhhHHHHHhcchhHHHHHHH----hcCccccc
Confidence 1122333322 2355666666 7889999886122222 233568889999 8887776 89999999
Q ss_pred CccccccCCCCcc-----------CCCCCCCCCCHHHHHHHhhhh
Q psy1995 175 NKDEIISKDEISQ-----------GDFYDYLHLTESGYRKVFTPV 208 (211)
Q Consensus 175 ~~~~~~~~~~~~~-----------~~~~Dg~Hpn~~G~~~~a~~l 208 (211)
|+ |.+++|.... .-..||+|.+.+ +++++-.+
T Consensus 191 wd-F~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A-~rkla~~v 233 (327)
T PF04311_consen 191 WD-FVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKA-KRKLAFYV 233 (327)
T ss_pred cc-cccCCCCcccCCCCccchHhhhhhhcceeeeec-ccceEEEe
Confidence 99 9887764311 123799999999 77766443
No 40
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=98.70 E-value=2.3e-07 Score=73.98 Aligned_cols=117 Identities=17% Similarity=0.065 Sum_probs=83.7
Q ss_pred CCcEEEEEeccCCCC-------------CCHHHHHHHHHHHHHHHHhhC----CCCeEEEEeccCCCCccc---------
Q psy1995 90 KPKVIVILVGTNNTE-------------DSAENIADGILELIRLVQTKQ----PQADVVVLELLPRGKLIN--------- 143 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~-------------~~~~~~~~~~~~~i~~i~~~~----p~~~ii~~~~~p~~~~~~--------- 143 (211)
.||+||+..|.-+.. ...+.+...++.+.+.+.+.. |..+||+.+..|....-.
T Consensus 100 ~pdvvV~nsG~W~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~ 179 (263)
T PF13839_consen 100 RPDVVVINSGLWYLRRSGFIEWGDNKEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCN 179 (263)
T ss_pred CCCEEEEEcchhhhhcchhcccCCCcCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcC
Confidence 899999999998873 356778889999998888655 668899988877654221
Q ss_pred ------hhhHHHHHHHHHHHHHh-CCCCCCCCeEEEeCCccccc-c--CCC------CccCCCCCCCC-CCHHHHHHHhh
Q psy1995 144 ------KLWTKNLATNQILADKL-SPAPLGPKVHLIQHNKDEII-S--KDE------ISQGDFYDYLH-LTESGYRKVFT 206 (211)
Q Consensus 144 ------~~~~~~~~~n~~l~~~~-~~~~~~~~v~~iD~~~~~~~-~--~~~------~~~~~~~Dg~H-pn~~G~~~~a~ 206 (211)
.....+..+|+.+.+.. .. .++.++|++..+.. . ++- .......||+| +.+.-++.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~ 255 (263)
T PF13839_consen 180 PPRREEITNEQIDELNEALREALKKN----SRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNE 255 (263)
T ss_pred cccccCCCHHHHHHHHHHHHHHhhcC----CCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHH
Confidence 12357899999999877 54 89999999543321 1 110 01111389999 99999988888
Q ss_pred hhhc
Q psy1995 207 PVYE 210 (211)
Q Consensus 207 ~l~~ 210 (211)
.|+.
T Consensus 256 lL~~ 259 (263)
T PF13839_consen 256 LLLN 259 (263)
T ss_pred HHHH
Confidence 7753
No 41
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=98.65 E-value=2.1e-07 Score=76.55 Aligned_cols=120 Identities=21% Similarity=0.189 Sum_probs=77.3
Q ss_pred CCcEEEEEeccCCCC-----C-----CHH----HHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc------------
Q psy1995 90 KPKVIVILVGTNNTE-----D-----SAE----NIADGILELIRLVQTKQPQADVVVLELLPRGKLIN------------ 143 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~-----~-----~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~------------ 143 (211)
.-++++|++|+||.. . +.+ .+...+.+.|+++... ...+|++++.+|....|.
T Consensus 128 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~L~~~-GAr~~~v~~lpplgc~P~~~~~~~~~~~~c 206 (315)
T cd01837 128 SKSLFLISIGSNDYLNNYFANPTRQYEVEAYVPFLVSNISSAIKRLYDL-GARKFVVPGLGPLGCLPSQRTLFGGDGGGC 206 (315)
T ss_pred hCCEEEEEecccccHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHhC-CCcEEEecCCCCcCccHHHHhhcCCCCCCc
Confidence 446899999999986 1 122 2344555556666554 344788888888766542
Q ss_pred --hhhHHHHHHHHHHHHHhCCCC---CCCCeEEEeCCccccc------------c------C-----------------C
Q psy1995 144 --KLWTKNLATNQILADKLSPAP---LGPKVHLIQHNKDEII------------S------K-----------------D 183 (211)
Q Consensus 144 --~~~~~~~~~n~~l~~~~~~~~---~~~~v~~iD~~~~~~~------------~------~-----------------~ 183 (211)
..+.....+|+.|++.+++.. ...++.|+|.+..+.+ . . .
T Consensus 207 ~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~yGf~~~~~aCc~~g~~~~~~~c~~~~~~~C~ 286 (315)
T cd01837 207 LEELNELARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKYGFENTLKACCGTGGPEGGLLCNPCGSTVCP 286 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhcCCcCCCcCccCCCCCCcccccCCCCCCcCC
Confidence 123467888888888775431 1246788998875421 0 0 0
Q ss_pred CCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 184 EISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 184 ~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+....++.|++|||+++|+++|+.++.
T Consensus 287 ~p~~y~fwD~~HpT~~~~~~ia~~~~~ 313 (315)
T cd01837 287 DPSKYVFWDGVHPTEAANRIIADALLS 313 (315)
T ss_pred CccceEEeCCCChHHHHHHHHHHHHhc
Confidence 112224589999999999999998764
No 42
>KOG3670|consensus
Probab=98.59 E-value=8.4e-07 Score=73.14 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=54.3
Q ss_pred EeccCCchhHHHH-------HHhhcC-CCC-CCCCcEEEEEeccCCCC----------CCHHHHHHHHHHHHHHHHhhCC
Q psy1995 66 AFGIGGDKVEHCL-------WRVQDG-ILD-SIKPKVIVILVGTNNTE----------DSAENIADGILELIRLVQTKQP 126 (211)
Q Consensus 66 n~g~~G~~~~~~~-------~~~~~~-~~~-~~~pd~Vvi~~G~ND~~----------~~~~~~~~~~~~~i~~i~~~~p 126 (211)
|.+.+|+.+.++. +|+++. .+. .....+|.|.+|+||+. ...+.+++++.+.++.++..-|
T Consensus 151 NvA~~Ga~s~Dlp~QAr~Lv~rik~~~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~nvP 230 (397)
T KOG3670|consen 151 NVAEPGAESEDLPDQARDLVSRIKKDKEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRDNVP 230 (397)
T ss_pred ccccccccchhhHHHHHHHHHHHHhccCcccccceEEEEEEeccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 6667777766543 455542 221 35677899999999987 2245688899999999999999
Q ss_pred CCeEEEEeccCC
Q psy1995 127 QADVVVLELLPR 138 (211)
Q Consensus 127 ~~~ii~~~~~p~ 138 (211)
.+-|.++++++.
T Consensus 231 R~iV~lvg~~~~ 242 (397)
T KOG3670|consen 231 RTIVSLVGMFNV 242 (397)
T ss_pred ceEEEEecCCCH
Confidence 999999888665
No 43
>PLN03156 GDSL esterase/lipase; Provisional
Probab=98.36 E-value=2.3e-06 Score=71.40 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=74.9
Q ss_pred cEEEEEeccCCCC------------CCHHHHH----HHHHHHHHHHHhhCCCCeEEEEeccCCCCccc------------
Q psy1995 92 KVIVILVGTNNTE------------DSAENIA----DGILELIRLVQTKQPQADVVVLELLPRGKLIN------------ 143 (211)
Q Consensus 92 d~Vvi~~G~ND~~------------~~~~~~~----~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~------------ 143 (211)
.+.+|++|+||.. .+++++. ..+.+.|+.+... ...+|++++.+|....|.
T Consensus 159 sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~-GAR~~~V~~lpplGc~P~~~~~~~~~~~~C 237 (351)
T PLN03156 159 ALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRL-GARKISLGGLPPMGCLPLERTTNLMGGSEC 237 (351)
T ss_pred CeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCCCccccCHHHHhhcCCCCCCc
Confidence 4788899999984 1233333 3344556666655 455888888888765542
Q ss_pred --hhhHHHHHHHHHHHHHhCCCC---CCCCeEEEeCCccccc----c--------------CC-----------------
Q psy1995 144 --KLWTKNLATNQILADKLSPAP---LGPKVHLIQHNKDEII----S--------------KD----------------- 183 (211)
Q Consensus 144 --~~~~~~~~~n~~l~~~~~~~~---~~~~v~~iD~~~~~~~----~--------------~~----------------- 183 (211)
..+.....+|+.|++..++.. ...++.|+|.+..+.+ + .|
T Consensus 238 ~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g~~~~~~~C~~~~~~~C~ 317 (351)
T PLN03156 238 VEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRNNPFTCS 317 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCCCCCCccccCCCCCCccC
Confidence 123456788888877665321 1246788899876421 0 00
Q ss_pred CCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 184 EISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 184 ~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+....++.|++|||+++|+++|+.++.
T Consensus 318 ~p~~yvfWD~~HPTe~a~~~iA~~~~~ 344 (351)
T PLN03156 318 DADKYVFWDSFHPTEKTNQIIANHVVK 344 (351)
T ss_pred CccceEEecCCCchHHHHHHHHHHHHH
Confidence 012223589999999999999998763
No 44
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=98.19 E-value=2.2e-05 Score=62.24 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=79.0
Q ss_pred CCCcEEEEEeccCCCC-----------------------------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 89 IKPKVIVILVGTNNTE-----------------------------DSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-----------------------------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
.+.|++||.+|+.-.+ .+.+++.+.+..+++.+++.+|+++|++. +.|+.
T Consensus 100 ~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilT-VSPVr 178 (251)
T PF08885_consen 100 EEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILT-VSPVR 178 (251)
T ss_pred HhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEE-eccch
Confidence 5789999999987322 35778899999999999999999998764 44443
Q ss_pred Ccc-----chh--hH-HHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhh
Q psy1995 140 KLI-----NKL--WT-KNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTP 207 (211)
Q Consensus 140 ~~~-----~~~--~~-~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~ 207 (211)
-.. ... +. --..+..++.+++.. ..++.|...++.+.++... ...|..|.+|||+.|-..+.+.
T Consensus 179 l~~T~~~~d~~~an~~SKs~Lr~a~~~l~~~---~~~v~YFPSYEiv~d~lrd-yrfy~~D~~Hps~~aV~~I~~~ 250 (251)
T PF08885_consen 179 LIATFRDRDGLVANQYSKSTLRAAAHELVRA---FDDVDYFPSYEIVMDELRD-YRFYAEDMRHPSPQAVDYIWER 250 (251)
T ss_pred hhcccccccchhhhhhhHHHHHHHHHHHHhc---CCCceEcchHhhccCcccc-cccccccCCCCCHHHHHHHHhh
Confidence 211 111 11 123344556666666 6899999999988754311 1234489999999998877654
No 45
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=98.12 E-value=7.6e-05 Score=61.52 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=114.2
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEecc---CCCC-----
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT---NNTE----- 104 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~---ND~~----- 104 (211)
+.+..++++|||.+-.+.. ....+.++++.+.|.+.+|.++.-....+++..-.+.+||.|++.... |+..
T Consensus 61 ~~kk~~~~fG~SRs~~F~~-~~i~~~~~dw~~yNFS~P~~~P~y~~y~le~i~~~g~kPd~v~le~sp~~Fn~~s~~~~~ 139 (345)
T PF07611_consen 61 KDKKLLVVFGSSRSLPFSN-EYIEKKYPDWEVYNFSVPGGTPAYYLYWLEKILEDGIKPDFVILEVSPEGFNKNSGFFKD 139 (345)
T ss_pred cCceEEEEEecCcccccCh-HHHHhhCCCCeEEEecCCCCchHHHHHHHHHHHhCCCCCCEEEEEcCHhHhcCCcchhhc
Confidence 4455699999999987744 334566889999999999999887666665422248899999998654 5421
Q ss_pred ----C--------------C------------------------------------------------------------
Q psy1995 105 ----D--------------S------------------------------------------------------------ 106 (211)
Q Consensus 105 ----~--------------~------------------------------------------------------------ 106 (211)
. +
T Consensus 140 ~~L~y~~d~~Fil~~~d~~s~~d~~~y~~~rlF~~~~~~p~~~~i~~r~k~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 219 (345)
T PF07611_consen 140 YNLRYSFDPRFILRHADRFSKDDVDYYFAKRLFATSRYPPRLKNISARIKNKKLEAYEKLRELTIRNLKKGEGNAFSPFS 219 (345)
T ss_pred chhhcCCCHHHHHHHHHhcCHHHHHHHHHHHhheeeccCCCHHHHHHHhcCcchhhHHHHHHHHHHHHHhccccccCCCC
Confidence 0 0
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhh--HHHHHHHHHHH
Q psy1995 107 ---------------------------AENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLW--TKNLATNQILA 157 (211)
Q Consensus 107 ---------------------------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~--~~~~~~n~~l~ 157 (211)
.+.-..-+++++..+++. +.+++++.|.-......... .-....+..++
T Consensus 220 ~~~~~d~ekL~~~s~~~~~~~l~~f~~s~~q~~F~e~~L~~ake~--~I~~vl~~P~V~~~~~~~~~~~~~~~~w~~~i~ 297 (345)
T PF07611_consen 220 PYVENDPEKLEKSSERIFKWYLSSFTFSETQFFFLEKFLKLAKEN--GIPVVLWWPKVSPPYEKLYKELKVYESWWPIIK 297 (345)
T ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHc--CCcEEEEEeccCHHHHHHHHhhchhhHHHHHHH
Confidence 011123457788888888 89988887632212111111 12466677888
Q ss_pred HHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 158 DKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 158 ~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+++++ .++.++|+... +......+.|+-|++..=|.-.++.|.+
T Consensus 298 ~l~~~----~~~~~~dmn~d-----~~~~C~~F~D~~HlS~~Cy~e~~~~l~~ 341 (345)
T PF07611_consen 298 KLAKE----YGIPFLDMNED-----PSYKCDDFSDASHLSPDCYPELMDILFK 341 (345)
T ss_pred HHHhc----CCceEecccCC-----CCcchhhccCccccCcccchHHHHHHHH
Confidence 88887 89999998752 2335566799999999888877777654
No 46
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=97.33 E-value=0.0016 Score=46.34 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccCCCCc----cchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCc
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLPRGKL----INKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEIS 186 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~----~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~ 186 (211)
..+++-+++.+++. ++.++++.+ |++.. .....+....+-+.++..|++ .|+.++|+...-- .
T Consensus 35 y~Dl~l~L~~~k~~--g~~~lfVi~-PvNg~wydytG~~~~~r~~~y~kI~~~~~~----~gf~v~D~s~~~y------~ 101 (130)
T PF04914_consen 35 YDDLQLLLDVCKEL--GIDVLFVIQ-PVNGKWYDYTGLSKEMRQEYYKKIKYQLKS----QGFNVADFSDDEY------E 101 (130)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE-----HHHHHHTT--HHHHHHHHHHHHHHHHT----TT--EEE-TTGTT------S
T ss_pred HHHHHHHHHHHHHc--CCceEEEec-CCcHHHHHHhCCCHHHHHHHHHHHHHHHHH----CCCEEEecccCCC------C
Confidence 35678899999998 998888755 55531 111235678888889999998 8999999865321 3
Q ss_pred cCCCCCCCCCCHHHHHHHhhhhh
Q psy1995 187 QGDFYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 187 ~~~~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
+.++.|-+||+.+|=-.+-+.|.
T Consensus 102 ~yfm~D~iHlgw~GWv~vd~~i~ 124 (130)
T PF04914_consen 102 PYFMQDTIHLGWKGWVYVDQAIY 124 (130)
T ss_dssp TTSBSSSSSB-THHHHHHHHHHH
T ss_pred CceeeecccCchhhHHHHHHHHH
Confidence 56679999999999888877764
No 47
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=97.04 E-value=0.0027 Score=52.49 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=70.2
Q ss_pred EEeccCCCC----CCH---HHH----HHHHHHHHHHHHhhCCCCeEEEEeccCC-CCcc-----c----hhhHHHHHHHH
Q psy1995 96 ILVGTNNTE----DSA---ENI----ADGILELIRLVQTKQPQADVVVLELLPR-GKLI-----N----KLWTKNLATNQ 154 (211)
Q Consensus 96 i~~G~ND~~----~~~---~~~----~~~~~~~i~~i~~~~p~~~ii~~~~~p~-~~~~-----~----~~~~~~~~~n~ 154 (211)
+..|.||.. ..+ +.+ ++++...++.+.+. +++.|++-..|- ...| . ........+|+
T Consensus 167 ~~ggand~~~~~~~~a~~~q~~~~~~~~~~~~~Vq~L~~A--GA~~i~v~~lpDl~l~P~~~~~~~~~~~a~~~t~~~Na 244 (370)
T COG3240 167 LWGGANDYLALPMLKAAAYQQLEGSTKADQSSAVQRLIAA--GARNILVMTLPDLSLTPAGKAYGTEAIQASQATIAFNA 244 (370)
T ss_pred HhhcchhhhcccccchhhhHHHhcchhhHHHHHHHHHHHh--hccEEEEeeccccccccccccccchHHHHHHHHHHHHH
Confidence 456888876 111 111 33577778888877 666555554442 2111 1 22356888999
Q ss_pred HHHHHhCCCCCCCCeEEEeCCccccc------------c--------------------CCCC-ccCCCCCCCCCCHHHH
Q psy1995 155 ILADKLSPAPLGPKVHLIQHNKDEII------------S--------------------KDEI-SQGDFYDYLHLTESGY 201 (211)
Q Consensus 155 ~l~~~~~~~~~~~~v~~iD~~~~~~~------------~--------------------~~~~-~~~~~~Dg~Hpn~~G~ 201 (211)
.|+.-.++. ..++..||.+..+.. . +... ...+|.|.+||+.+||
T Consensus 245 ~L~~~L~~~--g~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~~~~~~~~a~~p~~~~~~~~ylFaD~vHPTt~~H 322 (370)
T COG3240 245 SLTSQLEQL--GGNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDATVSNPACSASLPALCAAPQKYLFADSVHPTTAVH 322 (370)
T ss_pred HHHHHHHHh--cCcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcccCCcccccccccccCCccceeeecccCCchHHH
Confidence 998887762 145999999876531 0 0011 1245799999999999
Q ss_pred HHHhhhhhc
Q psy1995 202 RKVFTPVYE 210 (211)
Q Consensus 202 ~~~a~~l~~ 210 (211)
+++|++|+.
T Consensus 323 ~liAeyila 331 (370)
T COG3240 323 HLIAEYILA 331 (370)
T ss_pred HHHHHHHHH
Confidence 999999863
No 48
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=96.48 E-value=0.02 Score=45.61 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=72.3
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhC--CCCeEEEEeccCCCCccch---hhHHHHHHHHHHHHHhCCC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQ--PQADVVVLELLPRGKLINK---LWTKNLATNQILADKLSPA 163 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~~~~p~~~~~~~---~~~~~~~~n~~l~~~~~~~ 163 (211)
+....|+.+-|-+|. ....|.+.+.++|+.+|+.+ |+.++++..+.+....... ....-..++++.++.++.
T Consensus 142 ~~i~gvlW~QGEsD~--~~~~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~~~~~~~~~~~~~~~~vr~aQ~~~~~~- 218 (255)
T PF03629_consen 142 YGIKGVLWYQGESDA--NAEAYRELLKALIEDWRADWGDPDLPFVIGQLSPYNGTNNEPAGINEGWAEVREAQRRVAEE- 218 (255)
T ss_dssp HEEEEEEEE--GGGS--SCTCHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCCTTCGHHCCT-TTHHHHHHHHHHHHHH-
T ss_pred cceEEEEEeCCCCCC--CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcccCCCCcccccccHHHHHHHHHHHHhh-
Confidence 367789999999999 33499999999999999988 7889988888765543221 112356777888888866
Q ss_pred CCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 164 PLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 164 ~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.+++.+++... ..|..|+++.|++.+++++++
T Consensus 219 --~~~~~~v~t~d-------------~~~~~~i~~~~~~~~G~R~a~ 250 (255)
T PF03629_consen 219 --DPNTGMVSTSD-------------LGDPDDIHPAGKRELGERLAE 250 (255)
T ss_dssp --STTEEEEE-TT--------------B-TTSS-HHHHHHHHHHHHH
T ss_pred --CCCEEEEEccC-------------CCCCCCcCHHHHHHHHHHHHH
Confidence 58999886533 246667789999999888764
No 49
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=94.82 E-value=1.7 Score=40.51 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCCc---c------chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGKL---I------NKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISK 182 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~---~------~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~ 182 (211)
..+..+|+..+++ +.+||-+ ++|.+.. . .+.+.....+-..++++.+. |+++.++|-+..-.+.
T Consensus 808 ~~l~~~i~~~~~~--~~~~ig~-~~p~~p~y~~t~~fg~~g~~rs~a~~~~~~~~~~~~~---y~~f~~~denk~g~hd- 880 (912)
T TIGR02171 808 NSLKAFIDETAKK--GVKVIGT-IFPQSPGYKNTGSFGRYGPRRSIAKKIIDSFKKMEKT---YPHFILFDENKDGLHD- 880 (912)
T ss_pred HHHHHHHHHHHhC--CCEEEEE-ECCCCCCccccCcccccCcchhhHHHHHHHHHHHHhh---CCceEEEecCcCCccc-
Confidence 3455566666666 7766654 3454431 1 12345667777778888888 8999999976532221
Q ss_pred CCCccCCCCCCCCCCHHHHHHHhhhhh
Q psy1995 183 DEISQGDFYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 183 ~~~~~~~~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
....+-.|--|++..|.+.+..+|-
T Consensus 881 --y~~~ma~~~dhl~~~ga~~~t~rld 905 (912)
T TIGR02171 881 --YTDDMANNSDHLSDEGAKQFTYRLD 905 (912)
T ss_pred --ccccccccccccchhhHHHHHHHHH
Confidence 1223336888999999999987763
No 50
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=88.37 E-value=1.4 Score=32.84 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEe--ccCCch-hHHHHHHhhcCCCCCCCCcEEEEEecc
Q psy1995 24 HEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAF--GIGGDK-VEHCLWRVQDGILDSIKPKVIVILVGT 100 (211)
Q Consensus 24 ~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~--g~~G~~-~~~~~~~~~~~~~~~~~pd~Vvi~~G~ 100 (211)
...+++.......+|.++|.+-...-.......+.|++..++-. |.-+.. -..+.+.+ ...+||+|++.+|.
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I-----~~~~pdiv~vglG~ 109 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI-----NASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH-----HHcCCCEEEEECCC
Confidence 45555666667899999998854432222345667777665542 222211 12233333 25789999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 101 NNTEDSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 101 ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
= .+ +.++...++..+..-++-++
T Consensus 110 P------kQ-----E~~~~~~~~~l~~~v~~~vG 132 (171)
T cd06533 110 P------KQ-----ELWIARHKDRLPVPVAIGVG 132 (171)
T ss_pred C------HH-----HHHHHHHHHHCCCCEEEEec
Confidence 3 21 34556666665444344344
No 51
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=87.04 E-value=1.8 Score=32.36 Aligned_cols=89 Identities=13% Similarity=0.247 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccC---CchhHHHHHHhhcCCCCCCCCcEEEEEecc
Q psy1995 24 HEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIG---GDKVEHCLWRVQDGILDSIKPKVIVILVGT 100 (211)
Q Consensus 24 ~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~---G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ 100 (211)
...++........+|.++|++--..-.....+.+.|++..++-.-.+ ......+...+. ..+||+|++.+|.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~-----~~~pdiv~vglG~ 111 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN-----ASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH-----HcCCCEEEEECCC
Confidence 45555566667789999999853322222345667776665533222 122333444433 5799999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCCC
Q psy1995 101 NNTEDSAENIADGILELIRLVQTKQPQA 128 (211)
Q Consensus 101 ND~~~~~~~~~~~~~~~i~~i~~~~p~~ 128 (211)
=- + +..+...+...+..
T Consensus 112 Pk------Q-----E~~~~~~~~~l~~~ 128 (172)
T PF03808_consen 112 PK------Q-----ERWIARHRQRLPAG 128 (172)
T ss_pred CH------H-----HHHHHHHHHHCCCC
Confidence 42 1 44566667766555
No 52
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=84.01 E-value=3.3 Score=31.13 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEecc
Q psy1995 24 HEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT 100 (211)
Q Consensus 24 ~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ 100 (211)
...+++.......++.++|.+=..--.....+.+.|++..+.-. .|.-...-.+.+-+ .+...+||+|+|.+|+
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~-~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALA-KIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHH-HHHHcCCCEEEEEcCC
Confidence 34555555566689999997743221122345566776665533 33222211112211 2225789999998875
No 53
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.25 E-value=13 Score=25.51 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=42.0
Q ss_pred CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCC-CCeEEEEecc
Q psy1995 60 EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQP-QADVVVLELL 136 (211)
Q Consensus 60 ~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p-~~~ii~~~~~ 136 (211)
.++.+++.|.. ....++...+. ..+||+|.|+.-.. .......++++.+++..| +..|++-+..
T Consensus 26 ~G~~V~~lg~~-~~~~~l~~~~~-----~~~pdvV~iS~~~~-------~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 26 AGFEVIDLGVD-VPPEEIVEAAK-----EEDADAIGLSGLLT-------THMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred CCCEEEECCCC-CCHHHHHHHHH-----HcCCCEEEEecccc-------ccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 46778777733 44556666554 47999998865311 223556788999999888 6776665553
No 54
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=76.84 E-value=7.6 Score=25.73 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=36.0
Q ss_pred hHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 74 VEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 74 ~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...++..+. ...||++++.+...+.. ..++++.+++..|..++++++.
T Consensus 32 ~~~~~~~~~-----~~~~d~iiid~~~~~~~---------~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 32 GEEALELLK-----KHPPDLIIIDLELPDGD---------GLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp HHHHHHHHH-----HSTESEEEEESSSSSSB---------HHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHhc-----ccCceEEEEEeeecccc---------ccccccccccccccccEEEecC
Confidence 445555554 35699999998777743 4568888888889999999985
No 55
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=75.81 E-value=19 Score=28.67 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=46.1
Q ss_pred ceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHH-hhCCCCeEEEEec
Q psy1995 63 HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQ-TKQPQADVVVLEL 135 (211)
Q Consensus 63 ~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~-~~~p~~~ii~~~~ 135 (211)
.+..-|+||.++..-+.+.- |+.=++.+|-|-.. .+.+++.+.+.++++.+. +. +++.+++.+
T Consensus 2 gvfDSGiGGltv~~~l~~~~--------p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~--g~d~ivIaC 69 (251)
T TIGR00067 2 GVFDSGVGGLSVLKEIRKQL--------PKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERH--NIKLLVVAC 69 (251)
T ss_pred EEEeCCccHHHHHHHHHHHC--------CCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 35678999988766555432 22334677877665 678899999999999998 76 888887765
No 56
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=74.99 E-value=23 Score=30.92 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=38.6
Q ss_pred CCCCCcEEEEE----eccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC
Q psy1995 87 DSIKPKVIVIL----VGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGK 140 (211)
Q Consensus 87 ~~~~pd~Vvi~----~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~ 140 (211)
+..+|.+|++. +=-|| .++.+.+.++++++.||.+ ++-|++++-.|..-
T Consensus 251 D~dkPklVfFfDEAHLLF~d---a~kall~~ieqvvrLIRSK--GVGv~fvTQ~P~Di 303 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFND---APKALLDKIEQVVRLIRSK--GVGVYFVTQNPTDI 303 (502)
T ss_pred CCCCceEEEEEechhhhhcC---CCHHHHHHHHHHHHHhhcc--CceEEEEeCCCCCC
Confidence 35789998873 33343 4688899999999999998 99999999877654
No 57
>KOG0393|consensus
Probab=72.15 E-value=13 Score=28.56 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 87 DSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 87 ~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.-.+.|++++.+..++ ++.+...-.+-+-.++..+|+++|||++.
T Consensus 73 sY~~tdvfl~cfsv~~----p~S~~nv~~kW~pEi~~~cp~vpiiLVGt 117 (198)
T KOG0393|consen 73 SYPQTDVFLLCFSVVS----PESFENVKSKWIPEIKHHCPNVPIILVGT 117 (198)
T ss_pred CCCCCCEEEEEEEcCC----hhhHHHHHhhhhHHHHhhCCCCCEEEEee
Confidence 3456788887766554 55665555666788999999999999994
No 58
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.76 E-value=29 Score=30.64 Aligned_cols=93 Identities=10% Similarity=0.039 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCC
Q psy1995 106 SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEI 185 (211)
Q Consensus 106 ~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~ 185 (211)
+..++.+++.+++..+- .-+|++++-.-........-....++-+.+.+.+.+ .+++++|....+.+-..
T Consensus 171 teaEIEeDmmeIVqLLG----k~rVvfVTHVNA~tadGt~Ia~RarLIArV~aiAaR----~dVp~vDPt~Lm~dwGQ-- 240 (831)
T PRK15180 171 DEHAIEQDMMEIVQLLG----RDRVMFMTHVDAVTRAGTVILSRSRLIKNVDTIAAR----MDIPCVNPTNLMEKWGQ-- 240 (831)
T ss_pred cHHHHHHHHHHHHHHhC----CCcEEEEEeecccCCCCCCHHHHHHHHHHHHHHHhc----CCCcccCchhhhcccch--
Confidence 44556666666666553 335666664322221111223456666778888887 89999999877643211
Q ss_pred ccCCCC---CCCCCCH-HHHHHHhhhh
Q psy1995 186 SQGDFY---DYLHLTE-SGYRKVFTPV 208 (211)
Q Consensus 186 ~~~~~~---Dg~Hpn~-~G~~~~a~~l 208 (211)
...+-. |--|-|+ .|.+++++.+
T Consensus 241 aRaLe~~GlDltHYTP~Fa~~iv~~~f 267 (831)
T PRK15180 241 KRALEKNGDDLTHYTDMFGDAIVAAIF 267 (831)
T ss_pred hhcccCCCCCcccCChHHHHHHHHHHH
Confidence 112223 4459999 6666655543
No 59
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=71.45 E-value=32 Score=26.11 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=29.1
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
..+||+|++.+..-|... .. -.++++.+++..|.++|++++..+
T Consensus 47 ~~~~DlvllD~~l~~~~~-~~-----g~~~~~~l~~~~~~~~iIvls~~~ 90 (216)
T PRK10840 47 KLDAHVLITDLSMPGDKY-GD-----GITLIKYIKRHFPSLSIIVLTMNN 90 (216)
T ss_pred hCCCCEEEEeCcCCCCCC-CC-----HHHHHHHHHHHCCCCcEEEEEecC
Confidence 357999999765544200 00 134677777788999999998643
No 60
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=68.12 E-value=18 Score=26.89 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEec------cCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLEL------LPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~------~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
.+.+.+.+.++++.+++. ..++|+++. .|.......+++..-.+|+.+.+.|.+
T Consensus 96 ~~~~~~~i~~~l~~l~~~--~~~lViVsnEVG~GiVP~~~~~R~yrd~lG~lnq~lA~~Ad~ 155 (167)
T PF02283_consen 96 EEDILEEIERLLEALRER--NADLVIVSNEVGWGIVPMDPLTRRYRDLLGRLNQRLAARADE 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHH----SEEEEEEE---SS---SSHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHcc--CCCEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCE
Confidence 467888899999999887 677777764 344433345667889999999998865
No 61
>PRK00865 glutamate racemase; Provisional
Probab=67.84 E-value=35 Score=27.27 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=48.1
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.+..-|+||.++..-+.+.- |..=+|.+|.|-.. .+.+++.+.+.++++.+.+. +++.+++.+
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~l--------p~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~--g~d~iVIaC 75 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLL--------PDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEY--GVKMLVIAC 75 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHC--------CCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 3567889999988766555432 33335667777654 67889999999999999986 888888765
No 62
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=67.68 E-value=28 Score=28.50 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=53.5
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEecc-CCCCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT-NNTEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~-ND~~~~~~~ 109 (211)
....++++.||-=+.+- ..+.+.+.. ..+...|.-|..++.-..-++ ..+|.+.||+.|- |..++.-++
T Consensus 180 ~g~~s~LlTGD~e~~~E---~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~-----~v~Pk~AliS~G~~N~yghPh~~ 251 (293)
T COG2333 180 FGGNSFLLTGDLEEKGE---KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLE-----AVKPKVALISSGRNNRYGHPHQE 251 (293)
T ss_pred eCCeeEEEecCCCchhH---HHHHhhCCCccceEEEeccCCccccCcHHHHH-----hcCCcEEEEEeeccCCCCCCcHH
Confidence 45678899999877653 223333433 457888888877776666554 4689999999999 555555555
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEE
Q psy1995 110 IADGILELIRLVQTKQPQADVVV 132 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~ 132 (211)
. ++++++. +++++-
T Consensus 252 V-------l~rl~~~--~~~v~r 265 (293)
T COG2333 252 V-------LERLQKR--GIKVYR 265 (293)
T ss_pred H-------HHHHHhc--CCeEEe
Confidence 4 4444444 455443
No 63
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=65.59 E-value=26 Score=26.02 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEec------cCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLEL------LPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~------~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
+.+.+.+.++++.+++. ++.+|+++. .|.+.....+++..-.+|+.+.+.|.+
T Consensus 99 ~~~~~~i~~l~~~l~~~--~~~~viVsnEvG~g~vp~~~~~r~f~d~lG~lnq~la~~ad~ 157 (169)
T cd00544 99 AAIADEIDALLAAVRNK--PGTLILVSNEVGLGVVPENALGRRFRDELGRLNQRLAALADE 157 (169)
T ss_pred hHHHHHHHHHHHHHHcC--CCcEEEEECCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence 34566777788888875 666666653 344443445667889999999998875
No 64
>PRK06524 biotin carboxylase-like protein; Validated
Probab=64.28 E-value=11 Score=33.22 Aligned_cols=51 Identities=6% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCc
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNK 176 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~ 176 (211)
.....++.++-...+.. ..+|++++++|-+-. . +.+|.+. ..-+.|+|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~----~~~~~~~---~~~~~~~~~~~ 63 (493)
T PRK06524 13 RRVLNGLSDIRAFFHNN--TVPLYFISPTPFNLL---------G----IDRWIRN---FFYLTYYDSFD 63 (493)
T ss_pred cccccCHHHHHHHHhcC--CCceEEecCCCcccc---------c----HHHHhhc---eeEEEEEEecC
Confidence 44556777777888877 889999998765432 1 4445544 46777777753
No 65
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=63.54 E-value=27 Score=25.98 Aligned_cols=53 Identities=25% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEec------cCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLEL------LPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~------~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
+.+...+.++++.+++. ++.+|+++. .|.......+++..-.+|+.+.+.|.+
T Consensus 99 ~~~~~~l~~li~~L~~~--~~tvVlVs~Evg~g~vp~~~~~r~~~d~lG~lnq~la~~ad~ 157 (170)
T PRK05800 99 EAIAAEIDALLAALQQL--PAKIILVTNEVGMGIVPEYRLGRHFRDIAGRLNQQLAAAADE 157 (170)
T ss_pred HHHHHHHHHHHHHHHcC--CCCEEEEEcCCcccccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence 44566777888888876 666676664 343333334667888999999988865
No 66
>PRK09483 response regulator; Provisional
Probab=59.91 E-value=69 Score=23.79 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
..+||+|++.+..-|.. -.++++.+++..|..++++++..
T Consensus 45 ~~~~dlvi~d~~~~~~~---------g~~~~~~l~~~~~~~~ii~ls~~ 84 (217)
T PRK09483 45 TNAVDVVLMDMNMPGIG---------GLEATRKILRYTPDVKIIMLTVH 84 (217)
T ss_pred hcCCCEEEEeCCCCCCC---------HHHHHHHHHHHCCCCeEEEEeCC
Confidence 35789999976543321 13466777778899999998864
No 67
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=59.86 E-value=24 Score=27.15 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=43.0
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccch-----------hhHHHHHHHHHH
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINK-----------LWTKNLATNQIL 156 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~-----------~~~~~~~~n~~l 156 (211)
..+||+|++.++.-+.. =.++++.+++.+|.++|++++.......... .......+.+++
T Consensus 44 ~~~pdvvl~Dl~mP~~~---------G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai 114 (211)
T COG2197 44 ELKPDVVLLDLSMPGMD---------GLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAI 114 (211)
T ss_pred hcCCCEEEEcCCCCCCC---------hHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 57999999987665432 2457888889999999999987433221100 012355677777
Q ss_pred HHHhCC
Q psy1995 157 ADKLSP 162 (211)
Q Consensus 157 ~~~~~~ 162 (211)
+..+..
T Consensus 115 ~~v~~G 120 (211)
T COG2197 115 RAVAAG 120 (211)
T ss_pred HHHHCC
Confidence 777653
No 68
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=57.90 E-value=83 Score=24.06 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=44.4
Q ss_pred CCcEEEEccchhcccCcchhHHhhc---CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF---EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~---~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
+.+|+++.|.-.... .+...+ .++.++....+| ...+..+. ..+||+|++.+..-+..
T Consensus 4 ~~~ilivdd~~~~~~----~l~~~L~~~~~~~~v~~a~~~---~~al~~~~-----~~~pdlvllD~~mp~~~------- 64 (225)
T PRK10046 4 PLTLLIVEDETPLAE----MHAEYIRHIPGFSQILLAGNL---AQARMMIE-----RFKPGLILLDNYLPDGR------- 64 (225)
T ss_pred cceEEEECCCHHHHH----HHHHHHHhCCCcEEEEEECCH---HHHHHHHH-----hcCCCEEEEeCCCCCCc-------
Confidence 467899988754321 122222 223233222222 23333332 46789999966544332
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..+..+|++++..+
T Consensus 65 --gle~~~~l~~~~~~~~iivls~~~ 88 (225)
T PRK10046 65 --GINLLHELVQAHYPGDVVFTTAAS 88 (225)
T ss_pred --HHHHHHHHHhcCCCCCEEEEEcCC
Confidence 234666777767778888887643
No 69
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=57.69 E-value=31 Score=26.69 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 90 KPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
+||+|++.+...|.. .+..+.+.+++.+|+++|++++..+
T Consensus 52 ~~DvvllDi~~p~~~--------G~~~~~~~i~~~~p~~~vvvlt~~~ 91 (216)
T PRK10100 52 SGSIILLDMMEADKK--------LIHYWQDTLSRKNNNIKILLLNTPE 91 (216)
T ss_pred CCCEEEEECCCCCcc--------HHHHHHHHHHHhCCCCcEEEEECCc
Confidence 399999987665532 2333346678889999999999854
No 70
>PRK05086 malate dehydrogenase; Provisional
Probab=57.66 E-value=33 Score=28.29 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccCCCC-C-CHHHHHH---HHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-D-SAENIAD---GILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~-~~~~~~~---~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
.+.|+||+.+|..--. . ..+.+.. .+.++++.+++..|++.|++++. |+
T Consensus 68 ~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN-P~ 121 (312)
T PRK05086 68 EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN-PV 121 (312)
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC-ch
Confidence 3589999999985322 2 2334444 68889999999988886666654 55
No 71
>KOG1344|consensus
Probab=57.23 E-value=19 Score=28.41 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=44.9
Q ss_pred CCchhHHHHHHhhcC---CCCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 70 GGDKVEHCLWRVQDG---ILDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 70 ~G~~~~~~~~~~~~~---~~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+|......+..+++. .+...+||.||.+.||.=+. .+++.+.+.=+.+...+|++ +.+|+.++.
T Consensus 225 ~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~--~iPvvMltS 299 (324)
T KOG1344|consen 225 NGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRAL--GIPVVMLTS 299 (324)
T ss_pred cCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHc--CCcEEEEec
Confidence 344444444444321 33478999999999987332 67888888778888899988 888887764
No 72
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.84 E-value=34 Score=27.13 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=9.3
Q ss_pred CCCCcEEEEEecc
Q psy1995 88 SIKPKVIVILVGT 100 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ 100 (211)
..+||+|+|.+|.
T Consensus 155 ~s~~dil~VglG~ 167 (243)
T PRK03692 155 ASGAKIVTVAMGS 167 (243)
T ss_pred hcCCCEEEEECCC
Confidence 4678888887764
No 73
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=56.23 E-value=75 Score=23.81 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEec------cCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLEL------LPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~------~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
+.....++.+++.+.. .+. ++|+++. .|.+.....+++..-.+|+.+.+.|.+
T Consensus 103 ~~~~~~~~~L~~al~~-~~~-~~ilVsNEvG~GiVPe~~l~R~fRD~~G~lnQ~la~~~de 161 (175)
T COG2087 103 AAIEAEIEALLAALSR-APG-TVVLVSNEVGLGIVPEYRLGRLFRDIAGRLNQQLAALADE 161 (175)
T ss_pred hhHHHHHHHHHHHHhc-CCc-cEEEEecCccCCcCcCchhhHHHHHHHhHHHHHHHHhcCe
Confidence 3444555555555543 334 6777663 565555556778899999999999876
No 74
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=56.15 E-value=33 Score=23.78 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
.+||+|.++.= +. .+. ...++++.+|+.+|+++|++=++.+.
T Consensus 38 ~~pdiv~~S~~------~~-~~~-~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 38 LKPDVVGISLM------TS-AIY-EALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred cCCCEEEEeec------cc-cHH-HHHHHHHHHHHHCCCCEEEECCcchh
Confidence 78999998741 11 111 56778999999999998887776544
No 75
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=56.14 E-value=69 Score=25.25 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
..+.++++.+.+..|...+++++.+-.+.....+++.+..+|.+.+++...
T Consensus 5 ~~~~~i~~~~~~~~~~~~~~flTLT~~n~~~~~L~~~l~~m~~a~~rl~~~ 55 (233)
T PF01446_consen 5 YQMSKILEEIMKENPKGRFIFLTLTVKNCKGDELRDTLDHMNKAFRRLFKR 55 (233)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 456778888888888999999998766655556778899999999888776
No 76
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.92 E-value=1.1e+02 Score=27.11 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=87.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEecc-----CCCC--
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT-----NNTE-- 104 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~-----ND~~-- 104 (211)
...+|-.+|.+.+.+....-...-...+ ..++-.|.++.. ..+...- ..+...+||.|++.+-- +=..
T Consensus 18 ~~i~i~~L~n~tl~~l~~~L~~~g~~rgll~~v~~~~Y~~~a-q~i~~~~--s~~~~~~pd~vf~~lDes~i~~~~~~fD 94 (574)
T COG3882 18 TRIEIGILGNRTLSYLADPLGASGLARGLLVNVHEAGYGGWA-QFIFSPK--SCFERFRPDAVFAVLDESALHGERPLFD 94 (574)
T ss_pred eEEEEeecCCcchHHhhhhhcchhhhcceeEEeeecccchhH-HHHcChH--hHHhccCCceEEEEechHhhhccchhcc
Confidence 4467888999988876332111111122 234444555432 2222211 13446899999998861 1001
Q ss_pred CCHH----HHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCcc-------chhhHHHHHHHHHHHHHhCCCCCCCCeEEE
Q psy1995 105 DSAE----NIADGILELIRLVQTKQPQADVVVLELL-PRGKLI-------NKLWTKNLATNQILADKLSPAPLGPKVHLI 172 (211)
Q Consensus 105 ~~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~~-p~~~~~-------~~~~~~~~~~n~~l~~~~~~~~~~~~v~~i 172 (211)
...+ ...+++.++...+.....++++++-+.+ |+.... ....+.....|..+...-+. ..++.++
T Consensus 95 ~~~Ed~~~ll~~~L~~~k~~v~~~~~~~~iii~~l~lp~i~l~~i~~~~~~~~~~~~r~~n~el~n~~~~---~~r~~~f 171 (574)
T COG3882 95 RVAEDEAVLLAERLASIKQAVARSKTGCPIIIATLPLPCISLKSILIATEGEFSARWRLRNNELLNDGKA---EGRWLMF 171 (574)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCCcEEEecCCccccccchhhccCchhHHHHHHHHHHHHhhhhhc---ccceeec
Confidence 2233 3445666666666665678888887765 544321 11334445555555554443 3678888
Q ss_pred eCCcccc--ccCCCCc-cCCCCCCCCCCHHHHHHHhhhhh
Q psy1995 173 QHNKDEI--ISKDEIS-QGDFYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 173 D~~~~~~--~~~~~~~-~~~~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
|...... ....... ..|+.-++-.|-++..+++..++
T Consensus 172 D~~~l~srig~~~~~d~k~~~~a~~~~n~e~~~l~~~ei~ 211 (574)
T COG3882 172 DQEALASRIGIERWFDPKAYHSASVPFNVELCPLAADEIA 211 (574)
T ss_pred cHHHHHhHhhhhhhcchHHHHhccCCcchhhhhHhhHHHH
Confidence 8754432 1111111 12334556666666666655543
No 77
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=54.06 E-value=60 Score=27.41 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCC-ccc---hhhHHHHHHHHHHHHHhCCCCCCCCe-EEEeCCccccccCCCCc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGK-LIN---KLWTKNLATNQILADKLSPAPLGPKV-HLIQHNKDEIISKDEIS 186 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~-~~~---~~~~~~~~~n~~l~~~~~~~~~~~~v-~~iD~~~~~~~~~~~~~ 186 (211)
.+++-+++..++. ++.++++.+ |++. ..+ ...+....+-+-++...+. .|. .+.|+. +.++ .
T Consensus 295 ~Dlqlll~~f~ka--gadv~FV~~-PvNgkW~dYtG~~k~~~q~~y~Kik~Ql~s----qGF~~iaDfs----~~~~--e 361 (415)
T COG3966 295 QDLQLLLDTFKKA--GADVIFVII-PVNGKWYDYTGLNKDGRQAYYKKIKSQLRS----QGFTQIADFS----DDGY--E 361 (415)
T ss_pred ccHHHHHHHHHhc--CCCeEEEec-CCCCceecccCcCHHHHHHHHHHHHHHHHH----cCceeehhhh----ccCC--C
Confidence 3678899999998 888888876 4443 221 1223445555555555555 666 444442 2221 3
Q ss_pred cCCCCCCCCCCHHHHHHHhhhhh
Q psy1995 187 QGDFYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 187 ~~~~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
+.++.|-+|+.=.|--.+-++|.
T Consensus 362 pyfm~DtIHlGWkGWv~~Dkai~ 384 (415)
T COG3966 362 PYFMKDTIHLGWKGWVAFDKAIA 384 (415)
T ss_pred cceeccceeecchhHHHHHHHHH
Confidence 45569999999999877666654
No 78
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=53.50 E-value=35 Score=26.10 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=28.0
Q ss_pred CCCCcEEEEEec--cCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVG--TNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G--~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
..+||+|++.+= ..+ +. . .++++.+++.+|+++|++++..
T Consensus 45 ~~~pDlvLlDl~~~l~~----~~----g-~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 45 SLRPSVVFINEDCFIHD----AS----N-SQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred ccCCCEEEEeCcccCCC----CC----h-HHHHHHHHHHCCCCeEEEEECC
Confidence 357999999721 111 11 1 2489999999999999999865
No 79
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=53.46 E-value=11 Score=30.77 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=30.1
Q ss_pred EEEeccCCCC----------------C--CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 95 VILVGTNNTE----------------D--SAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 95 vi~~G~ND~~----------------~--~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
++++|+||+. . ....+...+..+++..++. +.+|-+.+-..
T Consensus 200 F~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~--g~~vsvCGe~a 258 (293)
T PF02896_consen 200 FFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKA--GKPVSVCGEMA 258 (293)
T ss_dssp EEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHT--T-EEEEESGGG
T ss_pred EEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhc--CcEEEEecCCC
Confidence 6899999974 1 1245777888888888888 88888887643
No 80
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=53.19 E-value=33 Score=28.05 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCCcEEEEEeccCCCC-CCH-H---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-E---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|+.... .+. + .-..-+.++...+++..|++.+++.+.
T Consensus 65 ~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 65 ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 4789999999986433 222 2 234467888999999999999888874
No 81
>KOG2792|consensus
Probab=52.91 E-value=97 Score=24.94 Aligned_cols=72 Identities=8% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCCcEEEEEeccCCCC-CCHHHHHHHHHHHHHHHHhhCCCCe--EEEEeccCCCCccchhhHHHHHHH----------HH
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENIADGILELIRLVQTKQPQAD--VVVLELLPRGKLINKLWTKNLATN----------QI 155 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~~~~~~~~i~~i~~~~p~~~--ii~~~~~p~~~~~~~~~~~~~~~n----------~~ 155 (211)
..-.+++|.+|---+- .-|+++. .+...|+.|.+. ++.+ .+++++-|....+....+.+.+|+ .+
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELe-Km~~~Vd~i~~~-~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eq 214 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELE-KMSAVVDEIEAK-PGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQ 214 (280)
T ss_pred cccceEEEEecccCCCCcChHHHH-HHHHHHHHHhcc-CCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHH
Confidence 4557888888876554 4455544 456677777765 3443 356777777665544333344443 44
Q ss_pred HHHHhCC
Q psy1995 156 LADKLSP 162 (211)
Q Consensus 156 l~~~~~~ 162 (211)
++++|++
T Consensus 215 vk~vak~ 221 (280)
T KOG2792|consen 215 VKQVAKK 221 (280)
T ss_pred HHHHHHH
Confidence 6666665
No 82
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=52.89 E-value=82 Score=23.96 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=41.9
Q ss_pred CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCC--CCeEEEEec
Q psy1995 60 EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQP--QADVVVLEL 135 (211)
Q Consensus 60 ~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p--~~~ii~~~~ 135 (211)
.++.+++.| ......++...+. ..+||+|-++.-... ....+.++++.+++..| +.+|++=+.
T Consensus 109 ~G~~vi~lG-~~~p~~~l~~~~~-----~~~~d~v~lS~~~~~-------~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 109 NGFEVIDLG-RDVPPEEFVEAVK-----EHKPDILGLSALMTT-------TMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred CCCEEEECC-CCCCHHHHHHHHH-----HcCCCEEEEeccccc-------cHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 467787777 3344566666554 479999988763221 23457889999999877 666666554
No 83
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=52.81 E-value=23 Score=27.08 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 105 DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 105 ~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+|+++.+.+.++++..++++...++++++.
T Consensus 45 rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGY 75 (192)
T PF06057_consen 45 RTPEQTAADLARIIRHYRARWGRKRVVLIGY 75 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCceEEEEee
Confidence 7899999999999999999998999999885
No 84
>PTZ00063 histone deacetylase; Provisional
Probab=52.71 E-value=22 Score=30.80 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 85 ILDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 85 ~~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
++..++|++||+..|..-.. .+.+.+ .++++.+++. +.+++++.
T Consensus 245 ~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~----~~~~~~~~~~--~~pil~l~ 296 (436)
T PTZ00063 245 CVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGH----AACVEFVRSL--NIPLLVLG 296 (436)
T ss_pred HHHHhCCCEEEEECCccccCCCCCCCcccCHHHH----HHHHHHHHhc--CCCEEEEe
Confidence 34478999999999976443 444544 4466667765 55666654
No 85
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.60 E-value=46 Score=27.86 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=29.4
Q ss_pred CCCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 85 ILDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 85 ~~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
.+..++||+||++.|.--.. .+.+.|....+.+.+..+.. ...-++++.
T Consensus 234 ~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~-~~~~~~vle 290 (340)
T COG0123 234 LLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGY-GGPVVAVLE 290 (340)
T ss_pred HHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhc-CCCeEEEec
Confidence 44479999999999975322 55666665555555554544 233344443
No 86
>PTZ00346 histone deacetylase; Provisional
Probab=52.30 E-value=22 Score=30.74 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 85 ILDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 85 ~~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
++..++||+||+..|.--.. .+.+.+ .++++.+++. +.+++++
T Consensus 263 ~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~----~~~~~~l~~~--~~plv~v 313 (429)
T PTZ00346 263 IVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGH----GQCVQAVRDL--GIPMLAL 313 (429)
T ss_pred HHHhcCCCEEEEECCccCCCCCCCCCceeCHHHH----HHHHHHHHhc--CCCEEEE
Confidence 34478999999999976433 455554 4466666665 4555554
No 87
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=52.21 E-value=13 Score=29.99 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=40.4
Q ss_pred cEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC---CCHH-HH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE---DSAE-NI 110 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~---~~~~-~~ 110 (211)
+|+++|.|=.-|. ...+.+.. ..++..+..-....+. ..+.+ .+...+||+||-..|..+.. ..++ .+
T Consensus 2 riLI~GasG~lG~----~l~~~l~~~~~~v~~~~r~~~dl~d~-~~~~~-~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~ 75 (286)
T PF04321_consen 2 RILITGASGFLGS----ALARALKERGYEVIATSRSDLDLTDP-EAVAK-LLEAFKPDVVINCAAYTNVDACEKNPEEAY 75 (286)
T ss_dssp EEEEETTTSHHHH----HHHHHHTTTSEEEEEESTTCS-TTSH-HHHHH-HHHHH--SEEEE------HHHHHHSHHHHH
T ss_pred EEEEECCCCHHHH----HHHHHHhhCCCEEEEeCchhcCCCCH-HHHHH-HHHHhCCCeEeccceeecHHhhhhChhhhH
Confidence 6899998755552 22333332 3344332222111111 11111 22246899999888876644 2333 23
Q ss_pred H---HHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 111 A---DGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 111 ~---~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
. .....+.+.+++. +++++.++.
T Consensus 76 ~iN~~~~~~la~~~~~~--~~~li~~ST 101 (286)
T PF04321_consen 76 AINVDATKNLAEACKER--GARLIHIST 101 (286)
T ss_dssp HHHTHHHHHHHHHHHHC--T-EEEEEEE
T ss_pred HHhhHHHHHHHHHHHHc--CCcEEEeec
Confidence 3 3345566666666 888888886
No 88
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=52.20 E-value=40 Score=26.95 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceE--EeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 25 EHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCL--AFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 25 ~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~--n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
..+++....+..+|.++|..=-..-.....+++.+++..++ ..|.-...-. +.+.+ .+...+||+|++.+|.=
T Consensus 98 ~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~---~~i~~-~I~~s~pdil~VgmG~P 172 (253)
T COG1922 98 EALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE---EAIVE-RIAASGPDILLVGMGVP 172 (253)
T ss_pred HHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhH---HHHHH-HHHhcCCCEEEEeCCCc
Confidence 33444455556889999976322212223455666644433 2233222222 23322 22257899999888753
No 89
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=51.94 E-value=46 Score=23.81 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccCCCC-CCHH----HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAE----NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|+||+..|.--.. .+.. .-.+-++++.+.+++..|++.+++++.
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence 4789999988875222 3332 334567888899999999998888765
No 90
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=51.61 E-value=34 Score=23.17 Aligned_cols=28 Identities=4% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.++|.++|.++++.+++ .|+.+|-++..
T Consensus 3 S~~Fv~Nm~~Iv~~l~~-~~~~~I~iv~~ 30 (103)
T PF06935_consen 3 SPEFVENMKKIVERLRN-DPGEPIEIVDG 30 (103)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCCEEEEEC
Confidence 46899999999999987 57888888775
No 91
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=51.61 E-value=35 Score=27.49 Aligned_cols=95 Identities=9% Similarity=0.178 Sum_probs=52.6
Q ss_pred ceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----------CCHHHHHHHHHHHHHHHHhhCCCCeEEE
Q psy1995 63 HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----------DSAENIADGILELIRLVQTKQPQADVVV 132 (211)
Q Consensus 63 ~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----------~~~~~~~~~~~~~i~~i~~~~p~~~ii~ 132 (211)
-++|.++.|.+ ...++++ ..+||+++|....++-- ..++.. .+=..++...++. +++.++
T Consensus 66 IVv~q~vpGt~--~af~kIk-----ekRpDIl~ia~~~~EDp~~i~~~aDi~~~~D~~-~~G~~i~~~Ak~m--GAktFV 135 (275)
T PF12683_consen 66 IVVSQAVPGTA--EAFRKIK-----EKRPDILLIAGEPHEDPEVISSAADIVVNPDEI-SRGYTIVWAAKKM--GAKTFV 135 (275)
T ss_dssp EEEE-SS---H--HHHHHHH-----HH-TTSEEEESS--S-HHHHHHHSSEEEE--HH-HHHHHHHHHHHHT--T-S-EE
T ss_pred EEEeCCCcchH--HHHHHHH-----hcCCCeEEEcCCCcCCHHHHhhccCeEeccchh-hccHHHHHHHHHc--CCceEE
Confidence 35677887744 3445554 36899999988766521 223333 3335577777777 887777
Q ss_pred EeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 133 LELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 133 ~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
--.+|+..+. +....-.+.+++.|++ .|+.|+...
T Consensus 136 h~sfprhms~----~~l~~Rr~~M~~~C~~----lGi~fv~~t 170 (275)
T PF12683_consen 136 HYSFPRHMSY----ELLARRRDIMEEACKD----LGIKFVEVT 170 (275)
T ss_dssp EEEETTGGGS----HHHHHHHHHHHHHHHH----CT--EEEEE
T ss_pred EEechhhcch----HHHHHHHHHHHHHHHH----cCCeEEEEe
Confidence 6666766542 2355666678888988 899988764
No 92
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=51.22 E-value=66 Score=25.12 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=43.6
Q ss_pred cEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEE---eccCCCCCCHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVIL---VGTNNTEDSAENIADG 113 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~---~G~ND~~~~~~~~~~~ 113 (211)
+|+++=|-.+..--. ..+-+..+++.++..+-++.....++. ..+||+|++- -+.|.
T Consensus 2 ~VLIiEDD~mVaeih-~~yv~~~~gF~~vg~A~~~~ea~~~i~--------~~~pDLILLDiYmPd~~G----------- 61 (224)
T COG4565 2 NVLIIEDDPMVAEIH-RRYVKQIPGFSVVGTAGTLEEAKMIIE--------EFKPDLILLDIYMPDGNG----------- 61 (224)
T ss_pred cEEEEcCchHHHHHH-HHHHHhCCCceEEEeeccHHHHHHHHH--------hhCCCEEEEeeccCCCcc-----------
Confidence 466666654432111 112234455555554444433333322 4677888874 33333
Q ss_pred HHHHHHHHHhhCCCCeEEEEec
Q psy1995 114 ILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
-+++..+++.+..+.||+++.
T Consensus 62 -i~lL~~ir~~~~~~DVI~iTA 82 (224)
T COG4565 62 -IELLPELRSQHYPVDVIVITA 82 (224)
T ss_pred -HHHHHHHHhcCCCCCEEEEec
Confidence 347888888888889998886
No 93
>PLN00135 malate dehydrogenase
Probab=51.09 E-value=42 Score=27.69 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=35.5
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhh-CCCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTK-QPQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~-~p~~~ii~~~~~p~ 138 (211)
.+.|+|||..|...-. .+..+ -.+-++++...+.+. .|++.+++++. |+
T Consensus 57 ~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsN-Pv 111 (309)
T PLN00135 57 KGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVAN-PA 111 (309)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCC-cH
Confidence 5789999999997544 23322 334678888888885 79999888884 44
No 94
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=50.57 E-value=40 Score=27.81 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|+||+..|...-. .+..+ -..-++++++.+++..|++.+++.+.
T Consensus 72 ~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 72 KDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 4689999999987543 23222 23456788889999999998888774
No 95
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=50.55 E-value=78 Score=23.47 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=33.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchh
Q psy1995 90 KPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKL 145 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~ 145 (211)
+-.+++|.+|-=-+...=......+.++.+.+.+...+.+++.++.-|....|..+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L 106 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVL 106 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHH
Confidence 34566777765555322244555677777777766446788888888877665433
No 96
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=49.18 E-value=1.4e+02 Score=24.17 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=46.7
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.+...|+||.+...-+.+. -|+.=+|.+|-|-.. .+.+++.+...++++.+.+++ ++++++.+
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~--------LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~--ik~lVIAC 75 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQ--------LPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG--IKALVIAC 75 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHH--------CCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC--CCEEEEec
Confidence 456788999998865544332 233335667777654 678899999999999999994 77777765
No 97
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=48.40 E-value=95 Score=27.51 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCcEEEEEec------cCCCC---CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC
Q psy1995 89 IKPKVIVILVG------TNNTE---DSAENIADGILELIRLVQTKQPQADVVVLELLPRGK 140 (211)
Q Consensus 89 ~~pd~Vvi~~G------~ND~~---~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~ 140 (211)
.+.|.+||++- .=..+ .+.++..+.+ +.++.+|+.+|+.+|+..++.++..
T Consensus 57 ~~~d~~ViS~D~L~yGGLv~SR~~~~~~~~~~~rl-~~l~~lk~~~p~~~iyaf~~ImR~~ 116 (497)
T PF13552_consen 57 PDADAAVISTDMLLYGGLVPSRIHHLSLEEALERL-ERLRELKARNPNLPIYAFSTIMRTP 116 (497)
T ss_pred ccCCEEEEEHHhhhhcCcHhhcCCCCCHHHHHHHH-HHHHHHHHHCCCCeEEEEEEEeccC
Confidence 37888988752 11111 3556666655 7888999999999999999877654
No 98
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=48.38 E-value=62 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.3
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE
Q psy1995 93 VIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVV 132 (211)
Q Consensus 93 ~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~ 132 (211)
++++..|+-| ++..+.+..+.+.+++.+|+..|.+
T Consensus 3 illv~fGS~~-----~~~~~~~~~i~~~l~~~~p~~~V~~ 37 (127)
T cd03412 3 ILLVSFGTSY-----PTAEKTIDAIEDKVRAAFPDYEVRW 37 (127)
T ss_pred EEEEeCCCCC-----HHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 5677777765 2455677788888888888877654
No 99
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.86 E-value=77 Score=21.41 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=38.2
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
++.+...+..-. ...+.+.+. ..+||+|.++.-... ......++++.+|+..|+++|++=++.
T Consensus 28 G~~v~~~d~~~~-~~~l~~~~~-----~~~pd~V~iS~~~~~-------~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 28 GHEVDILDANVP-PEELVEALR-----AERPDVVGISVSMTP-------NLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TBEEEEEESSB--HHHHHHHHH-----HTTCSEEEEEESSST-------HHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CCeEEEECCCCC-HHHHHHHHh-----cCCCcEEEEEccCcC-------cHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 445554433321 144445443 369999988763211 123357788889999999988877664
No 100
>KOG2126|consensus
Probab=47.22 E-value=14 Score=34.49 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCC-----cceEEeccCCchhH--HHHHHhhcCCCCCCCCcEEEEE
Q psy1995 25 EHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEP-----LHCLAFGIGGDKVE--HCLWRVQDGILDSIKPKVIVIL 97 (211)
Q Consensus 25 ~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~-----~~~~n~g~~G~~~~--~~~~~~~~~~~~~~~pd~Vvi~ 97 (211)
+-++.+......+++++|||. |..+|++ ...-.+++.+..+- .+.+.+-+ .+...+.|++|-+
T Consensus 144 DNfv~Ql~~~gk~vvflGDdT---------W~~LFp~~f~~s~s~pSfnv~DLdtVDn~v~~~if~-~l~s~dwdVlIAH 213 (895)
T KOG2126|consen 144 DNFVRQLVLNGKSVVFLGDDT---------WTSLFPNQFNKSYSFPSFNVHDLDTVDNGVIEKIFK-SLNSKDWDVLIAH 213 (895)
T ss_pred hHHHHHHHHCCCeEEEecCcc---------HHHhChHhhcCCCCCCCCCCccccccchHHHHHhhh-hhccCchHHHHHH
Confidence 445666777888999999996 6666653 22235555554432 34555544 3334567777765
Q ss_pred -eccCCCC--CCH-----HHHHHHHHHHHHHHHhhCC-CCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 98 -VGTNNTE--DSA-----ENIADGILELIRLVQTKQP-QADVVVLELLPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 98 -~G~ND~~--~~~-----~~~~~~~~~~i~~i~~~~p-~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
+|..-++ ..| ++-...+.++|+.+-+.-. ++-.++++=-=++...+.--+..+++|+.+=.+-++
T Consensus 214 fLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mdedTlLvVmGDHGMt~nGdHGGdS~dEv~a~lf~ySKk 287 (895)
T KOG2126|consen 214 FLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDEDTLLVVMGDHGMTDNGDHGGDSEDEVEATLFAYSKK 287 (895)
T ss_pred HhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhccCeeEEEecCCCCCCCCCCCCccHHHhhhheeEEecC
Confidence 6666665 222 1223344555555544332 555666663222211111112356666665555444
No 101
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.80 E-value=20 Score=28.25 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=48.5
Q ss_pred HhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 30 LAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 30 ~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
........++++|||||.- ..+. ...+..-...+++|.- -.+ ...|+.|++--.--...-.+.
T Consensus 201 ele~~d~sa~~VGDSItDv----~ml~-~~rgrGglAvaFNGNe----------Yal--~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 201 ELEGIDFSAVVVGDSITDV----KMLE-AARGRGGLAVAFNGNE----------YAL--KEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred hhcCCCcceeEecCcccch----HHHH-HhhccCceEEEecCCc----------ccc--cccceEEeccchhhhhHHHHH
Confidence 3455667799999999964 1111 2223333444455521 022 356777764321111111233
Q ss_pred H-HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 110 I-ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 110 ~-~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+ ...-....+.+++..|...+.++..
T Consensus 264 f~e~Gkd~a~E~~~a~spE~e~~~lnn 290 (315)
T COG4030 264 FMERGKDRAFEVLSAVSPETEIYILNN 290 (315)
T ss_pred HHHHhHHHHHHHHHhhCcccceecccC
Confidence 3 2335667888888888888887774
No 102
>PTZ00325 malate dehydrogenase; Provisional
Probab=45.41 E-value=63 Score=26.81 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccCCCC-CCH-HHHHH---HHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-ENIAD---GILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~~~~~---~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|..... .+. +.+.. .+..+++.+++..|+..|++.+.
T Consensus 75 ~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SN 126 (321)
T PTZ00325 75 RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSN 126 (321)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4679999999987543 233 33334 68889999999988876665554
No 103
>PF14286 DHHW: DHHW protein
Probab=45.13 E-value=1.1e+02 Score=26.03 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccCCCC-c-cc---hh-hHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLPRGK-L-IN---KL-WTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDE 184 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~-~-~~---~~-~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~ 184 (211)
.+.+...|..+.+..|+.+|.+|-+|-... . +. .. ..........+..... .++.+||+++.|.....
T Consensus 153 ~~~~a~~in~~a~~l~~~~vy~mlvPta~~i~~~~~~~~~~~~dq~~~i~~~~~~L~-----~~I~~ID~~~~L~~hk~- 226 (378)
T PF14286_consen 153 VDKYASAINSFAKKLPNINVYFMLVPTASEIYLPDLPKYAPSYDQKQNIDYIYSMLD-----KNIKFIDVYDTLKKHKD- 226 (378)
T ss_pred HHHHHHHHHHHHHHCCCCceEEEEccChhhhcCccccchhccccHHHHHHHHHHHhh-----cCceEEehHHHHhhccc-
Confidence 444566677778888899988887642221 1 11 11 1112222233333332 58999999988865321
Q ss_pred CccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 185 ISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 185 ~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
-..|+.=.-|=|..|.-..++.+++
T Consensus 227 -E~iYyrTDHHWt~~GAyyay~~~~~ 251 (378)
T PF14286_consen 227 -EYIYYRTDHHWTTLGAYYAYQEFAK 251 (378)
T ss_pred -cceEeeccCCcccchHHHHHHHHHH
Confidence 1123433349999987777666654
No 104
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=45.12 E-value=58 Score=25.00 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCCcEEEE---EeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVI---LVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi---~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...||+|++ .++..+.. . -++++.+++.+|.++|++++..
T Consensus 35 ~~~pd~vl~dl~d~~mp~~~--------G-l~~~~~l~~~~p~~~iIvlt~~ 77 (207)
T PRK11475 35 RISFSAVIFSLSAMRSERRE--------G-LSCLTELAIKFPRMRRLVIADD 77 (207)
T ss_pred cCCCCEEEeeccccCCCCCC--------H-HHHHHHHHHHCCCCCEEEEeCC
Confidence 356899984 33332221 1 3478888889999999999863
No 105
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=45.06 E-value=63 Score=26.67 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCCCcEEEEEeccCCCC-CCH-H---HHHHHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 88 SIKPKVIVILVGTNNTE-DSA-E---NIADGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~-~~~-~---~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
-...|+||+..|..-.. .+. + .-.+-++++...+.+..|++.+++++. |+
T Consensus 65 ~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN-Pv 119 (312)
T TIGR01772 65 LKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN-PV 119 (312)
T ss_pred cCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC-ch
Confidence 35789999999975322 222 2 233467788888888999998887776 44
No 106
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=44.95 E-value=72 Score=26.16 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCCcEEEEEeccCCCC-CCH-H---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-E---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|+..-. .+. + .-.+.+.++++.+.+..|++.|++.+.
T Consensus 68 ~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 68 ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4679999999986432 221 2 233456677788888888988777765
No 107
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=44.86 E-value=20 Score=25.60 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=52.9
Q ss_pred EEEEccchhcccCcc---hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC--CCCCCHHHH
Q psy1995 38 LVFIGDSLISFLTQT---QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN--NTEDSAENI 110 (211)
Q Consensus 38 il~iGDS~t~g~~~~---~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N--D~~~~~~~~ 110 (211)
|+.+||.+..|-... ....+.+ .+..+...++-.+....+.+.+.. .+. +.|+||...|+- +...+++.+
T Consensus 2 Ii~~GdEl~~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~-~~~--~~D~VittGG~g~~~~D~t~~a~ 78 (144)
T PF00994_consen 2 IISTGDELLSGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRR-ALD--RADLVITTGGTGPGPDDVTPEAL 78 (144)
T ss_dssp EEEECHHHHTTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHH-HHH--TTSEEEEESSSSSSTTCHHHHHH
T ss_pred EEEECccCcCCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHh-hhc--cCCEEEEcCCcCcccCCcccHHH
Confidence 789999999885221 1122222 355777788888888888888754 332 449999987664 222445555
Q ss_pred HHHHH-------HHHHHHHhhC
Q psy1995 111 ADGIL-------ELIRLVQTKQ 125 (211)
Q Consensus 111 ~~~~~-------~~i~~i~~~~ 125 (211)
.+... .++..+..+.
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~p 100 (144)
T PF00994_consen 79 AEAGGRELPGFEELFRGVSMRP 100 (144)
T ss_dssp HHHSSEE-HHHHHHHHHHHHHS
T ss_pred HHhcCcccccChHHHHHHHHHh
Confidence 44433 6666666663
No 108
>COG2403 Predicted GTPase [General function prediction only]
Probab=44.84 E-value=69 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 110 IADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
..+.++++.+.+++.+|++.|+..
T Consensus 282 ~~~kvrkI~~~I~~iNP~A~Vi~~ 305 (449)
T COG2403 282 MAEKVRKIVRNIEEINPKAEVILA 305 (449)
T ss_pred chHHHHHHHHHHHhhCCCcEEEec
Confidence 445889999999999999998876
No 109
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=44.82 E-value=62 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=26.2
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 93 VIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 93 ~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.|+|.+|+|= .+-.+++++.++.+++. |+.+++.++.
T Consensus 3 ~v~i~lGSN~-----g~~~~~l~~A~~~L~~~-~~~~i~~~S~ 39 (159)
T PRK10239 3 VAYIAIGSNL-----ASPLEQVNAALKALGDI-PESRILAVSS 39 (159)
T ss_pred EEEEEEeCch-----hhHHHHHHHHHHHHhcC-CCCeEEEECC
Confidence 5899999993 23356677777877665 7777776664
No 110
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=44.39 E-value=28 Score=32.47 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.9
Q ss_pred EEEeccCCCC--------C----------CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 95 VILVGTNNTE--------D----------SAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 95 vi~~G~ND~~--------~----------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
|+++||||+. . .-..+.+.+..+++..++. +.+|-+++-..
T Consensus 614 F~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~--g~~v~vCGe~a 672 (748)
T PRK11061 614 FISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQH--GLPVSLCGEMA 672 (748)
T ss_pred EEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhC--cCEEEEcCCcc
Confidence 6899999985 0 1234556667777777776 88888887543
No 111
>PRK03670 competence damage-inducible protein A; Provisional
Probab=43.60 E-value=1.5e+02 Score=23.74 Aligned_cols=63 Identities=30% Similarity=0.333 Sum_probs=40.6
Q ss_pred cEEEEccchhcccCcc---hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 37 ELVFIGDSLISFLTQT---QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~---~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
-|+.+||.+..|-... ....+.+ .+..+.-..+-++....+.+.+.. .+ ....|+||+..|+=
T Consensus 4 ~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~-a~-~~~~DlVIttGGlG 71 (252)
T PRK03670 4 EIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLE-IL-SRKPEVLVISGGLG 71 (252)
T ss_pred EEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHH-Hh-hCCCCEEEECCCcc
Confidence 4889999998774211 1112222 256677777888888888887764 33 23579999986643
No 112
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=42.16 E-value=63 Score=26.41 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccCCCC-CCH-H---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-E---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|+||+..|...-. .+. + .-..-++++.+.+++..|++.+++++.
T Consensus 67 ~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 67 KDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4789999999876333 222 2 233457888899999999998887774
No 113
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.14 E-value=60 Score=26.77 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccCCCC-CCHH----HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAE----NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|..-.. .+-. .-..-++++.+.+++..|++.+++++.
T Consensus 70 ~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 70 ANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 4679999999976443 2332 233457888899999999998888875
No 114
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=42.02 E-value=1.4e+02 Score=23.05 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=28.7
Q ss_pred CCcEEEEEec-cCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc
Q psy1995 90 KPKVIVILVG-TNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN 143 (211)
Q Consensus 90 ~pd~Vvi~~G-~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~ 143 (211)
+.++|||+=| -|+ ..+. ..+.++.++++ ..+|++++|.|....+.
T Consensus 150 ~t~vvIiSDg~~~~---~~~~----~~~~l~~l~~r--~~rviwLnP~~~~~~~~ 195 (222)
T PF05762_consen 150 RTTVVIISDGWDTN---DPEP----LAEELRRLRRR--GRRVIWLNPLPRAGWPG 195 (222)
T ss_pred CcEEEEEecccccC---ChHH----HHHHHHHHHHh--CCEEEEECCcccccCCC
Confidence 5567777644 222 1222 34557777777 88999999987666543
No 115
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=41.33 E-value=53 Score=29.47 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=40.6
Q ss_pred eccCCchhHHHHHHhhcCCCCCCCCcE---EEEEeccCCCC--------------CCHHHHHHHHHHHHHHHHhhCCCCe
Q psy1995 67 FGIGGDKVEHCLWRVQDGILDSIKPKV---IVILVGTNNTE--------------DSAENIADGILELIRLVQTKQPQAD 129 (211)
Q Consensus 67 ~g~~G~~~~~~~~~~~~~~~~~~~pd~---Vvi~~G~ND~~--------------~~~~~~~~~~~~~i~~i~~~~p~~~ 129 (211)
.|.+|.-.....-.+.. ...+.+|+. |+|..|||.-. .+-++|.+-++++++.+++.+|++-
T Consensus 166 lG~~Gm~I~~GKl~Ly~-a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P~~~ 244 (559)
T PTZ00317 166 LGANGMGISIGKLSLYV-AGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWPNAV 244 (559)
T ss_pred cccccccccccHHHHHH-hhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCCCeE
Confidence 34444444333333332 334567665 56899999321 4567899999999999999999963
No 116
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.28 E-value=69 Score=26.43 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCCCcEEEEEeccCCCC-CCH-H---HHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTE-DSA-E---NIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~-~~~-~---~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-...|+||+..|..--. .+- + .-.+.+.++.+.+++..|++.+++++.|
T Consensus 66 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 66 LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred cCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 35789999999986222 222 2 2334677888888999999988877763
No 117
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.11 E-value=1.2e+02 Score=25.05 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=26.0
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 92 KVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 92 d~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
+.|++..|+|= .++...++.+-+.|.+.+|+-+||.+.
T Consensus 88 ~~i~~~GGGNl-----GDLypd~q~fRe~Iistf~d~~iI~lP 125 (339)
T COG5039 88 DIIFFTGGGNL-----GDLYPDYQNFREKIISTFPDYKIIILP 125 (339)
T ss_pred ceEEEeCCCch-----hhcchhhHHHHHHHHHhCCCCceEecc
Confidence 78888899982 223344555666777788888888653
No 118
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=40.96 E-value=58 Score=29.40 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=41.9
Q ss_pred eccCCchhHHHHHHhhcCCCCCCCCcE---EEEEeccCCCC--------------CCHHHHHHHHHHHHHHHHhhC-CCC
Q psy1995 67 FGIGGDKVEHCLWRVQDGILDSIKPKV---IVILVGTNNTE--------------DSAENIADGILELIRLVQTKQ-PQA 128 (211)
Q Consensus 67 ~g~~G~~~~~~~~~~~~~~~~~~~pd~---Vvi~~G~ND~~--------------~~~~~~~~~~~~~i~~i~~~~-p~~ 128 (211)
.|.+|.-.....-.+.. ...+.+|+. |+|..|||+-. .+-++|.+.++++++.+++.| |++
T Consensus 189 lG~~Gm~I~~GKl~Ly~-a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~ 267 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYT-AAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKV 267 (581)
T ss_pred cCCCccccchhHHHHHH-hhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCcc
Confidence 33444443333333333 344667654 57899999721 456789999999999999999 666
Q ss_pred eEEE
Q psy1995 129 DVVV 132 (211)
Q Consensus 129 ~ii~ 132 (211)
-|=+
T Consensus 268 ~I~~ 271 (581)
T PLN03129 268 LVQF 271 (581)
T ss_pred EEeh
Confidence 4433
No 119
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.74 E-value=74 Score=26.38 Aligned_cols=49 Identities=6% Similarity=-0.027 Sum_probs=34.8
Q ss_pred CCCcEEEEEeccCCCC-CCHH----HHHHHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAE----NIADGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~----~~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
.+.|+|||..|..... .+.. .-.+-++++...+.+.. |++.+++++. |+
T Consensus 77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN-Pv 131 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN-PC 131 (322)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC-cH
Confidence 5789999999986433 2322 23446788889999988 4998888874 54
No 120
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=40.61 E-value=73 Score=25.31 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCcEEEEEeccCCCC-C----CHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-D----SAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~----~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|+||+..|.-... . ...+-..-++++.+.+++.+|++.+++.+.
T Consensus 69 ~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 69 KDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4688999988764332 1 223344567888999999999998888764
No 121
>PRK13529 malate dehydrogenase; Provisional
Probab=40.34 E-value=71 Score=28.74 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=40.6
Q ss_pred eccCCchhHHHHHHhhcCCCCCCCCcE---EEEEeccCCCC--------------CCHHHHHHHHHHHHHHHHhhCCCC
Q psy1995 67 FGIGGDKVEHCLWRVQDGILDSIKPKV---IVILVGTNNTE--------------DSAENIADGILELIRLVQTKQPQA 128 (211)
Q Consensus 67 ~g~~G~~~~~~~~~~~~~~~~~~~pd~---Vvi~~G~ND~~--------------~~~~~~~~~~~~~i~~i~~~~p~~ 128 (211)
.|.+|.-.....-.+.. ...+.+|.. |+|..|||+-. .+-++|.+-++++++.+++.+|.+
T Consensus 164 lG~~Gm~I~~GKl~Ly~-a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~P~~ 241 (563)
T PRK13529 164 QGIGGMGIPIGKLSLYT-ACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRFPNA 241 (563)
T ss_pred cCCCcccccccHHHHhh-ccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhCCCe
Confidence 34444444333333333 344667654 57889998621 456789999999999999999996
No 122
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=40.30 E-value=60 Score=26.54 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=33.5
Q ss_pred CCCcEEEEEeccCCCC-CCH-H---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-E---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|+|||..|..--. .+- + .-.+-++++.+.+++..|++.+++++.
T Consensus 63 ~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 63 KDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4779999999975322 222 2 233457788888898999999888875
No 123
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=40.19 E-value=68 Score=23.62 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCcEEEEccchhcccCcch-hHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQ-IWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAEN 109 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~-~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~ 109 (211)
+.-|+.+||++........ .....+ .+..+.-.++-.+....+.+.+++ .++..+.|+||+..|+--.. .+++.
T Consensus 6 rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~-~~~~~~~DlVIttGGtg~g~~D~t~ea 84 (163)
T TIGR02667 6 RIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSA-WIADPDVQVILITGGTGFTGRDVTPEA 84 (163)
T ss_pred EEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHH-HHhcCCCCEEEECCCcCCCCCCCcHHH
Confidence 4457889998765432211 122222 245677778888888877777764 33235789999987655332 45554
Q ss_pred HH
Q psy1995 110 IA 111 (211)
Q Consensus 110 ~~ 111 (211)
+.
T Consensus 85 l~ 86 (163)
T TIGR02667 85 LE 86 (163)
T ss_pred HH
Confidence 43
No 124
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=40.12 E-value=77 Score=26.31 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=34.6
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCC-CCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQP-QADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p-~~~ii~~~~~p~ 138 (211)
.+.|+|||..|...-. .+..+ -.+-++++...+.+..| ++.+++++ .|+
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPv 132 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG-NPA 132 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcH
Confidence 4679999999986433 33332 23467888889999887 88887776 454
No 125
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=39.88 E-value=1e+02 Score=24.90 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 76 HCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 76 ~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
.+.+++.. .....+||++|+.+|+-=......-|.++++++-..+-.. ++-.+-++..|..
T Consensus 120 eIk~~I~~-~a~~~~~Dv~iiEiGGTVGDIEs~pFlEAirQl~~~~G~~--n~~~IHvtlVP~l 180 (276)
T PF06418_consen 120 EIKERIRR-VAKKPEPDVVIIEIGGTVGDIESLPFLEAIRQLRNEVGRE--NVCFIHVTLVPYL 180 (276)
T ss_dssp HHHHHHHH-HHCCCT-SEEEEEEESETTSCCCHHHHHHHHHHHHHH-TT--CEEEEEEEE--EE
T ss_pred HHHHHHHH-hcCCCCCCEEEEecCCcccccccccHHHHHHHHHHHhCcC--cEEEEEEeeeeee
Confidence 44555554 2224589999999997643344566777777777766544 5545555555543
No 126
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=39.84 E-value=60 Score=24.15 Aligned_cols=37 Identities=8% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 90 KPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+|++|++....+.- ...+ +++.+++.+|.++++-.+.
T Consensus 1 ~p~lvi~f~s~~~~--------~~~~-i~~~l~~~~p~~~iiG~st 37 (198)
T PF08495_consen 1 RPDLVILFCSPEYD--------EEAK-ILEALRERLPDAPIIGCST 37 (198)
T ss_pred CCEEEEEEecchhh--------hhHH-HHHHHHHHCCCCcEEEEcc
Confidence 58888887765522 2223 8899999999998887765
No 127
>PLN02602 lactate dehydrogenase
Probab=39.10 E-value=87 Score=26.35 Aligned_cols=47 Identities=9% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCCcEEEEEeccCCCC-CCH-HHH---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-ENI---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~~~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|.---. .+- +.+ .+-++++.+.+++..|++.+++++.
T Consensus 104 ~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 104 AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4789999999875322 222 222 3457888999999999998888874
No 128
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=38.88 E-value=1.1e+02 Score=22.71 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=25.9
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 92 KVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 92 d~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..|+|.+|+|= .+-.+++++.++.+.+ +|+.+++..+.
T Consensus 8 ~~v~i~LGSNl-----g~~~~~l~~A~~~L~~-~~~~~~~~~S~ 45 (163)
T PRK14092 8 ALAYVGLGANL-----GDAAATLRSVLAELAA-APGILACKASR 45 (163)
T ss_pred CEEEEEecCch-----HhHHHHHHHHHHHHHh-CCCCeeEEECC
Confidence 46899999992 2334566777777766 67777665554
No 129
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=38.69 E-value=60 Score=26.01 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=44.1
Q ss_pred CcEEEEccchhcccCcc---hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEecc
Q psy1995 36 PELVFIGDSLISFLTQT---QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT 100 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~---~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ 100 (211)
.-|+++||-+-.|-.-. ..+.+.+ .++.+.-.-+-|+....+.+.+.. .. .++|+||+..|.
T Consensus 4 a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~-a~--~r~D~vI~tGGL 70 (255)
T COG1058 4 AEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALRE-AS--ERADVVITTGGL 70 (255)
T ss_pred EEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHH-HH--hCCCEEEECCCc
Confidence 35899999998885211 1122322 467888888899999999998875 33 459999998773
No 130
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=38.49 E-value=1.1e+02 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|+-... .+..+ -...+.++...+.+..|++.+++.+.
T Consensus 71 ~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 71 AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5789999999975432 23222 23456777888888889988877774
No 131
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=38.33 E-value=1.3e+02 Score=27.67 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=40.8
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-CCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE-DSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~-~~~~~ 109 (211)
....++++.||.-..+. ..+.+... ..++...+.-|..++.-..-++ ..+|+++|++.|.|+.. +..++
T Consensus 572 ~~~~~~L~tGD~~~~~E---~~l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~-----~v~P~~aiiS~g~~N~yghP~~~ 643 (662)
T TIGR00361 572 DGGNSWLLTGDLEAEGE---QEVMRVFPNIKADVLQVGHHGSKTSTSEELIQ-----QVQPKVAIISAGRNNRWHHPHQK 643 (662)
T ss_pred ECCeeEEEecCCCHHHH---HHHHhcccCcCccEEEeCCCCCCCCChHHHHH-----hcCCCEEEEECCCCCCCCCChHH
Confidence 35567888888844331 11112222 3457777777766544333332 46899999999986544 55444
Q ss_pred H
Q psy1995 110 I 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 644 v 644 (662)
T TIGR00361 644 V 644 (662)
T ss_pred H
Confidence 3
No 132
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=38.08 E-value=94 Score=25.08 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccCCCC-------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 89 IKPKVIVILVGTNNTE-------DSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
-.+|++++++|..--+ .+.++..+..+++.+.+++..|+.-++ .-.-|..
T Consensus 169 AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l-~hGGPI~ 225 (268)
T PF09370_consen 169 AGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVL-CHGGPIA 225 (268)
T ss_dssp HT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEE-EECTTB-
T ss_pred cCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEE-EeCCCCC
Confidence 4689999999987543 677888899999999999998888444 4444444
No 133
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=37.57 E-value=1e+02 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=34.5
Q ss_pred CCCcEEEEEe-----c-cCCCC----------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC
Q psy1995 89 IKPKVIVILV-----G-TNNTE----------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGK 140 (211)
Q Consensus 89 ~~pd~Vvi~~-----G-~ND~~----------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~ 140 (211)
..=|++||.. | +||+. .+++.-.+.+.++.+.+++..++ ++|++...|+..
T Consensus 114 ~~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~~~-~LiLiaLGPTAt 180 (225)
T PF08759_consen 114 KDRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYAKD-KLILIALGPTAT 180 (225)
T ss_pred CCCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhCCC-cEEEEecCCcch
Confidence 3456777752 2 46664 35667778899999999987544 677777766554
No 134
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=37.50 E-value=88 Score=24.14 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.+||+|++.+..-|.. -.++++.+++..|..+|++++..
T Consensus 48 ~~~DlvilD~~~p~~~---------G~eli~~l~~~~~~~~vI~ls~~ 86 (239)
T PRK10430 48 TPIDLILLDIYMQQEN---------GLDLLPVLHEAGCKSDVIVISSA 86 (239)
T ss_pred CCCCEEEEecCCCCCC---------cHHHHHHHHhhCCCCCEEEEECC
Confidence 5689999976554432 13467777777888999998763
No 135
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=37.27 E-value=63 Score=25.92 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcccc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI 179 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~ 179 (211)
.+.++++.+++. +. +|+.|.. ..++.+.+++.|++ .+++++|+...+.
T Consensus 41 ~~~~il~~i~~~--~~-iV~~Tlv------------~~~lr~~l~~~~~~----~~i~~~Dll~~~l 88 (255)
T PF03618_consen 41 QLDEILEEIKEE--NA-IVFYTLV------------DPELREYLEEFCRE----HGIPCVDLLGPLL 88 (255)
T ss_pred HHHHHHHHHhcc--CC-EEEEeCC------------CHHHHHHHHHHHHh----cCCCEEeccHHHH
Confidence 345566666663 22 6666652 36677789989998 8999999997754
No 136
>PLN00106 malate dehydrogenase
Probab=37.15 E-value=94 Score=25.81 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=34.6
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
...|+||+..|...-. .+..+ -...+.++.+.+++..|++.|++++. |+.
T Consensus 85 ~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN-PvD 139 (323)
T PLN00106 85 KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN-PVN 139 (323)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC-Ccc
Confidence 4689999999976442 23222 23467788889999999997776665 543
No 137
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=37.04 E-value=95 Score=25.23 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=32.7
Q ss_pred CCCcEEEEEeccCCCC-CC-H---HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS-A---ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~-~---~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|+.... .+ . .+-...+.++++.+.+..|+..+++.+.
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4679999999876443 22 1 2334566788888888888887777664
No 138
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.98 E-value=1.4e+02 Score=20.57 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=38.5
Q ss_pred CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCC-CCeEEEE
Q psy1995 60 EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQP-QADVVVL 133 (211)
Q Consensus 60 ~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p-~~~ii~~ 133 (211)
.++.+++.|.. .....+..... ..+||+|+|+.-. ......+.++++.+++..+ +..+++-
T Consensus 26 ~G~~vi~lG~~-vp~e~~~~~a~-----~~~~d~V~iS~~~-------~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 26 AGFEVIYTGLR-QTPEEIVEAAI-----QEDVDVIGLSSLS-------GGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred CCCEEEECCCC-CCHHHHHHHHH-----HcCCCEEEEcccc-------hhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 35667776655 33345545443 4799999996532 4456667889999999855 4444443
No 139
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.89 E-value=1.1e+02 Score=22.59 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|.++|.-|--| +..+++.+|+. +.+|++++.
T Consensus 104 ~~iD~~vLvSgD~D-----------F~~Lv~~lre~--G~~V~v~g~ 137 (160)
T TIGR00288 104 PNIDAVALVTRDAD-----------FLPVINKAKEN--GKETIVIGA 137 (160)
T ss_pred CCCCEEEEEeccHh-----------HHHHHHHHHHC--CCEEEEEeC
Confidence 57788888888777 57899999998 999999996
No 140
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.87 E-value=1.1e+02 Score=20.09 Aligned_cols=36 Identities=3% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
.++|+||+..+...-. .+..+-+.+++. +.++++..
T Consensus 47 ~~aD~VIv~t~~vsH~--------~~~~vk~~akk~--~ip~~~~~ 82 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHN--------AMWKVKKAAKKY--GIPIIYSR 82 (97)
T ss_pred CCCCEEEEEeCCcChH--------HHHHHHHHHHHc--CCcEEEEC
Confidence 5899999998877642 233344455555 67777654
No 141
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=36.39 E-value=74 Score=26.62 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=58.0
Q ss_pred EEEE--ccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-C-CH----HH
Q psy1995 38 LVFI--GDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE-D-SA----EN 109 (211)
Q Consensus 38 il~i--GDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~-~-~~----~~ 109 (211)
++.. ||.++..|.... .+...+.-+.-.|+.|..-+..+..+-. .+......+|+++.=+--.. + ++ ..
T Consensus 53 ~v~~pdg~~~~ldw~~~p--~~~~~P~vVl~HGL~G~s~s~y~r~L~~-~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G 129 (345)
T COG0429 53 RLETPDGGFIDLDWSEDP--RAAKKPLVVLFHGLEGSSNSPYARGLMR-ALSRRGWLVVVFHFRGCSGEANTSPRLYHSG 129 (345)
T ss_pred EEEcCCCCEEEEeeccCc--cccCCceEEEEeccCCCCcCHHHHHHHH-HHHhcCCeEEEEecccccCCcccCcceeccc
Confidence 4444 446666553310 1112234577889988877776666554 33345588888864322111 1 11 12
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..+++..+++.+++.+|..++..++.
T Consensus 130 ~t~D~~~~l~~l~~~~~~r~~~avG~ 155 (345)
T COG0429 130 ETEDIRFFLDWLKARFPPRPLYAVGF 155 (345)
T ss_pred chhHHHHHHHHHHHhCCCCceEEEEe
Confidence 34788999999999999999999886
No 142
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.26 E-value=71 Score=26.38 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
..+||++|+.+-.-+.. --+++++++...|..+||+++..
T Consensus 42 ~~kpDLifldI~mp~~n---------giefaeQvr~i~~~v~iifIssh 81 (361)
T COG3947 42 VFKPDLIFLDIVMPYMN---------GIEFAEQVRDIESAVPIIFISSH 81 (361)
T ss_pred hcCCCEEEEEeecCCcc---------HHHHHHHHHHhhccCcEEEEecc
Confidence 57999999866444332 24577888888899999999863
No 143
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=36.04 E-value=88 Score=24.68 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC---ccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 105 DSAENIADGILELIRLVQTKQPQADVVVLELLPRGK---LINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 105 ~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~---~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
.+.+++. +.++.++....+..+|++..+-.-. ........+..+...|+++|.+ .+++++=+...
T Consensus 112 ~~~~~i~----~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~----~~i~vi~~sQl 179 (259)
T PF03796_consen 112 LTIDDIE----SKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKE----LNIPVIALSQL 179 (259)
T ss_dssp -BHHHHH----HHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHH----HTSEEEEEEEB
T ss_pred CCHHHHH----HHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH----cCCeEEEcccc
Confidence 3455544 4556666665688899988643221 1122335688888899999998 89998866543
No 144
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=35.98 E-value=70 Score=24.41 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=38.3
Q ss_pred CCcEEEEccchhcccCc---chhHHhhcCCc----ceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 35 EPELVFIGDSLISFLTQ---TQIWHNLFEPL----HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~---~~~~~~~~~~~----~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
+.-|+.+||+++.|... +....+.+... ....+++-.+....+.+.+.+ .++..+.|+||...|+-
T Consensus 5 ~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~-a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 5 KIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIE-LVDEMGCDLVLTTGGTG 77 (193)
T ss_pred EEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHH-HhhcCCCCEEEECCCCC
Confidence 35688999999877521 11122222211 112346667777777777765 34335789999986654
No 145
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=35.97 E-value=21 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 86 LDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 86 ~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
+...+|++||+..|.--.. .+++.|....+.+.+...+.. . +++++.
T Consensus 236 ~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~-~-~~v~vl 290 (311)
T PF00850_consen 236 LEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHC-I-PVVSVL 290 (311)
T ss_dssp HHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHS-G-CEEEEE
T ss_pred hhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcC-C-cEEEEE
Confidence 3367999999999975322 566666655555554444432 2 555443
No 146
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=35.70 E-value=1.3e+02 Score=20.00 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhC-CCCeEEEEeccCCCC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQ-PQADVVVLELLPRGK 140 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~~~ 140 (211)
....|++|| |-+..+...-.+ ....|..+++.. |+.+|++.+..|...
T Consensus 34 ~e~AD~iii----NTC~V~~~Ae~k-~~~~i~~l~~~~~~~~~ivv~GC~aq~~ 82 (98)
T PF00919_consen 34 PEEADVIII----NTCTVRESAEQK-SRNRIRKLKKLKKPGAKIVVTGCMAQRY 82 (98)
T ss_pred cccCCEEEE----EcCCCCcHHHHH-HHHHHHHHHHhcCCCCEEEEEeCccccC
Confidence 357899988 334333333233 333444444444 899999999876544
No 147
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=35.70 E-value=1.2e+02 Score=22.17 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
...||+|++.....+.. -.++++.+++..|.++|++++..+
T Consensus 47 ~~~~dlvild~~l~~~~---------g~~~~~~l~~~~~~~~ii~ls~~~ 87 (210)
T PRK09935 47 TRPVDLIIMDIDLPGTD---------GFTFLKRIKQIQSTVKVLFLSSKS 87 (210)
T ss_pred hcCCCEEEEeCCCCCCC---------HHHHHHHHHHhCCCCcEEEEECCC
Confidence 35799999977655432 134667777777889999888643
No 148
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.62 E-value=95 Score=25.73 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=34.9
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
...|+||+..|..+-. .+-.+ -.+-++++...+++.. |++.+++++. |+
T Consensus 75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN-Pv 129 (323)
T cd00704 75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN-PA 129 (323)
T ss_pred CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC-cH
Confidence 4689999999986544 33332 3346788888899884 9998888874 54
No 149
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=35.54 E-value=47 Score=27.45 Aligned_cols=21 Identities=10% Similarity=0.271 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhCCCCeEEEEe
Q psy1995 114 ILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~ 134 (211)
..+.++.+|+.+|+++||+.+
T Consensus 22 t~~~l~siR~~~P~A~IILST 42 (311)
T PF07507_consen 22 TKNCLASIRKHFPGAEIILST 42 (311)
T ss_pred HHHHHHHHHHhCCCCEEEEEC
Confidence 456799999999999999976
No 150
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=35.21 E-value=1.6e+02 Score=22.75 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
+..||+|+...|.= . ..-.-..+..+++.+|+.+|=++++.
T Consensus 32 g~ePDVVlA~aGd~------p--T~E~lAA~~lLr~~~P~lkiRvVNVv 72 (203)
T PF09363_consen 32 GEEPDVVLACAGDV------P--TLEVLAAASLLREHFPELKIRVVNVV 72 (203)
T ss_dssp TTT-SEEEEEESHH------H--HHHHHHHHHHHHHT--T--EEEEEES
T ss_pred CCCCCEEEEecCch------h--hHHHHHHHHHHHHhccCceEEEEEEe
Confidence 67899999999853 1 11123357889999999999988874
No 151
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=35.14 E-value=1.7e+02 Score=21.52 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|.+++.+..+| .+.|...+...+..+++..|++++++++.
T Consensus 71 ~~a~~~ilvfdit~----~~Sf~~~~~~w~~~i~~~~~~~~iilVgn 113 (178)
T cd04131 71 PDSDAVLICFDISR----PETLDSVLKKWRGEIQEFCPNTKVLLVGC 113 (178)
T ss_pred CCCCEEEEEEECCC----hhhHHHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 36688888887665 34444434566777777778999998886
No 152
>PLN02629 powdery mildew resistance 5
Probab=34.81 E-value=21 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCeEEEEeccCCC
Q psy1995 108 ENIADGILELIRLVQTKQ--PQADVVVLELLPRG 139 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~--p~~~ii~~~~~p~~ 139 (211)
..|...++...+.+.+.- .+..+|+-+..|..
T Consensus 243 ~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~H 276 (387)
T PLN02629 243 VALEKALRTWAYWVDTNVDRSRTRVFFQSISPTH 276 (387)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEecCccc
Confidence 467777787777776532 35578888887754
No 153
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=34.72 E-value=1.6e+02 Score=21.94 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCcEEEEEeccCCCC---C--------------------C--HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 90 KPKVIVILVGTNNTE---D--------------------S--AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~---~--------------------~--~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.-++||+.+||+-.. . | ..--..++++.++.|++++|+.-||.+..
T Consensus 24 ~~~iv~lCIGTDRstGDsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~IIAIDA 94 (163)
T PF06866_consen 24 NREIVFLCIGTDRSTGDSLGPLVGTKLKEMGFPNFNVYGTLDEPVHALNLEETLNEIKKKHPNPFIIAIDA 94 (163)
T ss_pred CCCEEEEEECCCCCccccccchhhHHHHhcCCCCceEEECCCCCcchhhHHHHHHHHHHHCCCCeEEEEEC
Confidence 667899999998543 0 0 01123466666666666666666665543
No 154
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=34.59 E-value=1.8e+02 Score=21.55 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|.+++.+...|. +.|..-....++.+++..|++++++++.
T Consensus 75 ~~ad~~ilvyDit~~----~Sf~~~~~~w~~~i~~~~~~~piilVgN 117 (182)
T cd04172 75 PDSDAVLICFDISRP----ETLDSVLKKWKGEIQEFCPNTKMLLVGC 117 (182)
T ss_pred CCCCEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCCCEEEEeE
Confidence 467888888876553 4444444667777777778899998875
No 155
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=34.36 E-value=27 Score=23.01 Aligned_cols=25 Identities=8% Similarity=-0.054 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCeEEEe
Q psy1995 149 NLATNQILADKLSPAPLGPKVHLIQ 173 (211)
Q Consensus 149 ~~~~n~~l~~~~~~~~~~~~v~~iD 173 (211)
..-++.++++||.....|.+++||.
T Consensus 63 qEIl~dAlqQWA~~n~kY~DIPYIE 87 (91)
T PF15127_consen 63 QEILSDALQQWAENNIKYSDIPYIE 87 (91)
T ss_pred HHHHHHHHHHHHHhCccccCCCccc
Confidence 4567889999998644566666664
No 156
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=34.26 E-value=1.7e+02 Score=21.90 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|.+++.+...|. +.| ..+...++.+++..|++++++++.
T Consensus 77 ~~ad~illVfD~t~~----~Sf-~~~~~w~~~i~~~~~~~piilVGN 118 (189)
T cd04121 77 RGAQGIILVYDITNR----WSF-DGIDRWIKEIDEHAPGVPKILVGN 118 (189)
T ss_pred cCCCEEEEEEECcCH----HHH-HHHHHHHHHHHHhCCCCCEEEEEE
Confidence 477899998877763 222 233556677777778999999885
No 157
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=34.14 E-value=1.2e+02 Score=22.27 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...||+|++.....+.. -.+++..+++..|..+|++++..
T Consensus 40 ~~~~dlvl~d~~~~~~~---------g~~~~~~l~~~~~~~~iivls~~ 79 (218)
T TIGR01387 40 KDDYDLIILDVMLPGMD---------GWQILQTLRRSGKQTPVLFLTAR 79 (218)
T ss_pred cCCCCEEEEeCCCCCCC---------HHHHHHHHHccCCCCcEEEEEcC
Confidence 35689999977655532 23566777777788888888754
No 158
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=34.10 E-value=1.3e+02 Score=22.22 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=27.8
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
..||+|++.....+.. -..+++.+++..|..++++++..+
T Consensus 43 ~~~dlvild~~l~~~~---------g~~~~~~i~~~~~~~~ii~lt~~~ 82 (219)
T PRK10336 43 APYDAVILDLTLPGMD---------GRDILREWREKGQREPVLILTARD 82 (219)
T ss_pred CCCCEEEEECCCCCCC---------HHHHHHHHHhcCCCCcEEEEECCC
Confidence 5789999977654432 134666777777889999988643
No 159
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=33.84 E-value=2e+02 Score=24.26 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1995 108 ENIADGILELIRLVQTK 124 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~ 124 (211)
+++...+.++++.+++.
T Consensus 23 ~d~~~~f~~~l~~a~~~ 39 (390)
T COG0420 23 EDQKKAFDELLEIAKEE 39 (390)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34444444444444444
No 160
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.51 E-value=1.4e+02 Score=23.58 Aligned_cols=68 Identities=22% Similarity=0.442 Sum_probs=40.8
Q ss_pred EEeccCCchhHHHHHHhhcCCCCCCCCcEEEEE-----eccCCCC---CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec-
Q psy1995 65 LAFGIGGDKVEHCLWRVQDGILDSIKPKVIVIL-----VGTNNTE---DSAENIADGILELIRLVQTKQPQADVVVLEL- 135 (211)
Q Consensus 65 ~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~-----~G~ND~~---~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~- 135 (211)
+..|+.+....+-...++ .+..+.||.+|+. .|+--.. .++++. .++++.+|+.||+ +|. ++.
T Consensus 156 itiGL~~gki~~e~kaId--iL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~----i~v~~~AR~~f~~-pv~-iGCm 227 (275)
T COG1856 156 ITIGLDFGKIHGEFKAID--ILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEA----IKVVKYARKKFPN-PVS-IGCM 227 (275)
T ss_pred EEEEeccCcccchHHHHH--HHhcCCCCeEEEEEEecCCchhccCCCCcCHHHH----HHHHHHHHHhCCC-Cee-Eeec
Confidence 466777666666666665 4556889987764 3432222 333443 4578899999999 444 454
Q ss_pred cCCCC
Q psy1995 136 LPRGK 140 (211)
Q Consensus 136 ~p~~~ 140 (211)
-|..+
T Consensus 228 rP~Ge 232 (275)
T COG1856 228 RPRGE 232 (275)
T ss_pred CcCch
Confidence 34443
No 161
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=33.42 E-value=77 Score=25.62 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcccc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI 179 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~ 179 (211)
+.++++.+++ .-.+|+.|.. ..++.+.+++.|.. .+++++|+...+.
T Consensus 48 ~~~i~~~~~~---~~~iV~~Tlv------------~~elr~~l~~~~~~----~~i~~vdll~p~i 94 (269)
T PRK05339 48 ADEVLEEINA---ERPIVFYTLV------------DPELREILEERCAE----FGIPCIDILGPLI 94 (269)
T ss_pred HHHHHHHHHh---cCCEEEEeCC------------CHHHHHHHHHHHHH----cCCCEEeccHHHH
Confidence 4556666665 3336666652 35677788888998 9999999998764
No 162
>PRK05442 malate dehydrogenase; Provisional
Probab=33.03 E-value=1.8e+02 Score=24.23 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=33.8
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
.+.|+|||..|...-. .+..+ -.+-++++...+.+.. |++.+++++ .|+
T Consensus 79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPv 133 (326)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG-NPA 133 (326)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-Cch
Confidence 5789999999975433 33333 2356788888888866 688888777 454
No 163
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=32.44 E-value=1.1e+02 Score=24.43 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=5.4
Q ss_pred CCCcEEEEEec
Q psy1995 89 IKPKVIVILVG 99 (211)
Q Consensus 89 ~~pd~Vvi~~G 99 (211)
.+||+||+..-
T Consensus 44 l~PD~vv~lGD 54 (257)
T cd08163 44 LKPDSTIFLGD 54 (257)
T ss_pred cCCCEEEEecc
Confidence 34555555443
No 164
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=32.39 E-value=62 Score=24.51 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=31.9
Q ss_pred CCCCcE---EEEEeccCCCC--------------CCHHHHHHHHHHHHHHHHhhC-CCCeEEE
Q psy1995 88 SIKPKV---IVILVGTNNTE--------------DSAENIADGILELIRLVQTKQ-PQADVVV 132 (211)
Q Consensus 88 ~~~pd~---Vvi~~G~ND~~--------------~~~~~~~~~~~~~i~~i~~~~-p~~~ii~ 132 (211)
+.+|+. |+|..|||.-. .+-+++.+.+.++++.+++.+ |.+-|=+
T Consensus 104 GI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~Iqf 166 (182)
T PF00390_consen 104 GIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNALIQF 166 (182)
T ss_dssp S-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSEEEE
T ss_pred CcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeEEEE
Confidence 455543 77899998521 456789999999999999999 7775544
No 165
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=32.17 E-value=60 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=29.8
Q ss_pred EEEeccCCCC------------------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 95 VILVGTNNTE------------------DSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 95 vi~~G~ND~~------------------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
++++|+||+. ..-+.+.+.+..+++.+++. +.++-+++-.
T Consensus 448 f~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~--g~~v~vCGe~ 505 (575)
T PRK11177 448 FFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAE--GKWTGMCGEL 505 (575)
T ss_pred EEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhc--CCeEEEeCCC
Confidence 5889999975 11245777888888888887 8888877754
No 166
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=32.01 E-value=1.9e+02 Score=20.57 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=25.5
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
.++++.+||.+-.|.-+ +........+++.+.+++.+|+.+|++..
T Consensus 49 ~~~i~~iVvGlP~~~~G-~~~~~~~~v~~f~~~L~~~~~~ipV~~~D 94 (135)
T PF03652_consen 49 EYQIDGIVVGLPLNMDG-SESEQARRVRKFAEELKKRFPGIPVILVD 94 (135)
T ss_dssp HCCECEEEEEEEBBCTS-SC-CCHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred HhCCCEEEEeCCcccCC-CccHHHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 46777777777766543 11122333455666666666677776665
No 167
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=31.95 E-value=1.2e+02 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.518 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 112 DGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
.++.+.++.|++++|+.-||.+.
T Consensus 47 ~NL~e~l~~I~~~~~~~~iIAID 69 (140)
T TIGR02841 47 KNLEEKLKIIKKKHPNPFIIAID 69 (140)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEE
Confidence 35555666666666655555544
No 168
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=31.76 E-value=1.9e+02 Score=20.60 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCC-CCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 114 ILELIRLVQTKQPQADVVVLELLPR-GKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~p~-~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
+..+.+.+++. +...|+++.|-. ..........+..|-+.|++.. . -.+.++|-.
T Consensus 43 ~~~l~~~i~~~--~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~-~----~~v~~~DEr 98 (138)
T PRK00109 43 WDRLEKLIKEW--QPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRF-G----LPVVLVDER 98 (138)
T ss_pred HHHHHHHHHHh--CCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHh-C----CCEEEEcCC
Confidence 44555555555 445555654321 2222223334555555555443 2 355665543
No 169
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=31.44 E-value=71 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCCc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGKL 141 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~ 141 (211)
+-+..+|+.+++..|++.|.+++-.|....
T Consensus 18 Ail~~ii~~l~~~~p~~~i~v~S~~P~~t~ 47 (426)
T PRK10017 18 AILRGLLDAINILNPHAEVDVMSRYPVSSS 47 (426)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCccchh
Confidence 446779999999999999999999887643
No 170
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=31.26 E-value=1.4e+02 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
...||+|++.+..-+.. -.++++.+++..|.+++++++...
T Consensus 45 ~~~~dlvl~d~~~~~~~---------g~~~~~~l~~~~~~~~ii~ls~~~ 85 (228)
T PRK11083 45 QQPPDLVILDVGLPDIS---------GFELCRQLLAFHPALPVIFLTARS 85 (228)
T ss_pred cCCCCEEEEeCCCCCCC---------HHHHHHHHHhhCCCCCEEEEEcCC
Confidence 35789999876554432 135667777777899999988543
No 171
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.18 E-value=1.6e+02 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccCCCC-CC---HHHH---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS---AENI---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~---~~~~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|..--. .+ .+.+ .+-+++++..+.+..|++.+++++.
T Consensus 67 ~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 67 ADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5789999999975322 33 3333 3467888899999999998777765
No 172
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=31.04 E-value=44 Score=20.71 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=12.3
Q ss_pred hcCCCcEEEEccchhcc
Q psy1995 32 KESEPELVFIGDSLISF 48 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g 48 (211)
...+.++++||||+...
T Consensus 18 ~~~~~~~~~VGD~~~~D 34 (75)
T PF13242_consen 18 GVDPSRCVMVGDSLETD 34 (75)
T ss_dssp TSGGGGEEEEESSTTTH
T ss_pred CCCHHHEEEEcCCcHhH
Confidence 34567899999995443
No 173
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.64 E-value=2.5e+02 Score=23.55 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=39.6
Q ss_pred EEEEEeccCCCC--CC-------------------HHHHHH-HHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHH
Q psy1995 93 VIVILVGTNNTE--DS-------------------AENIAD-GILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNL 150 (211)
Q Consensus 93 ~Vvi~~G~ND~~--~~-------------------~~~~~~-~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~ 150 (211)
.|++.+|+|-.+ .| .++|++ +++++-...++. +++||-- +...-| ..-
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~--gv~vI~~---~~G~Dp-----AaV 209 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL--GVPVISG---KEGADP-----AAV 209 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh--CCeEEcc---CCCCCc-----HHH
Confidence 788899999987 11 345544 344444444444 6655532 111111 123
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEeCCccc
Q psy1995 151 ATNQILADKLSPAPLGPKVHLIQHNKDE 178 (211)
Q Consensus 151 ~~n~~l~~~~~~~~~~~~v~~iD~~~~~ 178 (211)
.|.+.-...++. ..+.++|....+
T Consensus 210 afDAi~~Akar~----~DvvliDTAGRL 233 (340)
T COG0552 210 AFDAIQAAKARG----IDVVLIDTAGRL 233 (340)
T ss_pred HHHHHHHHHHcC----CCEEEEeCcccc
Confidence 444444445555 788888887655
No 174
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=30.60 E-value=82 Score=23.39 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=39.5
Q ss_pred CcEEEEccchhcccCcc---hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 36 PELVFIGDSLISFLTQT---QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~---~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
..|+.+||.+..|-... ....+.+ .+..+....+-++....+.+.+.. .. ...|+||+..|+=
T Consensus 2 v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~-~~--~~~dlVIttGG~G 69 (170)
T cd00885 2 AEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRR-AS--ERADLVITTGGLG 69 (170)
T ss_pred EEEEEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH-HH--hCCCEEEECCCCC
Confidence 35889999998774211 1122222 245666677778887777777764 33 3678998886643
No 175
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=30.15 E-value=1e+02 Score=27.16 Aligned_cols=57 Identities=16% Similarity=0.420 Sum_probs=39.2
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEE---eccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVIL---VGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~---~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
+..++..+-+|.-... .++ ..+||+|+-- -|.|. -++++.+++..|++++|++|..-
T Consensus 27 g~eiVgtA~NG~eAle---li~-----e~~pDiviTDI~MP~mdG------------LdLI~~ike~~p~~~~IILSGy~ 86 (475)
T COG4753 27 GIEVVGTAANGKEALE---LIQ-----ETQPDIVITDINMPGMDG------------LDLIKAIKEQSPDTEFIILSGYD 86 (475)
T ss_pred CCeEEEecccHHHHHH---HHH-----hcCCCEEEEecCCCCCcH------------HHHHHHHHHhCCCceEEEEeccc
Confidence 4567777666644333 222 4789999872 33333 34899999999999999999753
No 176
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.04 E-value=2.1e+02 Score=23.69 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHH-HH---HHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN-IA---DGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~-~~---~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
...|+||+..|.-... .+..+ +. .-++++...+.+.. |++.+++++. |+
T Consensus 77 ~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN-Pv 131 (325)
T cd01336 77 KDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN-PA 131 (325)
T ss_pred CCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC-cH
Confidence 4789999999986553 33333 32 34567778888884 7888888774 54
No 177
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=30.02 E-value=61 Score=29.11 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=26.7
Q ss_pred EEEeccCCCC-C-----------------CHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 95 VILVGTNNTE-D-----------------SAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 95 vi~~G~ND~~-~-----------------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
|+++||||+. + -...+.+-+...++..++. +..|=+++-
T Consensus 449 FfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~--gkwvgmCGE 505 (574)
T COG1080 449 FFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRH--GKWVGMCGE 505 (574)
T ss_pred EeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHc--CCeeeechh
Confidence 7899999975 1 1235666677777777776 776666553
No 178
>PF06215 ISAV_HA: Infectious salmon anaemia virus haemagglutinin; InterPro: IPR010408 This entry represents the haemagglutinin-esterase fusion glycoprotein (HEF) found specifically in infectious anaemia virus (ISAV), an orthomyxovirus-type virus that is an important fish pathogen in marine aquaculture [, ]. Other viruses, such as influenza C virus, coronaviruses and toroviruses, also contain surface HEF proteins, but whereas they usually bind 9-O-acetylsialic acid receptors, ISAV HEF appears to bind 4-O- acetylsialic acid receptors []. Haemagglutinin-esterase fusion glycoprotein is a multi-functional protein embedded in the viral envelope of ISAV. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion. The serine esterase region of HEF is responsible for the destruction of the receptor, though it appears to be distinct from the esterase domain found in influenza C virus. Haemagglutinin-esterase glycoproteins must usually be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) necessary for the virus to be infectious. The cleaved HEF protein can then fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].
Probab=29.96 E-value=73 Score=25.94 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCCcEEEEccchhcccCcchhHH-hhcCCcceEEeccCCc-hhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWH-NLFEPLHCLAFGIGGD-KVEHCLWRVQDGILDSIKPKVIVILVGTNNTE 104 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~-~~~~~~~~~n~g~~G~-~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~ 104 (211)
..+..-.+|||-+...+-. .|. ++...+.-.-+..+|. -...+.-++..... ......=|+.+|+||+.
T Consensus 22 N~PdT~W~GD~rS~~~~vn-~~sldlvt~~~G~~~~KN~~GL~K~~sG~~P~~~~-~~~~~~ri~Y~Gt~DC~ 92 (391)
T PF06215_consen 22 NQPDTTWLGDSRSDQSRVN-AQSLDLVTAFKGELQAKNGNGLAKQMSGRFPSDWY-APTTKYRILYAGTNDCT 92 (391)
T ss_pred cCCCccccccccccccccC-hhhhhhhhhhcceEEeccCCchHHHhcCCCCCccc-CCCCceEEEEeecCcCc
Confidence 4456678999988654321 121 2222222222222222 22333334433222 34446778888999987
No 179
>KOG0541|consensus
Probab=29.89 E-value=72 Score=23.62 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=30.4
Q ss_pred hHHhhcCCcceEEeccCCchhHH--------HHHHhhcCCCCCCCCcEEEEEeccCCCC
Q psy1995 54 IWHNLFEPLHCLAFGIGGDKVEH--------CLWRVQDGILDSIKPKVIVILVGTNNTE 104 (211)
Q Consensus 54 ~~~~~~~~~~~~n~g~~G~~~~~--------~~~~~~~~~~~~~~pd~Vvi~~G~ND~~ 104 (211)
.|..++.+..++-+|++|+-+.. ..+..+ .+.....|.| +.+..||-.
T Consensus 36 ~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~--elksKGVd~i-icvSVnDpF 91 (171)
T KOG0541|consen 36 NVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKAD--ELKSKGVDEI-ICVSVNDPF 91 (171)
T ss_pred EhHHhcCCceEEEEcCCCccCCccccccCchHHHHHH--HHHhcCCcEE-EEEecCcHH
Confidence 46678888899999999985543 333333 3333445554 447788864
No 180
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=29.81 E-value=2e+02 Score=20.18 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCC-CCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQP-QADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p-~~~ii~~~~ 135 (211)
.+.|.+|+.+..|| ++-...+...+..++...+ +.++++++.
T Consensus 70 ~~~~~~ii~fd~~~-----~~S~~~~~~~~~~i~~~~~~~~~iivvg~ 112 (162)
T PF00071_consen 70 RNSDAIIIVFDVTD-----EESFENLKKWLEEIQKYKPEDIPIIVVGN 112 (162)
T ss_dssp TTESEEEEEEETTB-----HHHHHTHHHHHHHHHHHSTTTSEEEEEEE
T ss_pred cccccccccccccc-----cccccccccccccccccccccccceeeec
Confidence 46788999888776 3445556688888888877 688888875
No 181
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=29.78 E-value=1.3e+02 Score=24.93 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
.+.|+||+..|...-. .+..+ -.+-++++...+.+.. |++.+++.+. |+
T Consensus 74 ~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN-Pv 128 (324)
T TIGR01758 74 TDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN-PA 128 (324)
T ss_pred CCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC-cH
Confidence 5789999999986443 22222 2345778888888884 8898888774 44
No 182
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=29.73 E-value=1.6e+02 Score=20.86 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhCCCCe
Q psy1995 88 SIKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQPQAD 129 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~p~~~ 129 (211)
+.+-+.|-..++++|+- ...+++...+.+.|...-+++|..-
T Consensus 81 G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rsl 124 (127)
T PF06309_consen 81 GMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSL 124 (127)
T ss_pred ccCCCceeeecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCe
Confidence 56778888999999987 5567888888888888777777753
No 183
>KOG3662|consensus
Probab=29.68 E-value=3.7e+02 Score=23.26 Aligned_cols=119 Identities=13% Similarity=0.276 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHHhhcCCCcEEEEccchhcc-cCcchhHHhh-------cCC---cceE------EeccCCchhHHHHHH
Q psy1995 18 NRWYNQHEHQLQLAKESEPELVFIGDSLISF-LTQTQIWHNL-------FEP---LHCL------AFGIGGDKVEHCLWR 80 (211)
Q Consensus 18 ~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g-~~~~~~~~~~-------~~~---~~~~------n~g~~G~~~~~~~~~ 80 (211)
.+|+=++....++-.-++-.++|+||=+-.| |.+.+.|.+. |+. ..++ ..|.+-.......+|
T Consensus 77 ~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~R 156 (410)
T KOG3662|consen 77 NDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDR 156 (410)
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHH
Confidence 4565566555566667888999999988866 3344455432 321 1111 223333334445566
Q ss_pred hhcCCCC--CC---CCcEEEEEeccCCCC-CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 81 VQDGILD--SI---KPKVIVILVGTNNTE-DSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 81 ~~~~~~~--~~---~pd~Vvi~~G~ND~~-~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
+.+ .+. .- --.+=+++++.|-.. .....+......++..+....-+.+.+..+-.|
T Consensus 157 fe~-~fg~~~r~f~v~~~tf~~~d~~~ls~~~~~~~~~~~~~fl~~~~~~~~~~~r~~~~h~p 218 (410)
T KOG3662|consen 157 FES-VFGPTERRFDVGNLTFVMFDSNALSGNPDINVLSEARDFLNSVSTSGDGYPRILLAHDP 218 (410)
T ss_pred HHH-hhcchhhhhccCCceeEEeeehhhcCCCchhhhhhhhhhhcccccCCCCcceeeecccc
Confidence 553 222 11 113445667777777 444456777777777777655446666666544
No 184
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=29.60 E-value=1.6e+02 Score=21.91 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
...||+|++.....+.. -.++++.+++..|..++++++..+
T Consensus 42 ~~~~dlvild~~l~~~~---------g~~l~~~lr~~~~~~pii~ls~~~ 82 (223)
T PRK10816 42 EHLPDIAIVDLGLPDED---------GLSLIRRWRSNDVSLPILVLTARE 82 (223)
T ss_pred hCCCCEEEEECCCCCCC---------HHHHHHHHHhcCCCCCEEEEEcCC
Confidence 35789999976555432 234667777777888999887643
No 185
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=29.44 E-value=1.3e+02 Score=20.61 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=34.0
Q ss_pred hhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 73 KVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
++.+.+.-+.. ......|||... .+-.....++++.+++++.+.+|++++-
T Consensus 25 ~~dd~~~~i~~----~~~i~avvi~~d--------~~~~~~~~~ll~~i~~~~~~iPVFl~~~ 75 (115)
T PF03709_consen 25 STDDALAIIES----FTDIAAVVISWD--------GEEEDEAQELLDKIRERNFGIPVFLLAE 75 (115)
T ss_dssp SHHHHHHHHHC----TTTEEEEEEECH--------HHHHHHHHHHHHHHHHHSTT-EEEEEES
T ss_pred ChHHHHHHHHh----CCCeeEEEEEcc--------cccchhHHHHHHHHHHhCCCCCEEEEec
Confidence 34444444432 345566777654 3444556889999999999999999986
No 186
>KOG1532|consensus
Probab=29.30 E-value=2.1e+02 Score=23.60 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=6.7
Q ss_pred cCCCcEEEEc
Q psy1995 33 ESEPELVFIG 42 (211)
Q Consensus 33 ~~~~~il~iG 42 (211)
..++-|+++|
T Consensus 17 ~~p~~ilVvG 26 (366)
T KOG1532|consen 17 QRPVIILVVG 26 (366)
T ss_pred cCCcEEEEEe
Confidence 4556677777
No 187
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=29.22 E-value=1e+02 Score=26.60 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 105 DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 105 ~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+|+++..++.++++.-++++...++++++.
T Consensus 303 rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGy 333 (456)
T COG3946 303 RTPEQIAADLSRLIRFYARRWGAKRVLLIGY 333 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCcceEEEEee
Confidence 6899999999999999999999999999986
No 188
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH). The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
Probab=29.20 E-value=90 Score=22.96 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=39.7
Q ss_pred EEeccCCchhHHH---HHHhhcCCCCCCCCcEEEEEe-ccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 65 LAFGIGGDKVEHC---LWRVQDGILDSIKPKVIVILV-GTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 65 ~n~g~~G~~~~~~---~~~~~~~~~~~~~pd~Vvi~~-G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...|.+|..-..+ ..++.. ....++||+||-.- |+++-....+...+.+..+...++..+|++++-|+..-
T Consensus 30 ntlgASG~~eg~I~R~s~rFk~-Lv~N~N~dIiFkDEE~tgadR~MTkRckdkL~~La~~V~nqwpgvkLrV~eaW 104 (160)
T PF01085_consen 30 NTLGASGPSEGRITRNSPRFKE-LVPNYNPDIIFKDEEGTGADRLMTKRCKDKLNTLAISVMNQWPGVKLRVTEAW 104 (160)
T ss_dssp TSTTTT--------TTSGGGGG--EE---TTEEE--TTSSSGGGEE-HHHHHHHHHHHHHHHHHSTT--EEEEESS
T ss_pred cccCCcCccCCcccCCCccccc-CeecCCCceEeeccccCCCcccchHHHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 3455555433222 234444 33479999999854 55444455778889999999999999999999888763
No 189
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=29.11 E-value=2.7e+02 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+..+++.+.+.+++..|+++||+++.
T Consensus 158 v~~dlevm~~da~~~np~~~ii~~n~ 183 (202)
T COG0378 158 VGADLEVMARDAKEVNPEAPIIFTNL 183 (202)
T ss_pred hCccHHHHHHHHHHhCCCCCEEEEeC
Confidence 44577889999999999999998876
No 190
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=28.89 E-value=98 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 109 NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.=..++.++|+...+++|+.+|++++.
T Consensus 62 ~G~~~~~~~i~~~~~~CP~~kivl~GY 88 (179)
T PF01083_consen 62 AGVANLVRLIEEYAARCPNTKIVLAGY 88 (179)
T ss_dssp HHHHHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 334566777777778999999999986
No 191
>PRK06223 malate dehydrogenase; Reviewed
Probab=28.72 E-value=1.3e+02 Score=24.44 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCCcEEEEEeccCCCC-CC-HH---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS-AE---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~-~~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|.-... .+ .+ +-..-+.++++.+.+..|++.+++.+.
T Consensus 69 ~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 69 AGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4679999998865422 11 12 334566778888888888887776654
No 192
>KOG1495|consensus
Probab=28.58 E-value=1.4e+02 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCCCcEEEEEeccCCCC-----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 88 SIKPKVIVILVGTNNTE-----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~-----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..+-++|||..|.+-.. .-.+.-.+-+..++-.+-+..|++.+++.+.
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSN 138 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSN 138 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 34568999999998763 1133445567778888888899998888875
No 193
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=28.56 E-value=2.6e+02 Score=23.18 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=33.3
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|..=-- .+-.+. .+-+.++...+.+..|++.+++++.
T Consensus 68 ~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 68 KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 5689999999887443 333332 3456777888888889888887775
No 194
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=28.20 E-value=1.3e+02 Score=24.89 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCcEEEEEeccC------CCCCCHH----HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTN------NTEDSAE----NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~N------D~~~~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|.. |...+.. +-.+-+.++.+.+.+..|++.+++.+.
T Consensus 73 ~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4678999988763 2221222 233457888889999999987776664
No 195
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.10 E-value=3.1e+02 Score=23.50 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 87 DSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 87 ~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..++|++|+|.-. ..++.+-.++..+++.++++ .+.+|+.+..
T Consensus 81 ~~~~P~~I~V~tT-----C~se~IGDDi~~v~~~~~~~-~~~pVi~v~t 123 (407)
T TIGR01279 81 RDRNPSVIFLLSS-----CTPEVIKMDLEGLAERLSTN-FGVPVLFAPA 123 (407)
T ss_pred hhcCCCEEEEECC-----chHHHHHhhHHHHHHHHHHh-hCCCEEEeeC
Confidence 3567777776421 34566666677777776654 3556665544
No 196
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.03 E-value=2.9e+02 Score=23.99 Aligned_cols=113 Identities=17% Similarity=0.078 Sum_probs=54.5
Q ss_pred CCCcEEEEccchhcccCcchhHHhh----cC-CcceEEec---cCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCC
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNL----FE-PLHCLAFG---IGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTED 105 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~----~~-~~~~~n~g---~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~ 105 (211)
.+.+|+++|-|-..+-.+...+..+ |. ....+|.. +.|.. ....+. .+ ...+|+++|....
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~---~~~sl~--~l-p~~~Dlavi~vp~----- 74 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVK---AYPSVL--EI-PDPVDLAVIVVPA----- 74 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCcc---ccCCHH--HC-CCCCCEEEEecCH-----
Confidence 4567999999976553222222222 21 11222322 12221 112222 22 3578999987642
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCeEE-EEe-ccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 106 SAENIADGILELIRLVQTKQPQADVV-VLE-LLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 106 ~~~~~~~~~~~~i~~i~~~~p~~~ii-~~~-~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
+. ...+++.+.+. +++-+ +++ .++..... -....+.+.+.|++ .++.++-.+
T Consensus 75 --~~----~~~~l~e~~~~--gv~~~vi~s~gf~e~g~~------g~~~~~~l~~~a~~----~girvlGPn 128 (447)
T TIGR02717 75 --KY----VPQVVEECGEK--GVKGAVVITAGFKEVGEE------GAELEQELVEIARK----YGMRLLGPN 128 (447)
T ss_pred --HH----HHHHHHHHHhc--CCCEEEEECCCccccCcc------hHHHHHHHHHHHHH----cCCEEEecC
Confidence 22 34456666655 44433 333 23222111 12344567777877 788776544
No 197
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=27.88 E-value=2.3e+02 Score=21.65 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=4.6
Q ss_pred CCCcEEEEEe
Q psy1995 89 IKPKVIVILV 98 (211)
Q Consensus 89 ~~pd~Vvi~~ 98 (211)
.+||.||+..
T Consensus 41 l~PD~Vi~lG 50 (195)
T cd08166 41 VQPDIVIFLG 50 (195)
T ss_pred cCCCEEEEec
Confidence 3455554443
No 198
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=27.64 E-value=1.9e+02 Score=23.22 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 76 HCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 76 ~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
.+.+++.+ .....++|++|+.+|+-=-.....-|.++++++-..+-+. ++-.+=++..|.
T Consensus 119 eIk~~i~~-~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~--n~~~ihvt~vp~ 178 (255)
T cd03113 119 EIKERIRR-VAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRE--NVLFIHVTLVPY 178 (255)
T ss_pred HHHHHHHH-hhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcC--cEEEEEEeeeee
Confidence 34445543 2224689999999997632233445667766666655443 444444444453
No 199
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=27.49 E-value=4.1e+02 Score=23.01 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCCcEEEEEeccCCCC-CCHHHHHHHHHHHHHHHHhhCCCCeEEE-EeccCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENIADGILELIRLVQTKQPQADVVV-LELLPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~~~~~~~~i~~i~~~~p~~~ii~-~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
...|++||..||+--. ...+ .+.+...++.+.+..++..+++ =+..|+.. ...+.+.+......
T Consensus 75 ~~adv~fIavgTP~~~dg~aD--l~~V~ava~~i~~~~~~~~vvV~KSTVPvGt--------~~~v~~~i~~~~~~ 140 (414)
T COG1004 75 KDADVVFIAVGTPPDEDGSAD--LSYVEAVAKDIGEILDGKAVVVIKSTVPVGT--------TEEVRAKIREENSG 140 (414)
T ss_pred hcCCEEEEEcCCCCCCCCCcc--HHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc--------hHHHHHHHHhhccc
Confidence 3679999999999543 2221 1223334444444445534444 44455554 24555556665554
No 200
>KOG2495|consensus
Probab=27.29 E-value=3.4e+02 Score=23.82 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=46.0
Q ss_pred CCCCcEEEEEeccCCCC-C---------------CHHHHHHHHHHHHHHHHh-------hCCCCeEEEEeccCCCCccch
Q psy1995 88 SIKPKVIVILVGTNNTE-D---------------SAENIADGILELIRLVQT-------KQPQADVVVLELLPRGKLINK 144 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~-~---------------~~~~~~~~~~~~i~~i~~-------~~p~~~ii~~~~~p~~~~~~~ 144 (211)
...+|++|+..|.++.. . .+++++..+...+++... +---..+++++..|....-.
T Consensus 156 ~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA- 234 (491)
T KOG2495|consen 156 VIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA- 234 (491)
T ss_pred eecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh-
Confidence 36789999999999865 1 233444444444444322 10145788888888774321
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCc
Q psy1995 145 LWTKNLATNQILADKLSPAPLGPKVHLIQHNK 176 (211)
Q Consensus 145 ~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~ 176 (211)
.+..+-+++-++++..+....-.++++...+
T Consensus 235 -aEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 235 -AELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred -HHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 1223333444444443322234555554443
No 201
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=27.20 E-value=2.6e+02 Score=21.61 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|.+++.+-..|. +.|..........++...|++++++++.
T Consensus 71 ~~~d~illvfdis~~----~Sf~~i~~~w~~~~~~~~~~~piiLVgn 113 (222)
T cd04173 71 PDSDAVLICFDISRP----ETLDSVLKKWQGETQEFCPNAKVVLVGC 113 (222)
T ss_pred cCCCEEEEEEECCCH----HHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 477889998877663 4444444455566677778999999885
No 202
>PHA02542 41 41 helicase; Provisional
Probab=27.11 E-value=2e+02 Score=25.33 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=37.5
Q ss_pred HHHHHHHHhhCC-CCeEEEEeccCCCCcc------chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 115 LELIRLVQTKQP-QADVVVLELLPRGKLI------NKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 115 ~~~i~~i~~~~p-~~~ii~~~~~p~~~~~------~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
+..++.++.+.+ +..+|++..+.....+ ......+..+.+.|+.+|++ .+|++|=+...
T Consensus 288 r~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAke----l~vpVi~lsQL 353 (473)
T PHA02542 288 RALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVE----HDVVVWTAAQT 353 (473)
T ss_pred HHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHH----hCCeEEEEEee
Confidence 334444444322 3778888876544211 11234588899999999998 89998866543
No 203
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=26.97 E-value=1e+02 Score=27.88 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=28.8
Q ss_pred EEEeccCCCCC------------------CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 95 VILVGTNNTED------------------SAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 95 vi~~G~ND~~~------------------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
++++|+||+.. .-+.+.+.+..+++.+++. +.++-+.+...
T Consensus 447 f~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~--g~~v~vCGe~a 505 (565)
T TIGR01417 447 FFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAE--GIWVGMCGEMA 505 (565)
T ss_pred EEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHc--CCeEEEeCCcC
Confidence 58899999751 1235667788888888877 77777755443
No 204
>KOG1342|consensus
Probab=26.90 E-value=92 Score=26.56 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=36.5
Q ss_pred CCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 85 ILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 85 ~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+++.++|..||+..|.--+. ..-.-..+...+.++.+++- +.++++++.
T Consensus 247 v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksf--n~pllvlGG 299 (425)
T KOG1342|consen 247 VMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSF--NLPLLVLGG 299 (425)
T ss_pred HHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHc--CCcEEEecC
Confidence 55579999999999988665 22223345677888888887 788888875
No 205
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=26.65 E-value=1.2e+02 Score=18.69 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc-chhhHHHHHHHHHHHHHhC
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLI-NKLWTKNLATNQILADKLS 161 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~-~~~~~~~~~~n~~l~~~~~ 161 (211)
+.+--.+|.++|+..||++.|.+=......-.. ...++.-..+++.+++.-.
T Consensus 6 ~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe~we 58 (65)
T PF06183_consen 6 LEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDDKERIEEILQEMWE 58 (65)
T ss_dssp HHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchHHHHHHHHHHHHHh
Confidence 444557889999999999987764332111111 1112235666777776543
No 206
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=26.51 E-value=2.4e+02 Score=20.06 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.|.+|+.+-.+| .+.+.......+..+++..|+.++++++.
T Consensus 68 ~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~n 110 (174)
T smart00174 68 PDTDVFLICFSVDS----PASFENVKEKWYPEVKHFCPNTPIILVGT 110 (174)
T ss_pred CCCCEEEEEEECCC----HHHHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 36788888887665 34444433456777777778999998875
No 207
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=26.17 E-value=2.4e+02 Score=21.67 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=28.9
Q ss_pred CCeEEEEeccCCCCcc---chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 127 QADVVVLELLPRGKLI---NKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 127 ~~~ii~~~~~p~~~~~---~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
++++|++..+-.-... ......+..+...|+++|++ .+++++=+.
T Consensus 123 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~----~~~~ii~~~ 170 (242)
T cd00984 123 GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKE----LNVPVIALS 170 (242)
T ss_pred CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHH----hCCeEEEec
Confidence 7888888875432211 11234567778889998887 777776444
No 208
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.98 E-value=1.7e+02 Score=23.97 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccCCCC-CCH----HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA----ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~----~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..... .+. ..-.+.++++++.+++..|+..+++.+.
T Consensus 66 ~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 66 KGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred CCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4678999999986432 222 2234567888889999989988877754
No 209
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=25.80 E-value=2.3e+02 Score=19.61 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 105 DSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 105 ~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
.+++++..++-..++.+-+. ++++|++..+|..
T Consensus 78 ~d~~~~A~~Lf~~LR~~D~~--~~~~I~ie~~~~~ 110 (125)
T PF03481_consen 78 GDPEEAARNLFAALRELDEL--GVDLILIEGPPET 110 (125)
T ss_dssp TSHHHHHHHHHHHHHHHHHT--T-SEEEEEEESGC
T ss_pred CCHHHHHHHHHHHHHHHhhc--CCCEEEEeeCCCc
Confidence 45788999999999998887 8888888887744
No 210
>PTZ00117 malate dehydrogenase; Provisional
Probab=25.69 E-value=1.9e+02 Score=23.82 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCCcEEEEEeccCCCC-CCH-HHHH---HHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-ENIA---DGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~~~~---~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|.-... .+. +.+. .-+.++.+.+.+.+|++.+++++.
T Consensus 72 ~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 72 KDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4679999998764332 222 2222 456788899999999997777654
No 211
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=25.51 E-value=64 Score=26.03 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=29.6
Q ss_pred CcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeE
Q psy1995 91 PKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADV 130 (211)
Q Consensus 91 pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~i 130 (211)
|.+-.|.+|.||+. ..-+++.+.++++++.+++. +..+
T Consensus 168 ~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~--Gk~~ 213 (267)
T PRK10128 168 EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAA--GKAA 213 (267)
T ss_pred CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHc--CCeE
Confidence 56778889999975 33467889999999999988 5543
No 212
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=25.30 E-value=1.9e+02 Score=21.80 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...||+|++.....+.. -.+++..+++..+..+|++++..
T Consensus 47 ~~~~dlvild~~l~~~~---------g~~~~~~lr~~~~~~pii~ls~~ 86 (239)
T PRK09468 47 RESFHLMVLDLMLPGED---------GLSICRRLRSQNNPTPIIMLTAK 86 (239)
T ss_pred cCCCCEEEEeCCCCCCC---------HHHHHHHHHhcCCCCCEEEEECC
Confidence 46799999976554432 23466677777778899998764
No 213
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.28 E-value=2.8e+02 Score=24.25 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
.+.++.++..++.++|.++|++....-
T Consensus 146 gAairDIl~~~~rR~P~~~viv~pt~V 172 (440)
T COG1570 146 GAALRDILHTLSRRFPSVEVIVYPTLV 172 (440)
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEeccc
Confidence 356888999999999999999876643
No 214
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=25.23 E-value=2.3e+02 Score=19.99 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
......+..-++..++. +...|++.+.
T Consensus 17 ~~~~~R~~~a~~l~~~~-~~~~ii~sGg 43 (150)
T cd06259 17 PILAERLDAAAELYRAG-PAPKLIVSGG 43 (150)
T ss_pred hHHHHHHHHHHHHHHhC-CCCEEEEcCC
Confidence 55555556666665554 2334444333
No 215
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=25.14 E-value=2.2e+02 Score=20.69 Aligned_cols=40 Identities=13% Similarity=0.355 Sum_probs=26.7
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...||+|++....-+.. -.+++..+++..|..++++++..
T Consensus 43 ~~~~dlvi~d~~~~~~~---------g~~~~~~l~~~~~~~~ii~ls~~ 82 (204)
T PRK09958 43 TLKPDIVIIDVDIPGVN---------GIQVLETLRKRQYSGIIIIVSAK 82 (204)
T ss_pred ccCCCEEEEeCCCCCCC---------HHHHHHHHHhhCCCCeEEEEeCC
Confidence 35789999976543321 13467777777778888888753
No 216
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=25.02 E-value=1.7e+02 Score=21.73 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=24.1
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 93 VIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 93 ~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.|+|.+|+|=. +-.++++..++.+.+. ++++|+..|+
T Consensus 3 ~vyl~LGSNlg-----d~~~~l~~A~~~L~~~-~~~~v~~~S~ 39 (160)
T COG0801 3 RVYLGLGSNLG-----DRLKQLRAALAALDAL-ADIRVVAVSP 39 (160)
T ss_pred EEEEEecCCCC-----CHHHHHHHHHHHHHhC-CCceEEEecc
Confidence 68999999932 2233355666666654 5677877775
No 217
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.99 E-value=72 Score=25.68 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=20.8
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 93 VIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 93 ~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
++++++||---. .....+..+.+.+++.||+.+|.+-
T Consensus 3 IllvsFGTs~~~----ar~~ti~~ie~~~~~~fp~~~V~~A 39 (262)
T PF06180_consen 3 ILLVSFGTSYPE----AREKTIDAIEKAVREAFPDYDVRRA 39 (262)
T ss_dssp EEEEE---S-CC----CCHHHHHHHHHHHHHCSTTSEEEEE
T ss_pred EEEEeCCCCCHH----HHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 466777775321 2233566677788888888877754
No 218
>PF12636 DUF3781: Protein of unknown function (DUF3781); InterPro: IPR024229 This family of functionally uncharacterised proteins is found in bacteria and archaea. These proteins are typically between 82 and 98 amino acids in length and have two conserved sequence motifs: GKNWY and ITA.
Probab=24.95 E-value=45 Score=21.14 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.5
Q ss_pred CCCCCCHHHHHHHhhhh
Q psy1995 192 DYLHLTESGYRKVFTPV 208 (211)
Q Consensus 192 Dg~Hpn~~G~~~~a~~l 208 (211)
|.+|-|+.|+.++-+.|
T Consensus 6 dklhtT~lG~~RIkrNL 22 (73)
T PF12636_consen 6 DKLHTTELGVVRIKRNL 22 (73)
T ss_pred hhhcCcHHHHHHHHhcC
Confidence 78999999999987654
No 219
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.84 E-value=1.1e+02 Score=25.67 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=22.3
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVV 132 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~ 132 (211)
..+|+|+|.. +........++++.+|+.+|+..|+.
T Consensus 121 ~g~D~iviD~--------AhGhs~~~i~~ik~ik~~~P~~~vIa 156 (346)
T PRK05096 121 PALNFICIDV--------ANGYSEHFVQFVAKAREAWPDKTICA 156 (346)
T ss_pred CCCCEEEEEC--------CCCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 4677777732 22233445667888888888766543
No 220
>KOG1838|consensus
Probab=24.79 E-value=1e+02 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..++++++++.+++++|+++++.++.
T Consensus 180 ~t~Dl~~~v~~i~~~~P~a~l~avG~ 205 (409)
T KOG1838|consen 180 WTEDLREVVNHIKKRYPQAPLFAVGF 205 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 45688999999999999999999885
No 221
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.63 E-value=1.3e+02 Score=21.44 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=38.8
Q ss_pred CcEEEEccchhc-------cc-Cc--chhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 36 PELVFIGDSLIS-------FL-TQ--TQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 36 ~~il~iGDS~t~-------g~-~~--~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
.-|+.+||.++. |- .. .....+.+ .+..+...++-++....+.+.+.+ .. .+.|+||+..|+-
T Consensus 3 v~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~-~~--~~~DliIttGG~g 77 (144)
T TIGR00177 3 VAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRK-AV--DEADVVLTTGGTG 77 (144)
T ss_pred EEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHH-HH--hCCCEEEECCCCC
Confidence 357888998885 21 00 01112222 245677788888888888777764 33 3789999886644
No 222
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.59 E-value=1.5e+02 Score=20.79 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=37.8
Q ss_pred CcEEEEccchhcccCc-c--hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 36 PELVFIGDSLISFLTQ-T--QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~-~--~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
..|+.+||-+..|-.. . .....+. .+..+.-.++-.+....+.+.+.+ .+. +.|+||...|+-
T Consensus 2 v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~-~~~--~~DlvittGG~g 69 (133)
T cd00758 2 VAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIE-ASR--EADLVLTTGGTG 69 (133)
T ss_pred EEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHH-HHh--cCCEEEECCCCC
Confidence 3578899988766311 1 1112222 234566666777777777777764 332 388888876654
No 223
>PRK08006 replicative DNA helicase; Provisional
Probab=24.56 E-value=2e+02 Score=25.35 Aligned_cols=56 Identities=7% Similarity=0.054 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCeEEEEeccCCCCcc---chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 118 IRLVQTKQPQADVVVLELLPRGKLI---NKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 118 i~~i~~~~p~~~ii~~~~~p~~~~~---~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
++.++.+.++..+|++..+-.-..+ ......+..+.+.|+.+|++ .+|++|=+...
T Consensus 327 ~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke----l~ipVi~LsQL 385 (471)
T PRK08006 327 ARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE----LQVPVVALSQL 385 (471)
T ss_pred HHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH----hCCeEEEEEec
Confidence 3333444567899999874322211 11224588889999999998 89988866533
No 224
>PRK08506 replicative DNA helicase; Provisional
Probab=24.54 E-value=2.2e+02 Score=25.04 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=34.7
Q ss_pred HHHHHhhCCCCeEEEEeccCCCCcc---chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 118 IRLVQTKQPQADVVVLELLPRGKLI---NKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 118 i~~i~~~~p~~~ii~~~~~p~~~~~---~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
++.++...++..+|++..+-....+ ......+..+.+.|+.+|++ .+|+++=+.
T Consensus 293 ~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAke----l~ipVi~ls 349 (472)
T PRK08506 293 LRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARE----LDIPIIALS 349 (472)
T ss_pred HHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHH----hCCcEEEEe
Confidence 3344444567889998875322211 11234577888899999998 888887554
No 225
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=24.48 E-value=80 Score=26.07 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=12.5
Q ss_pred cCCCcEEEEccchhcc
Q psy1995 33 ESEPELVFIGDSLISF 48 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g 48 (211)
..+.+||++|.|.-.|
T Consensus 39 ngPKkVLviGaSsGyG 54 (398)
T COG3007 39 NGPKKVLVIGASSGYG 54 (398)
T ss_pred CCCceEEEEecCCccc
Confidence 4678999999996444
No 226
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=24.35 E-value=2.4e+02 Score=19.28 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 115 LELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
+++++.+-... ...+++.-.-|... +.+..+.+. +-+.+++.++. -++.++|..
T Consensus 49 R~i~~~aL~~~-A~~vil~HNHPsG~-~~PS~~D~~-~T~~l~~~~~~----l~i~llDHi 102 (113)
T cd08071 49 REIFKEALRHN-AAAIILAHNHPSGD-PTPSREDIE-LTKRLKEAGEL----LGIRLLDHI 102 (113)
T ss_pred HHHHHHHHHHh-hheEEEEeeCCCCC-CCCCHHHHH-HHHHHHHHHHH----CCCEEeeEE
Confidence 44554444431 33455555555443 222222233 33667787876 899999874
No 227
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=24.12 E-value=3.4e+02 Score=21.61 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=10.5
Q ss_pred cCCCcEEEEccch
Q psy1995 33 ESEPELVFIGDSL 45 (211)
Q Consensus 33 ~~~~~il~iGDS~ 45 (211)
..+-++++|||++
T Consensus 217 ~~~~~~lmIGD~~ 229 (279)
T TIGR01452 217 IDPARTLMVGDRL 229 (279)
T ss_pred CChhhEEEECCCh
Confidence 3456899999996
No 228
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=23.84 E-value=92 Score=19.58 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=22.4
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeE
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADV 130 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~i 130 (211)
.+..+|-...-.|-..+....-.+.+.+++..+++++|++.|
T Consensus 28 ~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~a~i 69 (71)
T cd04910 28 FKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPNAEI 69 (71)
T ss_pred cCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCccCcc
Confidence 444444443333333322222233456778888888888765
No 229
>KOG3662|consensus
Probab=23.79 E-value=3.4e+02 Score=23.49 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=47.6
Q ss_pred CCCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC-CCccchhhHHHHHHHHHHHHHhCCC-
Q psy1995 88 SIKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQPQADVVVLELLPR-GKLINKLWTKNLATNQILADKLSPA- 163 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~-~~~~~~~~~~~~~~n~~l~~~~~~~- 163 (211)
..+||+|+++.-.=|-+ .+.++|.+.++++-.....+ ...+++.+....- +.......+.+.+++..+...-...
T Consensus 91 ~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k-~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg~~~r~f~ 169 (410)
T KOG3662|consen 91 RLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRK-GNIKVIYIAGNHDIGFGNELIPEWIDRFESVFGPTERRFD 169 (410)
T ss_pred ccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCC-CCCeeEEeCCccccccccccchhHHHHHHHhhcchhhhhc
Confidence 58999999987555533 78899999888855444443 2445554433221 1111112234666666655211110
Q ss_pred CCCCCeEEEeCCccc
Q psy1995 164 PLGPKVHLIQHNKDE 178 (211)
Q Consensus 164 ~~~~~v~~iD~~~~~ 178 (211)
.......++|.....
T Consensus 170 v~~~tf~~~d~~~ls 184 (410)
T KOG3662|consen 170 VGNLTFVMFDSNALS 184 (410)
T ss_pred cCCceeEEeeehhhc
Confidence 012445556655444
No 230
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=23.75 E-value=2.2e+02 Score=18.70 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=26.5
Q ss_pred CCCcEEEEEeccCCCC-----------CCHHHHHHHHHHHHHHHHhhCCCCeEE
Q psy1995 89 IKPKVIVILVGTNNTE-----------DSAENIADGILELIRLVQTKQPQADVV 131 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-----------~~~~~~~~~~~~~i~~i~~~~p~~~ii 131 (211)
.++.+-+..+|.+|.+ .+.....+.++++++.+ +.+|++.|+
T Consensus 33 ~rfnvSvaEv~~~D~~q~a~lg~a~vs~~~~~~~~~l~~v~~~i-e~~~~~ei~ 85 (90)
T PF04456_consen 33 NRFNVSVAEVGHQDSWQRAVLGFAVVSNSRAHAEQILDKVERFI-EENPDAEIL 85 (90)
T ss_dssp HHSS-EEEEEE-TT-SSEEEEEEEEEES-HHHHHHHHHHHHHHH-HHS-SSEEE
T ss_pred hhCCeEEEEecCCCcccEEEEEEEEEECCHHHHHHHHHHHHHHH-HhCCCEEEE
Confidence 3567788889998887 44556667777788777 556777665
No 231
>PRK12354 carbamate kinase; Reviewed
Probab=23.58 E-value=2.3e+02 Score=23.48 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=25.3
Q ss_pred EEEEEeccCCCC-----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 93 VIVILVGTNNTE-----DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 93 ~Vvi~~G~ND~~-----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
.+||.+|+|-+. .+.+.-.++++...+.|.....+-+|++.-
T Consensus 2 ~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~~~~vvi~H 48 (307)
T PRK12354 2 RIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAREHELVIVH 48 (307)
T ss_pred eEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 578999999876 344444445555555555544455555543
No 232
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=23.43 E-value=1.6e+02 Score=25.81 Aligned_cols=47 Identities=6% Similarity=-0.023 Sum_probs=32.7
Q ss_pred CCCcEEEEEeccCCCC-CCHH----HHHHHHHHHHHHHHh-hCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAE----NIADGILELIRLVQT-KQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~----~~~~~~~~~i~~i~~-~~p~~~ii~~~~ 135 (211)
.+.|+|||..|.-.-. .+-. .-.+-++++...|.+ ..|++.|++++.
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 4678999988875322 2222 234467888888888 589999888884
No 233
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.41 E-value=2.8e+02 Score=24.51 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
..+||+|.++. .++ . .....++++.+|+.+|++.||+=++.+.
T Consensus 61 ~~~pdvVgis~------~t~-~-~~~a~~~~~~~k~~~P~~~iV~GG~h~t 103 (497)
T TIGR02026 61 AHCPDLVLITA------ITP-A-IYIACETLKFARERLPNAIIVLGGIHPT 103 (497)
T ss_pred hcCcCEEEEec------Ccc-c-HHHHHHHHHHHHHHCCCCEEEEcCCCcC
Confidence 46899988853 121 1 2234568888899999998887666443
No 234
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=23.30 E-value=32 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=19.2
Q ss_pred CCccHHHHHHHHHHH-hhcCCCcEEEEccchh
Q psy1995 16 GDNRWYNQHEHQLQL-AKESEPELVFIGDSLI 46 (211)
Q Consensus 16 ~~~~w~~~~~~~~~~-~~~~~~~il~iGDS~t 46 (211)
...+|....-...+. ....++.|++-|||.|
T Consensus 70 ~i~~W~~~nv~~~aa~rp~rp~SivieG~sRT 101 (106)
T PF08283_consen 70 EIEEWADENVYSVAAARPLRPISIVIEGDSRT 101 (106)
T ss_pred HHHHHHHhccCcccccCCCCCCceeEecCCcc
Confidence 445676655332222 2345568999999988
No 235
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=23.24 E-value=2.9e+02 Score=23.64 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCeEEEEeccCCCCc--cchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 117 LIRLVQTKQPQADVVVLELLPRGKL--INKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 117 ~i~~i~~~~p~~~ii~~~~~p~~~~--~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
.++.++...++..+|++..+-.-.. .......+..+.+.|+.+|++ .++++|=+...
T Consensus 295 ~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke----~~i~Vi~lsQl 353 (421)
T TIGR03600 295 IARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKE----LDVPVVLLAQL 353 (421)
T ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHH----hCCcEEEeccc
Confidence 3444445555788999887532211 111224577888889999998 88888765543
No 236
>PRK11539 ComEC family competence protein; Provisional
Probab=23.23 E-value=1.7e+02 Score=27.50 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=40.1
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhc---CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-CCHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLF---EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE-DSAE 108 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~---~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~-~~~~ 108 (211)
.+..++++.||.-..+. ...-+.. ...++...+.-|..++.-.+-++ ..+|+++|++.|.++.. +..+
T Consensus 629 ~~~~~~LltGDi~~~~E---~~Ll~~~~~~l~~dvL~vpHHGS~tSss~~fl~-----~v~P~~aiiS~g~~NryghP~~ 700 (755)
T PRK11539 629 DGKHSILLTGDLEAQAE---QKLLSRYWQQLAATLLQVPHHGSNTSSSLPFIR-----AVNGKVALASASRYNAWRLPSV 700 (755)
T ss_pred ECCEEEEEEeCCChHHH---HHHHhcCccCcCCCEEEeCCCCCCCCChHHHHH-----hcCCCEEEEeCCCCCCCCCCCH
Confidence 45567888888433221 1111111 13466777776665543333332 46899999999987654 4444
Q ss_pred HHHH
Q psy1995 109 NIAD 112 (211)
Q Consensus 109 ~~~~ 112 (211)
+..+
T Consensus 701 ~v~~ 704 (755)
T PRK11539 701 KVKQ 704 (755)
T ss_pred HHHH
Confidence 4433
No 237
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=23.21 E-value=2.9e+02 Score=23.82 Aligned_cols=50 Identities=8% Similarity=-0.032 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHh
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKL 160 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~ 160 (211)
++....+.++++.+++. ++.+|+++.-- .....+....+..+.+.|+++|
T Consensus 25 ~D~~~~f~eil~~a~~~--~vD~VLiaGDL-Fd~~~Ps~~~~~~~~~~lr~~~ 74 (405)
T TIGR00583 25 DDSWNTFEEVLQIAKEQ--DVDMILLGGDL-FHENKPSRKSLYQVLRSLRLYC 74 (405)
T ss_pred hhHHHHHHHHHHHHHHc--CCCEEEECCcc-CCCCCCCHHHHHHHHHHHHHhh
Confidence 45667788999999887 67777777421 1111122345667777777755
No 238
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=23.18 E-value=1.5e+02 Score=24.16 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhC-CCCeEEEEeccCCCC-ccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 110 IADGILELIRLVQTKQ-PQADVVVLELLPRGK-LINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~~~-~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
-...+..+.+.|++.+ |+++|.+++=..+.. .-....+.+..+.+.|++++.+.. ..++.|.++.+.
T Consensus 41 aL~~L~~lc~~I~~vY~PGa~v~I~SDG~Vf~DllgV~D~~v~~Y~~~Lr~l~~~~~-~~~I~f~~l~dl 109 (278)
T PF05141_consen 41 ALRRLNGLCQAIEAVYPPGAKVTIISDGHVFNDLLGVPDEEVWAYGEALRELAEEKG-LDHIKFFRLEDL 109 (278)
T ss_dssp HHHHHHHHHHHHHHHSTT-EEEEEE--HHHHGGGTT--HHHHHHHHHHHHHHHHHCT--TTEEEE-GGG-
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEecCcEeccccCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCHHHh
Confidence 3568888899998877 899988886321111 001123568889999999887621 234888887666
No 239
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=23.12 E-value=2.6e+02 Score=20.87 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=27.3
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
...||+|++....-+.. -.+++..+++..|..+|++++..+
T Consensus 42 ~~~~dlvild~~~~~~~---------g~~~~~~lr~~~~~~pii~ls~~~ 82 (227)
T PRK09836 42 TGDYDLIILDIMLPDVN---------GWDIVRMLRSANKGMPILLLTALG 82 (227)
T ss_pred hCCCCEEEEECCCCCCC---------HHHHHHHHHhcCCCCCEEEEEcCC
Confidence 35689999866544432 234667777777788888887643
No 240
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=23.08 E-value=90 Score=28.39 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=27.7
Q ss_pred EEEeccCCCC--------CC----------HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 95 VILVGTNNTE--------DS----------AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 95 vi~~G~ND~~--------~~----------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
||+.|+||+. .. -..+...++++++..... +.+|-+++-
T Consensus 622 FvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~--~~pVtlCGE 678 (756)
T COG3605 622 FVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERH--GTPVTLCGE 678 (756)
T ss_pred EEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhc--CCCeeehhh
Confidence 7899999975 11 124566778888888777 788877763
No 241
>cd06266 RNaseH_typeII Ribonuclease H type II. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genome contained the combination of only RNase HI and HIII. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escheri
Probab=23.07 E-value=3.3e+02 Score=20.47 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=54.1
Q ss_pred EEEeccCCCC-CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEe
Q psy1995 95 VILVGTNNTE-DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQ 173 (211)
Q Consensus 95 vi~~G~ND~~-~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD 173 (211)
+..+|.+|.. .++++...-+.. |++..-...+.++++.-.+.. +........+++.+.+.... ....|||
T Consensus 30 l~~~gv~DSK~Lt~~~r~~l~~~----I~~~~~~~~v~~~~p~~id~~-nl~~~~~~~~~~~i~~l~~~----~~~i~iD 100 (193)
T cd06266 30 LKILGVKDSKKLSEKKREELFEE----IKEEALAYAIGIISPEEIDEL-NILQATALAMARAILNLGVK----PDEVLVD 100 (193)
T ss_pred ccccCCCCcccCCHHHHHHHHHH----HHhhCCeEEEEEECHHHHCHH-HHHHHHHHHHHHHHHhcCCC----CCEEEEC
Confidence 4567999988 666665544443 333211334444443211111 11112344455555555533 6778899
Q ss_pred CCccccccC----CCCccCC----CCCCCCCCHHHHHHHhhhhh
Q psy1995 174 HNKDEIISK----DEISQGD----FYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 174 ~~~~~~~~~----~~~~~~~----~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
-........ ....... -.|..||.-+..-++|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~kaD~~~~~VaAASIiAKv~r 144 (193)
T cd06266 101 GNGVPEKYFALEKKFLPIPVTAIVKGDSKSPSVAAASILAKVTR 144 (193)
T ss_pred CCCChhhhhhhcccCCCCCeEEEeccccccHhHHHHHHHHHHHH
Confidence 875421100 0001111 17888999998888887643
No 242
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=22.87 E-value=2e+02 Score=24.20 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=35.4
Q ss_pred cCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 69 IGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+...++.+++.|... ..... -..|....||.-+. .+.+++.+.|++-++.+++. +.++|+|..
T Consensus 87 LDW~~a~ELIrRs~a-eA~~~-g~~ia~GaGTD~L~~~~~~sld~V~~AY~eQ~~~ve~~--Gg~~ILMAS 153 (382)
T PF06187_consen 87 LDWAAARELIRRSAA-EARAV-GARIACGAGTDQLDPAPAASLDDVIAAYEEQLEAVEAA--GGRVILMAS 153 (382)
T ss_dssp B-HHHHHHHHHHHHH-HHHTS-S--EEEEE--TTS---TT--HHHHHHHHHHHHHHHHHT--T--EEE---
T ss_pred CChHHHHHHHHHHHH-HHHhc-CCcEEeecCcCCCCCCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeh
Confidence 344566677777653 12122 23566778877554 57788999999999999988 888888864
No 243
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=22.76 E-value=1.3e+02 Score=25.33 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=18.5
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCe
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQAD 129 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ 129 (211)
..+|+|+|-. +........++++.+|+.+|+..
T Consensus 120 ~~~d~iviD~--------AhGhs~~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 120 PQLKFICLDV--------ANGYSEHFVEFVKLVREAFPEHT 152 (343)
T ss_pred CCCCEEEEEC--------CCCcHHHHHHHHHHHHhhCCCCe
Confidence 4577777732 12223345556777777777543
No 244
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.35 E-value=1.1e+02 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 105 DSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 105 ~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
.+..++. ....+++.+++..|+.+|++.+..|..
T Consensus 29 ~SvGE~~-a~~~Li~~l~~~~p~~~illT~~T~tg 62 (186)
T PF04413_consen 29 ASVGEVN-AARPLIKRLRKQRPDLRILLTTTTPTG 62 (186)
T ss_dssp SSHHHHH-HHHHHHHHHTT---TS-EEEEES-CCH
T ss_pred CCHHHHH-HHHHHHHHHHHhCCCCeEEEEecCCch
Confidence 3444544 357899999999999999998876654
No 245
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.19 E-value=2.6e+02 Score=18.89 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHH
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILAD 158 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~ 158 (211)
..+|++|||.-|.+-...+++ +.+.++++ +..+-+|+. .+....||-.+.+
T Consensus 51 ~p~pe~liiGtG~~~~~~~~~--------~~~~l~~~--GI~ve~m~T----------~~Ac~tyN~L~~E 101 (110)
T PF04430_consen 51 EPKPEVLIIGTGKRQLFLPPE--------LREYLRKK--GIGVEVMDT----------PAACRTYNILASE 101 (110)
T ss_dssp CCS-SEEEEEETTS-SECTHH--------HHHHHHTT--T-EEEEE-H----------HHHHHHHHHHHHT
T ss_pred cCCCcEEEEccCCccccCCHH--------HHHHHHHc--CCeEEEECH----------HHHHHHHHHHHhC
Confidence 469999999999994334433 45566776 888888875 2446777766543
No 246
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=22.17 E-value=1.8e+02 Score=24.87 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
.+.|+|||..|.-... .+-.+ -.+-++++...+.+.. |++.|++++. |+
T Consensus 119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN-Pv 173 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN-PC 173 (387)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC-cH
Confidence 4678999988875322 23222 2345777888888855 8888888874 44
No 247
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=21.99 E-value=2.6e+02 Score=22.58 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.-+|.+|+..+| |.. .....+.++.+.+++..|...|...+.
T Consensus 118 ~NHPSIi~W~~g-NE~-----~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 118 RNHPSIIMWSLG-NES-----DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp TT-TTEEEEEEE-ESS-----HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred cCcCchheeecC-ccC-----ccccchhHHHHHHHhcCCCCceeeccc
Confidence 568999999999 876 555667788889999888876665554
No 248
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=21.86 E-value=1.1e+02 Score=29.23 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=8.8
Q ss_pred EEEeccCCCC
Q psy1995 95 VILVGTNNTE 104 (211)
Q Consensus 95 vi~~G~ND~~ 104 (211)
++++||||+.
T Consensus 763 FfSiGTNDLT 772 (879)
T PRK09279 763 FFSFGTNDLT 772 (879)
T ss_pred EEEEcccHHH
Confidence 6899999975
No 249
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=21.67 E-value=3.4e+02 Score=19.98 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhC---CCCeEEEEecc
Q psy1995 76 HCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQ---PQADVVVLELL 136 (211)
Q Consensus 76 ~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~---p~~~ii~~~~~ 136 (211)
.+.+++.. .+...+||.||+..-.=|.. ...+++.+.+..+.+.+.... ...+++++...
T Consensus 32 ~~~~~~~~-~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GN 96 (171)
T cd07384 32 YMRRAFKT-ALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGN 96 (171)
T ss_pred HHHHHHHH-HHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCc
Confidence 44555554 44478999999866333333 223344444444444433222 15667766543
No 250
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.63 E-value=2.2e+02 Score=24.53 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=5.8
Q ss_pred CCCCcEEEEEe
Q psy1995 88 SIKPKVIVILV 98 (211)
Q Consensus 88 ~~~pd~Vvi~~ 98 (211)
..+||.|||..
T Consensus 37 ~~~~D~viIaG 47 (407)
T PRK10966 37 EHQVDAIIVAG 47 (407)
T ss_pred hcCCCEEEECC
Confidence 34556555544
No 251
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=21.47 E-value=4.9e+02 Score=21.82 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CCCCcEEEEEeccCCCCCC-HHHHHHHHHHHHHHHHhhCCCCeEEEE-eccCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 88 SIKPKVIVILVGTNNTEDS-AENIADGILELIRLVQTKQPQADVVVL-ELLPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~-~~~~~~~~~~~i~~i~~~~p~~~ii~~-~~~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
..+..-|++++-.-|.... ..-....+.+.++.|. .+|+..++=+ +.+|+....-+..+....+++.-+++.+.
T Consensus 115 ~Gk~h~VlLmVd~~DlreG~~~~~~~~l~~~V~eI~-~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~ 190 (353)
T COG3457 115 MGKVHDVLLMVDYGDLREGQWGFLIEDLEETVEEIQ-QLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEAS 190 (353)
T ss_pred hCcceeEEEEEEcccccCcchhhHHHHHHHHHHHHh-cCCCceEEeeecccccccCcCCCcccHHHHHHHHHHHHHh
Confidence 3466678888887786611 1122345555666655 4689999999 67888764333334466666665555444
No 252
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=21.44 E-value=3.3e+02 Score=19.89 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=28.3
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...+.+++.++.++. +.+.......++.+++..|+++|++++.
T Consensus 71 ~~a~~~llv~~i~~~----~s~~~~~~~~~~~i~~~~~~~piilvgn 113 (187)
T cd04129 71 SKAHVILIGFAVDTP----DSLENVRTKWIEEVRRYCPNVPVILVGL 113 (187)
T ss_pred CCCCEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEee
Confidence 356788887877653 3333333346667777778899998875
No 253
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=21.37 E-value=3.3e+02 Score=19.75 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 114 ILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
+.+.++.+++. .-.+|+++...|....... ....+.+.+.+++.-.. ..+.+|+-|
T Consensus 101 i~~~l~~l~~~-g~~~iivlPl~P~~S~~Tt-~s~~~~~~~~~~~~~~~----~~~~~i~~~ 156 (159)
T cd03411 101 IEEALEELKAD-GVDRIVVLPLYPQYSASTT-GSYLDEVERALKKLRPA----PELRVIRSF 156 (159)
T ss_pred HHHHHHHHHHc-CCCEEEEEECCcccccccH-HHHHHHHHHHHHhcCCC----CcEEEeCcc
Confidence 34456666654 2357888888876654321 23355555555554322 567776543
No 254
>PRK10403 transcriptional regulator NarP; Provisional
Probab=21.25 E-value=2.8e+02 Score=20.08 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...||+|++..+.-+.. -.+++..+++..|..++++++..
T Consensus 50 ~~~~dlvi~d~~~~~~~---------~~~~~~~l~~~~~~~~ii~l~~~ 89 (215)
T PRK10403 50 RLDPDVILLDLNMKGMS---------GLDTLNALRRDGVTAQIIILTVS 89 (215)
T ss_pred hcCCCEEEEecCCCCCc---------HHHHHHHHHHhCCCCeEEEEeCC
Confidence 35789999976654432 13466777777788888888753
No 255
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=21.22 E-value=1.8e+02 Score=20.99 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=44.4
Q ss_pred CcEEEEccchhcccCc-c--hhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CCHH
Q psy1995 36 PELVFIGDSLISFLTQ-T--QIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DSAE 108 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~-~--~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~~~ 108 (211)
..|+.+||-++.|-.. . ....+.+. +..+.-.++-.+....+.+.+++ .....+.|+||...|+--.. .+++
T Consensus 3 ~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~-~~~~~~~DlVittGG~s~g~~D~t~~ 81 (152)
T cd00886 3 AAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIE-WADEDGVDLILTTGGTGLAPRDVTPE 81 (152)
T ss_pred EEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHH-HHhcCCCCEEEECCCcCCCCCcCcHH
Confidence 3578899988876421 1 11223332 45667777778887777777764 33223789988876654222 4444
Q ss_pred HHHH
Q psy1995 109 NIAD 112 (211)
Q Consensus 109 ~~~~ 112 (211)
.+.+
T Consensus 82 al~~ 85 (152)
T cd00886 82 ATRP 85 (152)
T ss_pred HHHH
Confidence 4443
No 256
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=21.18 E-value=2.6e+02 Score=22.53 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCCcEEEEEec------cCCCC----------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC
Q psy1995 89 IKPKVIVILVG------TNNTE----------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGK 140 (211)
Q Consensus 89 ~~pd~Vvi~~G------~ND~~----------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~ 140 (211)
.+=|+|||..- +||+. .++..-.+.+.++++.+++.. .-++|++...|+..
T Consensus 132 ~~rdIliVEG~~sR~GvGndLF~naksI~rIicPsknAy~~yd~I~e~i~~~~-k~~LiLlaLGPTAk 198 (265)
T TIGR03728 132 KNKDILIVEGETSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIRENA-KNKLILLMLGPTAK 198 (265)
T ss_pred CCCcEEEEecccccccCchhhhhCcccEEEEeCCChhHHHHHHHHHHHHHHhC-CCeEEEEecCCchh
Confidence 45577777532 56664 345667778899999999874 44677777766553
No 257
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=20.94 E-value=3.5e+02 Score=19.88 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=29.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...+.+|+.+..+|. +.|.......+..+++..+++++++++.
T Consensus 71 ~~a~~~ilvyd~~~~----~Sf~~~~~~w~~~i~~~~~~~piilvgn 113 (176)
T cd04133 71 RGADVFVLAFSLISR----ASYENVLKKWVPELRHYAPNVPIVLVGT 113 (176)
T ss_pred CCCcEEEEEEEcCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 356888888887764 3444333455666776667889998874
No 258
>PRK10651 transcriptional regulator NarL; Provisional
Probab=20.74 E-value=3.1e+02 Score=19.88 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...||+|++.....+.. -.++++.+++..|..++++++..
T Consensus 50 ~~~~dlvl~d~~l~~~~---------~~~~~~~l~~~~~~~~vi~l~~~ 89 (216)
T PRK10651 50 SLDPDLILLDLNMPGMN---------GLETLDKLREKSLSGRIVVFSVS 89 (216)
T ss_pred hCCCCEEEEeCCCCCCc---------HHHHHHHHHHhCCCCcEEEEeCC
Confidence 35689999876555432 13456677777778888888753
No 259
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=20.69 E-value=2.7e+02 Score=20.47 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=25.9
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
..||+|++.+..-|.. -.++++.+++..+..++++++..
T Consensus 43 ~~~d~illd~~~~~~~---------g~~~~~~l~~~~~~~pii~ls~~ 81 (222)
T PRK10643 43 GHYSLVVLDLGLPDED---------GLHLLRRWRQKKYTLPVLILTAR 81 (222)
T ss_pred CCCCEEEEECCCCCCC---------HHHHHHHHHhcCCCCcEEEEECC
Confidence 5689998876554432 12456666776678888888753
No 260
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=20.65 E-value=1.9e+02 Score=19.59 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=13.5
Q ss_pred HHHHHHhhCCCCeEEEEeccC
Q psy1995 117 LIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 117 ~i~~i~~~~p~~~ii~~~~~p 137 (211)
.++.++++.|++.+++++..|
T Consensus 24 ~~~~l~~~~p~~~l~i~G~~~ 44 (135)
T PF13692_consen 24 ALERLKEKHPDIELIIIGNGP 44 (135)
T ss_dssp HHHHHHHHSTTEEEEEECESS
T ss_pred HHHHHHHHCcCEEEEEEeCCH
Confidence 555666666777777776643
No 261
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=20.61 E-value=1.3e+02 Score=28.40 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=27.5
Q ss_pred EEEeccCCCCC------------------CHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 95 VILVGTNNTED------------------SAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 95 vi~~G~ND~~~------------------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
+|++|+||+.. ..+.+.+.+.++++.+++. +.++-+.+
T Consensus 687 fisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~--g~~vgicg 742 (782)
T TIGR01418 687 GFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEH--GKKVGICG 742 (782)
T ss_pred EEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhc--CCeEEEeC
Confidence 58899999861 2256778888888888886 76665543
No 262
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=20.60 E-value=3.1e+02 Score=19.26 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEeCC
Q psy1995 147 TKNLATNQILADKLSPAPLGPKVHLIQHN 175 (211)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~~~~~v~~iD~~ 175 (211)
..+..|-..|++.. . -.+.++|-.
T Consensus 69 ~~v~~f~~~L~~~~-~----~~v~~~DEr 92 (130)
T TIGR00250 69 ERAQKFANRLEGRF-G----VPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHHHHh-C----CCEEEEcCC
Confidence 34444444444433 2 345555543
No 263
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.53 E-value=1.5e+02 Score=25.72 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 105 DSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 105 ~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
.+.-++.. ..-+|+.+++.+|+.++++.+.+|++
T Consensus 57 aSVGEv~a-~~pLv~~l~~~~P~~~ilvTt~T~Tg 90 (419)
T COG1519 57 ASVGEVLA-ALPLVRALRERFPDLRILVTTMTPTG 90 (419)
T ss_pred cchhHHHH-HHHHHHHHHHhCCCCCEEEEecCccH
Confidence 34444433 47799999999999999999887765
No 264
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.47 E-value=3.6e+02 Score=22.60 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=63.4
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeccCCC--C-----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCc--cchh-
Q psy1995 76 HCLWRVQDGILDSIKPKVIVILVGTNNT--E-----DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKL--INKL- 145 (211)
Q Consensus 76 ~~~~~~~~~~~~~~~pd~Vvi~~G~ND~--~-----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~--~~~~- 145 (211)
+++..+.. .+..||.|-|.-=+|.. + ...+.+.+-+.+-++.+|+..|+++|++--..|.... ...+
T Consensus 114 ~vl~~l~~---~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~ 190 (332)
T PF07745_consen 114 DVLQALKA---AGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFD 190 (332)
T ss_dssp HHHHHHHH---TT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHH---CCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHH
Confidence 44455543 25678888773212211 1 3456777788888899999999999887655443320 0000
Q ss_pred --------------------hHHHHHHHHHHHHHhCCCCCC-CCeEEEeCCccccccCCCCcc-CC----CCCCCCCCHH
Q psy1995 146 --------------------WTKNLATNQILADKLSPAPLG-PKVHLIQHNKDEIISKDEISQ-GD----FYDYLHLTES 199 (211)
Q Consensus 146 --------------------~~~~~~~n~~l~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~-~~----~~Dg~Hpn~~ 199 (211)
...+..+...+..++++ + ..+.++...-.+...++.... .. ...+.=.|++
T Consensus 191 ~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~r---y~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~ 267 (332)
T PF07745_consen 191 NLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASR---YGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQ 267 (332)
T ss_dssp HHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHH---HT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHH
T ss_pred HHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHH---hCCeeEEEeccccccccccccccccCccccccCCCCCCHH
Confidence 01233333334433332 1 456666665444422211111 11 2457788999
Q ss_pred HHHHHhhhhhc
Q psy1995 200 GYRKVFTPVYE 210 (211)
Q Consensus 200 G~~~~a~~l~~ 210 (211)
|.+.+...|.+
T Consensus 268 GQ~~~l~~l~~ 278 (332)
T PF07745_consen 268 GQADFLRDLIN 278 (332)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988777653
No 265
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=20.34 E-value=3e+02 Score=24.03 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEEec
Q psy1995 75 EHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQP---QADVVVLEL 135 (211)
Q Consensus 75 ~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p---~~~ii~~~~ 135 (211)
..+.+.+.+ ....++|++|+|.-+ ..++.+-+++..+++.+++..| +.+|+.+..
T Consensus 78 ~~L~~aI~~-~~~~~~P~~I~V~tt-----C~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~t 135 (455)
T PRK14476 78 ENVEEAILN-ICKKAKPKIIGLCTT-----GLTETRGDDVAGALKEIRARHPELADTPIVYVST 135 (455)
T ss_pred HHHHHHHHH-HHHhhCCCEEEEeCc-----chHhhhhccHHHHHHHHHhhccccCCCeEEEecC
Confidence 445555544 333578998887521 3356667788899999988877 567776644
No 266
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.30 E-value=2.4e+02 Score=19.66 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=34.1
Q ss_pred EEEEccchhcccC--cc--hhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 38 LVFIGDSLISFLT--QT--QIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 38 il~iGDS~t~g~~--~~--~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
|+.+||.+..+.. .. ....+.+. +..+...++-.+....+.+.+++ ... ..|+||...|+-
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~-~~~--~~dliittGG~g 68 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALRE-ALE--RADLVITTGGTG 68 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHH-HHh--CCCEEEEcCCCC
Confidence 6788998887631 11 11222221 33455555556666666666654 232 478887776654
No 267
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=20.22 E-value=2.6e+02 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=28.9
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHH--HHHHHhhCCCCeEEEEeccCCC
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILEL--IRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~--i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
...+|+||| |=+..+.+.-.+....+ +..+++..|+++|++.++.+..
T Consensus 35 ~~~aDv~ii----NTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC~a~~ 84 (438)
T TIGR01574 35 AKEADVLLI----NTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGCMASH 84 (438)
T ss_pred cccCCEEEE----eccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCccccc
Confidence 346899998 33443333222222222 4566777889999999987654
Done!