Query psy1995
Match_columns 211
No_of_seqs 131 out of 1355
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:32:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxw_F Alpha2, platelet-activa 100.0 7.3E-40 2.5E-44 255.7 23.9 206 2-210 6-211 (229)
2 1es9_A PAF-AH, platelet-activa 100.0 1E-39 3.5E-44 255.2 22.3 205 2-210 5-210 (232)
3 4hf7_A Putative acylhydrolase; 100.0 8.8E-36 3E-40 229.7 6.8 169 33-210 24-203 (209)
4 2hsj_A Putative platelet activ 100.0 7.3E-32 2.5E-36 207.6 17.1 173 30-210 29-211 (214)
5 3p94_A GDSL-like lipase; serin 100.0 4E-33 1.4E-37 212.9 6.5 165 37-210 24-197 (204)
6 4h08_A Putative hydrolase; GDS 100.0 4.8E-31 1.7E-35 201.4 10.3 169 32-210 17-192 (200)
7 3dci_A Arylesterase; SGNH_hydr 100.0 9.8E-30 3.3E-34 198.6 9.9 166 32-210 20-224 (232)
8 3mil_A Isoamyl acetate-hydroly 100.0 4.1E-29 1.4E-33 195.0 8.3 169 35-210 3-205 (240)
9 3rjt_A Lipolytic protein G-D-S 100.0 7.2E-29 2.5E-33 190.4 8.6 171 33-210 6-211 (216)
10 3dc7_A Putative uncharacterize 100.0 2.6E-29 8.7E-34 195.9 5.4 173 31-210 17-218 (232)
11 3hp4_A GDSL-esterase; psychrot 100.0 1.3E-28 4.3E-33 185.3 9.1 162 35-210 2-176 (185)
12 1vjg_A Putative lipase from th 100.0 4.5E-29 1.6E-33 192.8 6.4 172 29-210 14-209 (218)
13 2q0q_A ARYL esterase; SGNH hyd 100.0 1.8E-28 6.2E-33 188.7 9.6 162 36-210 3-210 (216)
14 1ivn_A Thioesterase I; hydrola 100.0 1.9E-28 6.6E-33 185.4 8.7 161 36-210 2-172 (190)
15 1yzf_A Lipase/acylhydrolase; s 99.9 5.5E-28 1.9E-32 182.6 9.6 165 36-210 2-184 (195)
16 2vpt_A Lipolytic enzyme; ester 99.9 6.1E-28 2.1E-32 186.3 4.1 163 33-210 3-193 (215)
17 3bzw_A Putative lipase; protei 99.9 7.1E-28 2.4E-32 192.6 3.2 171 33-209 24-256 (274)
18 1k7c_A Rhamnogalacturonan acet 99.9 7.3E-28 2.5E-32 188.4 2.7 168 36-210 1-210 (233)
19 3skv_A SSFX3; jelly roll, GDSL 99.9 1.9E-25 6.5E-30 186.1 11.6 171 34-210 184-373 (385)
20 2o14_A Hypothetical protein YX 99.9 1.3E-25 4.3E-30 187.1 6.6 169 35-210 162-357 (375)
21 1esc_A Esterase; 2.10A {Strept 99.9 7.1E-25 2.4E-29 178.0 8.5 172 34-210 4-298 (306)
22 2wao_A Endoglucanase E; plant 99.9 2.9E-23 9.8E-28 170.9 12.1 162 34-210 121-325 (341)
23 2waa_A Acetyl esterase, xylan 99.9 6.5E-22 2.2E-26 163.2 12.1 106 88-210 223-331 (347)
24 2w9x_A AXE2A, CJCE2B, putative 99.9 7.4E-21 2.5E-25 157.9 14.0 105 88-210 234-351 (366)
25 4i8i_A Hypothetical protein; 5 99.1 4.9E-11 1.7E-15 94.5 6.5 172 32-209 7-220 (271)
26 3kvn_X Esterase ESTA; beta bar 98.9 1.6E-09 5.5E-14 95.7 5.7 119 89-210 145-314 (632)
27 1zmb_A Acetylxylan esterase re 98.5 7.8E-07 2.7E-11 71.1 9.5 134 62-210 73-222 (290)
28 2apj_A Putative esterase; AT4G 97.6 0.00089 3E-08 52.5 11.5 127 61-210 112-253 (260)
29 3bma_A D-alanyl-lipoteichoic a 95.7 0.034 1.2E-06 46.1 7.7 86 111-209 275-365 (407)
30 3pt5_A NANS (YJHS), A 9-O-acet 95.1 0.11 3.7E-06 41.7 8.3 126 75-209 165-327 (337)
31 3nvb_A Uncharacterized protein 94.1 0.021 7E-07 47.2 2.2 138 34-178 21-177 (387)
32 4e7p_A Response regulator; DNA 90.9 0.95 3.3E-05 31.0 7.2 86 33-137 18-104 (150)
33 2rjn_A Response regulator rece 90.0 2.5 8.5E-05 28.9 8.7 81 34-136 6-88 (154)
34 3eul_A Possible nitrate/nitrit 89.8 0.66 2.3E-05 31.9 5.5 84 32-136 12-98 (152)
35 3hv2_A Response regulator/HD d 88.9 3.1 0.00011 28.4 8.6 82 33-136 12-95 (153)
36 2qxy_A Response regulator; reg 88.8 2.1 7.2E-05 28.7 7.5 80 34-136 3-84 (142)
37 3jte_A Response regulator rece 88.2 2.9 0.0001 28.0 7.9 83 35-137 3-87 (143)
38 3ilh_A Two component response 88.0 1.8 6E-05 29.2 6.6 88 33-136 7-101 (146)
39 3cu5_A Two component transcrip 87.9 2.8 9.7E-05 28.3 7.7 81 36-137 3-87 (141)
40 3cz5_A Two-component response 87.1 3.6 0.00012 28.0 7.9 84 34-136 4-88 (153)
41 3kto_A Response regulator rece 86.9 1.4 4.9E-05 29.5 5.6 81 34-136 5-89 (136)
42 1qkk_A DCTD, C4-dicarboxylate 86.8 1.7 6E-05 29.8 6.1 81 34-136 2-84 (155)
43 2qr3_A Two-component system re 86.7 3.7 0.00013 27.3 7.7 80 35-136 3-89 (140)
44 3hdg_A Uncharacterized protein 86.7 2.3 7.7E-05 28.4 6.5 82 33-136 5-88 (137)
45 3eod_A Protein HNR; response r 86.6 2.5 8.4E-05 27.9 6.6 81 34-136 6-88 (130)
46 2zay_A Response regulator rece 86.2 2.1 7.1E-05 29.0 6.2 82 33-136 6-91 (147)
47 2rdm_A Response regulator rece 84.8 6.3 0.00021 25.8 8.9 83 34-137 4-89 (132)
48 3hzh_A Chemotaxis response reg 84.3 3.5 0.00012 28.4 6.7 84 34-136 35-120 (157)
49 3kht_A Response regulator; PSI 84.2 1.9 6.6E-05 29.1 5.2 82 34-136 4-90 (144)
50 3heb_A Response regulator rece 84.1 2.7 9.1E-05 28.7 6.0 89 35-136 4-98 (152)
51 3cg4_A Response regulator rece 83.5 7.7 0.00026 25.7 8.6 83 33-137 5-91 (142)
52 3eqz_A Response regulator; str 83.2 4.9 0.00017 26.4 7.0 37 91-136 47-83 (135)
53 3i42_A Response regulator rece 82.8 7 0.00024 25.4 7.6 83 35-139 3-89 (127)
54 3hdv_A Response regulator; PSI 82.7 5.8 0.0002 26.2 7.1 82 34-136 6-90 (136)
55 1dbw_A Transcriptional regulat 82.7 7.8 0.00027 25.2 7.9 80 35-136 3-84 (126)
56 3cnb_A DNA-binding response re 82.5 6.8 0.00023 26.0 7.5 86 33-136 6-93 (143)
57 1k68_A Phytochrome response re 82.0 4.6 0.00016 26.6 6.4 85 35-136 2-94 (140)
58 2b4a_A BH3024; flavodoxin-like 81.1 6.3 0.00022 26.1 6.9 84 31-136 11-98 (138)
59 1yio_A Response regulatory pro 81.1 11 0.00037 27.1 8.6 83 34-138 3-87 (208)
60 3grc_A Sensor protein, kinase; 79.0 7 0.00024 25.9 6.6 80 34-135 5-88 (140)
61 2qsj_A DNA-binding response re 78.2 5.4 0.00019 27.1 5.9 86 35-137 3-88 (154)
62 2qv0_A Protein MRKE; structura 77.9 8.3 0.00028 25.6 6.7 85 34-136 8-92 (143)
63 2qvg_A Two component response 77.6 13 0.00044 24.6 8.0 90 34-136 6-98 (143)
64 3cfy_A Putative LUXO repressor 77.4 11 0.00038 25.0 7.2 79 36-136 5-85 (137)
65 3cg0_A Response regulator rece 76.7 13 0.00045 24.4 7.7 82 33-136 7-91 (140)
66 1k66_A Phytochrome response re 75.9 14 0.00049 24.4 7.7 87 33-136 4-101 (149)
67 3rqi_A Response regulator prot 75.9 5.2 0.00018 28.4 5.4 82 34-137 6-89 (184)
68 3gt7_A Sensor protein; structu 75.3 16 0.00056 24.7 8.7 82 33-136 5-90 (154)
69 3f6c_A Positive transcription 75.3 6.2 0.00021 25.9 5.4 82 36-138 2-85 (134)
70 1a04_A Nitrate/nitrite respons 75.3 9.6 0.00033 27.6 6.8 82 34-136 4-88 (215)
71 3t8y_A CHEB, chemotaxis respon 74.0 8.1 0.00028 26.7 5.9 82 33-136 23-107 (164)
72 3h5i_A Response regulator/sens 73.9 17 0.00057 24.1 8.6 83 34-138 4-89 (140)
73 3mm4_A Histidine kinase homolo 73.8 23 0.00077 25.6 9.0 90 34-136 60-160 (206)
74 3n53_A Response regulator rece 73.6 5.4 0.00019 26.5 4.7 81 35-137 3-86 (140)
75 2r25_B Osmosensing histidine p 71.8 18 0.00063 23.7 7.2 86 35-136 2-90 (133)
76 3lua_A Response regulator rece 71.6 4 0.00014 27.2 3.7 84 34-136 3-90 (140)
77 4dad_A Putative pilus assembly 69.2 6.7 0.00023 26.3 4.4 83 33-136 18-104 (146)
78 1c9k_A COBU, adenosylcobinamid 69.1 16 0.00054 26.5 6.5 52 109-162 110-167 (180)
79 1srr_A SPO0F, sporulation resp 67.9 16 0.00054 23.5 6.0 79 36-136 4-84 (124)
80 3lte_A Response regulator; str 67.6 22 0.00076 23.0 7.4 80 34-135 5-88 (132)
81 3b2n_A Uncharacterized protein 66.8 10 0.00035 24.9 4.9 39 89-136 48-86 (133)
82 3ist_A Glutamate racemase; str 66.2 19 0.00064 27.9 6.8 65 61-135 7-75 (269)
83 2jfz_A Glutamate racemase; cel 65.9 15 0.0005 28.1 6.1 64 62-135 3-70 (255)
84 3iwt_A 178AA long hypothetical 65.5 4.9 0.00017 28.9 3.2 65 36-101 18-92 (178)
85 3kyj_B CHEY6 protein, putative 65.3 12 0.0004 25.0 5.1 83 32-135 10-95 (145)
86 3gl9_A Response regulator; bet 65.1 25 0.00084 22.6 6.7 78 36-135 3-84 (122)
87 1i3c_A Response regulator RCP1 64.8 28 0.00096 23.2 7.0 87 34-136 7-100 (149)
88 3t6k_A Response regulator rece 64.5 27 0.00093 22.9 6.8 81 34-136 3-87 (136)
89 1tmy_A CHEY protein, TMY; chem 64.2 13 0.00044 23.7 4.9 80 36-136 3-84 (120)
90 2gzm_A Glutamate racemase; enz 64.0 24 0.00083 27.0 7.1 65 61-135 5-73 (267)
91 3kcn_A Adenylate cyclase homol 63.9 16 0.00055 24.5 5.6 81 34-136 3-85 (151)
92 3ff4_A Uncharacterized protein 63.9 6.2 0.00021 26.7 3.2 105 34-173 3-110 (122)
93 1jbe_A Chemotaxis protein CHEY 63.7 26 0.00089 22.4 7.5 82 34-136 3-88 (128)
94 3nhm_A Response regulator; pro 63.7 27 0.00092 22.6 8.1 81 35-137 4-87 (133)
95 3a10_A Response regulator; pho 63.4 14 0.00048 23.3 5.0 78 37-136 3-82 (116)
96 2pln_A HP1043, response regula 61.8 25 0.00086 22.9 6.2 78 32-136 15-95 (137)
97 1mvo_A PHOP response regulator 60.6 27 0.00093 22.6 6.2 82 35-138 3-86 (136)
98 1jlj_A Gephyrin; globular alph 59.2 5.5 0.00019 29.2 2.4 80 32-112 13-102 (189)
99 1y81_A Conserved hypothetical 59.1 4.5 0.00015 27.9 1.9 111 33-177 12-125 (138)
100 1oju_A MDH, malate dehydrogena 58.1 23 0.00078 27.7 6.1 47 89-135 68-119 (294)
101 3crn_A Response regulator rece 58.0 18 0.00063 23.6 4.9 80 35-136 3-84 (132)
102 3h1g_A Chemotaxis protein CHEY 57.9 35 0.0012 22.0 7.4 83 34-136 4-90 (129)
103 3pqe_A L-LDH, L-lactate dehydr 57.8 19 0.00064 28.7 5.5 47 89-135 72-123 (326)
104 3snk_A Response regulator CHEY 57.7 8.3 0.00028 25.4 3.1 82 33-136 12-96 (135)
105 1p6q_A CHEY2; chemotaxis, sign 57.6 34 0.0012 21.9 6.2 82 34-136 5-90 (129)
106 2j48_A Two-component sensor ki 57.6 27 0.00094 21.6 5.6 80 36-137 2-85 (119)
107 3out_A Glutamate racemase; str 57.3 56 0.0019 25.1 8.1 65 61-135 9-77 (268)
108 1kgs_A DRRD, DNA binding respo 57.1 24 0.00084 25.4 5.9 79 36-136 3-83 (225)
109 2pl1_A Transcriptional regulat 56.6 24 0.00082 22.3 5.2 39 89-136 43-81 (121)
110 1zuw_A Glutamate racemase 1; ( 56.6 31 0.0011 26.5 6.6 64 62-135 6-74 (272)
111 1xhf_A DYE resistance, aerobic 55.5 37 0.0012 21.5 7.7 79 35-136 3-83 (123)
112 3nep_X Malate dehydrogenase; h 54.1 23 0.00079 28.0 5.5 47 89-135 68-119 (314)
113 3p7m_A Malate dehydrogenase; p 54.1 33 0.0011 27.2 6.4 47 89-135 72-123 (321)
114 3r0j_A Possible two component 53.9 24 0.00083 26.2 5.5 83 33-137 21-105 (250)
115 2jk1_A HUPR, hydrogenase trans 53.6 26 0.00087 23.0 5.1 79 36-136 2-81 (139)
116 1s8n_A Putative antiterminator 53.1 44 0.0015 23.7 6.6 81 34-136 12-94 (205)
117 2is8_A Molybdopterin biosynthe 52.6 11 0.00039 26.6 3.2 65 36-101 4-73 (164)
118 3q9s_A DNA-binding response re 52.5 22 0.00076 26.5 5.1 81 34-137 36-118 (249)
119 1b8p_A Protein (malate dehydro 52.5 33 0.0011 27.1 6.2 49 89-138 82-136 (329)
120 1zz1_A Histone deacetylase-lik 52.1 15 0.00052 29.9 4.2 50 86-135 253-310 (369)
121 1ys7_A Transcriptional regulat 52.0 38 0.0013 24.5 6.2 82 34-137 6-89 (233)
122 1ez4_A Lactate dehydrogenase; 51.8 26 0.00088 27.7 5.5 47 89-135 71-122 (318)
123 1p2f_A Response regulator; DRR 51.7 33 0.0011 24.7 5.8 40 89-137 42-81 (220)
124 3hhp_A Malate dehydrogenase; M 51.4 38 0.0013 26.7 6.4 47 89-135 68-119 (312)
125 1b73_A Glutamate racemase; iso 51.4 69 0.0024 24.1 7.7 63 63-135 4-70 (254)
126 1y5e_A Molybdenum cofactor bio 51.1 11 0.00038 26.8 2.9 77 32-111 12-95 (169)
127 2qzj_A Two-component response 51.0 49 0.0017 21.6 6.3 79 35-136 4-84 (136)
128 1mld_A Malate dehydrogenase; o 50.9 28 0.00096 27.4 5.5 47 89-135 67-118 (314)
129 1o6z_A MDH, malate dehydrogena 50.2 38 0.0013 26.5 6.2 47 89-135 69-120 (303)
130 3tl2_A Malate dehydrogenase; c 50.2 40 0.0014 26.6 6.3 47 89-135 77-128 (315)
131 3gvi_A Malate dehydrogenase; N 49.6 23 0.0008 28.1 4.9 47 89-135 74-125 (324)
132 2pjk_A 178AA long hypothetical 49.5 17 0.00057 26.2 3.7 79 33-112 15-105 (178)
133 1a2o_A CHEB methylesterase; ba 49.1 39 0.0013 27.0 6.2 80 35-136 3-85 (349)
134 1uuy_A CNX1, molybdopterin bio 49.0 12 0.0004 26.6 2.8 76 35-111 7-94 (167)
135 3uhf_A Glutamate racemase; str 48.7 40 0.0014 26.1 6.0 65 61-135 26-94 (274)
136 3f6p_A Transcriptional regulat 48.6 49 0.0017 20.9 7.1 77 36-135 3-81 (120)
137 2jba_A Phosphate regulon trans 47.7 30 0.001 22.1 4.6 39 88-135 44-84 (127)
138 3n0r_A Response regulator; sig 47.0 85 0.0029 24.1 7.7 83 33-137 158-243 (286)
139 3ldh_A Lactate dehydrogenase; 46.3 35 0.0012 27.3 5.4 48 88-135 87-139 (330)
140 1zgz_A Torcad operon transcrip 46.2 53 0.0018 20.6 5.8 78 36-136 3-82 (122)
141 2d4a_B Malate dehydrogenase; a 46.0 50 0.0017 25.9 6.3 47 89-135 66-117 (308)
142 3k7i_B IHH, HHG-2, indian hedg 45.9 16 0.00055 26.4 3.0 58 79-137 61-119 (187)
143 1dz3_A Stage 0 sporulation pro 45.6 52 0.0018 21.0 5.6 80 36-136 3-86 (130)
144 2lpm_A Two-component response 45.6 24 0.00081 23.6 3.8 84 33-137 6-89 (123)
145 2zqz_A L-LDH, L-lactate dehydr 45.1 36 0.0012 27.0 5.4 47 89-135 75-126 (326)
146 2xxj_A L-LDH, L-lactate dehydr 44.6 45 0.0015 26.2 5.8 47 89-135 66-117 (310)
147 3fxt_A Nucleoside diphosphate- 44.1 40 0.0014 22.4 4.5 46 89-136 30-77 (113)
148 2hqr_A Putative transcriptiona 44.1 85 0.0029 22.4 7.3 74 37-137 2-78 (223)
149 4aj2_A L-lactate dehydrogenase 43.8 34 0.0012 27.3 5.0 47 89-135 86-137 (331)
150 1y6j_A L-lactate dehydrogenase 43.7 45 0.0015 26.2 5.7 47 89-135 73-124 (318)
151 2pbq_A Molybdenum cofactor bio 43.2 12 0.00042 26.9 2.1 77 34-112 6-92 (178)
152 2jfn_A Glutamate racemase; cel 42.2 99 0.0034 23.8 7.4 65 62-135 24-92 (285)
153 3pzy_A MOG; ssgcid, seattle st 41.8 14 0.00048 26.2 2.2 65 34-101 8-77 (164)
154 1guz_A Malate dehydrogenase; o 41.7 55 0.0019 25.5 5.9 48 89-136 68-120 (310)
155 3klo_A Transcriptional regulat 41.7 27 0.00092 25.4 3.9 85 34-138 6-94 (225)
156 1smk_A Malate dehydrogenase, g 41.6 35 0.0012 27.0 4.8 47 89-135 75-126 (326)
157 2p10_A MLL9387 protein; putati 41.3 77 0.0026 24.8 6.4 50 89-139 182-238 (286)
158 3kbq_A Protein TA0487; structu 40.5 15 0.0005 26.5 2.1 64 35-101 5-73 (172)
159 3d0o_A L-LDH 1, L-lactate dehy 40.3 37 0.0013 26.7 4.7 47 89-135 73-124 (317)
160 2jfq_A Glutamate racemase; cel 40.0 84 0.0029 24.3 6.7 16 107-122 66-81 (286)
161 4hde_A SCO1/SENC family lipopr 40.0 91 0.0031 21.6 6.5 11 90-100 66-76 (170)
162 2d59_A Hypothetical protein PH 39.3 86 0.0029 21.3 6.0 105 35-173 22-129 (144)
163 3m6m_D Sensory/regulatory prot 39.1 80 0.0028 20.7 7.8 80 34-135 13-98 (143)
164 3vku_A L-LDH, L-lactate dehydr 39.0 30 0.001 27.5 4.0 47 89-135 75-126 (326)
165 3c3w_A Two component transcrip 39.0 26 0.00089 25.6 3.4 81 36-137 2-85 (225)
166 2g2c_A Putative molybdenum cof 38.6 21 0.00071 25.3 2.7 75 35-111 7-92 (167)
167 1iv0_A Hypothetical protein; r 38.5 76 0.0026 20.2 5.4 57 110-174 36-93 (98)
168 2gkg_A Response regulator homo 38.5 49 0.0017 20.8 4.5 76 36-133 6-86 (127)
169 2x0j_A Malate dehydrogenase; o 38.4 68 0.0023 25.0 5.9 47 89-135 68-119 (294)
170 2dwu_A Glutamate racemase; iso 38.2 55 0.0019 25.2 5.3 26 107-134 51-76 (276)
171 3jsz_A LGT1, putative uncharac 37.7 73 0.0025 26.0 5.8 50 115-177 153-202 (525)
172 3to5_A CHEY homolog; alpha(5)b 35.9 98 0.0033 20.7 6.7 83 33-136 10-96 (134)
173 3max_A HD2, histone deacetylas 35.9 10 0.00036 30.8 0.8 43 86-134 243-293 (367)
174 3fi9_A Malate dehydrogenase; s 35.6 42 0.0014 26.9 4.4 47 89-135 75-127 (343)
175 4a69_A Histone deacetylase 3,; 35.5 10 0.00036 30.9 0.7 43 86-134 244-294 (376)
176 3ew8_A HD8, histone deacetylas 35.5 13 0.00044 30.5 1.3 44 85-134 251-302 (388)
177 1ldn_A L-lactate dehydrogenase 35.5 69 0.0024 25.1 5.6 47 89-135 73-124 (316)
178 3men_A Acetylpolyamine aminohy 34.4 18 0.00063 29.3 2.0 41 87-133 288-336 (362)
179 2oho_A Glutamate racemase; iso 34.1 1.3E+02 0.0044 23.0 6.8 64 62-135 15-82 (273)
180 2i2x_B MTAC, methyltransferase 34.1 90 0.0031 23.7 5.9 65 60-137 150-214 (258)
181 1mb3_A Cell division response 33.4 79 0.0027 19.8 4.9 79 36-136 2-84 (124)
182 5mdh_A Malate dehydrogenase; o 33.1 1E+02 0.0034 24.5 6.2 47 89-135 78-130 (333)
183 1di6_A MOGA, molybdenum cofact 33.0 32 0.0011 25.2 3.0 77 35-112 5-90 (195)
184 1zh2_A KDP operon transcriptio 32.8 67 0.0023 20.0 4.4 38 89-136 44-81 (121)
185 2vvt_A Glutamate racemase; iso 32.7 1.7E+02 0.0058 22.5 7.4 64 62-135 27-94 (290)
186 2oqr_A Sensory transduction pr 32.3 84 0.0029 22.6 5.4 79 35-136 4-84 (230)
187 2v5j_A 2,4-dihydroxyhept-2-ENE 32.1 32 0.0011 26.8 3.0 42 90-133 188-237 (287)
188 3rfq_A Pterin-4-alpha-carbinol 32.0 20 0.00067 26.1 1.7 79 32-112 29-113 (185)
189 1ny5_A Transcriptional regulat 31.6 79 0.0027 25.5 5.5 40 89-137 43-82 (387)
190 2a9o_A Response regulator; ess 31.4 75 0.0026 19.7 4.5 77 37-136 3-81 (120)
191 3c3m_A Response regulator rece 30.6 1E+02 0.0036 19.8 5.2 80 36-137 4-87 (138)
192 1obb_A Maltase, alpha-glucosid 29.4 86 0.0029 26.4 5.4 29 107-135 125-153 (480)
193 3n1g_B Desert hedgehog protein 29.4 48 0.0016 23.8 3.3 59 79-138 53-112 (170)
194 4dnh_A Uncharacterized protein 29.2 1.1E+02 0.0039 24.5 5.6 62 71-135 93-158 (396)
195 1mkz_A Molybdenum cofactor bio 29.1 57 0.002 23.1 3.8 66 35-101 12-80 (172)
196 1y7t_A Malate dehydrogenase; N 29.0 1.3E+02 0.0045 23.4 6.2 47 89-135 79-131 (327)
197 1a5z_A L-lactate dehydrogenase 27.6 1.5E+02 0.005 23.2 6.2 47 89-135 66-117 (319)
198 2vyc_A Biodegradative arginine 27.0 1.2E+02 0.0042 27.0 6.3 43 89-136 52-94 (755)
199 7mdh_A Protein (malate dehydro 27.0 1.5E+02 0.0052 24.0 6.3 47 89-135 107-159 (375)
200 2duw_A Putative COA-binding pr 26.0 1.2E+02 0.0042 20.5 5.0 56 89-175 69-124 (145)
201 2yxb_A Coenzyme B12-dependent 25.9 1.7E+02 0.0057 20.3 7.0 64 60-136 45-109 (161)
202 3dzd_A Transcriptional regulat 25.7 88 0.003 25.1 4.7 40 89-137 43-82 (368)
203 3q9b_A Acetylpolyamine amidohy 25.3 39 0.0013 27.1 2.5 41 87-133 270-318 (341)
204 2vws_A YFAU, 2-keto-3-deoxy su 25.1 37 0.0013 26.1 2.2 41 91-133 168-216 (267)
205 4h7p_A Malate dehydrogenase; s 25.1 1.7E+02 0.0058 23.3 6.2 47 89-135 99-151 (345)
206 2v6b_A L-LDH, L-lactate dehydr 25.1 1.2E+02 0.0042 23.4 5.3 47 89-135 66-117 (304)
207 3u95_A Glycoside hydrolase, fa 24.9 1.2E+02 0.0041 25.5 5.5 23 113-135 138-160 (477)
208 1g66_A Acetyl xylan esterase I 24.5 82 0.0028 23.1 4.0 28 108-135 62-89 (207)
209 1qoz_A AXE, acetyl xylan ester 24.5 82 0.0028 23.1 4.0 25 111-135 65-89 (207)
210 4g3o_A E3 ubiquitin-protein li 24.1 80 0.0027 18.2 3.0 21 109-129 12-32 (58)
211 2czq_A Cutinase-like protein; 24.1 87 0.003 23.0 4.0 28 108-135 57-84 (205)
212 3q3j_B RHO-related GTP-binding 23.6 1.8E+02 0.0063 20.6 5.8 43 89-135 97-139 (214)
213 1dc7_A NTRC, nitrogen regulati 23.4 14 0.00047 23.6 -0.5 81 35-137 3-85 (124)
214 1dxe_A 2-dehydro-3-deoxy-galac 23.1 42 0.0014 25.5 2.2 40 91-132 168-215 (256)
215 1ur5_A Malate dehydrogenase; o 23.0 80 0.0027 24.6 3.9 47 89-135 69-120 (309)
216 3abz_A Beta-glucosidase I; gly 23.0 1.4E+02 0.0047 27.2 5.8 52 89-140 572-629 (845)
217 1pzg_A LDH, lactate dehydrogen 22.9 1.3E+02 0.0044 23.7 5.1 47 89-135 77-133 (331)
218 3c97_A Signal transduction his 22.9 1.6E+02 0.0054 18.9 7.4 80 35-136 10-96 (140)
219 3lp6_A Phosphoribosylaminoimid 22.8 70 0.0024 23.0 3.1 17 88-104 5-21 (174)
220 2ayx_A Sensor kinase protein R 22.6 1E+02 0.0035 22.9 4.3 84 34-137 128-211 (254)
221 3qz6_A HPCH/HPAI aldolase; str 22.5 56 0.0019 25.0 2.8 43 91-135 166-216 (261)
222 3nco_A Endoglucanase fncel5A; 22.3 1.9E+02 0.0066 22.2 6.1 45 89-134 132-178 (320)
223 4grd_A N5-CAIR mutase, phospho 22.1 54 0.0018 23.6 2.4 17 88-104 10-26 (173)
224 3eq2_A Probable two-component 21.9 88 0.003 25.0 4.0 80 34-135 4-85 (394)
225 3qpa_A Cutinase; alpha-beta hy 21.7 1.2E+02 0.004 22.2 4.3 30 106-135 75-104 (197)
226 1xmp_A PURE, phosphoribosylami 21.7 41 0.0014 24.1 1.7 17 88-104 9-25 (170)
227 3dcn_A Cutinase, cutin hydrola 21.4 1.1E+02 0.0036 22.5 4.0 30 106-135 83-112 (201)
228 2xwp_A Sirohydrochlorin cobalt 21.3 1.8E+02 0.0061 22.0 5.5 37 92-132 4-40 (264)
229 1u8x_X Maltose-6'-phosphate gl 21.2 2E+02 0.0069 24.0 6.2 47 89-135 101-172 (472)
230 3llu_A RAS-related GTP-binding 21.2 2.1E+02 0.0072 19.8 6.3 43 90-135 95-137 (196)
231 2ki0_A DS119; beta-alpha-beta, 21.0 28 0.00094 17.2 0.5 20 24-43 17-36 (36)
232 2i6t_A Ubiquitin-conjugating e 20.8 2E+02 0.0067 22.4 5.7 47 89-135 76-126 (303)
233 3qpd_A Cutinase 1; alpha-beta 20.7 1.3E+02 0.0044 21.8 4.3 29 107-135 72-100 (187)
No 1
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=100.00 E-value=7.3e-40 Score=255.74 Aligned_cols=206 Identities=45% Similarity=0.817 Sum_probs=186.0
Q ss_pred CCCCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995 2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV 81 (211)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~ 81 (211)
.||++.|++..+.....+|...+.++....+.++.+|+|+|||+|+|+.....|.+.+++..++|.|++|.++.+++.++
T Consensus 6 ~~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~GDSit~g~~~~~~~~~~~~~~~v~n~g~~G~t~~~~~~~~ 85 (229)
T 1fxw_F 6 SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRL 85 (229)
T ss_dssp CCGGGSCCCCCCSSSSCHHHHHHHHHHHHHHHCCCSEEEEESHHHHGGGGSHHHHHHTGGGTEEEEECTTCCHHHHHHHH
T ss_pred cCCCCCCCCCCCcCccchHHHHHHHHHHHcccCCCCEEEEecchhcCCCCchhHHHHcCCCcceeeccCcchHHHHHHHH
Confidence 59999999999999999999999999988888999999999999999877667998888899999999999999999999
Q ss_pred hcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhC
Q psy1995 82 QDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLS 161 (211)
Q Consensus 82 ~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~ 161 (211)
+...+...+||+|||++|+||.+.+.+++.+++.++++.+++.+|+++|++++++|....+...+..+..+|+.++++|+
T Consensus 86 ~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~ 165 (229)
T 1fxw_F 86 KNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLP 165 (229)
T ss_dssp HTTTTSSCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSS
T ss_pred HcCccccCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 87656567999999999999998889999999999999999999999999999998876554556789999999999998
Q ss_pred CCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 162 PAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 162 ~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+ ..++.|+|++..+.+.++.....++.||+|||++||++||+.|.+
T Consensus 166 ~---~~~v~~iD~~~~~~~~~g~~~~~~~~DgvHpn~~G~~~~a~~l~~ 211 (229)
T 1fxw_F 166 K---LANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHE 211 (229)
T ss_dssp S---SSSEEEECCCCSCBCTTSCBCTTTBTTSSSBCHHHHHHHHHHHHH
T ss_pred c---CCCeEEEeCHHHhhccCCCcchhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4 389999999999887666666677899999999999999998864
No 2
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=100.00 E-value=1e-39 Score=255.18 Aligned_cols=205 Identities=43% Similarity=0.781 Sum_probs=184.0
Q ss_pred CCCCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995 2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV 81 (211)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~ 81 (211)
.||++.|+++.+..+..+|+..+.++++..+.++.+|+|+|||+|+|+.....|.+.+.+..++|.|++|.++.+++.++
T Consensus 5 ~~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~GDSit~g~~~~~~~~~~l~~~~v~n~g~~G~t~~~~~~~~ 84 (232)
T 1es9_A 5 ENPASKPTPVQDVQGDGKWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNFGIGGDSTQHVLWRL 84 (232)
T ss_dssp CCGGGSCCCCCCSSSSCHHHHHHHHHHHHHHHCCCSEEEEESHHHHTHHHHSCHHHHTGGGCEEEEECTTCCHHHHHHHH
T ss_pred CCCCcCCCCccccccchHHHHHHHHHHHHhccCCCCEEEEechHhhccCccccHHHHCCCCceEEeecccccHHHHHHHH
Confidence 69999999999989999999999999998888999999999999999765445888888889999999999999999999
Q ss_pred hcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHH-Hh
Q psy1995 82 QDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILAD-KL 160 (211)
Q Consensus 82 ~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~-~~ 160 (211)
+...+...+||+|||++|+||...+.+++.+++.++++.+++.+|+++|++++++|....+...+..+.++|+.+++ .|
T Consensus 85 ~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a 164 (232)
T 1es9_A 85 ENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALA 164 (232)
T ss_dssp HTTTTTTCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCccccCCCCEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHh
Confidence 87556567999999999999998788999999999999999999999999999999877655566789999999999 77
Q ss_pred CCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 161 SPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 161 ~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++ .++.|+|++..+.+.++.....++.||+|||++||++||+.|.+
T Consensus 165 ~~----~~v~~iD~~~~~~~~~g~~~~~~~~Dg~Hpn~~G~~~~a~~i~~ 210 (232)
T 1es9_A 165 GH----PRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHS 210 (232)
T ss_dssp SC----TTEEEECCCCCCSCTTSCCCTTTBTTSSSBCHHHHHHHHHHHHH
T ss_pred hc----CCCEEEeChHHhcCCCCCcChhhcCCCCCCCHHHHHHHHHHHHH
Confidence 76 99999999999887666666777789999999999999998864
No 3
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.8e-36 Score=229.68 Aligned_cols=169 Identities=17% Similarity=0.295 Sum_probs=141.3
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-----CCH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE-----DSA 107 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~-----~~~ 107 (211)
.+..+|||+|||+|+||.. .+.+.++...++|+|++|.++.++++|++.+++ ..+||+|||++|+||+. .+.
T Consensus 24 ~~~~~Iv~~GDSit~gw~~--~~~~~~~~~~viN~Gi~G~tt~~~l~r~~~~v~-~~~Pd~vvi~~G~ND~~~~~~~~~~ 100 (209)
T 4hf7_A 24 KKEKRVVFMGNXITEGWVR--THPDFFKTNGYIGRGISGQTSYQFLLRFREDVI-NLSPALVVINAGTNDVAENTGAYNE 100 (209)
T ss_dssp GGGCCEEEEESHHHHHHHH--HCHHHHHHHTEEEEECTTCCHHHHHHHHHHHTG-GGCCSEEEECCCHHHHTTSSSSCCH
T ss_pred CCCCeEEEECcHHHhChhH--HHHHhcCCCCEEEeccCcccHHHHHHHHHHHHH-hcCCCEEEEEeCCCcCccccccccH
Confidence 4557899999999999743 355667777899999999999999999987666 58999999999999975 467
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc-----hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccC
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN-----KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISK 182 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~-----~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~ 182 (211)
+.+.+++.++++.+++ |+++|++++++|....+. .....+.++|+.++++|++ .++.|||++..+....
T Consensus 101 ~~~~~~l~~ii~~~~~--~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~----~~v~~iD~~~~~~~~~ 174 (209)
T 4hf7_A 101 DYTFGNIASMAELAKA--NKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKA----NKIPFVNYYQPMVVGE 174 (209)
T ss_dssp HHHHHHHHHHHHHHHH--TTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHH----TTCCEECSHHHHEETT
T ss_pred HHHHHHHHHhhHHHhc--cCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHh----cCCeEeecHHHHhccc
Confidence 8899999999999987 599999999998765432 2346789999999999998 8999999998875443
Q ss_pred -CCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 183 -DEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 183 -~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+...+.++.||+|||++||++||+.|.+
T Consensus 175 ~~~~~~~~~~DglHpn~~Gy~~~a~~i~~ 203 (209)
T 4hf7_A 175 NKALNPQYTKDGVHPTGEGYDIMEALIKQ 203 (209)
T ss_dssp TTEECGGGBSSSSSBCHHHHHHHHHHHHH
T ss_pred ccccCcccCCCCCCCCHHHHHHHHHHHHH
Confidence 3445667899999999999999998864
No 4
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=100.00 E-value=7.3e-32 Score=207.57 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=147.1
Q ss_pred HhhcCCCcEEEEccchhcccCcchhHHhhcC-CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CC
Q psy1995 30 LAKESEPELVFIGDSLISFLTQTQIWHNLFE-PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DS 106 (211)
Q Consensus 30 ~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~ 106 (211)
....++.+|+++|||+|+|++ |.+.++ ...+.|.|++|.++.+++.+++.... ..+||+|||++|+||.. .+
T Consensus 29 ~~~~~~~~i~~~GDSit~g~~----~~~~l~~~~~v~n~g~~G~~~~~~~~~l~~~~~-~~~pd~vvi~~G~ND~~~~~~ 103 (214)
T 2hsj_A 29 HISVVEPNILFIGDSIVEYYP----LQELFGTSKTIVNRGIRGYQTGLLLENLDAHLY-GGAVDKIFLLIGTNDIGKDVP 103 (214)
T ss_dssp HHCSSCCSEEEEESHHHHTCC----HHHHHCSSSCEEEEECTTCCHHHHHHTGGGGCC-CSCCCEEEEECCHHHHHTTCC
T ss_pred hcccccCCEEEEecchhcCCC----HHHHcCCcceEEecCccchhHHHHHHHhhHHHH-hcCCCEEEEEEecCcCCcCCC
Confidence 335678899999999999974 666665 35678999999999999999986444 57999999999999987 68
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc-------hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcccc
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN-------KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI 179 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~-------~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~ 179 (211)
++++.+++.++++.+++..|+++|++++++|....+. ..+..+..+|+.++++|++ .+++.|+|++..+.
T Consensus 104 ~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~---~~~~~~iD~~~~~~ 180 (214)
T 2hsj_A 104 VNEALNNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASA---YMQVEFVPVFDCLT 180 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHHHHTT---CTTEEEECCGGGSB
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHHHHHH---cCCCEEEEhHHHHh
Confidence 8999999999999999999999999999988876542 1245788999999999998 33999999999987
Q ss_pred ccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 180 ISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 180 ~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+..+.....++.||+|||++||++||+.|.+
T Consensus 181 ~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~ 211 (214)
T 2hsj_A 181 DQAGQLKKEYTTDGLHLSIAGYQALSKSLKD 211 (214)
T ss_dssp CTTSSBCGGGBSSSSSBCHHHHHHHHHHHHH
T ss_pred CcCCchhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 7666556667799999999999999999865
No 5
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=99.98 E-value=4e-33 Score=212.86 Aligned_cols=165 Identities=20% Similarity=0.287 Sum_probs=140.0
Q ss_pred cEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-----CCHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE-----DSAENIA 111 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~-----~~~~~~~ 111 (211)
+|+++|||+|+||... |.+.+.+..++|.|++|.++.+++.+++.... ..+||+|||++|+||.. .+++++.
T Consensus 24 ~i~~~GDSit~g~~~~--~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~-~~~pd~vvi~~G~ND~~~~~~~~~~~~~~ 100 (204)
T 3p94_A 24 NVVFMGNSITDGWWPA--DSTFFIRNNFVDRGISGQTTSEMLVRFRQDVI-NLKPKAVVILAGINDIAHNNGVIALENVF 100 (204)
T ss_dssp EEEEEESHHHHTHHHH--CTTHHHHHTEEEEECTTCCHHHHHHHHHHHTG-GGCEEEEEEECCHHHHTTTTSCCCHHHHH
T ss_pred eEEEEccchhhcccch--HHHhcccCceEEcccCcccHHHHHHHHHHHHH-hCCCCEEEEEeecCccccccCCCCHHHHH
Confidence 9999999999997432 44555566899999999999999999976444 47899999999999987 3789999
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCCccc----hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCcc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGKLIN----KLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQ 187 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~----~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~ 187 (211)
++++++++.+++ |+++|++++++|....+. .....+..+|+.++++|++ .++.|+|++..+.+..+....
T Consensus 101 ~~~~~~i~~~~~--~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~----~~v~~iD~~~~~~~~~~~~~~ 174 (204)
T 3p94_A 101 GNLVSMAELAKA--NHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADK----NGLTYVDYHSAMKDERNGLPA 174 (204)
T ss_dssp HHHHHHHHHHHH--TTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHH----TTCEEECHHHHHCCTTSSCCT
T ss_pred HHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH----cCCcEEchhhhhhcccccccc
Confidence 999999999998 599999999988765432 1345789999999999998 799999999988776666566
Q ss_pred CCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 188 GDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 188 ~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.++.||+|||++||++||+.|.+
T Consensus 175 ~~~~Dg~Hp~~~G~~~~a~~l~~ 197 (204)
T 3p94_A 175 NLSKDGVHPTLEGYKIMEKIVLE 197 (204)
T ss_dssp TTBSSSSSBCHHHHHHHHHHHHH
T ss_pred cccCCCCCcCHHHHHHHHHHHHH
Confidence 77899999999999999998864
No 6
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.8e-31 Score=201.40 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=135.4
Q ss_pred hcCCCcEEEEccchhcccCcchhHHhhcC-CcceEEeccCCchh-HHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 32 KESEPELVFIGDSLISFLTQTQIWHNLFE-PLHCLAFGIGGDKV-EHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~~~~~~~~~-~~~~~n~g~~G~~~-~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
+.+.++|+|+|||+|.||.. ...+.+. ...+.+.|.+|.++ ..+..+++. .+...+||+|+|++|+||...++++
T Consensus 17 ~~~~prVl~iGDSit~G~~~--~l~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~Vvi~~G~ND~~~~~~~ 93 (200)
T 4h08_A 17 KTDLPHVLLIGNSITRGYYG--KVEAALKEKAYVGRLSNSKSVGDPALIEELAV-VLKNTKFDVIHFNNGLHGFDYTEEE 93 (200)
T ss_dssp CCSSCEEEEEESHHHHHHHH--HHHHHTTTTCEEEEEEESCCTTCHHHHHHHHH-HHHHSCCSEEEECCCSSCTTSCHHH
T ss_pred cCCCCeEEEEchhHHhhhHH--HHHHHhccCCeEEEEeccCCccHHHHHHHHHH-HHhcCCCCeEEEEeeeCCCCCCHHH
Confidence 45667999999999999753 2445554 35677888876554 556666664 3335799999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc-----chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCC
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLI-----NKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDE 184 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~-----~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~ 184 (211)
|.++++++++.+++..|+++|++++++|..... ...+..+..+|+.++++|++ .++.|+|++..+....
T Consensus 94 ~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~----~~v~~iD~~~~~~~~~-- 167 (200)
T 4h08_A 94 YDKSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINR----ASIEVNDLWKVVIDHP-- 167 (200)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHH----TTCEEECHHHHHTTCG--
T ss_pred HHHHHHHHHHHHhhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhh----cceEEEecHHhHhcCH--
Confidence 999999999999999999999999988865422 12456789999999999998 8999999988775432
Q ss_pred CccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 185 ISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 185 ~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
...+..||+|||++||++||+.|++
T Consensus 168 -~~~~~~Dg~Hpn~~Gy~~~A~~i~~ 192 (200)
T 4h08_A 168 -EYYAGGDGTHPIDAGYSALANQVIK 192 (200)
T ss_dssp -GGTTTSCSSSCCHHHHHHHHHHHHH
T ss_pred -HHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 2344589999999999999999875
No 7
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=9.8e-30 Score=198.65 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=133.5
Q ss_pred hcCCCcEEEEccchhcccCc--------chhHHhhc-----CCcceEEeccCCchhH----------HHHHHhhcCCCCC
Q psy1995 32 KESEPELVFIGDSLISFLTQ--------TQIWHNLF-----EPLHCLAFGIGGDKVE----------HCLWRVQDGILDS 88 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~--------~~~~~~~~-----~~~~~~n~g~~G~~~~----------~~~~~~~~~~~~~ 88 (211)
+++..+|+|+|||+|+|+.. ...|...+ .+..++|.|++|.++. ..+.+++. .+..
T Consensus 20 q~~~~~I~~lGDSit~G~~~~~~~~~~~~~~w~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~l~~-~l~~ 98 (232)
T 3dci_A 20 QGHMKTVLAFGDSLTWGADPATGLRHPVEHRWPDVLEAELAGKAKVHPEGLGGRTTCYDDHAGPACRNGARALEV-ALSC 98 (232)
T ss_dssp ---CEEEEEEESHHHHTBCTTTCCBCCGGGSHHHHHHHHHTTSEEEEEEECTTCBSSCCCCSSSSCCBHHHHHHH-HHHH
T ss_pred cCCCCEEEEEECccccCCCCCCcccCCcCCccHHHHHHHhCCCCeEEEcccCCccccccCcccccchhHHHHHHH-HHhh
Confidence 45567899999999999854 23455332 4578999999999997 77888876 3334
Q ss_pred CCC-cEEEEEeccCCCC--C--CHHHHHHHHHHHHHHHHhhC-----CCCeEEEEeccCCCCccc-h-----hhHHHHHH
Q psy1995 89 IKP-KVIVILVGTNNTE--D--SAENIADGILELIRLVQTKQ-----PQADVVVLELLPRGKLIN-K-----LWTKNLAT 152 (211)
Q Consensus 89 ~~p-d~Vvi~~G~ND~~--~--~~~~~~~~~~~~i~~i~~~~-----p~~~ii~~~~~p~~~~~~-~-----~~~~~~~~ 152 (211)
.+| |+|||++|+||.. . +++++.++++++|+.+++.. |+++|++++++|...... . .......+
T Consensus 99 ~~p~d~VvI~~GtND~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (232)
T 3dci_A 99 HMPLDLVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPPCVAGPGGEPAGGRDIEQSMRL 178 (232)
T ss_dssp HCSCSEEEEECCTTTTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCCCCCCTTSSCGGGCCHHHHTTH
T ss_pred CCCCCEEEEEeccCCCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCcccCcccccccHHHHHHHH
Confidence 678 9999999999998 2 88999999999999999987 899999999887654311 1 14568899
Q ss_pred HHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 153 NQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 153 n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
|+.++++|++ .++.|+|++..+. .+..||+|||++||++||+.|++
T Consensus 179 ~~~~~~~a~~----~~v~~iD~~~~~~--------~~~~DgvHpn~~G~~~~A~~l~~ 224 (232)
T 3dci_A 179 APLYRKLAAE----LGHHFFDAGSVAS--------ASPVDGVHLDASATAAIGRALAA 224 (232)
T ss_dssp HHHHHHHHHH----HTCEEEEGGGTCC--------CCTTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCeEEcchHhcC--------cccCCCCCcCHHHHHHHHHHHHH
Confidence 9999999998 8999999876542 35699999999999999999874
No 8
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-29 Score=194.96 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=136.4
Q ss_pred CCcEEEEccchhc-ccCcc--------hhHHh----hc-CCcceEEeccCCchhHHHHHHhhcCCCC-CCCCcEEEEEec
Q psy1995 35 EPELVFIGDSLIS-FLTQT--------QIWHN----LF-EPLHCLAFGIGGDKVEHCLWRVQDGILD-SIKPKVIVILVG 99 (211)
Q Consensus 35 ~~~il~iGDS~t~-g~~~~--------~~~~~----~~-~~~~~~n~g~~G~~~~~~~~~~~~~~~~-~~~pd~Vvi~~G 99 (211)
..+|+++|||+|+ |+... ..|.. .+ ....++|.|++|.++.+++.+++. .+. ..+||+|||++|
T Consensus 3 ~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~~~~-~~~~~~~pd~vvi~~G 81 (240)
T 3mil_A 3 YEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILPE-ILKHESNIVMATIFLG 81 (240)
T ss_dssp CEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEECTTCCHHHHHHHHHH-HHHHCCCEEEEEEECC
T ss_pred cccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCcCcccHHHHHHHHHH-HhcccCCCCEEEEEee
Confidence 3589999999999 75431 12543 33 367899999999999999999885 443 368999999999
Q ss_pred cCCCC------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc-------------chhhHHHHHHHHHHHHHh
Q psy1995 100 TNNTE------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI-------------NKLWTKNLATNQILADKL 160 (211)
Q Consensus 100 ~ND~~------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~-------------~~~~~~~~~~n~~l~~~~ 160 (211)
+||.. .+.+++.++++++++.+++. +++|++++++|..... ...++.+..+|+.++++|
T Consensus 82 ~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a 159 (240)
T 3mil_A 82 ANDACSAGPQSVPLPEFIDNIRQMVSLMKSY--HIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLA 159 (240)
T ss_dssp TTTTSSSSTTCCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCcCCccCCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 99983 67899999999999999998 7899999988876431 112466889999999999
Q ss_pred CCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 161 SPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 161 ~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++ .++.|+|++..+....+.....++.||+|||++||++||+.|++
T Consensus 160 ~~----~~v~~vD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 205 (240)
T 3mil_A 160 NE----EKVPFVALNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDELLK 205 (240)
T ss_dssp HH----TTCCEECHHHHHHHHHGGGGGGGBSSSSSBCHHHHHHHHHHHHH
T ss_pred HH----hCCeEEehHHHHhhcCCccHhhccCCCCCcCHHHHHHHHHHHHH
Confidence 98 89999999988765544334556799999999999999998864
No 9
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=99.95 E-value=7.2e-29 Score=190.35 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=135.4
Q ss_pred cCCCcEEEEccchhcccCc-----------chhHHh--------hcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCC
Q psy1995 33 ESEPELVFIGDSLISFLTQ-----------TQIWHN--------LFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKP 91 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~-----------~~~~~~--------~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~p 91 (211)
.+..+|+++|||+|+|++. ...|.. .++ +..+.|.|++|.++.+++.++..... ..+|
T Consensus 6 ~~~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~-~~~p 84 (216)
T 3rjt_A 6 EPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVM-ALQP 84 (216)
T ss_dssp CTTCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTG-GGCC
T ss_pred CCCCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHh-hcCC
Confidence 4567999999999998653 223432 232 37899999999999999999876444 5789
Q ss_pred cEEEEEeccCCCC------------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCc-cchhhHHHHHHHHHHHH
Q psy1995 92 KVIVILVGTNNTE------------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKL-INKLWTKNLATNQILAD 158 (211)
Q Consensus 92 d~Vvi~~G~ND~~------------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~-~~~~~~~~~~~n~~l~~ 158 (211)
|+|||++|+||.. .+++++.++++++++.+++. +++|+++++++.... ....+..+.++|+.+++
T Consensus 85 d~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~ 162 (216)
T 3rjt_A 85 DYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR--VREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRD 162 (216)
T ss_dssp SEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG--SSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc--CCeEEEECCCcCCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999986 24889999999999999999 999999986543322 22346779999999999
Q ss_pred HhCCCCCCCCeEEEeCCccccccC-CCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 159 KLSPAPLGPKVHLIQHNKDEIISK-DEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 159 ~~~~~~~~~~v~~iD~~~~~~~~~-~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+|++ .++.|+|++..+.+.. ......++.||+|||++||++||+.|++
T Consensus 163 ~a~~----~~~~~vD~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 211 (216)
T 3rjt_A 163 VAAS----EHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLT 211 (216)
T ss_dssp HHHH----HTCCEECHHHHHHHHHTTSCHHHHCSSSSSCCHHHHHHHHHHHHH
T ss_pred HHHH----cCCeEEEcHHHHHHHHhcCCCcccccCCcCCChHHHHHHHHHHHH
Confidence 9998 8999999998876532 2223345689999999999999999875
No 10
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=99.95 E-value=2.6e-29 Score=195.93 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=133.1
Q ss_pred hhcCCCcEEEEccchhcccCcc-hhHH----hhcCCcceEEeccCCchhH----HHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 31 AKESEPELVFIGDSLISFLTQT-QIWH----NLFEPLHCLAFGIGGDKVE----HCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 31 ~~~~~~~il~iGDS~t~g~~~~-~~~~----~~~~~~~~~n~g~~G~~~~----~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
.+....+|+++|||+|+|++.. ..|. +.+....+.|.|++|.++. .+..++.. + ..+||+|+|++|+|
T Consensus 17 ~~~~~~~i~~lGDSit~G~g~~~~~~~~~l~~~l~~~~v~N~g~~G~t~~~~~~~~~~~~~~--~-~~~pd~Vii~~G~N 93 (232)
T 3dc7_A 17 GHVSFKRPAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQA--I-PEDADFIAVFGGVN 93 (232)
T ss_dssp -CBCCSSEEEEESTTTSTTCSSSSCHHHHHHHHHTCSCCEEEECTTCCSSTTSSCHHHHGGG--S-CTTCSEEEEECCHH
T ss_pred cCCCcceEEEEcccccccCCCCCCcHHHHHHHHhCCceeEEeeeCCcccccChHHHHHHHHh--c-CCCCCEEEEEEecc
Confidence 3456789999999999987421 1344 3334558999999999998 48888875 4 36999999999999
Q ss_pred CCC----------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc--------chhhHHHHHHHHHHHHHhCCC
Q psy1995 102 NTE----------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI--------NKLWTKNLATNQILADKLSPA 163 (211)
Q Consensus 102 D~~----------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~--------~~~~~~~~~~n~~l~~~~~~~ 163 (211)
|.. ...++|..+++++++.+++.+|+++|++++++|..... +.....+.++|+.++++|++
T Consensus 94 D~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~- 172 (232)
T 3dc7_A 94 DYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTAD- 172 (232)
T ss_dssp HHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHH-
T ss_pred ccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHH-
Confidence 964 23456788999999999999999999999988765431 11134568999999999998
Q ss_pred CCCCCeEEEeCCccccccC--CCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 164 PLGPKVHLIQHNKDEIISK--DEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 164 ~~~~~v~~iD~~~~~~~~~--~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.++.|+|++..+.... ......++.||+|||++||++||+.|++
T Consensus 173 ---~~v~~iD~~~~~~~~~~~~~~~~~~~~DgvHpn~~G~~~iA~~i~~ 218 (232)
T 3dc7_A 173 ---YGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQS 218 (232)
T ss_dssp ---HTCCEEEHHHHSSCCTTSHHHHHHHBSSSSSBCHHHHHHHHHHHHH
T ss_pred ---cCCcEEecccccCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 8999999988753211 1112345699999999999999999874
No 11
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=99.95 E-value=1.3e-28 Score=185.32 Aligned_cols=162 Identities=17% Similarity=0.246 Sum_probs=128.3
Q ss_pred CCcEEEEccchhcccCcc--hhHHhh--------cCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC
Q psy1995 35 EPELVFIGDSLISFLTQT--QIWHNL--------FEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE 104 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~--~~~~~~--------~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~ 104 (211)
..+|+++|||+|+|++.. ..|... .....+.|.|++|.++.+++.+++. .+...+||+|||++|+||..
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~-~~~~~~pd~vvi~~G~ND~~ 80 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDA-LLEQYEPTHVLIELGANDGL 80 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHH-HHHHHCCSEEEEECCHHHHH
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHH-HHhhcCCCEEEEEeecccCC
Confidence 568999999999987432 234322 2346899999999999999999886 34346999999999999975
Q ss_pred --CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec-cCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcccccc
Q psy1995 105 --DSAENIADGILELIRLVQTKQPQADVVVLEL-LPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIIS 181 (211)
Q Consensus 105 --~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~-~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~ 181 (211)
.+++++.++++++++.+++. +++|+++++ .|.... ......+|+.++++|++ .++.|+|++......
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~--~~~vvl~~~~~p~~~~----~~~~~~~~~~~~~~a~~----~~~~~vd~~~~~~~~ 150 (185)
T 3hp4_A 81 RGFPVKKMQTNLTALVKKSQAA--NAMTALMEIYIPPNYG----PRYSKMFTSSFTQISED----TNAHLMNFFMLDIAG 150 (185)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCSTTC----HHHHHHHHHHHHHHHHH----HCCEEECCTTTTTTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCccc----HHHHHHHHHHHHHHHHH----cCCEEEcchhhhcCC
Confidence 78999999999999999998 889998885 233221 23578999999999998 799999997554321
Q ss_pred CCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 182 KDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 182 ~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
....+..||+|||++||++||+.|++
T Consensus 151 ---~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 176 (185)
T 3hp4_A 151 ---KSDLMQNDSLHPNKKAQPLIRDEMYD 176 (185)
T ss_dssp ---CGGGBCTTSSSBCTTHHHHHHHHHHH
T ss_pred ---CcccccCCCCCcCHHHHHHHHHHHHH
Confidence 12344689999999999999998864
No 12
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=99.95 E-value=4.5e-29 Score=192.77 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=135.1
Q ss_pred HHhhcCCCcEEEEccchhcccCcc--hhHHhhc--------CCcceEEeccCCchhHHHHHHhhcCCCCC---CCCcEEE
Q psy1995 29 QLAKESEPELVFIGDSLISFLTQT--QIWHNLF--------EPLHCLAFGIGGDKVEHCLWRVQDGILDS---IKPKVIV 95 (211)
Q Consensus 29 ~~~~~~~~~il~iGDS~t~g~~~~--~~~~~~~--------~~~~~~n~g~~G~~~~~~~~~~~~~~~~~---~~pd~Vv 95 (211)
+.......+|+|+|||+|+|++.. ..|...+ .+..+.|.|++|.++.+++.+++...+.. .+||+||
T Consensus 14 ~~~~~~~~~i~~lGDSit~g~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~~~~pd~vv 93 (218)
T 1vjg_A 14 TKQSKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVV 93 (218)
T ss_dssp ---CCEEEEEEEEESHHHHTTTCTTSCHHHHHHHHHHHHTTEEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred ccccCCCceEEEEccccccCCCCCCCCCHHHHHHHHHHhcCCCeEEEeCCCCCcCHHHHHHHhHHhhhhhhccCCCCEEE
Confidence 444456679999999999998542 3454322 35678999999999999998886533332 5899999
Q ss_pred EEeccCCCC-------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC---CCccchhhHHHHHHHHHHHHHhCCCCC
Q psy1995 96 ILVGTNNTE-------DSAENIADGILELIRLVQTKQPQADVVVLELLPR---GKLINKLWTKNLATNQILADKLSPAPL 165 (211)
Q Consensus 96 i~~G~ND~~-------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~---~~~~~~~~~~~~~~n~~l~~~~~~~~~ 165 (211)
|++|+||.. .+++++.+++.++++.+++. ++|++++++|. ... ..+..+.++|+.++++|++
T Consensus 94 i~~G~ND~~~~~~~~~~~~~~~~~~l~~li~~l~~~---~~iil~~~~p~~~~~~~--~~~~~~~~~n~~l~~~a~~--- 165 (218)
T 1vjg_A 94 FSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKL---YPVLMISPAPYIEQQDP--GRRRRTIDLSQQLALVCQD--- 165 (218)
T ss_dssp EECCHHHHCEETTEESSCHHHHHHHHHHHHHHHHHH---SCEEEECCCCCCCTTCT--THHHHHHHHHHHHHHHHHH---
T ss_pred EEecCCcchhhcccccCCHHHHHHHHHHHHHHHHHh---CcEEEECCCCccccccc--hHHHHHHHHHHHHHHHHHH---
Confidence 999999986 36789999999999999998 88999999887 332 3456789999999999998
Q ss_pred CCCeEEEeCCccccccCCCCccCCC-CCCCCCCHHHHHHHhhhhhc
Q psy1995 166 GPKVHLIQHNKDEIISKDEISQGDF-YDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 166 ~~~v~~iD~~~~~~~~~~~~~~~~~-~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.++.|+|++..+....+ ....++ .||+|||++||++||+.|++
T Consensus 166 -~~v~~iD~~~~~~~~~~-~~~~~~~~DgvHpn~~G~~~~A~~i~~ 209 (218)
T 1vjg_A 166 -LDVPYLDVFPLLEKPSV-WLHEAKANDGVHPQAGGYTEFARIVEN 209 (218)
T ss_dssp -HTCCEECCTGGGSTTSS-HHHHHHHTTSSCCCHHHHHHHHHHHHT
T ss_pred -cCCcEEehHHhhccchh-hhhhccccCCCCCCHHHHHHHHHHHHc
Confidence 79999999988865432 122334 59999999999999999875
No 13
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=99.95 E-value=1.8e-28 Score=188.68 Aligned_cols=162 Identities=21% Similarity=0.255 Sum_probs=130.6
Q ss_pred CcEEEEccchhcccCcc------------hhHH----hhc-CCcceEEeccCCchhH---------HHHHHhhcCCCCCC
Q psy1995 36 PELVFIGDSLISFLTQT------------QIWH----NLF-EPLHCLAFGIGGDKVE---------HCLWRVQDGILDSI 89 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~------------~~~~----~~~-~~~~~~n~g~~G~~~~---------~~~~~~~~~~~~~~ 89 (211)
.+|+++|||+|+|++.. ..|. +.+ ....++|.|++|.++. ..+.+++. .+...
T Consensus 3 ~~i~~~GDSit~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~l~~-~l~~~ 81 (216)
T 2q0q_A 3 KRILCFGDSLTWGWVPVEDGAPTERFAPDVRWTGVLAQQLGADFEVIEEGLSARTTNIDDPTDPRLNGASYLPS-CLATH 81 (216)
T ss_dssp EEEEEEESHHHHTBCCCTTCCCBCBCCTTTSHHHHHHHHHCTTEEEEEEECTTCBSSCCBTTBTTCBHHHHHHH-HHHHH
T ss_pred ceEEEEecCcccCcCCCCCccccccCCcccchHHHHHHHhCCCCeEEecCcCcccccccCCccccccHHHHHHH-HHHhC
Confidence 57999999999998642 2343 233 4578999999999988 56777765 33345
Q ss_pred CC-cEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhC-------CCCeEEEEeccCCCCccc--------hhhHHH
Q psy1995 90 KP-KVIVILVGTNNTE----DSAENIADGILELIRLVQTKQ-------PQADVVVLELLPRGKLIN--------KLWTKN 149 (211)
Q Consensus 90 ~p-d~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~-------p~~~ii~~~~~p~~~~~~--------~~~~~~ 149 (211)
+| |+|||++|+||.. .+++++.++++++++.+++.. |.++|++++++|...... ......
T Consensus 82 ~p~d~vvi~~G~ND~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~~~~~~~~~~~~~~~~~ 161 (216)
T 2q0q_A 82 LPLDLVIIMLGTNDTKAYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPMPHPWFQLIFEGGEQKT 161 (216)
T ss_dssp CSCSEEEEECCTGGGSGGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCCCSHHHHHHTTTHHHHH
T ss_pred CCCCEEEEEecCcccchhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcccCCcchhhhccHHHHH
Confidence 77 9999999999985 578999999999999999998 899999999877665211 112567
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 150 LATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 150 ~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.++|+.++++|++ .++.|+|++..+. .+..||+|||++||++||+.|++
T Consensus 162 ~~~n~~~~~~a~~----~~v~~iD~~~~~~--------~~~~Dg~Hpn~~G~~~~a~~i~~ 210 (216)
T 2q0q_A 162 TELARVYSALASF----MKVPFFDAGSVIS--------TDGVDGIHFTEANNRDLGVALAE 210 (216)
T ss_dssp TTHHHHHHHHHHH----HTCCEEEGGGTCC--------CCSTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCcEEchhHhcc--------cCCCCccCcCHHHHHHHHHHHHH
Confidence 8899999999998 8999999987763 25689999999999999999864
No 14
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=99.95 E-value=1.9e-28 Score=185.41 Aligned_cols=161 Identities=18% Similarity=0.237 Sum_probs=127.0
Q ss_pred CcEEEEccchhcccCcc--hhHHhh----cCC-cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--CC
Q psy1995 36 PELVFIGDSLISFLTQT--QIWHNL----FEP-LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--DS 106 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~--~~~~~~----~~~-~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~~ 106 (211)
.+|+|+|||+|+|++.. ..|... +.. ..+.|.|++|.++.+++.+++. .+...+||+|||++|+||.. .+
T Consensus 2 ~~i~~~GDSit~g~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~~~~~~~~~~~~-~~~~~~pd~Vii~~G~ND~~~~~~ 80 (190)
T 1ivn_A 2 DTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPA-LLKQHQPRWVLVELGGNDGLRGFQ 80 (190)
T ss_dssp EEEEEEECHHHHCSSSCGGGSHHHHHHHHC-CCEEEEECCCTTCCHHHHHHHHHH-HHHHHCCSEEEEECCTTTTSSSCC
T ss_pred CcEEEEecCcccCCCCCCCcCHHHHHHHHhccCcEEEecCCCCchHHHHHHHHHH-HHHhcCCCEEEEEeeccccccCCC
Confidence 47999999999998542 345433 332 6899999999999999999876 33346899999999999997 78
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCC
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLELL-PRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEI 185 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~-p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~ 185 (211)
++++.++++++++.+++. +++|+++++. |.... ......+|+.++++|++ .++.|+|++.......
T Consensus 81 ~~~~~~~l~~li~~~~~~--~~~vil~~~~~p~~~~----~~~~~~~n~~~~~~a~~----~~v~~iD~~~~~~~~~--- 147 (190)
T 1ivn_A 81 PQQTEQTLRQILQDVKAA--NAEPLLMQIRLPANYG----RRYNEAFSAIYPKLAKE----FDVPLLPFFMEEVYLK--- 147 (190)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCEEEEECCCCCGGGC----HHHHHHHHHHHHHHHHH----TTCCEECCTHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHc--CCCEEEEeccCCcchh----HHHHHHHHHHHHHHHHH----cCCeEEccHHhhccCC---
Confidence 899999999999999998 7899998862 32211 24578899999999998 7999999974332211
Q ss_pred ccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 186 SQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 186 ~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
...+..||+|||++||++||+.|++
T Consensus 148 ~~~~~~Dg~Hpn~~G~~~~a~~i~~ 172 (190)
T 1ivn_A 148 PQWMQDDGIHPNRDAQPFIADWMAK 172 (190)
T ss_dssp GGGBCTTSSSBCGGGHHHHHHHHHH
T ss_pred chhhcCCCCCCCHHHHHHHHHHHHH
Confidence 2234589999999999999998864
No 15
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=99.95 E-value=5.5e-28 Score=182.60 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=133.2
Q ss_pred CcEEEEccchhcccCcc---h----hHHhhcC-----CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCC
Q psy1995 36 PELVFIGDSLISFLTQT---Q----IWHNLFE-----PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNT 103 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~---~----~~~~~~~-----~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~ 103 (211)
++|+++|||+|+|++.. . .+.+.++ ...+.|.|++|.++.++..+++.... ..+||+|||++|+||.
T Consensus 2 ~~i~~~GDS~t~g~~~~~~~~~l~~~l~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~-~~~pd~vvi~~G~ND~ 80 (195)
T 1yzf_A 2 RKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVL-IEKPDEVVIFFGANDA 80 (195)
T ss_dssp EEEEEEESHHHHCBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHHHHHHHHTG-GGCCSEEEEECCTTTT
T ss_pred CeEEEEccccccCcCCCChHHHHHHHHHHhccccCCceEEEEeCCCCCCCHHHHHHHHHHhhh-hcCCCEEEEEeecccc
Confidence 47999999999997421 1 1223344 47899999999999999999886333 5799999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc--chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 104 E----DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI--NKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 104 ~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~--~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
. .+++++.+++.++++.++ +++|++++++|..... ...+..+..+|+.++++|++ .++.|+|++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~i~~~~----~~~vi~~~~~p~~~~~~~~~~~~~~~~~n~~~~~~a~~----~~~~~iD~~~~ 152 (195)
T 1yzf_A 81 SLDRNITVATFRENLETMIHEIG----SEKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAA----HNLPVIDLYKA 152 (195)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHC----GGGEEEECCCCCCTTTCTTSCHHHHHHHHHHHHHHHHH----TTCCEECHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCCCccccchhhhHHHHHHHHHHHHHHHHH----hCCeEEehHHH
Confidence 7 478999999999999997 7889999998876532 12346789999999999998 79999999988
Q ss_pred ccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 178 EIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 178 ~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+....+ ....++.||+|||++||+++|+.|.+
T Consensus 153 ~~~~~~-~~~~~~~Dg~Hp~~~G~~~~a~~i~~ 184 (195)
T 1yzf_A 153 MTVYPG-TDEFLQADGLHFSQVGYELLGALIVR 184 (195)
T ss_dssp HHHSTT-GGGGBCTTSSSBCHHHHHHHHHHHHH
T ss_pred HhhcCC-ccccccCCCCCcCHHHHHHHHHHHHH
Confidence 765432 23456799999999999999998864
No 16
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=99.94 E-value=6.1e-28 Score=186.29 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=119.1
Q ss_pred cCCCcEEEEccchhcccCcc--hhHHh----hc----CCcceE--------------EeccCCchhHHHHHHhhcCCCCC
Q psy1995 33 ESEPELVFIGDSLISFLTQT--QIWHN----LF----EPLHCL--------------AFGIGGDKVEHCLWRVQDGILDS 88 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~--~~~~~----~~----~~~~~~--------------n~g~~G~~~~~~~~~~~~~~~~~ 88 (211)
.++.+|+|+|||+|+|++.. ..|.. .+ ....++ |.|++|.++.+++.+++. .+..
T Consensus 3 ~~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~-~l~~ 81 (215)
T 2vpt_A 3 SKTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINN-WLNT 81 (215)
T ss_dssp -CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHH-HHHH
T ss_pred CCceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHH-Hhhc
Confidence 45679999999999998542 12332 11 112333 999999999999999876 3334
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHH----HHhCCCC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILA----DKLSPAP 164 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~----~~~~~~~ 164 (211)
.+||+|||++|+||.....+.+.+++.++++.+++..|+++|++++++|.... ...+|+.++ +.++.
T Consensus 82 ~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~p~~~ii~~~~~p~~~~-------~~~~n~~l~~~~~~~~~~-- 152 (215)
T 2vpt_A 82 HNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKPNVTLFVADYYPWPEA-------IKQYNAVIPGIVQQKANA-- 152 (215)
T ss_dssp HCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCTTCEEEEECCCSCSGG-------GHHHHTTHHHHHHHHHHT--
T ss_pred cCCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhCCCCEEEEEeCCCChHH-------HHHHHHHHHHHHHHHHhc--
Confidence 78999999999999861112235789999999999999999999998887532 233444443 33322
Q ss_pred CCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 165 LGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 165 ~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
..++.|+|++..+.+. ...++.||+|||++||++||+.|++
T Consensus 153 -~~~v~~iD~~~~~~~~----~~~~~~Dg~Hpn~~G~~~~a~~i~~ 193 (215)
T 2vpt_A 153 -GKKVYFVKLSEIQFDR----NTDISWDGLHLSEIGYKKIANIWYK 193 (215)
T ss_dssp -TCCEEEECGGGSCCCH----HHHBCTTSSSBCHHHHHHHHHHHHH
T ss_pred -CCCEEEEeccccccCc----cccccCCCCCcCHHHHHHHHHHHHH
Confidence 3899999999887543 2345699999999999999998864
No 17
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=99.94 E-value=7.1e-28 Score=192.62 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=131.7
Q ss_pred cCCCcEEEEccchhcccCcc----hhHHhhcC---CcceEEeccCCchhHHHHHHhhcCCCC--CCCCcEEEEEeccCCC
Q psy1995 33 ESEPELVFIGDSLISFLTQT----QIWHNLFE---PLHCLAFGIGGDKVEHCLWRVQDGILD--SIKPKVIVILVGTNNT 103 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~----~~~~~~~~---~~~~~n~g~~G~~~~~~~~~~~~~~~~--~~~pd~Vvi~~G~ND~ 103 (211)
....+|+++|||+|+|++.. ..| ..+. +..+.|.|++|.++.+++.+++. .+. ..+||+|+|++|+||.
T Consensus 24 ~~~~~iv~lGDSiT~G~~~~~~~~~~w-~~l~~~l~~~v~N~G~~G~tt~~~~~~~~~-~l~~~~~~pd~V~I~~G~ND~ 101 (274)
T 3bzw_A 24 WQGKKVGYIGDSITDPNCYGDNIKKYW-DFLKEWLGITPFVYGISGRQWDDVPRQAEK-LKKEHGGEVDAILVFMGTNDY 101 (274)
T ss_dssp TTTCEEEEEESTTTCTTTTGGGCCCHH-HHHHHHHCCEEEECCCTTCCGGGHHHHHHH-HHHHHTTTCCEEEEECCHHHH
T ss_pred CCCCEEEEEecCcccCCCCCCccCccH-HHHHHHhCCeEEEeecCCCCHHHHHHHHHH-HHhccCCCCCEEEEEEecccC
Confidence 35579999999999998543 346 3332 47899999999999999888765 442 2789999999999997
Q ss_pred CC-----------------------------------CHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc------
Q psy1995 104 ED-----------------------------------SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI------ 142 (211)
Q Consensus 104 ~~-----------------------------------~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~------ 142 (211)
.. ++++|.++++++|+.+++++|+++|++++++|.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~~ 181 (274)
T 3bzw_A 102 NSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYRGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKNV 181 (274)
T ss_dssp HTTCCCCCSEEEEEEEEEEEESSCCEEEEEEEEEECCCSSSHHHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTEE
T ss_pred cccCCCccccccchhhhhcccchhhcccccccccccCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecccccccccccccc
Confidence 61 1246899999999999999999999999987765311
Q ss_pred ch-------hhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcccc-ccCC-CCccCC---CCCCCCCCHHHHHHHhhhhh
Q psy1995 143 NK-------LWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI-ISKD-EISQGD---FYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 143 ~~-------~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~-~~~~-~~~~~~---~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
.+ ....+..+|+.++++|++ .++.|||++..+. +... .....+ ..||+|||++||++||+.|.
T Consensus 182 ~p~~~~~~~~~~~~~~~n~~i~~~a~~----~~v~~vD~~~~~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~iA~~i~ 256 (274)
T 3bzw_A 182 QPDESYQNGCGEYIDAYVQAIKEAGNI----WGIPVIDFNAVTGMNPMVEEQLIYFYDAGYDRLHPDTKGQERMARTLM 256 (274)
T ss_dssp ECCTTBCCTTSCCHHHHHHHHHHHHHH----HTCCEECHHHHTCCCTTSGGGGGGEEETTTEEEEECHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHH----cCCCEEcchhhhccCccccccccccccCCCCCcCCCHHHHHHHHHHHH
Confidence 00 123478999999999998 8999999998775 2221 111222 48999999999999999885
No 18
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=99.94 E-value=7.3e-28 Score=188.41 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=124.8
Q ss_pred CcEEEEccchhcccCc---chhHHhhcC---CcceEEeccCCchhHHHHH--HhhcCCCCCCCC-cEEEEEeccCCCCCC
Q psy1995 36 PELVFIGDSLISFLTQ---TQIWHNLFE---PLHCLAFGIGGDKVEHCLW--RVQDGILDSIKP-KVIVILVGTNNTEDS 106 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~---~~~~~~~~~---~~~~~n~g~~G~~~~~~~~--~~~~~~~~~~~p-d~Vvi~~G~ND~~~~ 106 (211)
.+|+++|||+|+|... ...|...+. +..++|+|++|.++..++. +++. .+...+| |+|||++|+||....
T Consensus 1 ~~I~~~GDS~t~g~~~~~~~~gw~~~l~~~l~~~v~N~gi~G~tt~~~~~~~r~~~-~l~~~~~~d~ViI~~G~ND~~~~ 79 (233)
T 1k7c_A 1 TTVYLAGDSTMAKNGGGSGTNGWGEYLASYLSATVVNDAVAGRSARSYTREGRFEN-IADVVTAGDYVIVEFGHNDGGSL 79 (233)
T ss_dssp CEEEEECCTTTSTTTTSTTCCCGGGGSGGGBSSEEEECCCTTCCHHHHHHTTHHHH-HHHHCCTTCEEEECCCTTSCSCG
T ss_pred CEEEEEecCCCcCCCCCCCCCCHHHHHHHhCCceEEecccCCccHHHHHHcccHHH-HHhhCCCCCEEEEEccCCCCCCc
Confidence 3799999999999642 234654433 2789999999999998764 5654 4433444 999999999998731
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc-hhhHHHHHHHHHHHH
Q psy1995 107 ---------------------------AENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN-KLWTKNLATNQILAD 158 (211)
Q Consensus 107 ---------------------------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~-~~~~~~~~~n~~l~~ 158 (211)
.++|.++++++++.+++. ++++|+++++|...... ........+++++++
T Consensus 80 ~~~~~r~~~~g~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~ 157 (233)
T 1k7c_A 80 STDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAK--GAKVILSSQTPNNPWETGTFVNSPTRFVEYAEL 157 (233)
T ss_dssp GGCCSCCCBSSSSSCEEEEEETTEEEEEEBHHHHHHHHHHHHHHT--TCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHH
T ss_pred CCcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHC--CCEEEEECCCCccccCCCccccchHHHHHHHHH
Confidence 358999999999999987 78999999887653211 111234578899999
Q ss_pred HhCCCCCCCCeEEEeCCcccccc---CCC-CccCC-CCCCCCCCHHHHHHHhhhhhc
Q psy1995 159 KLSPAPLGPKVHLIQHNKDEIIS---KDE-ISQGD-FYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 159 ~~~~~~~~~~v~~iD~~~~~~~~---~~~-~~~~~-~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
+|++ .+++|||++..+... .+. ....+ ..||+|||++||++||+.|++
T Consensus 158 vA~~----~~v~~iD~~~~~~~~~~~~g~~~~~~~~~~DgiHpn~~G~~~iA~~i~~ 210 (233)
T 1k7c_A 158 AAEV----AGVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPAGAEVVAEAFLK 210 (233)
T ss_dssp HHHH----HTCEEECHHHHHHHHHHHHCHHHHHHTCSSSSSCCCHHHHHHHHHHHHH
T ss_pred HHHH----hCCeEEecHHHHHHHHHHhChhhhcccCCCCCCCCCHHHHHHHHHHHHH
Confidence 9998 899999999776421 110 01224 489999999999999999874
No 19
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=99.92 E-value=1.9e-25 Score=186.07 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=124.1
Q ss_pred CCCcEEEEccchhcccCc---chhHHhhcC---CcceEEeccCC-chh-HHHHHHhhcCCCCCCCCcEEEEEeccCCCC-
Q psy1995 34 SEPELVFIGDSLISFLTQ---TQIWHNLFE---PLHCLAFGIGG-DKV-EHCLWRVQDGILDSIKPKVIVILVGTNNTE- 104 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~---~~~~~~~~~---~~~~~n~g~~G-~~~-~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~- 104 (211)
.+.+|+|+|||+|+|++. ...|..++. +..++|.|++| .+. .....++. ...+||+|||++|+||..
T Consensus 184 ~~~~Iv~~GDSiT~G~g~~~~~~~w~~~la~~l~~~viN~GisG~~~~~~~~~~~~l----~~~~pdlVvI~lGtND~~~ 259 (385)
T 3skv_A 184 SKPHWIHYGDSICHGRGAASPSRTWLALAARAEGLDLQSLSFAADGSHLQPMFARLI----RDLPADLISLRVGTSNFMD 259 (385)
T ss_dssp CCCEEEEEECSSCTTTTCSSGGGSHHHHHHHHHTCEEEEECCTGGGGSCCHHHHHHH----HHSCCSEEEEEESHHHHTT
T ss_pred CCceEEEEeccccCCCCCCCCCCCHHHHHHHhcCCcEEEeecCCCcccHHHHHHHHH----hccCCCEEEEEeeccCCCC
Confidence 467899999999999864 245654432 57899999999 422 22333322 235899999999999987
Q ss_pred -CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC--C-ccc----hhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCc
Q psy1995 105 -DSAENIADGILELIRLVQTKQPQADVVVLELLPRG--K-LIN----KLWTKNLATNQILADKLSPAPLGPKVHLIQHNK 176 (211)
Q Consensus 105 -~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~--~-~~~----~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~ 176 (211)
.+++++.+++.++|+.+++.+|+++|++++++|.. . .+. ........+++.+++++++ ...++.|+|...
T Consensus 260 ~~~~~~~~~~l~~li~~ir~~~P~a~Illv~p~~~P~~~~~p~~~~~~l~~~~~~l~~~~~~lA~~--g~~~v~~vd~~~ 337 (385)
T 3skv_A 260 GDGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELPADDKPTVADYREQVVKVAELLRKH--GDQNVHYLDGMR 337 (385)
T ss_dssp TCCTTTHHHHHHHHHHHHHTTCSSSCEEEEECCCCTTTTTSCCTTSCCHHHHHHHHHHHHHHHHHT--TCTTEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCcEEEEcCCCCcccccCCccchhhHHHHHHHHHHHHHHHHhc--CCCCEEEEecHH
Confidence 67889999999999999999999999999987642 1 111 1234456666677776652 127999999876
Q ss_pred cccccCCCC--ccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 177 DEIISKDEI--SQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 177 ~~~~~~~~~--~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.+...++.. ...++.||+|||++||++||+.|++
T Consensus 338 l~~~~~~~~~~~~l~~~DGlHPn~~Gy~~mA~~l~~ 373 (385)
T 3skv_A 338 VWGPERGMELYLEKPDKYPTHPNAVGHEIFAESSRR 373 (385)
T ss_dssp HSCTTCCGGGBCSCTTSCCCSBCHHHHHHHHHHHHH
T ss_pred HcCcccccccccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 554322111 1235699999999999999999864
No 20
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=99.92 E-value=1.3e-25 Score=187.10 Aligned_cols=169 Identities=19% Similarity=0.187 Sum_probs=128.0
Q ss_pred CCcEEEEccchhcc-cCc----chhHHhhc----CC--cceEEeccCCchhHHHHH--HhhcCCCCCCCC-cEEEEEecc
Q psy1995 35 EPELVFIGDSLISF-LTQ----TQIWHNLF----EP--LHCLAFGIGGDKVEHCLW--RVQDGILDSIKP-KVIVILVGT 100 (211)
Q Consensus 35 ~~~il~iGDS~t~g-~~~----~~~~~~~~----~~--~~~~n~g~~G~~~~~~~~--~~~~~~~~~~~p-d~Vvi~~G~ 100 (211)
..+|+++|||+|+| ++. ...|...+ .. ..+.|.|++|.++.+++. +++. .+...+| |+|||++|+
T Consensus 162 ~~~Iv~lGDSiT~G~~g~~~~~~~~w~~~L~~~L~~~~~~v~N~GisG~tt~~~l~~~rl~~-~l~~~~p~d~VvI~~G~ 240 (375)
T 2o14_A 162 NRTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRNDGQLEA-ILKYIKPGDYFMLQLGI 240 (375)
T ss_dssp CCEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTTCEEEECCCTTCCHHHHHHSSHHHH-HHTTCCTTCEEEEECCT
T ss_pred CcEEEEecCccccCCcCCCCCCCCCHHHHHHHHhccCCceEEEeccCCCcHhhhhhcccHHH-HHHhCCCCCEEEEEEEc
Confidence 45999999999999 642 23465433 22 358999999999988874 6654 3445788 999999999
Q ss_pred CCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC-c-c-chhhHHHHHHHHHHHHHhCCCCCCCCeEEEe
Q psy1995 101 NNTE----DSAENIADGILELIRLVQTKQPQADVVVLELLPRGK-L-I-NKLWTKNLATNQILADKLSPAPLGPKVHLIQ 173 (211)
Q Consensus 101 ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~-~-~-~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD 173 (211)
||.. .+++++.++++++|+.++++ +++||+++++|... . . .........+|+.++++|++ .++.|||
T Consensus 241 ND~~~~~~~~~~~~~~~l~~ii~~lr~~--~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~----~~v~~iD 314 (375)
T 2o14_A 241 NDTNPKHKESEAEFKEVMRDMIRQVKAK--GADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEE----EKTYLID 314 (375)
T ss_dssp GGGCGGGCCCHHHHHHHHHHHHHHHHTT--TCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHH----TTCEEEC
T ss_pred cCCCccCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHH----cCCeEEe
Confidence 9997 37899999999999999988 78999998776543 1 1 11123467788999999988 8999999
Q ss_pred CCcccccc---CCC--CccCC-CCCCCCCCHHHHHHHhhhhhc
Q psy1995 174 HNKDEIIS---KDE--ISQGD-FYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 174 ~~~~~~~~---~~~--~~~~~-~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++..+.+. .+. ....+ ..||+|||++||++||+.|++
T Consensus 315 l~~~~~~~~~~~g~~~~~~~~~~~DgvHpn~~G~~~~A~~i~~ 357 (375)
T 2o14_A 315 LNVLSSAYFTSIGPERTLGLYMDGDTLHPNRAGADALARLAVQ 357 (375)
T ss_dssp HHHHHHHHHHHHCHHHHHTTBCTTCSSSBBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCcccchhhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 99876431 110 12334 379999999999999999864
No 21
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=99.91 E-value=7.1e-25 Score=177.99 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=126.4
Q ss_pred CCCcEEEEccchhcccCcc----------------hhHHhh----cC-----CcceEEeccCCchhHHHHHHh-------
Q psy1995 34 SEPELVFIGDSLISFLTQT----------------QIWHNL----FE-----PLHCLAFGIGGDKVEHCLWRV------- 81 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~----------------~~~~~~----~~-----~~~~~n~g~~G~~~~~~~~~~------- 81 (211)
.+.++|++|||+|+|++.. ..|..+ +. ...+.|.|++|.++.+++.+.
T Consensus 4 ~~~~~valGDS~taG~g~~~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~~~~n~a~sG~tt~~~~~~~~~~~~~~ 83 (306)
T 1esc_A 4 DPVPTVFFGDSYTANFGIAPVTNQDSERGWCFQAKENYPAVATRSLADKGITLDVQADVSCGGALIHHFWEKQELPFGAG 83 (306)
T ss_dssp CEEEEEECCSHHHHTTTCSSBTTTTSGGGGGTCBTTCHHHHHHHHHHTTTCEEEEEEECCCTTCCGGGGTSCEECGGGCC
T ss_pred CcceEEEECchhhhCCCCCCCCCCcCCCCCCcCCccCHHHHHHHHhccccCCcceEEEeeccCccccccccccccccccc
Confidence 4468999999999998532 224322 22 267899999999999987642
Q ss_pred ----hcCCCCCCCCcEEEEEeccCCCC-C-------C-----------H---------------------------HHHH
Q psy1995 82 ----QDGILDSIKPKVIVILVGTNNTE-D-------S-----------A---------------------------ENIA 111 (211)
Q Consensus 82 ----~~~~~~~~~pd~Vvi~~G~ND~~-~-------~-----------~---------------------------~~~~ 111 (211)
+...+ ..+||+|+|++|+||+. . . + +++.
T Consensus 84 ~~~~ql~~l-~~~~dlV~i~iGgND~~~~~~~~~c~~~~~~~~~~~~~p~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 162 (306)
T 1esc_A 84 ELPPQQDAL-KQDTQLTVGSLGGNTLGFNRILKQCSDELRKPSLLPGDPVDGDEPAAKCGEFFGTGDGKQWLDDQFERVG 162 (306)
T ss_dssp EECCGGGGC-CTTCCEEEECCCHHHHTHHHHHHHTCTTTTSSCSSCCCCSSTTSCGGGHHHHTTTSHHHHHHHHHHHHHH
T ss_pred cchhHHHhc-cCCCCEEEEEecCCcccHHHHHHHHhccccccccccCCcccccccCCcchhhhhcccchHHHHHHHHHHH
Confidence 11123 35899999999999984 1 1 1 1388
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCCc------------------------cchhhHHHHHHHHHHHHHhCCCCCCC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGKL------------------------INKLWTKNLATNQILADKLSPAPLGP 167 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~------------------------~~~~~~~~~~~n~~l~~~~~~~~~~~ 167 (211)
.++.++++.|+++.|+++|+++++++.... ....+..+..+|+.+++.|++ .
T Consensus 163 ~~l~~il~~ir~~~p~a~I~lvgyp~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~A~~----~ 238 (306)
T 1esc_A 163 AELEELLDRIGYFAPDAKRVLVGYPRLVPEDTTKCLTAAPGQTQLPFADIPQDALPVLDQIQKRLNDAMKKAAAD----G 238 (306)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCCCCSCSCGGGGGSCCTTCSSCTTTTCCTTTHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCChhccCCCCCCCcCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence 899999999999999999999986543210 011345789999999999998 8
Q ss_pred CeEEEeCCccccccCC-----CCccCC------------CCCCCCCCHHHHHHHhhhhhc
Q psy1995 168 KVHLIQHNKDEIISKD-----EISQGD------------FYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 168 ~v~~iD~~~~~~~~~~-----~~~~~~------------~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++.|||++..|...+. .+...+ ..|++|||++||+.||+.|.+
T Consensus 239 g~~~vD~~~~f~~~~~c~~~~~w~~~~~~~~~~~~~~~~~~d~~HPn~~G~~~iA~~v~~ 298 (306)
T 1esc_A 239 GADFVDLYAGTGANTACDGADRGIGGLLEDSQLELLGTKIPWYAHPNDKGRDIQAKQVAD 298 (306)
T ss_dssp TCEEECTGGGCTTSSTTSTTSCSBCCSSSEEEEESSSCEEECSSCBCHHHHHHHHHHHHH
T ss_pred CCEEEeCcccccCCCCCCCchhhhhcccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 9999999988754331 111111 269999999999999999864
No 22
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=99.89 E-value=2.9e-23 Score=170.93 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=108.3
Q ss_pred CCCcEEEEccchhcccCcc----------------hhHHhhcC---CcceEE-----------eccCCchhHHHHHHhhc
Q psy1995 34 SEPELVFIGDSLISFLTQT----------------QIWHNLFE---PLHCLA-----------FGIGGDKVEHCLWRVQD 83 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~----------------~~~~~~~~---~~~~~n-----------~g~~G~~~~~~~~~~~~ 83 (211)
...+|+|+|||||+|++.. ..|..... +..+.+ .|.+|.+ .+..++++
T Consensus 121 ~~~~I~~iGDSiT~G~g~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~~~~sG~~~~~n~g~~g~~--~~~~~~~~ 198 (341)
T 2wao_A 121 LERKIEFIGDSITCAYGNEGTSKEQSFTPKNENSYMSYAAITARNLNASANMIAWSGIGLTMNYGGAPGP--LIMDRYPY 198 (341)
T ss_dssp CSEEEEEEESHHHHTTTTTCCCTTSCCCGGGCCGGGSHHHHHHHHTTEEEEEEECTTCCSSCCGGGCCCC--CHHHHTTE
T ss_pred CCceEEEEccccccCCCccCCCcCCCCCcccccchhhhHHHHHHHhCCceeEEeeccceEEecCCCCCCC--ChhHHhhh
Confidence 5578999999999998432 23442221 122333 3333322 33444332
Q ss_pred CC--------CCCCCCcEEEEEeccCCCC---CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHH
Q psy1995 84 GI--------LDSIKPKVIVILVGTNNTE---DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLAT 152 (211)
Q Consensus 84 ~~--------~~~~~pd~Vvi~~G~ND~~---~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~ 152 (211)
.. +...+||+|||++|+||+. ...+++.+++.++|+.+++++|+++|+++++++... + ........+
T Consensus 199 ~~~~~~~~~d~~~~~PdlVvI~lGtND~~~~~~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~~-~-~~~~~~~~i 276 (341)
T 2wao_A 199 TLPYSGVRWDFSKYVPQVVVINLGTNDFSTSFADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWG-T-GLDLCRSYV 276 (341)
T ss_dssp EETTTTEECCGGGCCCSEEEEECCHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECSSCCH-H-HHHHHHHHH
T ss_pred ccCCCcccccccCCCCCEEEEeCccccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcCC-c-hhhHHHHHH
Confidence 11 1247899999999999998 235899999999999999999999999998644432 1 111122334
Q ss_pred HHHHHHHh--CCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 153 NQILADKL--SPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 153 n~~l~~~~--~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
++..++++ .+ .++.|+|+...+. ..++.||+|||++||++||+.|++
T Consensus 277 ~~~~~~~~~a~~----~~v~~vD~~~~~~-------~~~~~DglHPn~~G~~~mA~~l~~ 325 (341)
T 2wao_A 277 TEVVNDCNRSGD----LKVYFVEFPQQDG-------STGYGEDWHPSIATHQLMAERLTA 325 (341)
T ss_dssp HHHHHHHHHTTC----CSEEEEECCCCCS-------TTCCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CcEEEEEcccccC-------ccCcCCCCCcCHHHHHHHHHHHHH
Confidence 44444443 34 7999999976541 234589999999999999999864
No 23
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=99.87 E-value=6.5e-22 Score=163.21 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCCCcEEEEEeccCCCC---CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCC
Q psy1995 88 SIKPKVIVILVGTNNTE---DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAP 164 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~---~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~ 164 (211)
..+||+|||++|+||.. ...++|.+++.++|+.+++++|+++|+++++++. ..+. .......+++.++++ ..
T Consensus 223 ~~~Pd~VvI~lG~ND~~~~~~~~~~~~~~l~~li~~ir~~~p~~~I~l~~~p~~-~~~~-~~~~~~~i~~~~~~~-~~-- 297 (347)
T 2waa_A 223 RYQPDLIISAIGTNDFSPGIPDRATYINTYTRFVRTLLDNHPQATIVLTEGAIL-NGDK-KAALVSYIGETRQQL-HS-- 297 (347)
T ss_dssp GCCCSEEEECCCHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSSC-CHHH-HHHHHHHHHHHHHHH-CC--
T ss_pred cCCCCEEEEEccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCcc-CCch-hhHHHHHHHHHHHHh-CC--
Confidence 46899999999999997 2457999999999999999999999999986332 2111 112234444444444 33
Q ss_pred CCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 165 LGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 165 ~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.++.|+|+.... . .. ||+|||++||++||+.|++
T Consensus 298 --~~v~~id~~~~~-~------~~---DglHPn~~G~~~~A~~l~~ 331 (347)
T 2waa_A 298 --NRVFYASSSHHP-G------DN---SDAHPTKDQHAAMARELTP 331 (347)
T ss_dssp --TTEEECCCCCCC-C------BT---TBSSCCHHHHHHHHHHHHH
T ss_pred --CCEEEEEccCcC-C------CC---CCCCcCHHHHHHHHHHHHH
Confidence 789999987542 1 11 9999999999999999864
No 24
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=99.85 E-value=7.4e-21 Score=157.94 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCCCcEEEEEeccCCCC--CC-----------HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHH
Q psy1995 88 SIKPKVIVILVGTNNTE--DS-----------AENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQ 154 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~--~~-----------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~ 154 (211)
..+||+|||++|+||+. .. .+++.+++.++|+.+|+++|+++|+++++ |... ..+.+.+.++.+
T Consensus 234 ~~~Pd~VvI~lGtND~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ir~~~p~a~Iil~~p-p~~~--~~~~~~i~~~~~ 310 (366)
T 2w9x_A 234 HWKPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNNARAQFILMNS-DQSN--GEIAEQVGKVVA 310 (366)
T ss_dssp TCCCSEEEEECCHHHHSSCCCTTSSCCSHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE-SCGG--GHHHHHHHHHHH
T ss_pred cCCCCEEEEeCccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHCCCCeEEEEeC-CCcC--chHHHHHHHHHH
Confidence 36899999999999976 22 47899999999999999999999999985 3331 123333444444
Q ss_pred HHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995 155 ILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210 (211)
Q Consensus 155 ~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 210 (211)
.+++ +.. .++.|+|+.. ..++.|++|||++||++||+.|.+
T Consensus 311 ~~~~-~~~----~~v~~vd~~~----------~~~~~dd~HPn~~G~~~mA~~l~~ 351 (366)
T 2w9x_A 311 QLKG-GGL----HQVEQIVFKG----------LDYSGCHWHPSANDDQLLANLLIT 351 (366)
T ss_dssp HHHH-TTC----CCEEEEEECC----------CCCCBGGGBCCHHHHHHHHHHHHH
T ss_pred HHHh-cCC----CcEEEEEccC----------CCCCCCCCCcCHHHHHHHHHHHHH
Confidence 4443 334 7999999751 133567799999999999999864
No 25
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=99.15 E-value=4.9e-11 Score=94.51 Aligned_cols=172 Identities=12% Similarity=0.083 Sum_probs=113.8
Q ss_pred hcCCCcEEEEccchhcccCcchhHHhhc----CCcceEEeccCCchhHHHHHHhhcC-----------------------
Q psy1995 32 KESEPELVFIGDSLISFLTQTQIWHNLF----EPLHCLAFGIGGDKVEHCLWRVQDG----------------------- 84 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~~~~~~~~----~~~~~~n~g~~G~~~~~~~~~~~~~----------------------- 84 (211)
+.+..+|||||.|+| .-.....+.++. ....+.+.-++|.+...-.+.....
T Consensus 7 ~~~~~rVL~IGNS~t-~n~~p~~l~~la~a~g~~~~v~~~~igG~~L~~H~~~~~~~~~~~~y~k~~~~g~~~~~~~~~~ 85 (271)
T 4i8i_A 7 NNDTIKVLAIGNSFS-QDAVEQYLHELGEAEGITMIIGNMFIGGCSLERHVQNIRNNAPAYAYRKVEKDGEKTETRSMTI 85 (271)
T ss_dssp --CEEEEEEEESHHH-HHHHSSSHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHTTCCCEEEEEECTTSCEEEEEEECH
T ss_pred CCCCeEEEEECCCCC-cCcHHHHHHHHHHhcCCceEEEEEecCCccHHHHHhccccccccccccccccCCccccccchhH
Confidence 456789999999999 321112233332 2344557888898887666554320
Q ss_pred --CCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhC-CCCeEEEEeccCCCCcc---------chhhHHHHHH
Q psy1995 85 --ILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQ-PQADVVVLELLPRGKLI---------NKLWTKNLAT 152 (211)
Q Consensus 85 --~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~-p~~~ii~~~~~p~~~~~---------~~~~~~~~~~ 152 (211)
.+...+.|+||+.-++.-. ..++.+...+.++++.+|+.. |++++++..+-+..... ....+....+
T Consensus 86 ~~~L~~~~wD~VilQe~S~~~-~~~~~~~~~~~~l~~~ir~~~~p~ak~il~~TWa~~~~~~~~~f~~~~~~~~~m~~~l 164 (271)
T 4i8i_A 86 EKALADEKWDYISVQQASPLS-GIYDSYKASLPELVNYIRERIGKETVLMMHQTWAYATNANHTGFKNYDQNQMKMYTSI 164 (271)
T ss_dssp HHHHHHSCCSEEEECCCGGGT-TCHHHHHHHHHHHHHHHHTTSCTTCEEEEEECCCCCTTCCCGGGGGGTTCHHHHHHHH
T ss_pred HHHhhcCCCCEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHhhcCCCCEEEEEeccCCCCCCCcccccccCccHHHHHHHH
Confidence 1123679999997766433 357889999999999999999 99999998775544322 1112345566
Q ss_pred HHHHHHHhCCCCCCCCe-EEEeCCccccccC-CCCccCCCCCCCCCCH-HHHHHHhhhhh
Q psy1995 153 NQILADKLSPAPLGPKV-HLIQHNKDEIISK-DEISQGDFYDYLHLTE-SGYRKVFTPVY 209 (211)
Q Consensus 153 n~~l~~~~~~~~~~~~v-~~iD~~~~~~~~~-~~~~~~~~~Dg~Hpn~-~G~~~~a~~l~ 209 (211)
....++.+.+ .++ .+++....|.... ......++.||+|||+ .|.-+.|-.++
T Consensus 165 ~~ay~~~a~~----~~~~~viPvG~a~~~~~~~~p~~~l~~Dg~Hps~~~GsYLaA~v~y 220 (271)
T 4i8i_A 165 VDAVKKAANL----VGIKKIIPSGTAIQNARTSFIGDHMNRDGYHLDLTIGRYTAACTWF 220 (271)
T ss_dssp HHHHHHHHHH----HTCCEEEEHHHHHHHHHHSTTCSCCBSSSSSBCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCEEeeHHHHHHHHHHhCcCccccCCCCCCCCccCHHHHHHHHH
Confidence 6777777765 576 7898887663210 1112245599999999 99998887654
No 26
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=98.88 E-value=1.6e-09 Score=95.70 Aligned_cols=119 Identities=21% Similarity=0.094 Sum_probs=84.1
Q ss_pred CCCcEEEEEeccCCCC----CC---HHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccc--------hhhHHHHHHH
Q psy1995 89 IKPKVIVILVGTNNTE----DS---AENIADGILELIRLVQTKQPQADVVVLELLPRGKLIN--------KLWTKNLATN 153 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~----~~---~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~--------~~~~~~~~~n 153 (211)
..-.+++|++|+||+. .. .+.+...+.+.|+.+.+. ...+|+|++++|..+.|. ..+.....+|
T Consensus 145 ~~~sL~~v~iG~ND~~~~~~~~~~~~~~~v~~~~~~v~~L~~~-Gar~~~v~~~pp~gc~P~~~~~~c~~~~n~~~~~~N 223 (632)
T 3kvn_X 145 DPNALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQALQQA-GARYIVVWLLPDLGLTPATFGGPLQPFASQLSGTFN 223 (632)
T ss_dssp CTTSEEEECCSHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHT-TCCCEEEECCCCGGGSTTTTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEEEechhhhcccccChHHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccCCCchHHHHHHHHHHH
Confidence 3567899999999974 22 345677778888888876 234788888888766552 2345688899
Q ss_pred HHHHHHhCCCCCCCCeEEEeCCccccc----------cC--------------------------CCCccCCCCCCCCCC
Q psy1995 154 QILADKLSPAPLGPKVHLIQHNKDEII----------SK--------------------------DEISQGDFYDYLHLT 197 (211)
Q Consensus 154 ~~l~~~~~~~~~~~~v~~iD~~~~~~~----------~~--------------------------~~~~~~~~~Dg~Hpn 197 (211)
..|++.+.+. ..++.|+|.+..+.+ .+ .+....++.|++|||
T Consensus 224 ~~L~~~l~~l--~~~i~~~D~y~~~~~~~~np~~yGf~~~~~~~~cCg~g~~C~~~~~~~~~~~C~~~~~y~fwD~~HpT 301 (632)
T 3kvn_X 224 AELTAQLSQA--GANVIPLNIPLLLKEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPT 301 (632)
T ss_dssp HHHHHHHHHH--CCCEEEECHHHHHHHHHHCGGGGTCCTTSCTTTCBSSCTTSCBCTTTSTTSSSCCGGGCSBSSSSCBC
T ss_pred HHHHHHHHhC--CCeEEEEEcHHHHHHHHhCHHhcCCCcCCCCccccCCCCccCCcccccccccCCCccceEEecCCCCH
Confidence 9999988752 147999999866421 00 011233458999999
Q ss_pred HHHHHHHhhhhhc
Q psy1995 198 ESGYRKVFTPVYE 210 (211)
Q Consensus 198 ~~G~~~~a~~l~~ 210 (211)
+++|+++|+.+++
T Consensus 302 e~~~~~ia~~~~~ 314 (632)
T 3kvn_X 302 ITGQRLIADYTYS 314 (632)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 27
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7
Probab=98.47 E-value=7.8e-07 Score=71.09 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=96.7
Q ss_pred cceEEeccCCchhHH----------HHHHhhcCCCCCCCCcEEEEEeccCCCCC-CHHHHHHHHHHHHHHHHhhC--CCC
Q psy1995 62 LHCLAFGIGGDKVEH----------CLWRVQDGILDSIKPKVIVILVGTNNTED-SAENIADGILELIRLVQTKQ--PQA 128 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~----------~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~-~~~~~~~~~~~~i~~i~~~~--p~~ 128 (211)
+.+++.++||..... ++.+... .+..+.+..|+..-|-+|... +++.|.+.+..|++.+|+.+ |+.
T Consensus 73 VGlI~~a~GGT~Ie~W~~~~~ly~~~l~~~~~-a~~~~~ikGvlWyQGEsd~~~~~~~~Y~~~l~~lI~~wR~~~~~~~l 151 (290)
T 1zmb_A 73 IGLIPCAEGGSSIDEWALDGVLFRHALTEAKF-AMESSELTGILWHQGESDSLNGNYKVYYKKLLLIIEALRKELNVPDI 151 (290)
T ss_dssp EEEEECCCTTCCGGGGCTTSHHHHHHHHHHHH-HHTSSEEEEEEEECCGGGSSSSCSTTHHHHHHHHHHHHHHHTTCSSS
T ss_pred EEEEEccCCCeeHHHhCCCcccHHHHHHHHHH-hccCCCeeEEEEEecCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456788888876542 2333332 222577899999999999973 47899999999999999988 889
Q ss_pred eEEEEeccCCCCccchhh---HHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHh
Q psy1995 129 DVVVLELLPRGKLINKLW---TKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVF 205 (211)
Q Consensus 129 ~ii~~~~~p~~~~~~~~~---~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a 205 (211)
++++..+.|... ..... .....++++.++.+.. .+++.+++..+... ..|++|||..|++.++
T Consensus 152 Pf~~vql~~~~~-~~~~~~~~~~~~~ireaQ~~~~~~---~pn~~~v~t~dl~~----------~~d~iHp~~~~k~~vG 217 (290)
T 1zmb_A 152 PIIIGGLGDFLG-KERFGKGCTEYNFINKELQKFAFE---QDNCYFVTASGLTC----------NPDGIHIDAISQRKFG 217 (290)
T ss_dssp CEEEECCCTTTT-TSGGGTTCTTHHHHHHHHHHHHHH---STTEEEECCTTCCB----------CTTSSSBCHHHHHHHH
T ss_pred CEEEEEcCCcCC-CCccccccchHHHHHHHHHHHHHh---CCCEEEEEcCCCCC----------CCCCcCCCchHHHHHH
Confidence 999988766542 11111 1246777777777655 58999988754321 2589999999999999
Q ss_pred hhhhc
Q psy1995 206 TPVYE 210 (211)
Q Consensus 206 ~~l~~ 210 (211)
++++.
T Consensus 218 ~RlA~ 222 (290)
T 1zmb_A 218 LRYFE 222 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 28
>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7
Probab=97.60 E-value=0.00089 Score=52.49 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=86.5
Q ss_pred CcceEEeccCCchhHH----------HHHHhhcCCCC-CCCCcEEEEEeccCCCCC--CHHHHHHHHHHHHHHHHhhC--
Q psy1995 61 PLHCLAFGIGGDKVEH----------CLWRVQDGILD-SIKPKVIVILVGTNNTED--SAENIADGILELIRLVQTKQ-- 125 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~----------~~~~~~~~~~~-~~~pd~Vvi~~G~ND~~~--~~~~~~~~~~~~i~~i~~~~-- 125 (211)
.+.+++.++||..... ++.+.+. .+. .+...-|+.+-|-+|... +++.|.+.+..||+..|+.+
T Consensus 112 pVglI~~A~GGt~i~~W~~~~~ly~~~i~~~~~-al~~~~~ikGvlWyQGEsn~~~~~~~~~Y~~~l~~lI~~wR~~~~~ 190 (260)
T 2apj_A 112 VIGLVPCASGGTAIKEWERGSHLYERMVKRTEE-SRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNL 190 (260)
T ss_dssp CEEEEECCCTTCCGGGGSTTSHHHHHHHHHHHH-HGGGSCEEEEEEEECCGGGSSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEeCCCCCcHHHHCCCcchHHHHHHHHHH-hhccCCceEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence 3557888888876643 2333221 121 367788999999999873 27899999999999999976
Q ss_pred CCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHh
Q psy1995 126 PQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVF 205 (211)
Q Consensus 126 p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a 205 (211)
|+.++++..+.+.... ...+.++-++ + . .+++.++.....- ...|++||+.+|++.++
T Consensus 191 ~~lPf~~vql~~~~~~-------~~~iReaQ~~-~-~---~pn~~~v~t~dlg----------~~~D~iHp~~k~~~~vG 248 (260)
T 2apj_A 191 PSLPIIQVAIASGGGY-------IDKVREAQLG-L-K---LSNVVCVDAKGLP----------LKSDNLHLTTEAQVQLG 248 (260)
T ss_dssp TTCCEEEEECSCCCTT-------HHHHHHHHHH-C-C---CTTEEEEECTTSC----------BCTTSSSBCHHHHHHHH
T ss_pred CCCCEEEEEeccccch-------HHHHHHHHHh-c-c---CCCeEEEEccCCC----------CCCCCcCCCcHHHHHHH
Confidence 5788898887654321 1222222222 3 3 4899888764321 12588999999999999
Q ss_pred hhhhc
Q psy1995 206 TPVYE 210 (211)
Q Consensus 206 ~~l~~ 210 (211)
++++.
T Consensus 249 ~RlA~ 253 (260)
T 2apj_A 249 LSLAQ 253 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 29
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=95.72 E-value=0.034 Score=46.12 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccCCCC-cc---chhhHHHHHHHHHHHHHhCCCCCCCCe-EEEeCCccccccCCCC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLPRGK-LI---NKLWTKNLATNQILADKLSPAPLGPKV-HLIQHNKDEIISKDEI 185 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~-~~---~~~~~~~~~~n~~l~~~~~~~~~~~~v-~~iD~~~~~~~~~~~~ 185 (211)
..+++-+|+.+++. ++.++++.+ |++. .. ....+....+-+.|+..|++ .|+ .++|+...--
T Consensus 275 y~Dlql~L~~~k~~--~~~vlfVi~-PVNgkWydytGl~~e~r~~~~~KIk~~l~s----~Gf~~i~D~s~~~y------ 341 (407)
T 3bma_A 275 YNDLQLVLTQFSKS--KVNPIFIIP-PVNKKWMDYAGLREDMYQQTVQKIRYQLES----QGFTNIADFSKDGG------ 341 (407)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEC-CCCHHHHHHTTCCHHHHHHHHHHHHHHHHT----TTCCCEEECTTCTT------
T ss_pred HHHHHHHHHHHHHc--CCceEEEEe-CCchHHHHhcCCCHHHHHHHHHHHHHHHHH----CCCcceeeccccCC------
Confidence 56789999999999 998888755 5554 11 11235688888889999998 898 9999864321
Q ss_pred ccCCCCCCCCCCHHHHHHHhhhhh
Q psy1995 186 SQGDFYDYLHLTESGYRKVFTPVY 209 (211)
Q Consensus 186 ~~~~~~Dg~Hpn~~G~~~~a~~l~ 209 (211)
.+.++.|-+||.-.|=-.+-+.|.
T Consensus 342 epYfm~DtiHlGw~GWv~~Dk~I~ 365 (407)
T 3bma_A 342 EPFFMKDTIHLGWLGWLAFDKAVD 365 (407)
T ss_dssp STTCBSSSSCBCTTHHHHHHHHHH
T ss_pred CCceeeecccCchhHHHHHHHHHH
Confidence 456779999999999887777664
No 30
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157}
Probab=95.05 E-value=0.11 Score=41.72 Aligned_cols=126 Identities=7% Similarity=-0.010 Sum_probs=78.0
Q ss_pred HHHHHHhhcCCC---CCCCCcEEEEEeccCCCCC-CHHHHHHHHHHHHHHHHhhCC----------CCeEEEEeccCCCC
Q psy1995 75 EHCLWRVQDGIL---DSIKPKVIVILVGTNNTED-SAENIADGILELIRLVQTKQP----------QADVVVLELLPRGK 140 (211)
Q Consensus 75 ~~~~~~~~~~~~---~~~~pd~Vvi~~G~ND~~~-~~~~~~~~~~~~i~~i~~~~p----------~~~ii~~~~~p~~~ 140 (211)
..++.++.. .+ +.....-|+..-|-.|... ..+.+.+.+..||+..|+.+. +.++|+..+
T Consensus 165 n~MI~p~k~-Al~~~~g~~IkGVLWyQGESN~~~~~~~~Y~~~f~~LI~~wR~d~~~~~~q~~~~~~lPFi~gqL----- 238 (337)
T 3pt5_A 165 QDLVSRTRA-ALVKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDT----- 238 (337)
T ss_dssp HHHHHHHHH-HHHTCTTCEEEEEEEECCTGGGGSTTGGGHHHHHHHHHHHHHHHHGGGGGGCC---CCCEEEECC-----
T ss_pred HHHHHHHHH-HHhhcCCCceEEEEEecCCccccCcCHHHHHHHHHHHHHHHHHHHcccccccccCCCCCEEEEEC-----
Confidence 445566542 11 1245678899999999873 356799999999999998664 677776655
Q ss_pred ccchhhHH-HHHHHHHHHHHhCCCCCCCCeEEEeCCccccc---------cC-------C---CCccCCC--CCCCCCCH
Q psy1995 141 LINKLWTK-NLATNQILADKLSPAPLGPKVHLIQHNKDEII---------SK-------D---EISQGDF--YDYLHLTE 198 (211)
Q Consensus 141 ~~~~~~~~-~~~~n~~l~~~~~~~~~~~~v~~iD~~~~~~~---------~~-------~---~~~~~~~--~Dg~Hpn~ 198 (211)
.....+. -.++-...-..+.+. ..++.|+.+...... ++ | .....++ .|++|++.
T Consensus 239 -~~f~~~~~~~~y~~~~g~~~~~~--~~~~~~~~~n~~~~~~p~~~p~~~~~~~~~~~~~a~~vss~~~t~~~d~~HF~a 315 (337)
T 3pt5_A 239 -TWYWKENFPHAYEAIYGNYQNNI--LANIIFVDFQQQGARGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSS 315 (337)
T ss_dssp -CHHHHHHCHHHHHHHTGGGTSCS--STTEEEECCSCTTCCCSBSSGGGSCCBGGGTBCCGGGCCTTTCSCSCGGGSBCH
T ss_pred -chhhhccCccchhhhcccccccc--cccceeeehhHHHHhCcccCCCcCcccccccccceEEEcCCCCccCCCCcccCh
Confidence 2222222 344555566666320 267888877654321 00 0 1122343 78999999
Q ss_pred HHHH-HHhhhhh
Q psy1995 199 SGYR-KVFTPVY 209 (211)
Q Consensus 199 ~G~~-~~a~~l~ 209 (211)
.+++ +++.+++
T Consensus 316 ~a~R~~~g~Rya 327 (337)
T 3pt5_A 316 AARRGIISDRFV 327 (337)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 9999 7666554
No 31
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=94.11 E-value=0.021 Score=47.24 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSA 107 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~ 107 (211)
.+.+|.++|+|++......-.+.-.-.+ ..+.-.+.+ .-..+++..- ..+...+||+|++.+..-+.. .++
T Consensus 21 ~~~riavlg~~T~~~l~~~l~~~~~~~g~~~~~~~~~y~-~~~~~ll~~~--s~l~~~~pd~v~~~~~~~~~~~~~~~~~ 97 (387)
T 3nvb_A 21 PKLKVALLGDTATQLLATAIKGEGILRNYNIELWEAEYN-QVERQIMDPT--SDYYQFEPDYTIIFHSTHKLLEKHSLVN 97 (387)
T ss_dssp CEEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEECCTT-CHHHHHHCTT--SHHHHHCCSEEEEECCHHHHHHHHHTSC
T ss_pred ceEEEEEeccchHHHHHHHHHHHHHHCCCcceEEEcCcc-hHHHHHhCCc--chhhhcCCCEEEEEecHHHhcccccCCh
Confidence 4469999999999875332111101111 122222222 2222332211 122257999999987665442 112
Q ss_pred HH----HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCcc---------chhhHHHHHHHHHHHHHhCCCCCCCCeEEEeC
Q psy1995 108 EN----IADGILELIRLVQTKQPQADVVVLELLPRGKLI---------NKLWTKNLATNQILADKLSPAPLGPKVHLIQH 174 (211)
Q Consensus 108 ~~----~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~---------~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~ 174 (211)
++ +.+.+..+.+.++++ .+++||+.+.++....+ ......+.++|..+.+.+.+ ++++.++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~N~~l~~~~~~---~~~~~~~D~ 173 (387)
T 3nvb_A 98 SDLQNKLADDRLDFVRLLCEQ-GIGRVIYYNYPEIEDTIWGSYATKVQSSFTYQLTKLNYELMNISQA---YPNFFICNL 173 (387)
T ss_dssp HHHHTTHHHHHHHHHHHHHHH-CCSEEEEECCCCCCCCSSGGGGGGCTTSHHHHHHHHHHHHHHHHHH---CTTEEEECH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCceEEEeCCCCCCccccccchhcccccHHHHHHHHHHHHHHHHhh---CCCEEEeeH
Confidence 22 334556666777776 47888887754332211 11234689999999999987 689999999
Q ss_pred Cccc
Q psy1995 175 NKDE 178 (211)
Q Consensus 175 ~~~~ 178 (211)
....
T Consensus 174 ~~~~ 177 (387)
T 3nvb_A 174 AGIS 177 (387)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 32
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=90.92 E-value=0.95 Score=31.03 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=49.5
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCCcc-eEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEPLH-CLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~-~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
....+|+++.|+-... ..+...+.... ..... .-.+....+..+. ..+||+||+.+...+..
T Consensus 18 ~~m~~iLivdd~~~~~----~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~------- 80 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLR----DAMCQLLTLQPDVESVL-QAKNGQEAIQLLE-----KESVDIAILDVEMPVKT------- 80 (150)
T ss_dssp --CEEEEEECSCHHHH----HHHHHHHHTSTTEEEEE-EESSHHHHHHHHT-----TSCCSEEEECSSCSSSC-------
T ss_pred CCccEEEEEcCCHHHH----HHHHHHHHhCCCcEEEE-EECCHHHHHHHhh-----ccCCCEEEEeCCCCCCc-------
Confidence 4557899999986543 12333332111 11111 1123344455443 35799999976555432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++.+|.++|++++...
T Consensus 81 --g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 81 --GLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp --HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred --HHHHHHHHHHhCCCCeEEEEeCCC
Confidence 245788888888999999998643
No 33
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=89.97 E-value=2.5 Score=28.92 Aligned_cols=81 Identities=9% Similarity=0.057 Sum_probs=49.7
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
+..+|+++.|+-...- .+...+. ++.+.. -.+....+..+. ...||+||+.+...+..
T Consensus 6 ~~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~----~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~------- 65 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILN----SLKRLIKRLGCNIIT----FTSPLDALEALK-----GTSVQLVISDMRMPEMG------- 65 (154)
T ss_dssp SCCEEEEECSCHHHHH----HHHHHHHTTTCEEEE----ESCHHHHHHHHT-----TSCCSEEEEESSCSSSC-------
T ss_pred CCCeEEEEcCCHHHHH----HHHHHHHHcCCeEEE----eCCHHHHHHHHh-----cCCCCEEEEecCCCCCC-------
Confidence 4678999999865431 2223322 333331 122344455443 34699999987665532
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++.+|.++|++++..
T Consensus 66 --g~~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 66 --GEVFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp --HHHHHHHHHHHCTTSEEEEEECG
T ss_pred --HHHHHHHHHHhCCCCcEEEEecC
Confidence 23577888888899999999864
No 34
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=89.81 E-value=0.66 Score=31.92 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=49.8
Q ss_pred hcCCCcEEEEccchhcccCcchhHHhhcCC---cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHH
Q psy1995 32 KESEPELVFIGDSLISFLTQTQIWHNLFEP---LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAE 108 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~~~~~~~~~~---~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 108 (211)
.....+|+++.|+-.... .+...+.. ..++.... +....+..+. ..+||+||+.+...+..
T Consensus 12 ~~~~~~iLivdd~~~~~~----~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~-----~~~~dlii~d~~l~~~~---- 75 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFRE----GVVRALSLSGSVNVVGEAD---DGAAALELIK-----AHLPDVALLDYRMPGMD---- 75 (152)
T ss_dssp --CCEEEEEECSSHHHHH----HHHHHHHHHSSEEEEEEES---SHHHHHHHHH-----HHCCSEEEEETTCSSSC----
T ss_pred CCceEEEEEEcCCHHHHH----HHHHHHhhCCCeEEEEEeC---CHHHHHHHHH-----hcCCCEEEEeCCCCCCC----
Confidence 456789999999865431 12222221 12222222 2334444443 24689999987655532
Q ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 109 NIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 76 -----g~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 76 -----GAQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp -----HHHHHHHHHHTTCSCEEEEEESC
T ss_pred -----HHHHHHHHHhcCCCCeEEEEEcc
Confidence 24578888888899999999864
No 35
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=88.89 E-value=3.1 Score=28.38 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=50.6
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
....+|+++.|+-... ..+...+.. +.+.. -.+....+..+. ..+||+||+.+...+..
T Consensus 12 ~~~~~ILivdd~~~~~----~~l~~~L~~~g~~v~~----~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~------ 72 (153)
T 3hv2_A 12 TRRPEILLVDSQEVIL----QRLQQLLSPLPYTLHF----ARDATQALQLLA-----SREVDLVISAAHLPQMD------ 72 (153)
T ss_dssp CSCCEEEEECSCHHHH----HHHHHHHTTSSCEEEE----ESSHHHHHHHHH-----HSCCSEEEEESCCSSSC------
T ss_pred cCCceEEEECCCHHHH----HHHHHHhcccCcEEEE----ECCHHHHHHHHH-----cCCCCEEEEeCCCCcCc------
Confidence 3457899999986543 223344432 22221 123344445443 24799999987655432
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++.+|.++||+++..
T Consensus 73 ---g~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 73 ---GPTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp ---HHHHHHHHHHHCTTSEEEEECCC
T ss_pred ---HHHHHHHHHhHCCCCeEEEEECC
Confidence 24577788888899999998864
No 36
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=88.84 E-value=2.1 Score=28.75 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=48.5
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-... ..+...+. ++.+.. -.+....+..+. ..+||+||+.+ ..+.
T Consensus 3 ~~~~iLivdd~~~~~----~~l~~~L~~~g~~v~~----~~~~~~a~~~l~-----~~~~dlvi~d~-~~~~-------- 60 (142)
T 2qxy_A 3 LTPTVMVVDESRITF----LAVKNALEKDGFNVIW----AKNEQEAFTFLR-----REKIDLVFVDV-FEGE-------- 60 (142)
T ss_dssp CCCEEEEECSCHHHH----HHHHHHHGGGTCEEEE----ESSHHHHHHHHT-----TSCCSEEEEEC-TTTH--------
T ss_pred CCCeEEEEeCCHHHH----HHHHHHHHhCCCEEEE----ECCHHHHHHHHh-----ccCCCEEEEeC-CCCC--------
Confidence 356899999886543 12233332 233331 123344555443 35799999987 5431
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.-.++++.+++.+|..+|++++..
T Consensus 61 -~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 61 -ESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp -HHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -cHHHHHHHHHHHCCCCCEEEEECC
Confidence 124578888888899999999864
No 37
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=88.18 E-value=2.9 Score=28.04 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-... ..+...+. ++.+.. ..+....+..+.. ....||+||+.+...+..
T Consensus 3 ~~~ilivdd~~~~~----~~l~~~l~~~g~~v~~----~~~~~~a~~~~~~---~~~~~dlvi~d~~l~~~~-------- 63 (143)
T 3jte_A 3 LAKILVIDDESTIL----QNIKFLLEIDGNEVLT----ASSSTEGLRIFTE---NCNSIDVVITDMKMPKLS-------- 63 (143)
T ss_dssp CCEEEEECSCHHHH----HHHHHHHHHTTCEEEE----ESSHHHHHHHHHH---TTTTCCEEEEESCCSSSC--------
T ss_pred CCEEEEEcCCHHHH----HHHHHHHHhCCceEEE----eCCHHHHHHHHHh---CCCCCCEEEEeCCCCCCc--------
Confidence 46799999875432 11222222 223321 1233444444431 136899999987655532
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 113 GILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|.++|++++...
T Consensus 64 -g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 64 -GMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp -HHHHHHHHHHHCTTCEEEEEECTT
T ss_pred -HHHHHHHHHHhCCCCeEEEEECCC
Confidence 245778888888999999998643
No 38
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=87.98 E-value=1.8 Score=29.17 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCCcce---EEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEPLHC---LAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~---~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
.+..+|+++.|+-... ..+...+..... +....+ ....+..+.........||+||+.+...+..
T Consensus 7 ~~~~~iLivdd~~~~~----~~l~~~l~~~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~----- 74 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVN----FLNTTIIRMTHRVEEIQSVTS---GNAAINKLNELYAAGRWPSIICIDINMPGIN----- 74 (146)
T ss_dssp CCEEEEEEECSCHHHH----HHHHHHHHTTCCEEEEEEESS---HHHHHHHHHHHHTSSCCCSEEEEESSCSSSC-----
T ss_pred CccceEEEEeCCHHHH----HHHHHHHHhcCCCeeeeecCC---HHHHHHHHHHhhccCCCCCEEEEcCCCCCCC-----
Confidence 3456899999986532 122333322221 222222 3333333332111246899999987666543
Q ss_pred HHHHHHHHHHHHHh----hCCCCeEEEEecc
Q psy1995 110 IADGILELIRLVQT----KQPQADVVVLELL 136 (211)
Q Consensus 110 ~~~~~~~~i~~i~~----~~p~~~ii~~~~~ 136 (211)
-.++++.+++ ..+..+|++++..
T Consensus 75 ----g~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 75 ----GWELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp ----HHHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred ----HHHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 2457778887 6789999998763
No 39
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=87.91 E-value=2.8 Score=28.26 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=47.4
Q ss_pred CcEEEEccchhcccCcchhHHhhcC----CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE----PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~----~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
.+|+++.|+-... ..+...+. ++.+..... +....+..+. ..+||+|++.+..-+..
T Consensus 3 ~~ILivdd~~~~~----~~l~~~L~~~~~~~~~~~~~~---~~~~al~~~~-----~~~~dlvllD~~lp~~~------- 63 (141)
T 3cu5_A 3 LRILIVDDEKLTR----DGLIANINWKALSFDQIDQAD---DGINAIQIAL-----KHPPNVLLTDVRMPRMD------- 63 (141)
T ss_dssp CEEEEECSCHHHH----HHHHHHCCGGGSCCSEEEEES---SHHHHHHHHT-----TSCCSEEEEESCCSSSC-------
T ss_pred ceEEEEeCCHHHH----HHHHHHHHHccCCcEEeeecc---cHHHHHHHHh-----cCCCCEEEEeCCCCCCC-------
Confidence 4689999886533 12233332 233332222 2233444332 35799999987655432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|..+|++++...
T Consensus 64 --g~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 64 --GIELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECCST
T ss_pred --HHHHHHHHHhhCCCCcEEEEeCCC
Confidence 135677788888999999998754
No 40
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=87.10 E-value=3.6 Score=28.01 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=48.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCC-cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEP-LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~-~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
+..+|+++.|.-... ..+...+.. ..+...+. ..+....+..+. ...||+||+.+...+..
T Consensus 4 ~~~~ILivdd~~~~~----~~l~~~L~~~~~~~v~~~-~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~-------- 65 (153)
T 3cz5_A 4 STARIMLVDDHPIVR----EGYRRLIERRPGYAVVAE-AADAGEAYRLYR-----ETTPDIVVMDLTLPGPG-------- 65 (153)
T ss_dssp CCEEEEEECSCHHHH----HHHHHHHTTSTTEEEEEE-ESSHHHHHHHHH-----TTCCSEEEECSCCSSSC--------
T ss_pred cccEEEEECCcHHHH----HHHHHHHhhCCCcEEEEE-eCCHHHHHHHHh-----cCCCCEEEEecCCCCCC--------
Confidence 346799999886533 223344432 22222111 122344444443 34699999976544422
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++.+|..+|++++..
T Consensus 66 -g~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 66 -GIEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp -HHHHHHHHHHHCTTCCEEEEESC
T ss_pred -HHHHHHHHHHhCCCCeEEEEECC
Confidence 24578888888899999998864
No 41
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=86.88 E-value=1.4 Score=29.51 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=47.4
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCC--CCCCHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN--TEDSAEN 109 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND--~~~~~~~ 109 (211)
...+|+++.|+-... ..+...+.. +.+... .+..+-+. .+...+||+||+.+...+ ..
T Consensus 5 ~~~~ilivdd~~~~~----~~l~~~L~~~g~~v~~~-------~~~~~a~~--~l~~~~~dlvi~D~~l~~~~~~----- 66 (136)
T 3kto_A 5 HHPIIYLVDHQKDAR----AALSKLLSPLDVTIQCF-------ASAESFMR--QQISDDAIGMIIEAHLEDKKDS----- 66 (136)
T ss_dssp --CEEEEECSCHHHH----HHHHHHHTTSSSEEEEE-------SSHHHHTT--SCCCTTEEEEEEETTGGGBTTH-----
T ss_pred CCCeEEEEcCCHHHH----HHHHHHHHHCCcEEEEe-------CCHHHHHH--HHhccCCCEEEEeCcCCCCCcc-----
Confidence 356899999986543 223334432 333211 12222222 233567999999765544 21
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 67 ----g~~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 67 ----GIELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp ----HHHHHHHHHHTTCCCCEEEEESS
T ss_pred ----HHHHHHHHHhCCCCCCEEEEEcC
Confidence 24578888888899999999864
No 42
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=86.81 E-value=1.7 Score=29.78 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
.+.+|+++.|+-...- .+...+ .++.+... .+....+..+ ....||+||+.+...+..
T Consensus 2 ~~~~ILivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~a~~~l-----~~~~~dliild~~l~~~~------- 61 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRK----AMQQTLELAGFTVSSF----ASATEALAGL-----SADFAGIVISDIRMPGMD------- 61 (155)
T ss_dssp --CEEEEECSCHHHHH----HHHHHHHHTTCEEEEE----SCHHHHHHTC-----CTTCCSEEEEESCCSSSC-------
T ss_pred CCCEEEEEeCCHHHHH----HHHHHHHHcCcEEEEE----CCHHHHHHHH-----HhCCCCEEEEeCCCCCCC-------
Confidence 3568999998865431 122222 23333211 1223333322 246799999987655432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|.++|++++..
T Consensus 62 --g~~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 62 --GLALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp --HHHHHHHHHHHCTTSCEEEEECG
T ss_pred --HHHHHHHHHhhCCCCCEEEEECC
Confidence 23567788888899999999863
No 43
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=86.69 E-value=3.7 Score=27.29 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=47.4
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC-----CCCCCH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN-----NTEDSA 107 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N-----D~~~~~ 107 (211)
..+|+++.|.-... ..+...+. ++.+.. -.+....+..+.. .+||+||+.+... +..
T Consensus 3 ~~~ilivdd~~~~~----~~l~~~L~~~g~~v~~----~~~~~~a~~~l~~-----~~~dlvi~d~~~~~~~~~~~~--- 66 (140)
T 2qr3_A 3 LGTIIIVDDNKGVL----TAVQLLLKNHFSKVIT----LSSPVSLSTVLRE-----ENPEVVLLDMNFTSGINNGNE--- 66 (140)
T ss_dssp CCEEEEECSCHHHH----HHHHHHHTTTSSEEEE----ECCHHHHHHHHHH-----SCEEEEEEETTTTC-----CC---
T ss_pred CceEEEEeCCHHHH----HHHHHHHHhCCcEEEE----eCCHHHHHHHHHc-----CCCCEEEEeCCcCCCCCCCcc---
Confidence 46799999886533 12333333 233321 1223445554442 4689999987654 321
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++.+|..+|++++..
T Consensus 67 ------g~~~~~~l~~~~~~~~ii~ls~~ 89 (140)
T 2qr3_A 67 ------GLFWLHEIKRQYRDLPVVLFTAY 89 (140)
T ss_dssp ------HHHHHHHHHHHCTTCCEEEEEEG
T ss_pred ------HHHHHHHHHhhCcCCCEEEEECC
Confidence 23567788888899999999864
No 44
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=86.66 E-value=2.3 Score=28.37 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=48.2
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
....+|+++.|.-.... .+...+. +..+... .+....+..+. ..+||+||+.+...|..
T Consensus 5 ~~~~~ilivdd~~~~~~----~l~~~L~~~~~~v~~~----~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~------ 65 (137)
T 3hdg_A 5 EVALKILIVEDDTDARE----WLSTIISNHFPEVWSA----GDGEEGERLFG-----LHAPDVIITDIRMPKLG------ 65 (137)
T ss_dssp --CCCEEEECSCHHHHH----HHHHHHHTTCSCEEEE----SSHHHHHHHHH-----HHCCSEEEECSSCSSSC------
T ss_pred ccccEEEEEeCCHHHHH----HHHHHHHhcCcEEEEE----CCHHHHHHHHh-----ccCCCEEEEeCCCCCCC------
Confidence 34678999999865431 1222222 1222211 12344444443 24689999977655532
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 66 ---g~~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 66 ---GLEMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp ---HHHHHHHHHHTTCCCEEEECCCC
T ss_pred ---HHHHHHHHHhcCCCCcEEEEecC
Confidence 24578888888899999998764
No 45
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=86.56 E-value=2.5 Score=27.88 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .+...+. ++.+.. ..+....+..+. ..+||+||+.+...+..
T Consensus 6 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~----~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~------- 65 (130)
T 3eod_A 6 VGKQILIVEDEQVFRS----LLDSWFSSLGATTVL----AADGVDALELLG-----GFTPDLMICDIAMPRMN------- 65 (130)
T ss_dssp TTCEEEEECSCHHHHH----HHHHHHHHTTCEEEE----ESCHHHHHHHHT-----TCCCSEEEECCC------------
T ss_pred CCCeEEEEeCCHHHHH----HHHHHHHhCCceEEE----eCCHHHHHHHHh-----cCCCCEEEEecCCCCCC-------
Confidence 4568999999865431 1222222 233332 123344555443 45799999966443321
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 66 --g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 66 --GLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp --CHHHHHHHHHTTCCCCEEEEECC
T ss_pred --HHHHHHHHHhcCCCCCEEEEEcC
Confidence 14577888888899999999864
No 46
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=86.24 E-value=2.1 Score=28.98 Aligned_cols=82 Identities=7% Similarity=0.075 Sum_probs=48.6
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
....+|+++.|+-.... .+...+. ++.+.. . .+....+..+.. ..||+||+.+...+..
T Consensus 6 ~~~~~iLivd~~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~a~~~l~~-----~~~dlii~d~~l~~~~------ 66 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALA----ASISALSQEGFDIIQ-C---GNAIEAVPVAVK-----THPHLIITEANMPKIS------ 66 (147)
T ss_dssp --CEEEEEECTTGGGGH----HHHHHHHHHTEEEEE-E---SSHHHHHHHHHH-----HCCSEEEEESCCSSSC------
T ss_pred CCCceEEEEeCCHHHHH----HHHHHHHHcCCeEEE-e---CCHHHHHHHHHc-----CCCCEEEEcCCCCCCC------
Confidence 45678999999865432 1222222 233331 1 233444444432 3689999987665532
Q ss_pred HHHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
-.++++.+++ ..+.++||+++..
T Consensus 67 ---g~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 67 ---GMDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp ---HHHHHHHHHTSTTTTTSCEEEEESS
T ss_pred ---HHHHHHHHHcCcccCCCCEEEEeCC
Confidence 2457888887 6789999999864
No 47
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=84.81 E-value=6.3 Score=25.76 Aligned_cols=83 Identities=10% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCC-CCCCHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN-TEDSAENI 110 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND-~~~~~~~~ 110 (211)
...+|+++.|.-.... .+...+ .++.+.. -.+....+..+.. ..+||+||+.+...+ ..
T Consensus 4 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~----~~~~~~a~~~l~~----~~~~dlvi~d~~l~~~~~------ 65 (132)
T 2rdm_A 4 EAVTILLADDEAILLL----DFESTLTDAGFLVTA----VSSGAKAIEMLKS----GAAIDGVVTDIRFCQPPD------ 65 (132)
T ss_dssp SSCEEEEECSSHHHHH----HHHHHHHHTTCEEEE----ESSHHHHHHHHHT----TCCCCEEEEESCCSSSSC------
T ss_pred CCceEEEEcCcHHHHH----HHHHHHHHcCCEEEE----ECCHHHHHHHHHc----CCCCCEEEEeeeCCCCCC------
Confidence 3568999998865331 122222 2333332 1233445555542 137999999876554 32
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|..+|++++...
T Consensus 66 ---g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 66 ---GWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp ---HHHHHHHHHHHCTTCCEEEEESSC
T ss_pred ---HHHHHHHHHhcCCCCCEEEEeCCc
Confidence 135788888888899999998644
No 48
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=84.31 E-value=3.5 Score=28.38 Aligned_cols=84 Identities=8% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .+...+. ++.+..... +....+..+.. ...+||+||+.+...+..
T Consensus 35 ~~~~Ilivdd~~~~~~----~l~~~L~~~g~~v~~~~~---~~~~al~~l~~---~~~~~dliilD~~l~~~~------- 97 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVK----QLTQIFTSEGFNIIDTAA---DGEEAVIKYKN---HYPNIDIVTLXITMPKMD------- 97 (157)
T ss_dssp EECEEEEECSCHHHHH----HHHHHHHHTTCEEEEEES---SHHHHHHHHHH---HGGGCCEEEECSSCSSSC-------
T ss_pred CceEEEEEeCCHHHHH----HHHHHHHhCCCeEEEEEC---CHHHHHHHHHh---cCCCCCEEEEeccCCCcc-------
Confidence 3468999999865431 1222222 333432222 23344444432 012689999977655532
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|.++||+++..
T Consensus 98 --g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 98 --GITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp --HHHHHHHHHHHCTTCCEEEEESC
T ss_pred --HHHHHHHHHhhCCCCcEEEEecc
Confidence 24578888888899999999863
No 49
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=84.19 E-value=1.9 Score=29.08 Aligned_cols=82 Identities=20% Similarity=0.371 Sum_probs=46.3
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--Ccce-EEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHC-LAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~-~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
...+|+++.|+-.... .+...+. +..+ +... .+....+..+. ..+||+||+.+...+..
T Consensus 4 ~~~~ILivdd~~~~~~----~l~~~L~~~~~~~~v~~~---~~~~~a~~~l~-----~~~~dlii~D~~l~~~~------ 65 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIA----LIRRVLDRKDIHCQLEFV---DNGAKALYQVQ-----QAKYDLIILDIGLPIAN------ 65 (144)
T ss_dssp -CEEEEEECCCHHHHH----HHHHHHHHTTCCEEEEEE---SSHHHHHHHHT-----TCCCSEEEECTTCGGGC------
T ss_pred CCCEEEEEeCCHHHHH----HHHHHHHhcCCCeeEEEE---CCHHHHHHHhh-----cCCCCEEEEeCCCCCCC------
Confidence 3568999998765431 1222222 2221 1111 22344444443 35799999965444321
Q ss_pred HHHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
-.++++.+++ ..|.++||+++..
T Consensus 66 ---g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 66 ---GFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp ---HHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred ---HHHHHHHHHhcccccCCCEEEEeCC
Confidence 2457888888 6789999999863
No 50
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=84.11 E-value=2.7 Score=28.69 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=47.5
Q ss_pred CCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCC----CCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGI----LDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~----~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
+.+|+++.|.-.........+.+......+.. ..+ ....+..+.... ....+||+||+.+...+..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~-~~~---~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~------ 73 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIA-FTD---GTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMT------ 73 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEE-ESS---HHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSB------
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEE-eCC---HHHHHHHHhccccccccccCCCCEEEEeCCCCCCc------
Confidence 46899999986533111111112111112222 222 334444443111 1246899999976555432
Q ss_pred HHHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
-.++++.+++ ..|.++|++++..
T Consensus 74 ---g~~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 74 ---GIDILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp ---HHHHHHHHHHSTTTTTSCEEEEESC
T ss_pred ---HHHHHHHHHhcccccCCCEEEEecC
Confidence 2457778887 6789999999864
No 51
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=83.49 E-value=7.7 Score=25.74 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=49.7
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
....+|+++.|+-.... .+...+. ++.+.. -.+....+..+. ...||+||+.+...+..
T Consensus 5 ~~~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~----~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~------ 65 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRI----AVKTILSDAGFHIIS----ADSGGQCIDLLK-----KGFSGVVLLDIMMPGMD------ 65 (142)
T ss_dssp -CCCEEEEECSCHHHHH----HHHHHHHHTTCEEEE----ESSHHHHHHHHH-----TCCCEEEEEESCCSSSC------
T ss_pred CCCCeEEEEcCCHHHHH----HHHHHHHHCCeEEEE----eCCHHHHHHHHH-----hcCCCEEEEeCCCCCCC------
Confidence 45678999999865431 1222222 233321 123344555544 34689999987655432
Q ss_pred HHHHHHHHHHHHh--hCCCCeEEEEeccC
Q psy1995 111 ADGILELIRLVQT--KQPQADVVVLELLP 137 (211)
Q Consensus 111 ~~~~~~~i~~i~~--~~p~~~ii~~~~~p 137 (211)
-.++++.+++ ..|.++|++++...
T Consensus 66 ---g~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 66 ---GWDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp ---HHHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred ---HHHHHHHHHhhcccCCCCEEEEECCC
Confidence 2357788887 67899999998754
No 52
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=83.23 E-value=4.9 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=28.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 91 PKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 91 pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
||+||+.+...+.. -.++++.+++..|..+|++++..
T Consensus 47 ~dlvi~D~~l~~~~---------g~~~~~~l~~~~~~~~ii~~s~~ 83 (135)
T 3eqz_A 47 QDIIILDLMMPDMD---------GIEVIRHLAEHKSPASLILISGY 83 (135)
T ss_dssp TEEEEEECCTTTTH---------HHHHHHHHHHTTCCCEEEEEESS
T ss_pred CCEEEEeCCCCCCC---------HHHHHHHHHhCCCCCCEEEEEec
Confidence 99999987655431 24578888888899999998863
No 53
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=82.84 E-value=7 Score=25.39 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-.... .....+. ++.+... .+....+..+. ..+||+||+.+...+..
T Consensus 3 ~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~a~~~l~-----~~~~dlii~D~~l~~~~-------- 61 (127)
T 3i42_A 3 LQQALIVEDYQAAAE----TFKELLEMLGFQADYV----MSGTDALHAMS-----TRGYDAVFIDLNLPDTS-------- 61 (127)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHTTEEEEEE----SSHHHHHHHHH-----HSCCSEEEEESBCSSSB--------
T ss_pred cceEEEEcCCHHHHH----HHHHHHHHcCCCEEEE----CCHHHHHHHHH-----hcCCCEEEEeCCCCCCC--------
Confidence 457999998865331 1222222 2222221 23344555544 24699999987655532
Q ss_pred HHHHHHHHHHhh--CCCCeEEEEeccCCC
Q psy1995 113 GILELIRLVQTK--QPQADVVVLELLPRG 139 (211)
Q Consensus 113 ~~~~~i~~i~~~--~p~~~ii~~~~~p~~ 139 (211)
-.++++.+++. .|..+|++++.....
T Consensus 62 -g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 62 -GLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp -HHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred -HHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 24578888887 789999999875433
No 54
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=82.69 E-value=5.8 Score=26.21 Aligned_cols=82 Identities=11% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .+...+. ++.+... .+....+..+.. ...||+||+.+...+..
T Consensus 6 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~a~~~~~~----~~~~dlvi~D~~l~~~~------- 66 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNRE----ALILYLKSRGIDAVGA----DGAEEARLYLHY----QKRIGLMITDLRMQPES------- 66 (136)
T ss_dssp -CCEEEEECSCHHHHH----HHHHHHHHTTCCEEEE----SSHHHHHHHHHH----CTTEEEEEECSCCSSSC-------
T ss_pred CCCeEEEECCCHHHHH----HHHHHHHHcCceEEEe----CCHHHHHHHHHh----CCCCcEEEEeccCCCCC-------
Confidence 4678999999865431 1222221 3344321 223344444432 23489999976555432
Q ss_pred HHHHHHHHHHHhh-CCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTK-QPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~-~p~~~ii~~~~~ 136 (211)
-.++++.+++. .|..+|++++..
T Consensus 67 --g~~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 67 --GLDLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp --HHHHHHHHHTSTTTTCEEEEEESS
T ss_pred --HHHHHHHHHhcCCCCCCEEEEeCC
Confidence 24577888887 689999998864
No 55
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=82.65 E-value=7.8 Score=25.17 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=46.8
Q ss_pred CCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-...- .....+ .++.+... .+....+..+. ..+||+|++.+...+..
T Consensus 3 ~~~ilivdd~~~~~~----~l~~~l~~~~~~v~~~----~~~~~~~~~~~-----~~~~dlvi~D~~l~~~~-------- 61 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRK----SLAFMLTMNGFAVKMH----QSAEAFLAFAP-----DVRNGVLVTDLRMPDMS-------- 61 (126)
T ss_dssp CCEEEEEESSHHHHH----HHHHHHHHTTCEEEEE----SCHHHHHHHGG-----GCCSEEEEEECCSTTSC--------
T ss_pred CCEEEEEcCCHHHHH----HHHHHHHhCCcEEEEe----CCHHHHHHHHh-----cCCCCEEEEECCCCCCC--------
Confidence 467999999865431 122222 12333211 22344444443 35789999977655432
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 62 -g~~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 62 -GVELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp -HHHHHHHHHHTTCCCCEEEEECT
T ss_pred -HHHHHHHHHhcCCCCCEEEEECC
Confidence 13467778887889999998864
No 56
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=82.53 E-value=6.8 Score=25.97 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=47.7
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
....+|+++.|+-.........+... .++.++.... +....+..+. ..+||+||+.+...+..
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~-~~~~~v~~~~---~~~~a~~~l~-----~~~~dlii~d~~l~~~~-------- 68 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENL-FPYAKIKIAY---NPFDAGDLLH-----TVKPDVVMLDLMMVGMD-------- 68 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHH-CTTCEEEEEC---SHHHHHHHHH-----HTCCSEEEEETTCTTSC--------
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhc-cCccEEEEEC---CHHHHHHHHH-----hcCCCEEEEecccCCCc--------
Confidence 35678999999865432111111111 2334222222 2344444443 24689999987655432
Q ss_pred HHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 113 GILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
-.++++.+++ ..|.++|++++..
T Consensus 69 -g~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 69 -GFSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp -HHHHHHHHHTSTTTTTSEEEEEESS
T ss_pred -HHHHHHHHHhCccccCCcEEEEeCC
Confidence 2457888887 6789999998864
No 57
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=81.95 E-value=4.6 Score=26.62 Aligned_cols=85 Identities=9% Similarity=0.198 Sum_probs=46.7
Q ss_pred CCcEEEEccchhcccCcchhHHhhcCC--c--ceEEeccCCchhHHHHHHhhcCC--CCCCCCcEEEEEeccCCCCCCHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFEP--L--HCLAFGIGGDKVEHCLWRVQDGI--LDSIKPKVIVILVGTNNTEDSAE 108 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~~--~--~~~n~g~~G~~~~~~~~~~~~~~--~~~~~pd~Vvi~~G~ND~~~~~~ 108 (211)
+.+|+++.|+-... ..+...+.. . .+.. . .+....+..+.... -....||+|++.+...+..
T Consensus 2 ~~~ilivdd~~~~~----~~l~~~L~~~~~~~~v~~-~---~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~---- 69 (140)
T 1k68_A 2 HKKIFLVEDNKADI----RLIQEALANSTVPHEVVT-V---RDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKD---- 69 (140)
T ss_dssp CCEEEEECCCHHHH----HHHHHHHHTCSSCCEEEE-E---CSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC----
T ss_pred CCeEEEEeCCHHHH----HHHHHHHHhcCCCceEEE-E---CCHHHHHHHHHcccccccCCCCcEEEEecCCCccc----
Confidence 46789999886543 122333322 2 1221 1 22344444443200 0026799999976655432
Q ss_pred HHHHHHHHHHHHHHhhC--CCCeEEEEecc
Q psy1995 109 NIADGILELIRLVQTKQ--PQADVVVLELL 136 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~--p~~~ii~~~~~ 136 (211)
-.++++.+++.. +.++|++++..
T Consensus 70 -----g~~~~~~l~~~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 70 -----GREVLAEIKSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp -----HHHHHHHHHHSTTGGGSCEEEEESC
T ss_pred -----HHHHHHHHHcCcccccccEEEEecC
Confidence 235677787765 78899998864
No 58
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=81.10 E-value=6.3 Score=26.13 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=48.1
Q ss_pred hhcCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCC-CCCcEEEEEeccCCCCCCH
Q psy1995 31 AKESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDS-IKPKVIVILVGTNNTEDSA 107 (211)
Q Consensus 31 ~~~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~-~~pd~Vvi~~G~ND~~~~~ 107 (211)
...+..+|+++.|+-.... .+...+. ++.+.. -.+....+..+. . ..||+||+.+...+..
T Consensus 11 ~~~~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~----~~~~~~al~~l~-----~~~~~dlvilD~~l~~~~--- 74 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHAT----LIQYHLNQLGAEVTV----HPSGSAFFQHRS-----QLSTCDLLIVSDQLVDLS--- 74 (138)
T ss_dssp ---CCCEEEEECSCHHHHH----HHHHHHHHTTCEEEE----ESSHHHHHHTGG-----GGGSCSEEEEETTCTTSC---
T ss_pred CCCCCCeEEEECCCHHHHH----HHHHHHHHcCCEEEE----eCCHHHHHHHHH-----hCCCCCEEEEeCCCCCCC---
Confidence 3457788999999865431 1222221 233221 112233443332 3 5799999977655432
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEe-cc
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLE-LL 136 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~-~~ 136 (211)
-.++++.+++..|.++|++++ ..
T Consensus 75 ------g~~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 75 ------IFSLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp ------HHHHHHHHTTSSSCCEEEEEESCC
T ss_pred ------HHHHHHHHHhhCCCCCEEEEECCC
Confidence 135778888888899999998 54
No 59
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=81.09 E-value=11 Score=27.11 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=49.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
.+.+|+++.|.-.... .+...+. ++.+... .+....+..+ ...+||+|++.+..-|..
T Consensus 3 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~al~~~-----~~~~~dlvl~D~~lp~~~------- 62 (208)
T 1yio_A 3 AKPTVFVVDDDMSVRE----GLRNLLRSAGFEVETF----DCASTFLEHR-----RPEQHGCLVLDMRMPGMS------- 62 (208)
T ss_dssp CCCEEEEECSCHHHHH----HHHHHHHTTTCEEEEE----SSHHHHHHHC-----CTTSCEEEEEESCCSSSC-------
T ss_pred CCCEEEEEcCCHHHHH----HHHHHHHhCCceEEEc----CCHHHHHHhh-----hccCCCEEEEeCCCCCCC-------
Confidence 3568999999865431 1222222 3333321 2233444433 246799999977655432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
-.++++.+++..|..+|++++....
T Consensus 63 --g~~~~~~l~~~~~~~~ii~ls~~~~ 87 (208)
T 1yio_A 63 --GIELQEQLTAISDGIPIVFITAHGD 87 (208)
T ss_dssp --HHHHHHHHHHTTCCCCEEEEESCTT
T ss_pred --HHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 1357888888889999999987543
No 60
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=79.03 E-value=7 Score=25.93 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=47.5
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .+...+. ++.+... .+....+..+. ..+||+||+.+..-+..
T Consensus 5 ~~~~iLivdd~~~~~~----~l~~~l~~~g~~v~~~----~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~------- 64 (140)
T 3grc_A 5 PRPRILICEDDPDIAR----LLNLMLEKGGFDSDMV----HSAAQALEQVA-----RRPYAAMTVDLNLPDQD------- 64 (140)
T ss_dssp CCSEEEEECSCHHHHH----HHHHHHHHTTCEEEEE----CSHHHHHHHHH-----HSCCSEEEECSCCSSSC-------
T ss_pred CCCCEEEEcCCHHHHH----HHHHHHHHCCCeEEEE----CCHHHHHHHHH-----hCCCCEEEEeCCCCCCC-------
Confidence 4578999999865431 1222222 2333221 23344455443 25699999966544432
Q ss_pred HHHHHHHHHHHh--hCCCCeEEEEec
Q psy1995 112 DGILELIRLVQT--KQPQADVVVLEL 135 (211)
Q Consensus 112 ~~~~~~i~~i~~--~~p~~~ii~~~~ 135 (211)
-.++++.+++ ..|.++|++++.
T Consensus 65 --g~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 65 --GVSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp --HHHHHHHHHTSGGGTTCEEEEECT
T ss_pred --HHHHHHHHHhCcccCCCCEEEEec
Confidence 2457788887 678999999886
No 61
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=78.24 E-value=5.4 Score=27.06 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=42.3
Q ss_pred CCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGI 114 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~ 114 (211)
..+|+++.|+-...-.....+.+. .+...+... .+....+..+.. ...||+||+.+...+.. -
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~-~g~~~v~~~---~~~~~a~~~l~~----~~~~dlvi~d~~l~~~~---------g 65 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGA-FSGMRVEGA---ETVSDALAFLEA----DNTVDLILLDVNLPDAE---------A 65 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHH-CTTEEEEEE---SSHHHHHHHHHT----TCCCSEEEECC---------------C
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhC-CCceEEEEe---cCHHHHHHHHhc----cCCCCEEEEeCCCCCCc---------h
Confidence 357889988865331111111111 122111111 223444444432 25799999966543321 1
Q ss_pred HHHHHHHHhhCCCCeEEEEeccC
Q psy1995 115 LELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
.++++.+++.+|.++|++++...
T Consensus 66 ~~~~~~l~~~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 66 IDGLVRLKRFDPSNAVALISGET 88 (154)
T ss_dssp HHHHHHHHHHCTTSEEEEC----
T ss_pred HHHHHHHHHhCCCCeEEEEeCCC
Confidence 35778888888999999988643
No 62
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=77.90 E-value=8.3 Score=25.64 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=45.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
...+|+++.|+-...-.....+... .++.++... .+....+..+.. ..||+||+.+..-+..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~-~~~~~v~~~---~~~~~al~~l~~-----~~~dlvi~d~~l~~~~--------- 69 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTH-SQMEIVGSF---DDGLDVLKFLQH-----NKVDAIFLDINIPSLD--------- 69 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHH-SCCEEEEEE---SCHHHHHHHHHH-----CCCSEEEECSSCSSSC---------
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhC-CCceEEEEe---CCHHHHHHHHHh-----CCCCEEEEecCCCCCC---------
Confidence 4578999999865431111111111 123322222 223344444432 4689999976554432
Q ss_pred HHHHHHHHHhhCCCCeEEEEecc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..+..+|++++..
T Consensus 70 g~~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 70 GVLLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp HHHHHHHHTTSTTCCEEEEEESC
T ss_pred HHHHHHHHHccCCCceEEEEeCC
Confidence 23567777877777888888764
No 63
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=77.60 E-value=13 Score=24.61 Aligned_cols=90 Identities=12% Similarity=0.266 Sum_probs=47.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCC-CCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGI-LDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~-~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
++.+|+++.|+-.........+.+......+.. . .+....+..+.... .....||+||+.+..-+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~-~---~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~-------- 73 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEI-A---KSGNQALDMLYGRNKENKIHPKLILLDINIPKMN-------- 73 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEE-E---SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC--------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEE-E---CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC--------
Confidence 457899999986543211111122111112222 1 22344444444211 1136799999987554432
Q ss_pred HHHHHHHHHHhhC--CCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQ--PQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~--p~~~ii~~~~~ 136 (211)
-.++++.+++.. |.++|++++..
T Consensus 74 -g~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 74 -GIEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp -HHHHHHHHTTSGGGTTCEEEEEESC
T ss_pred -HHHHHHHHHcCccccCCcEEEEeCC
Confidence 135677777765 78999998763
No 64
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=77.41 E-value=11 Score=24.98 Aligned_cols=79 Identities=10% Similarity=0.243 Sum_probs=46.0
Q ss_pred CcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-... ......+. ++.+. .. .+....+..+. ..+||+|++.+..-+..
T Consensus 5 ~~ILivdd~~~~~----~~l~~~L~~~g~~v~-~~---~~~~~a~~~l~-----~~~~dlvllD~~l~~~~--------- 62 (137)
T 3cfy_A 5 PRVLLVEDSTSLA----ILYKQYVKDEPYDIF-HV---ETGRDAIQFIE-----RSKPQLIILDLKLPDMS--------- 62 (137)
T ss_dssp CEEEEECSCTTHH----HHHHHHTTTSSSEEE-EE---SSHHHHHHHHH-----HHCCSEEEECSBCSSSB---------
T ss_pred ceEEEEeCCHHHH----HHHHHHHHhcCceEE-Ee---CCHHHHHHHHH-----hcCCCEEEEecCCCCCC---------
Confidence 4799999986533 22334443 23322 11 22334444443 24689999966544422
Q ss_pred HHHHHHHHHhhCCCCeEEEEecc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 63 g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 63 GEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHHhcCCCCCEEEEEec
Confidence 13567778888889999998864
No 65
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=76.73 E-value=13 Score=24.36 Aligned_cols=82 Identities=10% Similarity=0.120 Sum_probs=46.7
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC-CCCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN-NTEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N-D~~~~~~~ 109 (211)
....+|+++.|+-.... .+...+. ++.+..... +....+..+.. .+||+||+.+... +..
T Consensus 7 ~~~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~~~~---~~~~a~~~~~~-----~~~dlii~d~~~~~~~~----- 69 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAA----TLRIQLESLGYDVLGVFD---NGEEAVRCAPD-----LRPDIALVDIMLCGALD----- 69 (140)
T ss_dssp -CCCEEEEECCBHHHHH----HHHHHHHHHTCEEEEEES---SHHHHHHHHHH-----HCCSEEEEESSCCSSSC-----
T ss_pred CCCceEEEEECCHHHHH----HHHHHHHHCCCeeEEEEC---CHHHHHHHHHh-----CCCCEEEEecCCCCCCC-----
Confidence 45678999999865432 1222222 333332122 23344444432 4689999987653 322
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++. |.++|++++..
T Consensus 70 ----g~~~~~~l~~~-~~~~ii~ls~~ 91 (140)
T 3cg0_A 70 ----GVETAARLAAG-CNLPIIFITSS 91 (140)
T ss_dssp ----HHHHHHHHHHH-SCCCEEEEECC
T ss_pred ----HHHHHHHHHhC-CCCCEEEEecC
Confidence 13467777777 89999998864
No 66
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=75.95 E-value=14 Score=24.39 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=48.3
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--Cc--ceEEeccCCchhHHHHHHhhcCCCCC-----CCCcEEEEEeccCCC
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PL--HCLAFGIGGDKVEHCLWRVQDGILDS-----IKPKVIVILVGTNNT 103 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~--~~~n~g~~G~~~~~~~~~~~~~~~~~-----~~pd~Vvi~~G~ND~ 103 (211)
....+|+++.|+-.... .+...+. +. .+. .. .+....+..+....... ..||+||+.+..-+.
T Consensus 4 ~~~~~iLivdd~~~~~~----~l~~~L~~~g~~~~v~-~~---~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~ 75 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFS----TFQRLLQREGVVNPIY-RC---ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGT 75 (149)
T ss_dssp CTTSCEEEECCCHHHHH----HHHHHHHHTTBCSCEE-EE---CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSS
T ss_pred CCCccEEEEECCHHHHH----HHHHHHHHcCCCceEE-EE---CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCC
Confidence 45678999999865432 1222222 12 222 11 22344445444211111 679999997655442
Q ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCeEEEEecc
Q psy1995 104 EDSAENIADGILELIRLVQTKQ--PQADVVVLELL 136 (211)
Q Consensus 104 ~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~~~~ 136 (211)
. -.++++.+++.. |..+||+++..
T Consensus 76 ~---------g~~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 76 D---------GREVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp C---------HHHHHHHHTTSTTGGGSCEEEEESC
T ss_pred C---------HHHHHHHHHhCcccCCCeEEEEeCC
Confidence 2 235677787765 78899998864
No 67
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=75.87 E-value=5.2 Score=28.42 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=47.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|.-.... .+...+. ++.+.. . .+....+..+. ..+||+|++.+..-|..
T Consensus 6 ~~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~al~~~~-----~~~~dlvl~D~~lp~~~------- 65 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAG----TLARGLERRGYAVRQ-A---HNKDEALKLAG-----AEKFEFITVXLHLGNDS------- 65 (184)
T ss_dssp -CCEEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---CSHHHHHHHHT-----TSCCSEEEECSEETTEE-------
T ss_pred CCCeEEEEcCCHHHHH----HHHHHHHHCCCEEEE-e---CCHHHHHHHHh-----hCCCCEEEEeccCCCcc-------
Confidence 4578999999865432 1222221 233321 1 22334444443 45799999965433321
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
=.++++.+++..|.++|++++...
T Consensus 66 --g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 66 --GLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp --SHHHHHHHHHHCTTCEEEEEESSC
T ss_pred --HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 135778888888999999998743
No 68
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=75.33 E-value=16 Score=24.69 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=47.2
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
....+|+++.|.-.... .+.+.+. ++.+... .+....+..+. ..+||+||+.+...+..
T Consensus 5 ~~~~~ILivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~al~~l~-----~~~~dlii~D~~l~~~~------ 65 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAE----HLKHILEETGYQTEHV----RNGREAVRFLS-----LTRPDLIISDVLMPEMD------ 65 (154)
T ss_dssp --CCEEEEECSCHHHHH----HHHHHHHTTTCEEEEE----SSHHHHHHHHT-----TCCCSEEEEESCCSSSC------
T ss_pred cCCCcEEEEeCCHHHHH----HHHHHHHHCCCEEEEe----CCHHHHHHHHH-----hCCCCEEEEeCCCCCCC------
Confidence 34678999999865431 2233332 2333211 23344455443 35799999987655532
Q ss_pred HHHHHHHHHHHHhh--CCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQTK--QPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~~--~p~~~ii~~~~~ 136 (211)
-.++++.+++. .+.++||+++..
T Consensus 66 ---g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 66 ---GYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp ---HHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred ---HHHHHHHHHhCCCcCCCCEEEEECC
Confidence 23467777765 378899998863
No 69
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=75.27 E-value=6.2 Score=25.90 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=47.7
Q ss_pred CcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .+...+. ++.+.....++.. .+..+. ..+||+|++.+...+..
T Consensus 2 ~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~~~~~~~---a~~~~~-----~~~~dlii~d~~l~~~~--------- 60 (134)
T 3f6c_A 2 LNAIIIDDHPLAIA----AIRNLLIKNDIEILAELTEGGS---AVQRVE-----TLKPDIVIIDVDIPGVN--------- 60 (134)
T ss_dssp EEEEEECCCHHHHH----HHHHHHHHTTEEEEEEESSSTT---HHHHHH-----HHCCSEEEEETTCSSSC---------
T ss_pred eEEEEEcCCHHHHH----HHHHHHhhCCcEEEEEcCCHHH---HHHHHH-----hcCCCEEEEecCCCCCC---------
Confidence 46888888765331 1223332 2333323333333 333333 24689999987665532
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 114 ILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
-.++++.+++..|..+|++++....
T Consensus 61 g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 61 GIQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp HHHHHHHHHHTTCCSEEEEEECC--
T ss_pred hHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 2457888888899999999987543
No 70
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=75.27 E-value=9.6 Score=27.59 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=48.5
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCC---cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEP---LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~---~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
...+|+++.|.-... ......+.. +.++....+| ...+..+. ..+||+|++.+..-+..
T Consensus 4 ~~~~ilivdd~~~~~----~~l~~~L~~~~~~~vv~~~~~~---~~al~~~~-----~~~~dlvllD~~lp~~~------ 65 (215)
T 1a04_A 4 EPATILLIDDHPMLR----TGVKQLISMAPDITVVGEASNG---EQGIELAE-----SLDPDLILLDLNMPGMN------ 65 (215)
T ss_dssp CCEEEEEECSCHHHH----HHHHHHHTTCTTEEEEEEESSH---HHHHHHHH-----HHCCSEEEEETTSTTSC------
T ss_pred CceEEEEECCCHHHH----HHHHHHHhcCCCcEEEEEeCCH---HHHHHHHH-----hcCCCEEEEeCCCCCCc------
Confidence 346899999986533 123333332 2332222222 33344333 24689999977654432
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
=.++++.+++..|..+|++++..
T Consensus 66 ---g~~~~~~lr~~~~~~~ii~ls~~ 88 (215)
T 1a04_A 66 ---GLETLDKLREKSLSGRIVVFSVS 88 (215)
T ss_dssp ---HHHHHHHHHHSCCCSEEEEEECC
T ss_pred ---HHHHHHHHHHhCCCCcEEEEECC
Confidence 13578888888899999999874
No 71
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=73.98 E-value=8.1 Score=26.72 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=46.5
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCC---cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEP---LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~---~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
....+|+++.|+-.... .+...+.. ..++.... +....+..+. ...||+||+.+...+..
T Consensus 23 ~~~~~ILivdd~~~~~~----~l~~~L~~~~~~~~v~~~~---~~~~al~~l~-----~~~~dlvilD~~l~~~~----- 85 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRM----VLKDIIDSQPDMKVVGFAK---DGLEAVEKAI-----ELKPDVITMDIEMPNLN----- 85 (164)
T ss_dssp -CCEEEEEECSCHHHHH----HHHHHHHTSTTEEEEEEES---SHHHHHHHHH-----HHCCSEEEECSSCSSSC-----
T ss_pred cCccEEEEEcCCHHHHH----HHHHHHhcCCCeEEEEecC---CHHHHHHHhc-----cCCCCEEEEeCCCCCCC-----
Confidence 45678999999865431 12333321 12222222 2334444443 23689999976554432
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..| .+|++++..
T Consensus 86 ----g~~l~~~lr~~~~-~~ii~~s~~ 107 (164)
T 3t8y_A 86 ----GIEALKLIMKKAP-TRVIMVSSL 107 (164)
T ss_dssp ----HHHHHHHHHHHSC-CEEEEEESS
T ss_pred ----HHHHHHHHHhcCC-ceEEEEecC
Confidence 2457788888887 888888764
No 72
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=73.86 E-value=17 Score=24.09 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCC-CCCCHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN-TEDSAENI 110 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND-~~~~~~~~ 110 (211)
...+|+++.|+-.... .....+. ++.+... .+....+..+.. ...||+||+.+..-| ..
T Consensus 4 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~a~~~l~~----~~~~dlvi~D~~l~~~~~------ 65 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAK----TIANILNKYGYTVEIA----LTGEAAVEKVSG----GWYPDLILMDIELGEGMD------ 65 (140)
T ss_dssp --CEEEEECSCHHHHH----HHHHHHHHTTCEEEEE----SSHHHHHHHHHT----TCCCSEEEEESSCSSSCC------
T ss_pred CCcEEEEEeCCHHHHH----HHHHHHHHcCCEEEEe----cChHHHHHHHhc----CCCCCEEEEeccCCCCCC------
Confidence 3568999999865431 1222222 2333321 223444444432 367999999876532 21
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
-.++++.+++. |..+||+++....
T Consensus 66 ---g~~~~~~l~~~-~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 66 ---GVQTALAIQQI-SELPVVFLTAHTE 89 (140)
T ss_dssp ---HHHHHHHHHHH-CCCCEEEEESSSS
T ss_pred ---HHHHHHHHHhC-CCCCEEEEECCCC
Confidence 13466666665 7999999987543
No 73
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=73.80 E-value=23 Score=25.60 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=48.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHh-----hcCCCCCCCCcEEEEEeccCCCCCC
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRV-----QDGILDSIKPKVIVILVGTNNTEDS 106 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~-----~~~~~~~~~pd~Vvi~~G~ND~~~~ 106 (211)
...+|+++-|.-.... .....+. ++..+....+|......+..- .........||+||+.+...+..
T Consensus 60 ~~~~ILiVdDd~~~~~----~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~-- 133 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRK----VATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD-- 133 (206)
T ss_dssp TTCEEEEECSCHHHHH----HHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC--
T ss_pred CCCEEEEEeCCHHHHH----HHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC--
Confidence 4568999999865431 1222222 221222333333333333221 00122346899999987665532
Q ss_pred HHHHHHHHHHHHHHHHhh----CCCCeEEEEecc
Q psy1995 107 AENIADGILELIRLVQTK----QPQADVVVLELL 136 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~----~p~~~ii~~~~~ 136 (211)
=.++++.+++. .|..+||+++..
T Consensus 134 -------G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 134 -------GYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp -------HHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred -------HHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 13456666664 588999999874
No 74
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=73.56 E-value=5.4 Score=26.55 Aligned_cols=81 Identities=9% Similarity=0.111 Sum_probs=45.3
Q ss_pred CCcEEEEccchhcccCcchhHHhhcCCc-ceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFEPL-HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~~~-~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
..+|+++.|+-... ..+.+.+... .+. .. .+....+..+. ..+||+||+.+...+..
T Consensus 3 ~~~iLivdd~~~~~----~~l~~~l~~~~~v~-~~---~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~--------- 60 (140)
T 3n53_A 3 LKKILIIDQQDFSR----IELKNFLDSEYLVI-ES---KNEKEALEQID-----HHHPDLVILDMDIIGEN--------- 60 (140)
T ss_dssp CCEEEEECSCHHHH----HHHHHHHTTTSEEE-EE---SSHHHHHHHHH-----HHCCSEEEEETTC-------------
T ss_pred CCEEEEEeCCHHHH----HHHHHHHHhcceEE-Ee---CCHHHHHHHHh-----cCCCCEEEEeCCCCCCc---------
Confidence 46799999876533 2233333322 222 11 23344444443 24689999976544421
Q ss_pred HHHHHHHHHhhC--CCCeEEEEeccC
Q psy1995 114 ILELIRLVQTKQ--PQADVVVLELLP 137 (211)
Q Consensus 114 ~~~~i~~i~~~~--p~~~ii~~~~~p 137 (211)
-.++++.+++.. +..+|++++...
T Consensus 61 g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 61 SPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp --CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred HHHHHHHHHcCcccCCCCEEEEecCC
Confidence 134778888876 899999998743
No 75
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=71.80 E-value=18 Score=23.69 Aligned_cols=86 Identities=9% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-..... ....+ .++..+....+|......+..... ...+||+|++.+..-+.. .
T Consensus 2 ~~~ILivdD~~~~~~~----l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~---~~~~~dlvllD~~mp~~~----G--- 67 (133)
T 2r25_B 2 SVKILVVEDNHVNQEV----IKRMLNLEGIENIELACDGQEAFDKVKELTS---KGENYNMIFMDVQMPKVD----G--- 67 (133)
T ss_dssp CSCEEEECSCHHHHHH----HHHHHHHTTCCCEEEESSHHHHHHHHHHHHH---HTCCCSEEEECSCCSSSC----H---
T ss_pred CceEEEEcCCHHHHHH----HHHHHHHcCCceEEEECCHHHHHHHHHHHHh---cCCCCCEEEEeCCCCCCC----h---
Confidence 3579999998654321 22222 133233333444433333333221 125799999965443322 1
Q ss_pred HHHHHHHHHHhh-CCCCeEEEEecc
Q psy1995 113 GILELIRLVQTK-QPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~-~p~~~ii~~~~~ 136 (211)
.++++.+++. .+..+|++++..
T Consensus 68 --~~~~~~lr~~~~~~~~ii~lt~~ 90 (133)
T 2r25_B 68 --LLSTKMIRRDLGYTSPIVALTAF 90 (133)
T ss_dssp --HHHHHHHHHHSCCCSCEEEEESC
T ss_pred --HHHHHHHHhhcCCCCCEEEEECC
Confidence 2467777763 467789888864
No 76
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=71.64 E-value=4 Score=27.24 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCC-CCCcEEEEEeccC-CCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDS-IKPKVIVILVGTN-NTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~-~~pd~Vvi~~G~N-D~~~~~~~~~ 111 (211)
...+|+++.|+-.........+.+ ..++.+.. . .+....+.. +.. .+||+||+.+... +.
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~-~~~~~v~~-~---~~~~~a~~~-----l~~~~~~dlvi~D~~l~~~~-------- 64 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDN-IGEYDFIE-V---ENLKKFYSI-----FKDLDSITLIIMDIAFPVEK-------- 64 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-HCCCEEEE-E---CSHHHHHTT-----TTTCCCCSEEEECSCSSSHH--------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-ccCccEEE-E---CCHHHHHHH-----HhcCCCCcEEEEeCCCCCCC--------
Confidence 356899999886543111111122 12333331 1 122333332 234 7899999965433 21
Q ss_pred HHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
+-.++++.+++ ..|.++|++++..
T Consensus 65 -~g~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 65 -EGLEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp -HHHHHHHHHHHSGGGTTCCEEEEESC
T ss_pred -cHHHHHHHHHhCcccCCCCEEEEeCC
Confidence 12457888888 7899999999864
No 77
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=69.19 E-value=6.7 Score=26.28 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=48.1
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC---CcceEEeccCCchhHHHHHHhhcCCCCC-CCCcEEEEEeccCCCCCCHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE---PLHCLAFGIGGDKVEHCLWRVQDGILDS-IKPKVIVILVGTNNTEDSAE 108 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~---~~~~~n~g~~G~~~~~~~~~~~~~~~~~-~~pd~Vvi~~G~ND~~~~~~ 108 (211)
.+..+|+++.|.-.... .+...+. .+.+.... ++ ...+..+. .. ..||+||+.+...|.
T Consensus 18 ~~~~~ilivdd~~~~~~----~l~~~L~~~g~~~v~~~~-~~---~~~~~~~~----~~~~~~dlvi~D~~l~~~----- 80 (146)
T 4dad_A 18 QGMINILVASEDASRLA----HLARLVGDAGRYRVTRTV-GR---AAQIVQRT----DGLDAFDILMIDGAALDT----- 80 (146)
T ss_dssp GGGCEEEEECSCHHHHH----HHHHHHHHHCSCEEEEEC-CC---HHHHTTCH----HHHTTCSEEEEECTTCCH-----
T ss_pred CCCCeEEEEeCCHHHHH----HHHHHHhhCCCeEEEEeC-CH---HHHHHHHH----hcCCCCCEEEEeCCCCCc-----
Confidence 45679999999865431 1222222 13333321 11 22222211 12 679999997765442
Q ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 109 NIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
+-.++++.+++.+|..+||+++..
T Consensus 81 ----~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 81 ----AELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ----HHHHHHHHHHHHCTTCEEEEEESC
T ss_pred ----cHHHHHHHHHHhCCCCcEEEEeCC
Confidence 124577888888999999999864
No 78
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=69.11 E-value=16 Score=26.47 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEec------cCCCCccchhhHHHHHHHHHHHHHhCC
Q psy1995 109 NIADGILELIRLVQTKQPQADVVVLEL------LPRGKLINKLWTKNLATNQILADKLSP 162 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~p~~~ii~~~~------~p~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (211)
.+.+.+.++++.+++. ..++|+++. .|.+.....+++..-.+|+.+.+.|.+
T Consensus 110 ~~~~~~~~ll~~l~~~--~~~~vlVsNEVG~GiVP~~~~~R~frD~~G~lnq~lA~~ad~ 167 (180)
T 1c9k_A 110 AIDDEIQILIAACQRC--PAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADE 167 (180)
T ss_dssp HHHHHHHHHHHHHHHC--CSEEEEECCCCCSSCCCSSHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHcc--CCCEEEEEccccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence 3666788889888886 677777774 344433345678899999999998875
No 79
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=67.92 E-value=16 Score=23.46 Aligned_cols=79 Identities=9% Similarity=0.212 Sum_probs=46.0
Q ss_pred CcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .....+. ++.+. .. .+....+..+. ..+||+|++.+...+..
T Consensus 4 ~~ilivdd~~~~~~----~l~~~l~~~~~~v~-~~---~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~--------- 61 (124)
T 1srr_A 4 EKILIVDDQSGIRI----LLNEVFNKEGYQTF-QA---ANGLQALDIVT-----KERPDLVLLDMKIPGMD--------- 61 (124)
T ss_dssp CEEEEECSCHHHHH----HHHHHHHTTTCEEE-EE---SSHHHHHHHHH-----HHCCSEEEEESCCTTCC---------
T ss_pred ceEEEEeCCHHHHH----HHHHHHHHCCcEEE-Ee---CCHHHHHHHHh-----ccCCCEEEEecCCCCCC---------
Confidence 57999998865331 1222222 23332 21 22334444443 24689999977654432
Q ss_pred HHHHHHHHHhhCCCCeEEEEecc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 62 g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 62 GIEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHHHhCCCCCEEEEEcc
Confidence 13467778887889999998864
No 80
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=67.55 E-value=22 Score=22.96 Aligned_cols=80 Identities=9% Similarity=0.164 Sum_probs=43.6
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|.-.... .+...+. ++.+... .+....+..+. ..+||+||+.+...|..
T Consensus 5 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~a~~~l~-----~~~~dlii~d~~l~~~~------- 64 (132)
T 3lte_A 5 QSKRILVVDDDQAMAA----AIERVLKRDHWQVEIA----HNGFDAGIKLS-----TFEPAIMTLDLSMPKLD------- 64 (132)
T ss_dssp --CEEEEECSCHHHHH----HHHHHHHHTTCEEEEE----SSHHHHHHHHH-----HTCCSEEEEESCBTTBC-------
T ss_pred CCccEEEEECCHHHHH----HHHHHHHHCCcEEEEe----CCHHHHHHHHH-----hcCCCEEEEecCCCCCC-------
Confidence 4578999998865431 1222222 2333321 22344444443 35789999987665532
Q ss_pred HHHHHHHHHHHhhC--CCCeEEEEec
Q psy1995 112 DGILELIRLVQTKQ--PQADVVVLEL 135 (211)
Q Consensus 112 ~~~~~~i~~i~~~~--p~~~ii~~~~ 135 (211)
-.++++.+++.. +...|++++.
T Consensus 65 --g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 65 --GLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp --HHHHHHHHHTTTCSSCCEEEEECC
T ss_pred --HHHHHHHHHhcCccCCCeEEEEeC
Confidence 245777888765 3556665543
No 81
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=66.82 E-value=10 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=28.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.+||+|++.+...+.. -.++++.+++..|..+|++++..
T Consensus 48 ~~~dlvilD~~lp~~~---------g~~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMT---------GLEVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HCCSEEEECSSCSSSC---------HHHHHHHHHHTTCSCEEEEEESC
T ss_pred cCCCEEEEecCCCCCC---------HHHHHHHHHHHCCCCcEEEEecC
Confidence 4689999966544432 13567788888889999999864
No 82
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=66.19 E-value=19 Score=27.87 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=45.7
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.+..-|+||.|+..-+.+. + |+.=++.+|-|... .+.+++.+...++++.+.+. +++.+++.+
T Consensus 7 ~IgvfDSGvGGltv~~~i~~~----l----P~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~--g~~~IVIAC 75 (269)
T 3ist_A 7 AIGFIDSGVGGLTVVREVLKQ----L----PHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDR--GIKMLVIAC 75 (269)
T ss_dssp CEEEEESSSTTHHHHHHHHHH----C----TTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHT--TCSEEEECC
T ss_pred cEEEEECCccHHHHHHHHHHH----C----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 456788899998876555442 2 33335667776654 67788888888888888877 788887765
No 83
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=65.94 E-value=15 Score=28.09 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=45.5
Q ss_pred cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+.+..-|+||.++..-+.+. -|+..++.+|.+... .+.+++.+.+.+.++.+.+. +++.+++.+
T Consensus 3 igvfDSG~GGltv~~~l~~~--------lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~--g~d~iviaC 70 (255)
T 2jfz_A 3 IGVFDSGVGGFSVLKSLLKA--------RLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPH--EIELLIVAC 70 (255)
T ss_dssp EEEEESSSTTHHHHHHHHHT--------TCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGG--CCSCEEECC
T ss_pred EEEEECCccHHHHHHHHHHH--------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 35677899998876655532 345667788877554 56778888888888888777 777777665
No 84
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=65.50 E-value=4.9 Score=28.89 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=43.4
Q ss_pred CcEEEEccchhcccC------cc--hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 36 PELVFIGDSLISFLT------QT--QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 36 ~~il~iGDS~t~g~~------~~--~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
.-|+.+||+.+.+.. +. ....+.+ .+..+...++-++....+...+.. .....+.|+||...|+-
T Consensus 18 v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~-~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 18 FYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTD-ALSIDEVDVIISTGGTG 92 (178)
T ss_dssp EEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHH-HHTCTTCCEEEEESCCS
T ss_pred EEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH-HHhcCCCCEEEecCCcc
Confidence 458889999876531 11 1122333 367788899999988887776653 22346789999988865
No 85
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=65.29 E-value=12 Score=25.01 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=45.7
Q ss_pred hcCCCcEEEEccchhcccCcchhHHhhcCC---cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHH
Q psy1995 32 KESEPELVFIGDSLISFLTQTQIWHNLFEP---LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAE 108 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~~~~~~~~~~---~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 108 (211)
...+++|+++.|+-... ......+.. +.++.... +....+..+.. ..+||+||+.+...+..
T Consensus 10 ~~~~~~vlivdd~~~~~----~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~----~~~~dlvilD~~l~~~~---- 74 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMR----LYIASFIKTLPDFKVVAQAA---NGQEALDKLAA----QPNVDLILLDIEMPVMD---- 74 (145)
T ss_dssp -CCSEEEEEECSCHHHH----HHHHHHHTTCTTEEEEEEES---SHHHHHHHHHH----CTTCCEEEECTTSCCCT----
T ss_pred CCCCCeEEEEcCCHHHH----HHHHHHHHhCCCceEEEEEC---CHHHHHHHHhc----CCCCCEEEEeCCCCCCC----
Confidence 45678899999986543 223334332 23222222 23344444432 12799999976544432
Q ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 109 NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
-.++++.+++..+ .++++++.
T Consensus 75 -----g~~~~~~lr~~~~-~~iiil~~ 95 (145)
T 3kyj_B 75 -----GMEFLRHAKLKTR-AKICMLSS 95 (145)
T ss_dssp -----TCHHHHHHHHHCC-CEEC-CBS
T ss_pred -----HHHHHHHHHhcCC-CCeEEEEE
Confidence 1246777787766 77777765
No 86
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=65.12 E-value=25 Score=22.60 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=43.9
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .....+ .++.+.. . .+....+..+. ..+||+|++.+..-+..
T Consensus 3 ~~ILivdd~~~~~~----~l~~~l~~~g~~v~~-~---~~~~~al~~l~-----~~~~dlvllD~~~p~~~--------- 60 (122)
T 3gl9_A 3 KKVLLVDDSAVLRK----IVSFNLKKEGYEVIE-A---ENGQIALEKLS-----EFTPDLIVLXIMMPVMD--------- 60 (122)
T ss_dssp CEEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---SSHHHHHHHHT-----TBCCSEEEECSCCSSSC---------
T ss_pred ceEEEEeCCHHHHH----HHHHHHHHCCcEEEE-e---CCHHHHHHHHH-----hcCCCEEEEeccCCCCc---------
Confidence 47899998765331 122222 1334432 1 22334444443 35799999966544432
Q ss_pred HHHHHHHHHhh--CCCCeEEEEec
Q psy1995 114 ILELIRLVQTK--QPQADVVVLEL 135 (211)
Q Consensus 114 ~~~~i~~i~~~--~p~~~ii~~~~ 135 (211)
=.++++.+++. ++..+|++++.
T Consensus 61 g~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 61 GFTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHHHhcccccCCCEEEEec
Confidence 13467777664 46889998886
No 87
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=64.81 E-value=28 Score=23.22 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=45.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--Ccc-eEEeccCCchhHHHHHHhhcC--CCCCCCCcEEEEEeccCCCCCCHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLH-CLAFGIGGDKVEHCLWRVQDG--ILDSIKPKVIVILVGTNNTEDSAE 108 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~-~~n~g~~G~~~~~~~~~~~~~--~~~~~~pd~Vvi~~G~ND~~~~~~ 108 (211)
+..+|+++.|+-.... .....+. +.. .+.... +....+..+... .....+||+|++.+..-+..
T Consensus 7 ~~~~ILivdd~~~~~~----~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~---- 75 (149)
T 1i3c_A 7 PPKVILLVEDSKADSR----LVQEVLKTSTIDHELIILR---DGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKD---- 75 (149)
T ss_dssp CCEEEEEECCCHHHHH----HHHHHHHSCCSCEEEEEEC---SHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSC----
T ss_pred CCCeEEEEECCHHHHH----HHHHHHHhcCCCccEEEeC---CHHHHHHHHHhccccccCCCCCEEEEeCCCCCCc----
Confidence 4568999999865431 1223332 111 111111 223444444320 00125799999966544332
Q ss_pred HHHHHHHHHHHHHHhhC--CCCeEEEEecc
Q psy1995 109 NIADGILELIRLVQTKQ--PQADVVVLELL 136 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~--p~~~ii~~~~~ 136 (211)
=.++++.+++.. +..+|++++..
T Consensus 76 -----g~~l~~~l~~~~~~~~~piiils~~ 100 (149)
T 1i3c_A 76 -----GREVLAEIKQNPDLKRIPVVVLTTS 100 (149)
T ss_dssp -----HHHHHHHHHHCTTTTTSCEEEEESC
T ss_pred -----HHHHHHHHHhCcCcCCCeEEEEECC
Confidence 134677777643 67889888764
No 88
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=64.51 E-value=27 Score=22.90 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=45.8
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
++.+|+++.|+-.... .....+ .++.+.. . .+....+..+. ..+||+|++.+..-+..
T Consensus 3 ~~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~al~~~~-----~~~~dlvl~D~~lp~~~------- 62 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAE----MLELVLRGAGYEVRR-A---ASGEEALQQIY-----KNLPDALICDVLLPGID------- 62 (136)
T ss_dssp CCCEEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---SSHHHHHHHHH-----HSCCSEEEEESCCSSSC-------
T ss_pred CCCEEEEEeCCHHHHH----HHHHHHHHCCCEEEE-e---CCHHHHHHHHH-----hCCCCEEEEeCCCCCCC-------
Confidence 3568999999865431 122222 2333332 1 22344444443 35799999977655432
Q ss_pred HHHHHHHHHHHhh--CCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTK--QPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~--~p~~~ii~~~~~ 136 (211)
-.++++.+++. .+..+|++++..
T Consensus 63 --g~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 63 --GYTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp --HHHHHHHHHHSGGGTTCCEEEEECT
T ss_pred --HHHHHHHHHcCCCcCCccEEEEecC
Confidence 13466667663 467889988863
No 89
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=64.23 E-value=13 Score=23.70 Aligned_cols=80 Identities=10% Similarity=0.290 Sum_probs=45.6
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .....+ .++.++....+| ...+..+. ..+||+|++.+..-+..
T Consensus 3 ~~ilivdd~~~~~~----~l~~~l~~~g~~vv~~~~~~---~~a~~~~~-----~~~~dlil~D~~l~~~~--------- 61 (120)
T 1tmy_A 3 KRVLIVDDAAFMRM----MLKDIITKAGYEVAGEATNG---REAVEKYK-----ELKPDIVTMDITMPEMN--------- 61 (120)
T ss_dssp CEEEEECSCHHHHH----HHHHHHHHTTCEEEEEESSH---HHHHHHHH-----HHCCSEEEEECSCGGGC---------
T ss_pred ceEEEEcCcHHHHH----HHHHHHhhcCcEEEEEECCH---HHHHHHHH-----hcCCCEEEEeCCCCCCc---------
Confidence 47889988765331 122222 233332222222 33444443 23689999976554321
Q ss_pred HHHHHHHHHhhCCCCeEEEEecc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 62 g~~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 62 GIDAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECT
T ss_pred HHHHHHHHHhhCCCCeEEEEeCC
Confidence 13567788888899999998863
No 90
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=64.05 E-value=24 Score=27.03 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=43.6
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.+...|+||.+...-+.+. -|+..++.+|-++.. .+.+++.+.+.+.++.+.+. +++.+++.+
T Consensus 5 ~IgvfDSGvGGltv~~~i~~~--------lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~--g~d~iviaC 73 (267)
T 2gzm_A 5 AIGVIDSGVGGLTVAKELIRQ--------LPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDL--NIKMLVIAC 73 (267)
T ss_dssp CEEEEESSSTTHHHHHHHHHH--------CTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTT--TCSEEEECC
T ss_pred cEEEEeCCccHHHHHHHHHHH--------CCCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 356777888887766544432 234446677877654 56777777777788877765 777777764
No 91
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=63.91 E-value=16 Score=24.54 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=48.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC-CcceEEeccCCchhHHHHHHhhcCCCCCCC-CcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE-PLHCLAFGIGGDKVEHCLWRVQDGILDSIK-PKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~-pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|.-... ..+...+. ++.+... .+....+..+.. .+ +|+||+.+...+..
T Consensus 3 ~~~~ILivdd~~~~~----~~l~~~L~~~~~v~~~----~~~~~a~~~l~~-----~~~~dlvi~D~~l~~~~------- 62 (151)
T 3kcn_A 3 LNERILLVDDDYSLL----NTLKRNLSFDFEVTTC----ESGPEALACIKK-----SDPFSVIMVDMRMPGME------- 62 (151)
T ss_dssp CCCEEEEECSCHHHH----HHHHHHHTTTSEEEEE----SSHHHHHHHHHH-----SCCCSEEEEESCCSSSC-------
T ss_pred CCCeEEEEeCCHHHH----HHHHHHhccCceEEEe----CCHHHHHHHHHc-----CCCCCEEEEeCCCCCCc-------
Confidence 346899999876532 11223332 2333311 233444454432 34 59999987665532
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 63 --g~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 63 --GTEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp --HHHHHHHHHHHCSSCEEEEEECG
T ss_pred --HHHHHHHHHhcCCCcEEEEEECC
Confidence 24577788888899999998863
No 92
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=63.88 E-value=6.2 Score=26.66 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=53.3
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc-CCcceEEeccCCchhHHH--HHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF-EPLHCLAFGIGGDKVEHC--LWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~-~~~~~~n~g~~G~~~~~~--~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
.+.+|.++|-|-..+-.+...+..+. .++.++-..-.+...... ...+. .++ . +|+++|.. .++..
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~--dlp-~-vDlavi~~-------p~~~v 71 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERP--VIE-G-VDTVTLYI-------NPQNQ 71 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCC--CCT-T-CCEEEECS-------CHHHH
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChH--HCC-C-CCEEEEEe-------CHHHH
Confidence 45689999999765532222222111 123333222122222111 11121 343 4 99999854 23333
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEe
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQ 173 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD 173 (211)
..+++.+.++ +++.+|++.-- .++.+.+.|++ .++.++.
T Consensus 72 ----~~~v~e~~~~--g~k~v~~~~G~--------------~~~e~~~~a~~----~Girvv~ 110 (122)
T 3ff4_A 72 ----LSEYNYILSL--KPKRVIFNPGT--------------ENEELEEILSE----NGIEPVI 110 (122)
T ss_dssp ----GGGHHHHHHH--CCSEEEECTTC--------------CCHHHHHHHHH----TTCEEEE
T ss_pred ----HHHHHHHHhc--CCCEEEECCCC--------------ChHHHHHHHHH----cCCeEEC
Confidence 3355566666 66666765421 13467777877 8888885
No 93
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=63.71 E-value=26 Score=22.43 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=45.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
+..+|+++.|+-...- .....+. ++..+... .+....+..+. ..+||+|++.+..-+..
T Consensus 3 ~~~~ilivdd~~~~~~----~l~~~l~~~~~~~v~~~---~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~------- 63 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRR----IVRNLLKELGFNNVEEA---EDGVDALNKLQ-----AGGYGFVISDWNMPNMD------- 63 (128)
T ss_dssp TTCCEEEECSCHHHHH----HHHHHHHHTTCCCEEEE---SSHHHHHHHHT-----TCCCCEEEEESCCSSSC-------
T ss_pred CccEEEEECCCHHHHH----HHHHHHHHcCCcEEEee---CCHHHHHHHHH-----hcCCCEEEEeCCCCCCC-------
Confidence 4568999999765331 1222221 22111111 12234444443 35699999977655432
Q ss_pred HHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
-.++++.+++ ..|..+|++++..
T Consensus 64 --g~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 64 --GLELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp --HHHHHHHHHC--CCTTCCEEEEESS
T ss_pred --HHHHHHHHHhhcccCCCcEEEEecC
Confidence 1346777776 4578889988763
No 94
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=63.67 E-value=27 Score=22.56 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=46.4
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC-CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE-PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
+.+|+++.|+-... ..+...+. ++.+... .+....+..+. ..+||+||+.+...+..
T Consensus 4 ~~~ilivdd~~~~~----~~l~~~l~~~~~v~~~----~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~--------- 61 (133)
T 3nhm_A 4 KPKVLIVENSWTMR----ETLRLLLSGEFDCTTA----ADGASGLQQAL-----AHPPDVLISDVNMDGMD--------- 61 (133)
T ss_dssp -CEEEEECSCHHHH----HHHHHHHTTTSEEEEE----SSHHHHHHHHH-----HSCCSEEEECSSCSSSC---------
T ss_pred CCEEEEEcCCHHHH----HHHHHHHhCCcEEEEE----CCHHHHHHHHh-----cCCCCEEEEeCCCCCCC---------
Confidence 46899999886543 11223332 2333221 23344444443 24699999976544432
Q ss_pred HHHHHHHHHhh--CCCCeEEEEeccC
Q psy1995 114 ILELIRLVQTK--QPQADVVVLELLP 137 (211)
Q Consensus 114 ~~~~i~~i~~~--~p~~~ii~~~~~p 137 (211)
-.++++.+++. .|..+|++++...
T Consensus 62 g~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 62 GYALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp HHHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred HHHHHHHHHhCCccCCCCEEEEeCCC
Confidence 24567777776 5689999998743
No 95
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=63.43 E-value=14 Score=23.33 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=44.7
Q ss_pred cEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGI 114 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~ 114 (211)
+|+++.|+-.... .....+. ++.+.. . .+....+..+. ..+||+|++.+...+.. -
T Consensus 3 ~ilivdd~~~~~~----~l~~~l~~~~~~v~~-~---~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~---------g 60 (116)
T 3a10_A 3 RILVVDDEPNIRE----LLKEELQEEGYEIDT-A---ENGEEALKKFF-----SGNYDLVILDIEMPGIS---------G 60 (116)
T ss_dssp EEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---SSHHHHHHHHH-----HSCCSEEEECSCCSSSC---------H
T ss_pred EEEEEeCCHHHHH----HHHHHHHHCCCEEEE-e---CCHHHHHHHHh-----cCCCCEEEEECCCCCCC---------H
Confidence 6888888865431 1222221 333321 1 12334444443 24689999976554432 1
Q ss_pred HHHHHHHHhhCCCCeEEEEecc
Q psy1995 115 LELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.++++.+++..|..+|++++..
T Consensus 61 ~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 61 LEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHccCCCCeEEEEECC
Confidence 3567788888889999998863
No 96
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=61.81 E-value=25 Score=22.94 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=44.4
Q ss_pred hcCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 32 KESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
.....+|+++.|+-.... .+...+. ++.+.. -.+....+..+.. ..||+|| +-+.+
T Consensus 15 ~~~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~----~~~~~~al~~l~~-----~~~dlvi-~~~~~-------- 72 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGG----EIEKGLNVKGFMADV----TESLEDGEYLMDI-----RNYDLVM-VSDKN-------- 72 (137)
T ss_dssp CTTCSEEEEECSCHHHHH----HHHHHHHHTTCEEEE----ESCHHHHHHHHHH-----SCCSEEE-ECSTT--------
T ss_pred CCCCCeEEEEeCCHHHHH----HHHHHHHHcCcEEEE----eCCHHHHHHHHHc-----CCCCEEE-EcCcc--------
Confidence 346678999999865432 1222222 333331 1223444444442 4689888 22222
Q ss_pred HHHHHHHHHHHHHhhCC-CCeEEEEecc
Q psy1995 110 IADGILELIRLVQTKQP-QADVVVLELL 136 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p-~~~ii~~~~~ 136 (211)
-.++++.+++. | .++||+++..
T Consensus 73 ----g~~~~~~l~~~-~~~~~ii~ls~~ 95 (137)
T 2pln_A 73 ----ALSFVSRIKEK-HSSIVVLVSSDN 95 (137)
T ss_dssp ----HHHHHHHHHHH-STTSEEEEEESS
T ss_pred ----HHHHHHHHHhc-CCCccEEEEeCC
Confidence 13567777777 8 8999998864
No 97
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=60.60 E-value=27 Score=22.64 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=47.0
Q ss_pred CCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-.... .+...+ .++.+.. . .+....+..+. ..+||+|++.+...+..
T Consensus 3 ~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~-------- 61 (136)
T 1mvo_A 3 NKKILVVDDEESIVT----LLQYNLERSGYDVIT-A---SDGEEALKKAE-----TEKPDLIVLDVMLPKLD-------- 61 (136)
T ss_dssp CCEEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---SSHHHHHHHHH-----HHCCSEEEEESSCSSSC--------
T ss_pred CCEEEEEECCHHHHH----HHHHHHHHCCcEEEE-e---cCHHHHHHHHh-----hcCCCEEEEecCCCCCC--------
Confidence 357999998864321 122222 1233321 1 22233444433 24689999977655432
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 113 GILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
-.++++.+++..|..+|++++....
T Consensus 62 -g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (136)
T 1mvo_A 62 -GIEVCKQLRQQKLMFPILMLTAKDE 86 (136)
T ss_dssp -HHHHHHHHHHTTCCCCEEEEECTTC
T ss_pred -HHHHHHHHHcCCCCCCEEEEECCCC
Confidence 1346778888878999999887543
No 98
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=59.21 E-value=5.5 Score=29.17 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=50.5
Q ss_pred hcCCCcEEEEccchhcccCcc---hhHHhhc-----CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCC-
Q psy1995 32 KESEPELVFIGDSLISFLTQT---QIWHNLF-----EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN- 102 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~---~~~~~~~-----~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND- 102 (211)
+..+..|+.+||.+..|-... ....+.+ .+..+...++-++....+.+.+.. .+...+.|+||+..|+-=
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~-a~~~~~~DlVIttGGtg~g 91 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLID-WCDEKELNLILTTGGTGFA 91 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHH-HHHTSCCSEEEEESCCSSS
T ss_pred CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHH-HhhcCCCCEEEEcCCCCCC
Confidence 345567999999998875221 1122222 355677888888888888877765 332247899999887642
Q ss_pred -CCCCHHHHHH
Q psy1995 103 -TEDSAENIAD 112 (211)
Q Consensus 103 -~~~~~~~~~~ 112 (211)
...+++.+.+
T Consensus 92 ~~D~t~eal~~ 102 (189)
T 1jlj_A 92 PRDVTPEATKE 102 (189)
T ss_dssp TTCCHHHHHHH
T ss_pred CcccHHHHHHH
Confidence 2245554443
No 99
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=59.06 E-value=4.5 Score=27.91 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=54.8
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhc-CCcceEEeccCCchhHHH--HHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLF-EPLHCLAFGIGGDKVEHC--LWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~-~~~~~~n~g~~G~~~~~~--~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
..+.+|.++|-|-..|..+......+. .++.++...-.+...... ...+. .+ ...+|++++.+- ++.
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~--el-~~~vDlvii~vp-------~~~ 81 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVR--EL-PKDVDVIVFVVP-------PKV 81 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGG--GS-CTTCCEEEECSC-------HHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHH--Hh-CCCCCEEEEEeC-------HHH
Confidence 356789999998766643322212111 233444333333222111 11111 22 246899999653 222
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
..++++.+.+. +.+.+++.. .. +++.+.+.|++ .++.+++.+..
T Consensus 82 ----v~~v~~~~~~~--g~~~i~~~~--~~------------~~~~l~~~a~~----~Gi~~igpnc~ 125 (138)
T 1y81_A 82 ----GLQVAKEAVEA--GFKKLWFQP--GA------------ESEEIRRFLEK----AGVEYSFGRCI 125 (138)
T ss_dssp ----HHHHHHHHHHT--TCCEEEECT--TS------------CCHHHHHHHHH----HTCEEECSCCH
T ss_pred ----HHHHHHHHHHc--CCCEEEEcC--cc------------HHHHHHHHHHH----CCCEEEcCCcc
Confidence 33444445554 455555433 11 13556677776 79999986643
No 100
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=58.08 E-value=23 Score=27.74 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=34.8
Q ss_pred CCCcEEEEEeccCCCC-CCHHH-H---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN-I---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~-~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+..+ + ..-+.++.+.+.+.+|++.+++++.
T Consensus 68 ~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 68 KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 4689999999987432 33333 2 3457888889999999999888884
No 101
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=57.97 E-value=18 Score=23.57 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=46.4
Q ss_pred CCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-.... .+...+ .++.+. ... +....+..+. ...||+|++.+..-|..
T Consensus 3 ~~~Ilivdd~~~~~~----~l~~~L~~~g~~v~-~~~---~~~~al~~~~-----~~~~dlvl~D~~l~~~~-------- 61 (132)
T 3crn_A 3 LKRILIVDDDTAILD----STKQILEFEGYEVE-IAA---TAGEGLAKIE-----NEFFNLALFXIKLPDME-------- 61 (132)
T ss_dssp CCEEEEECSCHHHHH----HHHHHHHHTTCEEE-EES---SHHHHHHHHH-----HSCCSEEEECSBCSSSB--------
T ss_pred ccEEEEEeCCHHHHH----HHHHHHHHCCceEE-EeC---CHHHHHHHHh-----cCCCCEEEEecCCCCCc--------
Confidence 357999998865431 122222 233333 212 2234444443 24689999976554432
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 62 -g~~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 62 -GTELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp -HHHHHHHHHHHCTTSEEEEEESC
T ss_pred -hHHHHHHHHhhCCCCcEEEEecc
Confidence 13567778888889999998864
No 102
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=57.89 E-value=35 Score=21.99 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .....+. ++..+.... +....+..+.. ...||+|++.+..-+..
T Consensus 4 ~~~~iLivdd~~~~~~----~l~~~L~~~g~~~v~~~~---~~~~a~~~~~~----~~~~dlvi~D~~~p~~~------- 65 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRR----IIKNTLSRLGYEDVLEAE---HGVEAWEKLDA----NADTKVLITDWNMPEMN------- 65 (129)
T ss_dssp --CCEEEECSCHHHHH----HHHHHHHHTTCCCEEEES---SHHHHHHHHHH----CTTCCEEEECSCCSSSC-------
T ss_pred CCcEEEEEeCCHHHHH----HHHHHHHHcCCcEEEEeC---CHHHHHHHHHh----CCCCCEEEEeCCCCCCC-------
Confidence 3568999999865432 1222221 222122222 22333443332 24689999855443322
Q ss_pred HHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
=.++++.+++ .+|..+|++++..
T Consensus 66 --g~~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 66 --GLDLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp --HHHHHHHHHTSTTCTTCCEEEEESC
T ss_pred --HHHHHHHHHhcCCCCCCeEEEEeCC
Confidence 1346777777 3478899998863
No 103
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=57.77 E-value=19 Score=28.75 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHH-HH---HHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN-IA---DGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~-~~---~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|+.-.. .+..+ +. ..+.++++.+.+..|++.+++++.
T Consensus 72 ~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 72 KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 4689999999986432 33322 32 457888999999999998888775
No 104
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=57.69 E-value=8.3 Score=25.43 Aligned_cols=82 Identities=4% Similarity=-0.064 Sum_probs=47.2
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--C-cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--P-LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~-~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 109 (211)
....+|+++.|+-.... .+...+. + +.+... .++ ... +. .+...+||+||+.+..-+..
T Consensus 12 ~~~~~ilivdd~~~~~~----~l~~~L~~~g~~~v~~~-~~~---~~a---~~--~l~~~~~dlvi~D~~l~~~~----- 73 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKR----DVATRLDALAIYDVRVS-ETD---DFL---KG--PPADTRPGIVILDLGGGDLL----- 73 (135)
T ss_dssp -CCEEEEEECSCHHHHH----HHHHHHHHTSSEEEEEE-CGG---GGG---GC--CCTTCCCSEEEEEEETTGGG-----
T ss_pred CCCcEEEEEcCCHHHHH----HHHHHHhhcCCeEEEEe-ccH---HHH---HH--HHhccCCCEEEEeCCCCCch-----
Confidence 34568999999865431 1223322 2 333311 111 222 22 23357899999977544321
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|..+|++++..
T Consensus 74 ----g~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 74 ----GKPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp ----GSTTHHHHHGGGTTCCEEEEESC
T ss_pred ----HHHHHHHHHhhCCCCcEEEEeCC
Confidence 12468888888889999999863
No 105
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=57.63 E-value=34 Score=21.86 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .+...+. ++..+... .+....+..+. ..+||+|++.+...+..
T Consensus 5 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~~v~~~---~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~------- 65 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRL----LLGDALQQLGFKQITAA---GDGEQGMKIMA-----QNPHHLVISDFNMPKMD------- 65 (129)
T ss_dssp SCCCEEEECSSHHHHH----HHHHHHHTTTCSCEECC---SSHHHHHHHHH-----TSCCSEEEECSSSCSSC-------
T ss_pred ccCeEEEEcCCHHHHH----HHHHHHHHCCCcEEEec---CCHHHHHHHHH-----cCCCCEEEEeCCCCCCC-------
Confidence 3468999999865431 1222222 22111111 12334444443 24689999966554432
Q ss_pred HHHHHHHHHHHhh--CCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTK--QPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~--~p~~~ii~~~~~ 136 (211)
-.++++.+++. .|..+|++++..
T Consensus 66 --g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 66 --GLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp --HHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred --HHHHHHHHhcCccccCCCEEEEeCC
Confidence 12467777764 578888888753
No 106
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=57.59 E-value=27 Score=21.61 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=46.2
Q ss_pred CcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-... ..+...+. ++.+... .+....+..+.. ..||+|++.+...+..
T Consensus 2 ~~iliv~~~~~~~----~~l~~~l~~~g~~v~~~----~~~~~~~~~l~~-----~~~dlii~d~~~~~~~--------- 59 (119)
T 2j48_A 2 GHILLLEEEDEAA----TVVCEMLTAAGFKVIWL----VDGSTALDQLDL-----LQPIVILMAWPPPDQS--------- 59 (119)
T ss_dssp CEEEEECCCHHHH----HHHHHHHHHTTCEEEEE----SCHHHHHHHHHH-----HCCSEEEEECSTTCCT---------
T ss_pred CEEEEEeCCHHHH----HHHHHHHHhCCcEEEEe----cCHHHHHHHHHh-----cCCCEEEEecCCCCCC---------
Confidence 4688888876433 11222222 3333321 133444444432 3689999987665432
Q ss_pred HHHHHHHHHhhC--CCCeEEEEeccC
Q psy1995 114 ILELIRLVQTKQ--PQADVVVLELLP 137 (211)
Q Consensus 114 ~~~~i~~i~~~~--p~~~ii~~~~~p 137 (211)
-.++++.+++.. +..+|++++..+
T Consensus 60 ~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 60 CLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp HHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred HHHHHHHHHhccccCCCCEEEEeCCC
Confidence 235777888765 788999888654
No 107
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=57.35 E-value=56 Score=25.09 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=41.6
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.+..-|+||.++...+.+. ++.. =++.+|-+... .+.+++.+.+.++++.+.+. +++.+++.+
T Consensus 9 pIgvfDSGvGGLtv~~~i~~~----lp~~----~~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~--g~~~iVIAC 77 (268)
T 3out_A 9 PIGVFDSGIGGLTIVKNLMSI----LPNE----DIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQ--EVKAIIIAC 77 (268)
T ss_dssp CEEEEESSSTTHHHHHHHHHH----CTTC----CEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHT--TCSEEEECC
T ss_pred cEEEEECCCChHHHHHHHHHH----CCCC----cEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 456778888888876555432 2211 24556766554 56677777777777777766 777776654
No 108
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=57.05 E-value=24 Score=25.43 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=46.8
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|.-.... .+...+ .++.+.. . .+....+..+. ..+||+|++.+..-+..
T Consensus 3 ~~ilivdd~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~a~~~~~-----~~~~dlvllD~~l~~~~--------- 60 (225)
T 1kgs_A 3 VRVLVVEDERDLAD----LITEALKKEMFTVDV-C---YDGEEGMYMAL-----NEPFDVVILDIMLPVHD--------- 60 (225)
T ss_dssp CEEEEECSSHHHHH----HHHHHHHHTTCEEEE-E---SSHHHHHHHHH-----HSCCSEEEEESCCSSSC---------
T ss_pred ceEEEEeCCHHHHH----HHHHHHHHCCCEEEE-E---CCHHHHHHHHh-----cCCCCEEEEeCCCCCCC---------
Confidence 46888888765331 122222 2333331 1 22334444443 24799999977655432
Q ss_pred HHHHHHHHHhhCCCCeEEEEecc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|.++|++++..
T Consensus 61 g~~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 61 GWEILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp HHHHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHHhcCCCCCEEEEeCC
Confidence 13578888888899999999864
No 109
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=56.63 E-value=24 Score=22.30 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.+||+|++.+..-+.. -.++++.+++..|..+|++++..
T Consensus 43 ~~~dlil~D~~l~~~~---------g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDED---------GLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp SCCSEEEECSCCSSSC---------HHHHHHHHHHTTCCSCEEEEESC
T ss_pred cCCCEEEEecCCCCCC---------HHHHHHHHHhcCCCCCEEEEecC
Confidence 4689999965543321 13467778887889999998863
No 110
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=56.59 E-value=31 Score=26.53 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=39.2
Q ss_pred cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHh-hCCCCeEEEEec
Q psy1995 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQT-KQPQADVVVLEL 135 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~-~~p~~~ii~~~~ 135 (211)
+.+...|+||.+....+.+. -|+..++.+|-++.. .+.+++.+.+.++++.+.+ . +++.+++.+
T Consensus 6 IgvfDSGvGGltv~~~i~~~--------lP~~~~iy~~D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~--g~d~iViAC 74 (272)
T 1zuw_A 6 IGVIDSGVGGLTVAKEIMRQ--------LPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENH--HIKMLVIAC 74 (272)
T ss_dssp EEEEESSSTTHHHHHHHHHH--------STTCCEEEEECGGGCCCSSSCHHHHHHHHHHHHHHHHHHS--CCSEEEECC
T ss_pred EEEEeCCcchHHHHHHHHHh--------CCCCcEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhc--CCCEEEEeC
Confidence 45667778876654433322 233445567766543 5566777777777777776 5 677777654
No 111
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=55.49 E-value=37 Score=21.49 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=43.3
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-.... .+...+. ++.+.. . .+....+..+. ..+||+|++.+..-+..
T Consensus 3 ~~~ilivdd~~~~~~----~l~~~l~~~~~~v~~-~---~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~-------- 61 (123)
T 1xhf_A 3 TPHILIVEDELVTRN----TLKSIFEAEGYDVFE-A---TDGAEMHQILS-----EYDINLVIMDINLPGKN-------- 61 (123)
T ss_dssp CCEEEEECSCHHHHH----HHHHHHHTTTCEEEE-E---SSHHHHHHHHH-----HSCCSEEEECSSCSSSC--------
T ss_pred CceEEEEeCCHHHHH----HHHHHHhhCCcEEEE-e---CCHHHHHHHHh-----cCCCCEEEEcCCCCCCC--------
Confidence 457999998865431 1222222 233221 1 22234444443 24689999966544321
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++. |..++++++..
T Consensus 62 -g~~~~~~l~~~-~~~~ii~~s~~ 83 (123)
T 1xhf_A 62 -GLLLARELREQ-ANVALMFLTGR 83 (123)
T ss_dssp -HHHHHHHHHHH-CCCEEEEEESC
T ss_pred -HHHHHHHHHhC-CCCcEEEEECC
Confidence 12456677766 78888888763
No 112
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=54.14 E-value=23 Score=28.04 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=32.3
Q ss_pred CCCcEEEEEeccCCCC-C-CHHHH---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-D-SAENI---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~-~~~~~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|.+--. . ..+.+ ..-+.++.+.+.+..|++.+++++.
T Consensus 68 ~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 68 EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp TTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 5789999999987432 2 22333 3457888889999999998888875
No 113
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=54.12 E-value=33 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+..+ -..-+.++++.+.+..|++.+++++.
T Consensus 72 ~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 72 ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4679999999987433 33322 23567888999999999998888864
No 114
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=53.94 E-value=24 Score=26.20 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=50.8
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
....+|+++-|.-.... .+...+ .++.+.. .. +....+..+. ..+||+||+.+...|..
T Consensus 21 ~~~~~ILivdd~~~~~~----~l~~~L~~~g~~v~~-~~---~~~~al~~~~-----~~~~dlvllD~~lp~~~------ 81 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVE----LLSVSLKFQGFEVYT-AT---NGAQALDRAR-----ETRPDAVILDVXMPGMD------ 81 (250)
T ss_dssp CSSCEEEEECSCHHHHH----HHHHHHHHTTCEEEE-ES---SHHHHHHHHH-----HHCCSEEEEESCCSSSC------
T ss_pred CCCceEEEEECCHHHHH----HHHHHHHHCCCEEEE-EC---CHHHHHHHHH-----hCCCCEEEEeCCCCCCC------
Confidence 35678999999865331 122222 1334432 12 2334444443 24699999987665542
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|.++|++++...
T Consensus 82 ---g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 82 ---GFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp ---HHHHHHHHHHTTCCCCEEEEECST
T ss_pred ---HHHHHHHHHhcCCCCCEEEEECCC
Confidence 245788888888999999998743
No 115
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=53.56 E-value=26 Score=23.02 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=44.9
Q ss_pred CcEEEEccchhcccCcchhHHhhcCC-cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFEP-LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGI 114 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~~-~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~ 114 (211)
.+|+++.|+-.... .....+.. +.+. .. .+....+..+. ..+||+|++.+..-+.. -
T Consensus 2 ~~Ilivdd~~~~~~----~l~~~l~~~~~v~-~~---~~~~~a~~~~~-----~~~~dlvl~D~~lp~~~---------g 59 (139)
T 2jk1_A 2 PAILLVDDEPHSLA----AMKLALEDDFDVL-TA---QGAEAAIAILE-----EEWVQVIICDQRMPGRT---------G 59 (139)
T ss_dssp CEEEEECSSHHHHH----HHHHHHTTTSCEE-EE---SSHHHHHHHHH-----HSCEEEEEEESCCSSSC---------H
T ss_pred CeEEEEcCCHHHHH----HHHHHhhcCceEE-Ec---CCHHHHHHHHh-----cCCCCEEEEeCCCCCCc---------H
Confidence 46888888765331 12222221 2332 11 12234444443 24689999977554432 1
Q ss_pred HHHHHHHHhhCCCCeEEEEecc
Q psy1995 115 LELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.++++.+++..|..++++++..
T Consensus 60 ~~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 60 VDFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp HHHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHHHhCCCCcEEEEeCC
Confidence 3567778888889999988764
No 116
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=53.11 E-value=44 Score=23.71 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=45.0
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
.+.+|+++.|.-.... .+...+ .++.+.....+| ...+..+. ...||+||+.+..-+..
T Consensus 12 m~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~~~~~~---~~al~~~~-----~~~~dlvi~D~~~p~~~------- 72 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRM----DLAEMLREEGYEIVGEAGDG---QEAVELAE-----LHKPDLVIMDVKMPRRD------- 72 (205)
T ss_dssp CCCEEEEECSSHHHHH----HHHHHHHHTTCEEEEEESSH---HHHHHHHH-----HHCCSEEEEESSCSSSC-------
T ss_pred CCccEEEEECCHHHHH----HHHHHHHHCCCEEEEEeCCH---HHHHHHHh-----hcCCCEEEEeCCCCCCC-------
Confidence 4468999999865431 122222 233333222223 33333333 24689999977655432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..|. +||+++..
T Consensus 73 --g~~~~~~l~~~~~~-pii~lt~~ 94 (205)
T 1s8n_A 73 --GIDAASEIASKRIA-PIVVLTAF 94 (205)
T ss_dssp --HHHHHHHHHHTTCS-CEEEEEEG
T ss_pred --hHHHHHHHHhcCCC-CEEEEecC
Confidence 13467777776664 78887753
No 117
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=52.58 E-value=11 Score=26.60 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=43.0
Q ss_pred CcEEEEccchhcccCc---chhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 36 PELVFIGDSLISFLTQ---TQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~---~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
..|+.+||.+..|-.. +....+.+. +..+...++-++....+.+.+.. .+...+.|+||...|+-
T Consensus 4 v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~-~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 4 VGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRL-WADREGLDLILTNGGTG 73 (164)
T ss_dssp EEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHH-HHHTSCCSEEEEESCCS
T ss_pred EEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHH-HHhcCCCCEEEEcCCCC
Confidence 4588999999877421 112233333 45677788888888888877765 33223689999987764
No 118
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=52.46 E-value=22 Score=26.54 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|.-.... .+...+. ++.+. .. .+....+..+. ..+||+||+.+..-|.
T Consensus 36 ~~~~ILivdd~~~~~~----~l~~~L~~~g~~v~-~~---~~~~~al~~~~-----~~~~DlvllD~~lp~~-------- 94 (249)
T 3q9s_A 36 NEQRILVIEDDHDIAN----VLRMDLTDAGYVVD-HA---DSAMNGLIKAR-----EDHPDLILLDLGLPDF-------- 94 (249)
T ss_dssp -CCEEEEECSCHHHHH----HHHHHHHTTTCEEE-EE---SSHHHHHHHHH-----HSCCSEEEEECCSCHH--------
T ss_pred CCCEEEEEECCHHHHH----HHHHHHHHCCCEEE-Ee---CCHHHHHHHHh-----cCCCCEEEEcCCCCCC--------
Confidence 3578999999865331 1222322 22221 11 22334444443 2479999997644331
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
+-.++++.+++ .|..+|++++...
T Consensus 95 -~G~~l~~~lr~-~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 95 -DGGDVVQRLRK-NSALPIIVLTARD 118 (249)
T ss_dssp -HHHHHHHHHHT-TCCCCEEEEESCC
T ss_pred -CHHHHHHHHHc-CCCCCEEEEECCC
Confidence 12356777777 6899999998743
No 119
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=52.45 E-value=33 Score=27.14 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=35.6
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhhC-CCCeEEEEeccCC
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTKQ-PQADVVVLELLPR 138 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~~-p~~~ii~~~~~p~ 138 (211)
...|+||+..|.+.-. .+..++ ...+.++++.+++.. |++.+++++. |+
T Consensus 82 ~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN-Pv 136 (329)
T 1b8p_A 82 KDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN-PA 136 (329)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS-SH
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC-ch
Confidence 4679999999987543 444433 245788899999986 9999998884 44
No 120
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=52.09 E-value=15 Score=29.91 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=33.8
Q ss_pred CCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 86 LDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 86 ~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+...+||+||+..|.--.. .+.+.|....+.+.+..++.+...-++++..
T Consensus 253 l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleG 310 (369)
T 1zz1_A 253 LRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEG 310 (369)
T ss_dssp HHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECC
T ss_pred HHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3468999999999976322 6788888777777776666443444444443
No 121
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=51.98 E-value=38 Score=24.51 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|.-.... .+...+ .++.+. .. .+....+..+. ..+||+|++.+..-+..
T Consensus 6 ~~~~ilivdd~~~~~~----~l~~~L~~~g~~v~-~~---~~~~~a~~~~~-----~~~~dlvllD~~l~~~~------- 65 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLA----SLERGLRLSGFEVA-TA---VDGAEALRSAT-----ENRPDAIVLDINMPVLD------- 65 (233)
T ss_dssp -CCEEEEECSCHHHHH----HHHHHHHHTTCEEE-EE---SSHHHHHHHHH-----HSCCSEEEEESSCSSSC-------
T ss_pred CCCeEEEEeCCHHHHH----HHHHHHHhCCCEEE-EE---CCHHHHHHHHH-----hCCCCEEEEeCCCCCCC-------
Confidence 3468999999865431 122222 233333 11 22334444443 24799999987654432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|.++|++++...
T Consensus 66 --g~~~~~~l~~~~~~~~ii~lt~~~ 89 (233)
T 1ys7_A 66 --GVSVVTALRAMDNDVPVCVLSARS 89 (233)
T ss_dssp --HHHHHHHHHHTTCCCCEEEEECCC
T ss_pred --HHHHHHHHHhcCCCCCEEEEEcCC
Confidence 135788888888999999998654
No 122
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=51.78 E-value=26 Score=27.72 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCC-----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .....-..-+.++++.+.+..|++.|++.+.
T Consensus 71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4789999999876322 1122344567888889999999999888754
No 123
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=51.70 E-value=33 Score=24.71 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
..||+|++.+..-+.. -.++++.+++..|.++|++++...
T Consensus 42 ~~~dlvllD~~lp~~~---------g~~~~~~lr~~~~~~~ii~lt~~~ 81 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYS---------GYEICRMIKETRPETWVILLTLLS 81 (220)
T ss_dssp SCCSEEEEESBCSSSB---------HHHHHHHHHHHCTTSEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCC---------HHHHHHHHHhcCCCCcEEEEEcCC
Confidence 5799999987655432 135788888888999999998754
No 124
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=51.40 E-value=38 Score=26.72 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=34.3
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|..--. .+-.+ -..-+.++.+.+.+..|++.+++++.
T Consensus 68 ~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 68 EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp TTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4689999999987433 33333 23457788888889999998888764
No 125
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=51.36 E-value=69 Score=24.14 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=38.5
Q ss_pred ceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 63 HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 63 ~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+...|+||.+...-+.+. -|+..++.+|-++.. .+.+++.+.+.+.++.+.+. +++.+++.+
T Consensus 4 gvfDSG~Ggltv~~~l~~~--------~P~~~~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~--g~d~iviaC 70 (254)
T 1b73_A 4 GIFDSGVGGLTVLKAIRNR--------YRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDK--GVDIIVVAC 70 (254)
T ss_dssp EEEESSSGGGTHHHHHHHH--------STTCEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTT--TCSEEEECC
T ss_pred EEEECCccHHHHHHHHHHh--------CCCCcEEEeecCCCCCCCcCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 3556677776644433322 344556677766544 45666777777777777665 677777665
No 126
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=51.08 E-value=11 Score=26.85 Aligned_cols=77 Identities=23% Similarity=0.206 Sum_probs=47.4
Q ss_pred hcCCCcEEEEccchhccc-Ccc--hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCC--C
Q psy1995 32 KESEPELVFIGDSLISFL-TQT--QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNT--E 104 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~-~~~--~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~--~ 104 (211)
+..+..|+.+||.+ |- .+. ....+.+ .+..+...++-++....+.+.+.. .+...+.|+||...|+-=. .
T Consensus 12 ~~~rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~-~~~~~~~DlVittGG~g~g~~D 88 (169)
T 1y5e_A 12 KEVRCKIVTISDTR--TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLA-GYHKEDVDVVLTNGGTGITKRD 88 (169)
T ss_dssp CCCEEEEEEECSSC--CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHH-HHTCTTCSEEEEECCCSSSTTC
T ss_pred cCCEEEEEEEcCcc--CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHH-HHhcCCCCEEEEcCCCCCCCCC
Confidence 34556789999998 32 111 1112222 256778888889988888887765 3322478999998876422 2
Q ss_pred CCHHHHH
Q psy1995 105 DSAENIA 111 (211)
Q Consensus 105 ~~~~~~~ 111 (211)
.+++.+.
T Consensus 89 ~t~ea~~ 95 (169)
T 1y5e_A 89 VTIEAVS 95 (169)
T ss_dssp CHHHHHH
T ss_pred CcHHHHH
Confidence 4444443
No 127
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=50.97 E-value=49 Score=21.58 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-.... .+...+. ++.+. .. .+....+..+. ..+||+|++.+..-+..
T Consensus 4 ~~~Ilivdd~~~~~~----~l~~~L~~~g~~v~-~~---~~~~~al~~~~-----~~~~dlvllD~~l~~~~-------- 62 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQ----KLKGFLEEKGISID-LA---YNCEEAIGKIF-----SNKYDLIFLEIILSDGD-------- 62 (136)
T ss_dssp CCEEEEECSCHHHHH----HHHHHHHTTTCEEE-EE---SSHHHHHHHHH-----HCCCSEEEEESEETTEE--------
T ss_pred CCeEEEEcCCHHHHH----HHHHHHHHCCCEEE-EE---CCHHHHHHHHH-----hcCCCEEEEeCCCCCCC--------
Confidence 468999999865331 1222222 23332 11 22334444443 24689999976554421
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++.. ..+|++++..
T Consensus 63 -g~~l~~~l~~~~-~~~ii~ls~~ 84 (136)
T 2qzj_A 63 -GWTLCKKIRNVT-TCPIVYMTYI 84 (136)
T ss_dssp -HHHHHHHHHTTC-CCCEEEEESC
T ss_pred -HHHHHHHHccCC-CCCEEEEEcC
Confidence 134677777664 7888888764
No 128
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=50.86 E-value=28 Score=27.40 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccCCCC-CC-H---HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS-A---ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~-~---~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..-.. .+ . ..-...+.++++.+++..|++.+++.+.
T Consensus 67 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 4679999999876432 22 1 2234567888888899999998888755
No 129
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=50.21 E-value=38 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=34.1
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..... .+..++ ...+.++++.+++..|++.|++.+.
T Consensus 69 ~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 69 AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4789999999976543 333332 3567888899999999998887654
No 130
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=50.17 E-value=40 Score=26.62 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCCcEEEEEeccCCCC-CCHHH-H---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN-I---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~-~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+-.+ + ...+.++.+.+.+..|++.+++++.
T Consensus 77 ~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 77 ADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 5689999999987433 33333 2 3457888889999999998888875
No 131
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=49.59 E-value=23 Score=28.14 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=33.4
Q ss_pred CCCcEEEEEeccCCCC-CC-HH---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS-AE---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~-~~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+ .+ .-..-+.++++.+.+..|++.+++++.
T Consensus 74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 4679999999976432 22 12 233567888999999999998888875
No 132
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=49.53 E-value=17 Score=26.20 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=48.5
Q ss_pred cCCCcEEEEccchh----c-cc-Ccc--hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC-
Q psy1995 33 ESEPELVFIGDSLI----S-FL-TQT--QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN- 101 (211)
Q Consensus 33 ~~~~~il~iGDS~t----~-g~-~~~--~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N- 101 (211)
..+.-|+.+||+++ . |- .+. ......+ .+..+...++-.+....+.+.+.+ .+.....|+||+..|+-
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~-a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTD-ALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHH-HHTCTTCCEEEEESCCSS
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH-HHhcCCCCEEEECCCCCC
Confidence 44567999999987 4 42 111 1112222 256778888888888888887765 34323589999987754
Q ss_pred -CCCCCHHHHHH
Q psy1995 102 -NTEDSAENIAD 112 (211)
Q Consensus 102 -D~~~~~~~~~~ 112 (211)
+...+++.+.+
T Consensus 94 g~~D~t~eal~~ 105 (178)
T 2pjk_A 94 SPTDITVETIRK 105 (178)
T ss_dssp STTCCHHHHHGG
T ss_pred CCCcchHHHHHH
Confidence 22245554443
No 133
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=49.07 E-value=39 Score=26.97 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC---CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE---PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~---~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
..+|+++.|+-... ..+.+.+. ++.++....++ ...+..+. ..+||+|++.+..-+..
T Consensus 3 ~~rVLIVDD~~~~r----~~L~~~L~~~~g~~vv~~a~~~---~eAl~~l~-----~~~pDlVllDi~mp~~d------- 63 (349)
T 1a2o_A 3 KIRVLSVDDSALMR----QIMTEIINSHSDMEMVATAPDP---LVARDLIK-----KFNPDVLTLDVEMPRMD------- 63 (349)
T ss_dssp CEEEEEECSCHHHH----HHHHHHHHTSTTEEEEEEESSH---HHHHHHHH-----HHCCSEEEEECCCSSSC-------
T ss_pred CCEEEEEECCHHHH----HHHHHHHhcCCCcEEEEEeCCH---HHHHHHHh-----ccCCCEEEEECCCCCCC-------
Confidence 35799999986543 12233332 33333332233 33334333 24689999977554432
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++..| ++|++++..
T Consensus 64 --Glell~~l~~~~p-~pVIvlS~~ 85 (349)
T 1a2o_A 64 --GLDFLEKLMRLRP-MPVVMVSSL 85 (349)
T ss_dssp --HHHHHHHHHHSSC-CCEEEEECC
T ss_pred --HHHHHHHHHhcCC-CcEEEEECC
Confidence 1346777777777 888888753
No 134
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=48.97 E-value=12 Score=26.60 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=47.0
Q ss_pred CCcEEEEccchhcccCcc---hhHHhhcC-------CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC--C
Q psy1995 35 EPELVFIGDSLISFLTQT---QIWHNLFE-------PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN--N 102 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~---~~~~~~~~-------~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N--D 102 (211)
+.-|+.+||.+..|-... ....+.+. +..+...++-++....+.+.++. .++..+.|+||...|+- +
T Consensus 7 rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~-~~~~~~~DlVittGG~g~g~ 85 (167)
T 1uuy_A 7 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQK-WSDVDEMDLILTLGGTGFTP 85 (167)
T ss_dssp EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHH-HHHTSCCSEEEEESCCSSST
T ss_pred EEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHH-HHhcCCCCEEEECCCCCCCC
Confidence 345889999987664211 11122221 56677888888888888887765 33224789999987764 2
Q ss_pred CCCCHHHHH
Q psy1995 103 TEDSAENIA 111 (211)
Q Consensus 103 ~~~~~~~~~ 111 (211)
...+++.+.
T Consensus 86 ~D~t~~a~~ 94 (167)
T 1uuy_A 86 RDVTPEATK 94 (167)
T ss_dssp TCCHHHHHH
T ss_pred CCchHHHHH
Confidence 224444443
No 135
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=48.69 E-value=40 Score=26.10 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=45.7
Q ss_pred CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 61 ~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.+..-|+||.++...+.+. + |..=++.+|-|-.. .+.+++.+.+.++++.+.+. +++.+++.+
T Consensus 26 ~IgvfDSGvGGLtv~~~i~~~----l----P~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~--g~d~IVIAC 94 (274)
T 3uhf_A 26 KIGVFDSGVGGLSVLKSLYEA----R----LFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQF--QIDMLIIAC 94 (274)
T ss_dssp EEEEEESSSTTHHHHHHHHHT----T----CCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTS--CCSEEEECC
T ss_pred eEEEEECCCChHHHHHHHHHH----C----CCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 457889999998876655432 2 22234667776654 67788888888888888776 888887765
No 136
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=48.64 E-value=49 Score=20.94 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=42.9
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .....+ .++.+... .+....+..+. ..+||+|++.+...+..
T Consensus 3 ~~ilivdd~~~~~~----~l~~~L~~~g~~v~~~----~~~~~al~~~~-----~~~~dlii~D~~~p~~~--------- 60 (120)
T 3f6p_A 3 KKILVVDDEKPIAD----ILEFNLRKEGYEVHCA----HDGNEAVEMVE-----ELQPDLILLDIMLPNKD--------- 60 (120)
T ss_dssp CEEEEECSCHHHHH----HHHHHHHHTTCEEEEE----SSHHHHHHHHH-----TTCCSEEEEETTSTTTH---------
T ss_pred CeEEEEECCHHHHH----HHHHHHHhCCEEEEEe----CCHHHHHHHHh-----hCCCCEEEEeCCCCCCC---------
Confidence 47899998754321 122222 13333321 23344455443 35799999976554431
Q ss_pred HHHHHHHHHhhCCCCeEEEEec
Q psy1995 114 ILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
-.++++.+++.. ..+|++++.
T Consensus 61 g~~~~~~lr~~~-~~~ii~~t~ 81 (120)
T 3f6p_A 61 GVEVCREVRKKY-DMPIIMLTA 81 (120)
T ss_dssp HHHHHHHHHTTC-CSCEEEEEE
T ss_pred HHHHHHHHHhcC-CCCEEEEEC
Confidence 134667777654 678888875
No 137
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=47.66 E-value=30 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhC--CCCeEEEEec
Q psy1995 88 SIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQ--PQADVVVLEL 135 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~~~ 135 (211)
..+||+|++.+..-+.. -.++++.+++.. |..+|++++.
T Consensus 44 ~~~~dlvi~D~~l~~~~---------g~~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 44 EPWPDLILLAWMLPGGS---------GIQFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp SSCCSEEEEESEETTEE---------HHHHHHHHHTSTTTTTSCEEEEEE
T ss_pred ccCCCEEEEecCCCCCC---------HHHHHHHHHhCcccCCCCEEEEeC
Confidence 45799999976544321 134677888765 7889999876
No 138
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=47.03 E-value=85 Score=24.06 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=47.4
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCC-CCCCHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN-TEDSAEN 109 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND-~~~~~~~ 109 (211)
....+|+++-|+-+... .....+. ++.+.-...+| ...+..+. ..+||+|++-+-.-| +. .
T Consensus 158 ~l~~rILvVdD~~~~~~----~l~~~L~~~g~~v~~~a~~g---~eAl~~~~-----~~~~dlvl~D~~MPd~md-G--- 221 (286)
T 3n0r_A 158 ELATEVLIIEDEPVIAA----DIEALVRELGHDVTDIAATR---GEALEAVT-----RRTPGLVLADIQLADGSS-G--- 221 (286)
T ss_dssp SCCCEEEEECCSHHHHH----HHHHHHHHTTCEEEEEESSH---HHHHHHHH-----HCCCSEEEEESCCTTSCC-T---
T ss_pred cCCCcEEEEcCCHHHHH----HHHHHhhccCceEEEEeCCH---HHHHHHHH-----hCCCCEEEEcCCCCCCCC-H---
Confidence 34568999999876432 1222222 34444233344 33444443 246999999764432 11 0
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-++++.+++.. +.+||++|..+
T Consensus 222 -----~e~~~~ir~~~-~~piI~lT~~~ 243 (286)
T 3n0r_A 222 -----IDAVKDILGRM-DVPVIFITAFP 243 (286)
T ss_dssp -----TTTTHHHHHHT-TCCEEEEESCG
T ss_pred -----HHHHHHHHhcC-CCCEEEEeCCH
Confidence 13566777765 89999999754
No 139
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=46.33 E-value=35 Score=27.26 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCCCcEEEEEeccCCCC-CC-H---HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 88 SIKPKVIVILVGTNNTE-DS-A---ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~-~~-~---~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
-...|+||+..|..--. .+ . ..-.+-+.++++.+.+..|++.+++++.
T Consensus 87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 35679999999987432 22 2 2334557888899999999998888875
No 140
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=46.16 E-value=53 Score=20.62 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=43.4
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .+...+ .++.+.. .. +.......+. ..+||+|++.+..-+..
T Consensus 3 ~~ilivdd~~~~~~----~l~~~L~~~~~~v~~-~~---~~~~~~~~~~-----~~~~dlvi~d~~l~~~~--------- 60 (122)
T 1zgz_A 3 HHIVIVEDEPVTQA----RLQSYFTQEGYTVSV-TA---SGAGLREIMQ-----NQSVDLILLDINLPDEN--------- 60 (122)
T ss_dssp CEEEEECSSHHHHH----HHHHHHHHTTCEEEE-ES---SHHHHHHHHH-----HSCCSEEEEESCCSSSC---------
T ss_pred cEEEEEECCHHHHH----HHHHHHHHCCCeEEE-ec---CHHHHHHHHh-----cCCCCEEEEeCCCCCCC---------
Confidence 47899988865431 122222 1333321 11 2233444333 24689999977654432
Q ss_pred HHHHHHHHHhhCCCCeEEEEecc
Q psy1995 114 ILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++ .|..+|++++..
T Consensus 61 g~~~~~~l~~-~~~~~ii~~s~~ 82 (122)
T 1zgz_A 61 GLMLTRALRE-RSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHHT-TCCCEEEEEESS
T ss_pred hHHHHHHHHh-cCCCCEEEEECC
Confidence 1346777777 678899988764
No 141
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=46.01 E-value=50 Score=25.88 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccCCCC-CC-HH---HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS-AE---NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~-~~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+ .+ .-..-+.++++.+.+..|++.+++.+.
T Consensus 66 ~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 66 RGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp TTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4789999998876432 22 22 233457888888888899999888765
No 142
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=45.89 E-value=16 Score=26.43 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHhhcCCCCCCCCcEEEE-EeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 79 WRVQDGILDSIKPKVIVI-LVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 79 ~~~~~~~~~~~~pd~Vvi-~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
.++.. ..+.++||+||- .-|+++.....+...+.+..+...++..+|+.+|-|....-
T Consensus 61 ~~Fk~-Lv~n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~~V~nqwpGvkLRVtegwd 119 (187)
T 3k7i_B 61 ERFKE-LTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTKGWD 119 (187)
T ss_dssp GGGGG-CEECCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred ccccc-ccccCCCceEecCccCCCcchhhCHHHHHHHHHHHHHHHHhcCCceEEEeeccc
Confidence 44544 334789999985 55655545556788899999999999999999999988643
No 143
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=45.62 E-value=52 Score=21.04 Aligned_cols=80 Identities=11% Similarity=0.299 Sum_probs=43.6
Q ss_pred CcEEEEccchhcccCcchhHHhhcC---CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE---PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~---~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
.+|+++.|+-... ......+. ++.++....+| ...+..+. ..+||+|++.+..-+..
T Consensus 3 ~~ilivdd~~~~~----~~l~~~l~~~~~~~~~~~~~~~---~~a~~~~~-----~~~~dlvllD~~l~~~~-------- 62 (130)
T 1dz3_A 3 IKVCIADDNRELV----SLLDEYISSQPDMEVIGTAYNG---QDCLQMLE-----EKRPDILLLDIIMPHLD-------- 62 (130)
T ss_dssp EEEEEECSCHHHH----HHHHHHHHTSTTEEEEEEESSH---HHHHHHHH-----HHCCSEEEEESCCSSSC--------
T ss_pred eEEEEEcCCHHHH----HHHHHHHHhCCCceEEEEeCCH---HHHHHHHh-----cCCCCEEEEecCCCCCC--------
Confidence 4688998886432 11233332 22332222222 33444333 24689999977654432
Q ss_pred HHHHHHHHHHhh-CCCCeEEEEecc
Q psy1995 113 GILELIRLVQTK-QPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~-~p~~~ii~~~~~ 136 (211)
-.++++.+++. .|..+|++++..
T Consensus 63 -g~~~~~~l~~~~~~~~~ii~ls~~ 86 (130)
T 1dz3_A 63 -GLAVLERIRAGFEHQPNVIMLTAF 86 (130)
T ss_dssp -HHHHHHHHHHHCSSCCEEEEEEET
T ss_pred -HHHHHHHHHhcCCCCCcEEEEecC
Confidence 13466777765 577888888763
No 144
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=45.59 E-value=24 Score=23.62 Aligned_cols=84 Identities=10% Similarity=0.049 Sum_probs=45.7
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+.+|+++=|.-.........+.+. ++.+....-+| ...++.++ ..+||+|++-+..-+.. .
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~--G~~v~~~a~~g---~eAl~~~~-----~~~~DlvllDi~mP~~~-G------ 68 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCEL--GHEVAATASRM---QEALDIAR-----KGQFDIAIIDVNLDGEP-S------ 68 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHH--CCCCCBCSCCH---HHHHHHHH-----HCCSSEEEECSSSSSCC-S------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHC--CCEEEEEECCH---HHHHHHHH-----hCCCCEEEEecCCCCCC-H------
Confidence 45679999999876542221122222 33333222333 33444443 35799999955433322 1
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 113 GILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-++++.+++. +.+||++|...
T Consensus 69 --~el~~~lr~~--~ipvI~lTa~~ 89 (123)
T 2lpm_A 69 --YPVADILAER--NVPFIFATGYG 89 (123)
T ss_dssp --HHHHHHHHHT--CCSSCCBCTTC
T ss_pred --HHHHHHHHcC--CCCEEEEecCc
Confidence 1355666665 78888888643
No 145
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=45.07 E-value=36 Score=26.97 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+-.+ -..-+.++++.+.+..|++.|++.+.
T Consensus 75 ~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3679999999886432 22222 23567788888889999999888754
No 146
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=44.60 E-value=45 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=34.1
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+-.+ -..-+.++++.+++..|++.|++.+.
T Consensus 66 ~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 66 EGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp TTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4789999999886432 33222 24467888888999999999888754
No 147
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=44.10 E-value=40 Score=22.43 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=39.0
Q ss_pred CCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-+++-|+|.....|.. .+++.|...++..|+..|+. +.+-|++.++
T Consensus 30 DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~--gk~~IWlklp 77 (113)
T 3fxt_A 30 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSE--GRTAVWLHIP 77 (113)
T ss_dssp CTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHT--TCCEEEEEEE
T ss_pred cCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHc--CCeeEEEEcC
Confidence 5678899998877654 57899999999999999998 8888999873
No 148
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=44.10 E-value=85 Score=22.41 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=41.4
Q ss_pred cEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGI 114 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~ 114 (211)
+|+++.|.-... ..+...+. ++.+. .. .+....+..+. ...||+|+ +-|.+.
T Consensus 2 ~ilivdd~~~~~----~~l~~~L~~~g~~v~-~~---~~~~~al~~l~-----~~~~dlvi-lp~~~g------------ 55 (223)
T 2hqr_A 2 RVLLIEKNSVLG----GEIEKGLNVKGFMAD-VT---ESLEDGEYLMD-----IRNYDLVM-VSDKNA------------ 55 (223)
T ss_dssp CEEEECSCHHHH----HHHHHHHGGGTCCEE-EE---SSHHHHHHHHT-----TSCCSEEE-ECCTTH------------
T ss_pred EEEEEcCCHHHH----HHHHHHHHHCCcEEE-EE---CCHHHHHHHHh-----cCCCCEEE-eCCCCH------------
Confidence 578888875433 11222222 33333 11 22334444443 35799998 333331
Q ss_pred HHHHHHHHhhCC-CCeEEEEeccC
Q psy1995 115 LELIRLVQTKQP-QADVVVLELLP 137 (211)
Q Consensus 115 ~~~i~~i~~~~p-~~~ii~~~~~p 137 (211)
.++++.+++. | .++|++++...
T Consensus 56 ~~~~~~lr~~-~~~~~ii~lt~~~ 78 (223)
T 2hqr_A 56 LSFVSRIKEK-HSSIVVLVSSDNP 78 (223)
T ss_dssp HHHHHHHHHH-CTTSEEEEEESSC
T ss_pred HHHHHHHHhC-CCCCcEEEEECCC
Confidence 3577888887 7 89999998753
No 149
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=43.77 E-value=34 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=34.1
Q ss_pred CCCcEEEEEeccCCCC-CC----HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS----AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~----~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+ .+.-..-+.++.+.+.+..|++.+++++.
T Consensus 86 ~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 86 ANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp TTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4678999999876432 22 22334567788889999999998888875
No 150
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=43.69 E-value=45 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=31.5
Q ss_pred CCCcEEEEEeccCCCC-CCHHH----HHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN----IADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~----~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|+.--. .+-.+ -..-+.++++.+.+..|++.|++.+.
T Consensus 73 ~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 124 (318)
T 1y6j_A 73 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 124 (318)
T ss_dssp TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 4789999999876321 22222 22347888888988899999888765
No 151
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=43.17 E-value=12 Score=26.87 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=46.7
Q ss_pred CCCcEEEEccchhcccCcc---hhHHhhc-----CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCC--
Q psy1995 34 SEPELVFIGDSLISFLTQT---QIWHNLF-----EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNT-- 103 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~---~~~~~~~-----~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~-- 103 (211)
.+.-|+.+||.+..|-... ....+.+ .+..+ .+++-++....+.+.+.. .+...+.|+||...|+-=.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~-~~~~~~~DlVittGG~g~g~~ 83 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIE-LADEKGCSLILTTGGTGPAPR 83 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHH-HHHTSCCSEEEEESCCSSSTT
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHH-HHhcCCCCEEEECCCCCCCCC
Confidence 3456899999988774211 1122211 24556 677888888777777764 3322378999998776422
Q ss_pred CCCHHHHHH
Q psy1995 104 EDSAENIAD 112 (211)
Q Consensus 104 ~~~~~~~~~ 112 (211)
..+++.+.+
T Consensus 84 D~t~ea~~~ 92 (178)
T 2pbq_A 84 DVTPEATEA 92 (178)
T ss_dssp CCHHHHHHH
T ss_pred CchHHHHHH
Confidence 255555544
No 152
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=42.25 E-value=99 Score=23.82 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=43.1
Q ss_pred cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+.+.+.|+||.+...-+.+. -|+..++.+|-++.. .+.+++.+...++++.+.+.. +++.+++.+
T Consensus 24 IgvfDSGvGGltv~~~i~~~--------lP~~~~iy~~D~~~~PyG~~s~~~i~~~~~~i~~~ll~~~-g~d~IviaC 92 (285)
T 2jfn_A 24 VLVFDSGVGGLSVYDEIRHL--------LPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERY-PLALAVVAC 92 (285)
T ss_dssp EEEEESSSTHHHHHHHHHHH--------STTSEEEEEECTTTCCTTTSCHHHHHHHHHHHHHHHHHHS-CCSEEEECC
T ss_pred EEEEeCCccHHHHHHHHHHh--------CCCCCeEEeeccCCCCCccCCHHHHHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 56778888887655444332 255667788877654 567777777777887765422 777787765
No 153
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=41.83 E-value=14 Score=26.23 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=40.9
Q ss_pred CCCcEEEEccchhcccC-cc--hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 34 SEPELVFIGDSLISFLT-QT--QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~-~~--~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
.+.-|+.+||.+..|-. +. ......+ .+..+...++-.+. ..+.+.+.+ .+. .+.|+||...|+-
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~-a~~-~~~DlVittGG~s 77 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRK-AID-DDVDVILTSGGTG 77 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHH-HHH-TTCSEEEEESCCS
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHH-HHh-CCCCEEEECCCCC
Confidence 44579999999987631 11 1122222 24567777777888 877777764 332 4689999987765
No 154
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=41.74 E-value=55 Score=25.54 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
...|+||+.+|+.... .+..++ ...+.++.+.+.+..|++.|++++.+
T Consensus 68 ~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 120 (310)
T 1guz_A 68 ANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120 (310)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4679999999976432 223332 34567888888888899988888653
No 155
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=41.65 E-value=27 Score=25.40 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=48.1
Q ss_pred CCCcEEEEccchhcccCcchhHHhhc---CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLF---EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~---~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
...+|+++-|.-.... .....+ .++.+......+ .+.+.. .+...+||+|++.+..-|. +
T Consensus 6 ~~~~IlivdD~~~~~~----~l~~~L~~~~~~~v~~~~~~~------~~~~~~-~~~~~~~dlvllD~~mp~~----~-- 68 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSR----LLKEALESKLPLALEITPFSE------LWLEEN-KPESRSIQMLVIDYSRISD----D-- 68 (225)
T ss_dssp SSEEEEEESCCSHHHH----HHHHHHHHHSSEEEEEECGGG------HHHHTT-CSGGGGCCEEEEEGGGCCH----H--
T ss_pred CceEEEEEcCcHHHHH----HHHHHHhhCCCceEEEEeCCc------HHHHHH-HhhccCCCEEEEeCCCCCC----C--
Confidence 4568999999865331 122222 233333221111 111211 2234679999997755442 1
Q ss_pred HHHHHHHHHHHHh-hCCCCeEEEEeccCC
Q psy1995 111 ADGILELIRLVQT-KQPQADVVVLELLPR 138 (211)
Q Consensus 111 ~~~~~~~i~~i~~-~~p~~~ii~~~~~p~ 138 (211)
=-++++.+++ .+|.++|++++....
T Consensus 69 ---G~~~~~~lr~~~~~~~~ii~lt~~~~ 94 (225)
T 3klo_A 69 ---VLTDYSSFKHISCPDAKEVIINCPQD 94 (225)
T ss_dssp ---HHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred ---HHHHHHHHHHhhCCCCcEEEEECCcc
Confidence 1457788888 789999999987543
No 156
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=41.62 E-value=35 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccCCCC-CCHH----HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAE----NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..... .+.. .-...+..+++.+++..|++.|++.+.
T Consensus 75 ~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp TTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 3679999999977543 2212 223567888899999889998887664
No 157
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=41.27 E-value=77 Score=24.75 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=36.0
Q ss_pred CCCcEEEEEeccCCC---C----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCC
Q psy1995 89 IKPKVIVILVGTNNT---E----DSAENIADGILELIRLVQTKQPQADVVVLELLPRG 139 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~---~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~ 139 (211)
..||.|+++.|..-- + .+.++..+.++++++.+++.+|+..|+. ..-|..
T Consensus 182 agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc-~gGpIs 238 (286)
T 2p10_A 182 AGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILS-HGGPIA 238 (286)
T ss_dssp HTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEE-ESTTCC
T ss_pred cCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEe-cCCCCC
Confidence 679999999995422 2 5677777889999999999988874443 433443
No 158
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=40.49 E-value=15 Score=26.47 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCcEEEEccchhcccCcc---hhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 35 EPELVFIGDSLISFLTQT---QIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~---~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
+.-|+.+||.+..|-... ....+.+ .+..+...++-++....+.+.+.. .+. +.|+||...|+-
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~-a~~--~~DlVittGG~g 73 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRV-ALE--VSDLVVSSGGLG 73 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHH-HHH--HCSEEEEESCCS
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH-HHh--cCCEEEEcCCCc
Confidence 346899999998874211 1122222 356788888888888888877764 332 489999987765
No 159
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=40.27 E-value=37 Score=26.74 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=34.0
Q ss_pred CCCcEEEEEeccCCCC-CCH----HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA----ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~----~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+- ..-..-+.++.+.+.+..|++.|++.+.
T Consensus 73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 124 (317)
T 3d0o_A 73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124 (317)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 4689999999986432 332 2233567788888888899999888764
No 160
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=40.04 E-value=84 Score=24.27 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1995 107 AENIADGILELIRLVQ 122 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~ 122 (211)
.+++.+.+.+.++.+.
T Consensus 66 ~~~i~~~~~~~~~~L~ 81 (286)
T 2jfq_A 66 GEQVKQYTVEIARKLM 81 (286)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 161
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=40.01 E-value=91 Score=21.58 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=5.2
Q ss_pred CCcEEEEEecc
Q psy1995 90 KPKVIVILVGT 100 (211)
Q Consensus 90 ~pd~Vvi~~G~ 100 (211)
+.++.+|.+..
T Consensus 66 ~~~v~~v~isv 76 (170)
T 4hde_A 66 KLDVQFVSFSV 76 (170)
T ss_dssp TCCCEEEEEES
T ss_pred cccceeEeeec
Confidence 34455555544
No 162
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=39.33 E-value=86 Score=21.30 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=51.1
Q ss_pred CCcEEEEccchhcccCcchhHHhhc-CCcceEEeccCCchhHH--HHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF-EPLHCLAFGIGGDKVEH--CLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~-~~~~~~n~g~~G~~~~~--~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
+.+|.++|-|--.|..+......+. .++.++...-.+..... ....+. .+ ...+|+++|.. +.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~--~l-~~~vDlvvi~v--------p~--- 87 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVL--DI-PDKIEVVDLFV--------KP--- 87 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGG--GC-SSCCSEEEECS--------CH---
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHH--Hc-CCCCCEEEEEe--------CH---
Confidence 6689999998655432211111111 23334333222222111 111122 22 24689999854 22
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEe
Q psy1995 112 DGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQ 173 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD 173 (211)
+...++++.+.+. +++.+++.. ... +..+.+.|++ .++.++-
T Consensus 88 ~~~~~vv~~~~~~--gi~~i~~~~--g~~------------~~~l~~~a~~----~Gi~vvG 129 (144)
T 2d59_A 88 KLTMEYVEQAIKK--GAKVVWFQY--NTY------------NREASKKADE----AGLIIVA 129 (144)
T ss_dssp HHHHHHHHHHHHH--TCSEEEECT--TCC------------CHHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHHHc--CCCEEEECC--Cch------------HHHHHHHHHH----cCCEEEc
Confidence 2234455555556 666666542 111 4556666776 7888773
No 163
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=39.07 E-value=80 Score=20.69 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=42.7
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++.|+-.... .....+. ++.+.. . .+....+..+. ..+||+|++.+...+..
T Consensus 13 ~~~~iLivdd~~~~~~----~l~~~L~~~g~~v~~--~--~~~~~al~~~~-----~~~~dlvl~D~~mp~~~------- 72 (143)
T 3m6m_D 13 RSMRMLVADDHEANRM----VLQRLLEKAGHKVLC--V--NGAEQVLDAMA-----EEDYDAVIVDLHMPGMN------- 72 (143)
T ss_dssp --CEEEEECSSHHHHH----HHHHHHHC--CEEEE--E--SSHHHHHHHHH-----HSCCSEEEEESCCSSSC-------
T ss_pred ccceEEEEeCCHHHHH----HHHHHHHHcCCeEEE--e--CCHHHHHHHHh-----cCCCCEEEEeCCCCCCC-------
Confidence 4578999999865431 1233332 233322 1 12334444443 35799999977655432
Q ss_pred HHHHHHHHHHHh----hCCCCeEEEEec
Q psy1995 112 DGILELIRLVQT----KQPQADVVVLEL 135 (211)
Q Consensus 112 ~~~~~~i~~i~~----~~p~~~ii~~~~ 135 (211)
=.++++.+++ ..+..+|++++.
T Consensus 73 --g~~~~~~lr~~~~~~~~~~pii~~s~ 98 (143)
T 3m6m_D 73 --GLDMLKQLRVMQASGMRYTPVVVLSA 98 (143)
T ss_dssp --HHHHHHHHHHHHHTTCCCCCEEEEES
T ss_pred --HHHHHHHHHhchhccCCCCeEEEEeC
Confidence 1234555543 346678888876
No 164
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=39.00 E-value=30 Score=27.53 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCCcEEEEEeccCCCC-CCH-HHH---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSA-ENI---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~-~~~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..--. .+- +.+ ..-+.++.+.+.+..|++.+++++.
T Consensus 75 ~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp TTCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 5679999999876322 222 222 3457888999999999998888774
No 165
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=38.97 E-value=26 Score=25.56 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=46.1
Q ss_pred CcEEEEccchhcccCcchhHHhhcCC---cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFEP---LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~~---~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
.+|+++.|+-... ..+...+.. +.++....+ ....+..+. ...||+||+.+..-|..
T Consensus 2 ~~ILivdd~~~~~----~~l~~~L~~~~~~~vv~~~~~---~~~al~~l~-----~~~~dlvllD~~lp~~~-------- 61 (225)
T 3c3w_A 2 VKVFLVDDHEVVR----RGLVDLLGADPELDVVGEAGS---VAEAMARVP-----AARPDVAVLDVRLPDGN-------- 61 (225)
T ss_dssp EEEEEECSCHHHH----HHHHHHHHTCTTEEEEEEESS---HHHHHHHHH-----HHCCSEEEECSEETTEE--------
T ss_pred cEEEEEcCCHHHH----HHHHHHHhcCCCcEEEEEECC---HHHHHHHHh-----hcCCCEEEEeCCCCCCC--------
Confidence 3688888886533 122333322 232222222 233444443 24689999965443321
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 113 GILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|..+|++++...
T Consensus 62 -g~~~~~~lr~~~~~~~ii~lt~~~ 85 (225)
T 3c3w_A 62 -GIELCRDLLSRMPDLRCLILTSYT 85 (225)
T ss_dssp -HHHHHHHHHHHCTTCEEEEGGGSS
T ss_pred -HHHHHHHHHHhCCCCcEEEEECCC
Confidence 135778888889999999998754
No 166
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=38.63 E-value=21 Score=25.32 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=46.7
Q ss_pred CCcEEEEccchhcccCc---chhHHhh----cC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC-
Q psy1995 35 EPELVFIGDSLISFLTQ---TQIWHNL----FE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE- 104 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~---~~~~~~~----~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~- 104 (211)
+.-|+.+||.+..|-.. +....+. +. +..+...++-++....+.+.+.+ .+. .+.|+||...|+-=..
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~-a~~-~~~DlVittGG~g~~~~ 84 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIAT-ALK-QGARFIITAGGTGIRAK 84 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHH-HHH-TTCSEEEEESCCSSSTT
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHH-HHh-CCCCEEEECCCCCCCCC
Confidence 45699999999877421 1223444 43 44567778888888888777765 332 2489999988765222
Q ss_pred -CCHHHHH
Q psy1995 105 -DSAENIA 111 (211)
Q Consensus 105 -~~~~~~~ 111 (211)
.+++.+.
T Consensus 85 D~t~ea~~ 92 (167)
T 2g2c_A 85 NQTPEATA 92 (167)
T ss_dssp CCHHHHHH
T ss_pred cChHHHHH
Confidence 4444443
No 167
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=38.49 E-value=76 Score=20.24 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeccCC-CCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeC
Q psy1995 110 IADGILELIRLVQTKQPQADVVVLELLPR-GKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQH 174 (211)
Q Consensus 110 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~-~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~ 174 (211)
....+..+.+.+++. ++.-++++.|-. +....+....+..|-+.|++. . -.+.|+|-
T Consensus 36 ~~~~~~~l~~li~e~--~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~--~----lpV~~~DE 93 (98)
T 1iv0_A 36 LEEDVEALLDFVRRE--GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR--G----VEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHHH--TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT--T----CEEEEECC
T ss_pred cHHHHHHHHHHHHHc--CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC--C----CCEEEECC
Confidence 345567777777777 666677776422 222222233466676667664 4 56777763
No 168
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=38.48 E-value=49 Score=20.79 Aligned_cols=76 Identities=7% Similarity=0.125 Sum_probs=43.8
Q ss_pred CcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC-CCCCCHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN-NTEDSAENIAD 112 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N-D~~~~~~~~~~ 112 (211)
.+|+++.|+-.... .+...+. ++.+.. . .+....+..+.. .+||+|++.+... +..
T Consensus 6 ~~ilivdd~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~a~~~~~~-----~~~dlvi~d~~~~~~~~-------- 64 (127)
T 2gkg_A 6 KKILIVESDTALSA----TLRSALEGRGFTVDE-T---TDGKGSVEQIRR-----DRPDLVVLAVDLSAGQN-------- 64 (127)
T ss_dssp CEEEEECSCHHHHH----HHHHHHHHHTCEEEE-E---CCHHHHHHHHHH-----HCCSEEEEESBCGGGCB--------
T ss_pred CeEEEEeCCHHHHH----HHHHHHHhcCceEEE-e---cCHHHHHHHHHh-----cCCCEEEEeCCCCCCCC--------
Confidence 57999998865331 1222222 233321 1 223444444432 4689999987654 322
Q ss_pred HHHHHHHHHHhh--CCCCeEEEE
Q psy1995 113 GILELIRLVQTK--QPQADVVVL 133 (211)
Q Consensus 113 ~~~~~i~~i~~~--~p~~~ii~~ 133 (211)
-.++++.+++. .|.++|+++
T Consensus 65 -g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 65 -GYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp -HHHHHHHHHHSTTTTTSCEEEE
T ss_pred -HHHHHHHHhcCccccCCCEEEE
Confidence 23577888876 688999888
No 169
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=38.38 E-value=68 Score=25.05 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=33.9
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+|||..|..--- .+-.+. .+-++++.+.+.+..|++.+++++.
T Consensus 68 ~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 68 KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp TTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 4679999999976433 343332 3456788888999999998887775
No 170
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=38.19 E-value=55 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
.+++.+...+.++.+.+. +++.+++.
T Consensus 51 ~~~i~~~~~~~~~~L~~~--g~d~IViA 76 (276)
T 2dwu_A 51 VEEVQSFVFEMVEFLKQF--PLKALVVA 76 (276)
T ss_dssp HHHHHHHHHHHHHHHTTS--CEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHC--CCCEEEEe
Confidence 344444444444444332 34444443
No 171
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=37.67 E-value=73 Score=26.02 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCCeEEEeCCcc
Q psy1995 115 LELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKD 177 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~v~~iD~~~~ 177 (211)
+..+...|+.+|++++.++=- .... ..+-|..++++|++ .++.++|..+.
T Consensus 153 q~~Lle~re~nPG~~i~LVYs--StlL-------n~~a~~ql~~fake----n~IsllDids~ 202 (525)
T 3jsz_A 153 QEALKRRREQYPGCKIRLIYS--SSLL-------NPEANRQMKAFAKK----QNISLIDIDSV 202 (525)
T ss_dssp HHHHHHHHHHCTTCEEEEEEC--STTS-------CHHHHHHHHHHHHH----TTEEEEEGGGC
T ss_pred HHHHHHHHhhCCCCeEEEEee--hhhc-------CHHHHHHHHHHHHh----cCceEeehhhh
Confidence 334555899999987766421 1111 24556778899998 99999998653
No 172
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=35.87 E-value=98 Score=20.74 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=46.9
Q ss_pred cCCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHH
Q psy1995 33 ESEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENI 110 (211)
Q Consensus 33 ~~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 110 (211)
.+..+|+++=|+-+... .....+. ++.++-.+-+|... ++.++ ..+||+|++-+-.=+.. .
T Consensus 10 ~k~~rILiVDD~~~~r~----~l~~~L~~~G~~~v~~a~~g~~a---l~~~~-----~~~~DlillD~~MP~md----G- 72 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRR----IVKNLLRDLGFNNTQEADDGLTA---LPMLK-----KGDFDFVVTDWNMPGMQ----G- 72 (134)
T ss_dssp CTTCCEEEECSCHHHHH----HHHHHHHHTTCCCEEEESSHHHH---HHHHH-----HHCCSEEEEESCCSSSC----H-
T ss_pred CCCCEEEEEeCCHHHHH----HHHHHHHHcCCcEEEEECCHHHH---HHHHH-----hCCCCEEEEcCCCCCCC----H-
Confidence 45679999999876542 1222222 33333334444433 33332 24799999965433321 1
Q ss_pred HHHHHHHHHHHHh--hCCCCeEEEEecc
Q psy1995 111 ADGILELIRLVQT--KQPQADVVVLELL 136 (211)
Q Consensus 111 ~~~~~~~i~~i~~--~~p~~~ii~~~~~ 136 (211)
-++++.+|+ ..++.+||++|..
T Consensus 73 ----~el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 73 ----IDLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp ----HHHHHHHHHSTTTTTCCEEEEESS
T ss_pred ----HHHHHHHHhCCCCCCCeEEEEECC
Confidence 346677775 3467889998863
No 173
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=35.85 E-value=10 Score=30.84 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=28.1
Q ss_pred CCCCCCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 86 LDSIKPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 86 ~~~~~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
+...+||+||+..|..-.. .+.+.+. ++.+.+++. +.+++++.
T Consensus 243 ~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~~~~~--~~p~v~~~ 293 (367)
T 3max_A 243 MEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHA----KCVEVVKTF--NLPLLMLG 293 (367)
T ss_dssp HHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHH----HHHHHHHTT--CCCEEEEC
T ss_pred HHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHH----HHHHHHHhc--CCCEEEEe
Confidence 3468999999999974221 5566554 456666665 56666554
No 174
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=35.61 E-value=42 Score=26.89 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCcEEEEEeccCCCC-CCHHH-H---HHHHHHHHHHHHhhCCCCe-EEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN-I---ADGILELIRLVQTKQPQAD-VVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~-~---~~~~~~~i~~i~~~~p~~~-ii~~~~ 135 (211)
...|+||+..|+.... .+..+ + .+.+.++.+.+.+..|++. |++++.
T Consensus 75 ~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 75 TDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp TTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 4678999998875332 22222 3 3457888999999999996 666654
No 175
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=35.55 E-value=10 Score=30.95 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred CCCCCCcEEEEEeccC----CCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 86 LDSIKPKVIVILVGTN----NTE----DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 86 ~~~~~pd~Vvi~~G~N----D~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
+..++||+||+..|.- |-. .+.+.+. ++.+.+++. +.+++++.
T Consensus 244 ~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~----~~~~~l~~~--~~p~v~v~ 294 (376)
T 4a69_A 244 VDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG----ECVEYVKSF--NIPLLVLG 294 (376)
T ss_dssp HHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHH----HHHHHHHTT--CCCEEEEC
T ss_pred HHHhCCCEEEEeCcccCCCCCcccCeecCHHHHH----HHHHHHHHc--CCCEEEEE
Confidence 3468999999999984 321 5666654 455666665 56666554
No 176
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=35.51 E-value=13 Score=30.52 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=28.0
Q ss_pred CCCCCCCcEEEEEeccC----CCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 85 ILDSIKPKVIVILVGTN----NTE----DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 85 ~~~~~~pd~Vvi~~G~N----D~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
++..++||+||+..|.- |-. .+.+.+. ++.+.+++. +.+++++.
T Consensus 251 ~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~----~~~~~l~~~--~~p~l~~~ 302 (388)
T 3ew8_A 251 VYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQW--QLATLILG 302 (388)
T ss_dssp HHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHH----HHHHHHHTT--CCEEEEEC
T ss_pred HHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHH----HHHHHHHhc--CCCEEEEE
Confidence 33468999999999984 221 4566554 455556654 56666554
No 177
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=35.51 E-value=69 Score=25.10 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccCCCC-CC----HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS----AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~----~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+..|..-.. .+ ...-..-+.++++.+.+..|++.+++.+.
T Consensus 73 ~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4689999998876433 11 22334566788888888899998877654
No 178
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=34.44 E-value=18 Score=29.33 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEeccC----CCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 87 DSIKPKVIVILVGTN----NTE----DSAENIADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 87 ~~~~pd~Vvi~~G~N----D~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
..++||+||+..|.. |-. .+++.|.. +.+.+++. +.+++++
T Consensus 288 ~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~----~~~~l~~~--~~~~v~v 336 (362)
T 3men_A 288 RRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGR----LGHLIGAL--RLPTVIV 336 (362)
T ss_dssp HHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHH----HHHHHHTT--CCCEEEE
T ss_pred HhcCCCEEEEECcccCcCCCCCCCccCCHHHHHH----HHHHHHhh--CCCEEEE
Confidence 368999999999974 321 55666554 56666665 4455544
No 179
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=34.10 E-value=1.3e+02 Score=22.96 Aligned_cols=64 Identities=19% Similarity=0.340 Sum_probs=37.5
Q ss_pred cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..++.-|+||.+.. ..+.+ .++ +..++.+|-+... .+.++....+.+.++.+.+. +++.+++.+
T Consensus 15 IGv~DsG~Ggltv~---~~i~~-~~P----~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~--g~d~iviaC 82 (273)
T 2oho_A 15 IGFLDSGVGGLTVV---CELIR-QLP----HEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQ--NVKMIVFAC 82 (273)
T ss_dssp EEEEESSSTTHHHH---HHHHH-HCT----TCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTT--TCSEEEECC
T ss_pred EEEEeCCCcHHHHH---HHHHH-HCC----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 45666777775433 33322 222 2235666655432 45677777777777777765 777777754
No 180
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=34.09 E-value=90 Score=23.66 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=44.1
Q ss_pred CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 60 EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 60 ~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
.++.++..|.. .....+..... ..+||+|.++...-- + ...+.++++.+++..++++|++-+..+
T Consensus 150 ~G~~Vi~LG~~-vp~e~l~~~~~-----~~~~d~V~lS~l~~~---~----~~~~~~~i~~l~~~~~~~~v~vGG~~~ 214 (258)
T 2i2x_B 150 NGYNVVDLGRD-VPAEEVLAAVQ-----KEKPIMLTGTALMTT---T----MYAFKEVNDMLLENGIKIPFACGGGAV 214 (258)
T ss_dssp TTCEEEEEEEE-CCSHHHHHHHH-----HHCCSEEEEECCCTT---T----TTHHHHHHHHHHTTTCCCCEEEESTTC
T ss_pred CCCEEEECCCC-CCHHHHHHHHH-----HcCCCEEEEEeeccC---C----HHHHHHHHHHHHhcCCCCcEEEECccC
Confidence 47788888875 45566666554 368999999764221 1 224677899999988888877766543
No 181
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=33.35 E-value=79 Score=19.75 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=42.4
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-..... ....+ .++.+... .+....+..+. ..+||+|++.+..-|..
T Consensus 2 ~~ilivdd~~~~~~~----l~~~L~~~~~~v~~~----~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~--------- 59 (124)
T 1mb3_A 2 KKVLIVEDNELNMKL----FHDLLEAQGYETLQT----REGLSALSIAR-----ENKPDLILMDIQLPEIS--------- 59 (124)
T ss_dssp CEEEEECSCHHHHHH----HHHHHHHTTCEEEEE----SCHHHHHHHHH-----HHCCSEEEEESBCSSSB---------
T ss_pred cEEEEEcCCHHHHHH----HHHHHHHcCcEEEEe----CCHHHHHHHHh-----cCCCCEEEEeCCCCCCC---------
Confidence 468888888654321 22222 13333321 12233444433 24689999977654432
Q ss_pred HHHHHHHHHhh--CCCCeEEEEecc
Q psy1995 114 ILELIRLVQTK--QPQADVVVLELL 136 (211)
Q Consensus 114 ~~~~i~~i~~~--~p~~~ii~~~~~ 136 (211)
-.++++.+++. .|..+|++++..
T Consensus 60 g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 60 GLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHHHcCccccCCcEEEEECC
Confidence 13467777764 468889988764
No 182
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=33.13 E-value=1e+02 Score=24.51 Aligned_cols=47 Identities=6% Similarity=-0.037 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccCCCC-CC----HHHHHHHHHHHHHHHHhhCCCC-eEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS----AENIADGILELIRLVQTKQPQA-DVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~----~~~~~~~~~~~i~~i~~~~p~~-~ii~~~~ 135 (211)
...|+||+..|..... .+ .+.-.+.++.+++.+++..|+. .+++++.
T Consensus 78 ~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 78 KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 4779999988866432 11 3344567888999999998876 5777664
No 183
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=33.02 E-value=32 Score=25.16 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCcEEEEccchhcccC-cc--hhHHhhcC--Ccc--eEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--C
Q psy1995 35 EPELVFIGDSLISFLT-QT--QIWHNLFE--PLH--CLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--D 105 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~-~~--~~~~~~~~--~~~--~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~ 105 (211)
+..|+.+||.+..|-. +. ....+.+. +.. +...++-++....+.+.+.. .+...+.|+||...|+-=.. .
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~-a~~~~~~DlVitTGGtg~g~~D~ 83 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE-LVDEMSCHLVLTTGGTGPARRDV 83 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHH-HHHTSCCSEEEEESCCSSSTTCC
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHH-HHhcCCCCEEEECCCCCCCCCcc
Confidence 3458899999987742 11 11222221 233 45677777877777777764 33234789999988875222 5
Q ss_pred CHHHHHH
Q psy1995 106 SAENIAD 112 (211)
Q Consensus 106 ~~~~~~~ 112 (211)
+++.+.+
T Consensus 84 T~ea~~~ 90 (195)
T 1di6_A 84 TPDATLA 90 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 184
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=32.82 E-value=67 Score=19.95 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=25.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.+||+|++.+...+.. -.++++.+++ .|..++++++..
T Consensus 44 ~~~dlvi~D~~l~~~~---------g~~~~~~l~~-~~~~~ii~~s~~ 81 (121)
T 1zh2_A 44 RKPDLIILDLGLPDGD---------GIEFIRDLRQ-WSAVPVIVLSAR 81 (121)
T ss_dssp HCCSEEEEESEETTEE---------HHHHHHHHHT-TCCCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCc---------HHHHHHHHHh-CCCCcEEEEECC
Confidence 4689999976554421 1246667773 578888888763
No 185
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=32.67 E-value=1.7e+02 Score=22.53 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=37.8
Q ss_pred cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 62 ~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+.++.-|+||.+....+.+. + |+..++.+|-+... .+.+++.+.+.+.++.+.+. +++.|++.+
T Consensus 27 IGvfDsG~Ggltv~~~i~~~----~----P~~~~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~--g~d~IVIAC 94 (290)
T 2vvt_A 27 IGLIDSGVGGLTVLKEALKQ----L----PNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKK--RIKMLVIAC 94 (290)
T ss_dssp EEEEESSSTTHHHHHHHHHH----C----TTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTT--TCSEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHH----C----CCccEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 45566777775433333322 2 22245556766543 45677777777777777765 777777765
No 186
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=32.28 E-value=84 Score=22.55 Aligned_cols=79 Identities=6% Similarity=0.044 Sum_probs=44.9
Q ss_pred CCcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-.... .+...+ .++.+.. . .+....+..+. ..+||+|++.+..-+..
T Consensus 4 ~~~ilivdd~~~~~~----~l~~~L~~~g~~v~~-~---~~~~~al~~~~-----~~~~dlvllD~~l~~~~-------- 62 (230)
T 2oqr_A 4 ATSVLIVEDEESLAD----PLAFLLRKEGFEATV-V---TDGPAALAEFD-----RAGADIVLLDLMLPGMS-------- 62 (230)
T ss_dssp CCEEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---CSHHHHHHHHH-----HHCCSEEEEESSCSSSC--------
T ss_pred CCeEEEEeCCHHHHH----HHHHHHHHCCCEEEE-E---CCHHHHHHHHh-----ccCCCEEEEECCCCCCC--------
Confidence 367999999865331 122222 2333331 1 22334444443 24689999977654432
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 113 GILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
-.++++.+++. |.++|++++..
T Consensus 63 -g~~~~~~l~~~-~~~~ii~lt~~ 84 (230)
T 2oqr_A 63 -GTDVCKQLRAR-SSVPVIMVTAR 84 (230)
T ss_dssp -HHHHHHHHHHH-CSCSEEEEECC
T ss_pred -HHHHHHHHHcC-CCCCEEEEeCC
Confidence 13466777775 78999998864
No 187
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=32.11 E-value=32 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=31.5
Q ss_pred CCcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 90 KPKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
-|.+-.|++|+||+. ...+.+...+.+++..+++. +..+.++
T Consensus 188 ~~~vD~l~iG~~DLs~~lg~~~~~~~p~v~~a~~~iv~aaraa--G~~~gv~ 237 (287)
T 2v5j_A 188 VEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRES--GKAPGIL 237 (287)
T ss_dssp STTEEEEEECHHHHHHHTTSTTCCCSHHHHHHHHHHHHHHHHT--TSEEEEE
T ss_pred cCCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHc--CCeeEEe
Confidence 356778999999986 12356788889999999988 7766543
No 188
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=32.04 E-value=20 Score=26.11 Aligned_cols=79 Identities=10% Similarity=-0.023 Sum_probs=49.6
Q ss_pred hcCCCcEEEEccchhcccCcch--hHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC--C
Q psy1995 32 KESEPELVFIGDSLISFLTQTQ--IWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE--D 105 (211)
Q Consensus 32 ~~~~~~il~iGDS~t~g~~~~~--~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~--~ 105 (211)
+..+.-|+.+||.+..|-.+.. .....+ .+..+...++-.+....+.+.+.+ .+ ..+.|+||...|+-=.. .
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~-a~-~~~~DlVIttGGts~g~~D~ 106 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNT-AV-IGGVDLVVSVGGTGVTPRDV 106 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHH-HH-HTTCSEEEEESCCSSSTTCC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH-HH-hCCCCEEEECCCCCCCCccc
Confidence 3444678999999987642211 112222 256778888888888888877765 33 24789999987765222 4
Q ss_pred CHHHHHH
Q psy1995 106 SAENIAD 112 (211)
Q Consensus 106 ~~~~~~~ 112 (211)
+++.+.+
T Consensus 107 t~eal~~ 113 (185)
T 3rfq_A 107 TPESTRE 113 (185)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4554443
No 189
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=31.58 E-value=79 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=29.6
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
..||+|++.+..-|.. =.++++.+++..|..+||+++...
T Consensus 43 ~~~DlvllD~~mp~~d---------G~ell~~lr~~~~~~pvIvlT~~~ 82 (387)
T 1ny5_A 43 KHFNVVLLDLLLPDVN---------GLEILKWIKERSPETEVIVITGHG 82 (387)
T ss_dssp SCCSEEEEESBCSSSB---------HHHHHHHHHHHCTTSEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCC---------HHHHHHHHHhhCCCCcEEEEeCCC
Confidence 4789999977665532 135678888888999999998643
No 190
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=31.38 E-value=75 Score=19.66 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=40.7
Q ss_pred cEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy1995 37 ELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGI 114 (211)
Q Consensus 37 ~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~ 114 (211)
+|+++.|+-.... .+...+ .++.+.. . .+....+..+. ..+||+|++.+...+.. -
T Consensus 3 ~ilivdd~~~~~~----~l~~~l~~~~~~v~~-~---~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~--g------- 60 (120)
T 2a9o_A 3 KILIVDDEKPISD----IIKFNMTKEGYEVVT-A---FNGREALEQFE-----AEQPDIIILDLMLPEID--G------- 60 (120)
T ss_dssp EEEEECSCHHHHH----HHHHHHHHTTCEEEE-E---SSHHHHHHHHH-----HHCCSEEEECSSCSSSC--H-------
T ss_pred eEEEEcCCHHHHH----HHHHHHHhcCcEEEE-e---cCHHHHHHHHH-----hCCCCEEEEeccCCCCC--H-------
Confidence 6888988865331 122222 1333332 1 12234444443 24689999966544422 1
Q ss_pred HHHHHHHHhhCCCCeEEEEecc
Q psy1995 115 LELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 115 ~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.++++.+++. +..+|++++..
T Consensus 61 ~~~~~~l~~~-~~~~ii~~s~~ 81 (120)
T 2a9o_A 61 LEVAKTIRKT-SSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHH-CCCCEEEEESC
T ss_pred HHHHHHHHhC-CCCCEEEEecC
Confidence 2355666653 68888888763
No 191
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=30.57 E-value=1e+02 Score=19.80 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=44.6
Q ss_pred CcEEEEccchhcccCcchhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 36 PELVFIGDSLISFLTQTQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 36 ~~il~iGDS~t~g~~~~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
.+|+++.|+-.... .....+ .++.+.. .. +....+..+. ..+||+||+.+..-|..
T Consensus 4 ~~ILivdd~~~~~~----~l~~~L~~~g~~v~~-~~---~~~~al~~l~-----~~~~dlvi~D~~l~~~~--------- 61 (138)
T 3c3m_A 4 YTILVVDDSPMIVD----VFVTMLERGGYRPIT-AF---SGEECLEALN-----ATPPDLVLLDIMMEPMD--------- 61 (138)
T ss_dssp CEEEEECSCHHHHH----HHHHHHHHTTCEEEE-ES---SHHHHHHHHH-----HSCCSEEEEESCCSSSC---------
T ss_pred ceEEEEeCCHHHHH----HHHHHHHHcCceEEE-eC---CHHHHHHHHh-----ccCCCEEEEeCCCCCCC---------
Confidence 57899998865431 122222 2333332 11 2334444443 24689999977655432
Q ss_pred HHHHHHHHHhh--CCCCeEEEEeccC
Q psy1995 114 ILELIRLVQTK--QPQADVVVLELLP 137 (211)
Q Consensus 114 ~~~~i~~i~~~--~p~~~ii~~~~~p 137 (211)
-.++++.+++. .+.++|++++..+
T Consensus 62 g~~~~~~l~~~~~~~~~~ii~ls~~~ 87 (138)
T 3c3m_A 62 GWETLERIKTDPATRDIPVLMLTAKP 87 (138)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEEESSC
T ss_pred HHHHHHHHHcCcccCCCCEEEEECCC
Confidence 13466777764 3578899888653
No 192
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=29.45 E-value=86 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.......+.++++.+++.+|++-++.++.
T Consensus 125 ~~rni~i~~~i~~~i~~~~P~A~ii~~TN 153 (480)
T 1obb_A 125 NYNQLKYFVDIARKIEKLSPKAWYLQAAN 153 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34556778899999999999998877765
No 193
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=29.42 E-value=48 Score=23.78 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHhhcCCCCCCCCcEEEE-EeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCC
Q psy1995 79 WRVQDGILDSIKPKVIVI-LVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPR 138 (211)
Q Consensus 79 ~~~~~~~~~~~~pd~Vvi-~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 138 (211)
.++++ .....++|+|+- .-|+|+...-.....+.+..|...+...+++.+|.+++..-+
T Consensus 53 ~~f~~-Lv~~~n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~SGYRs 112 (170)
T 3n1g_B 53 ERFRD-LVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDE 112 (170)
T ss_dssp HHHHT-CEECCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEESSCC
T ss_pred Hhhhh-ccccCCCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEecccC
Confidence 34444 223679999998 455777665556677788888888888888999999987543
No 194
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=29.24 E-value=1.1e+02 Score=24.52 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=42.7
Q ss_pred CchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 71 GDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTE----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 71 G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..++.+++.|-..... ...-..|....||.-+. .+.+++.+.|++-++.+++. +.++|+|..
T Consensus 93 W~~a~ELIrRs~aeA~-~~pg~~ia~G~GTDqL~~~~~~~l~~V~~AY~EQ~~~Ve~~--G~~~ILMAS 158 (396)
T 4dnh_A 93 WPEARELIRRSLAEAR-GRPDALIACGAGTDHLAPGPDVSIDDILAAYESQIEAIEAE--GGRIILMAS 158 (396)
T ss_dssp HHHHHHHHHHHHHHHH-TSSSCCEEEEECCTTSCCCTTCCHHHHHHHHHHHHHHHHHT--TCCEEECCC
T ss_pred cHHHHHHHHHHHHHHh-cCCCCeeeeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEehh
Confidence 3455667666543111 12234567778887654 47889999999999999988 889998864
No 195
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=29.11 E-value=57 Score=23.09 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=40.4
Q ss_pred CCcEEEEccchhcccCc-chhHHhhc--CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccC
Q psy1995 35 EPELVFIGDSLISFLTQ-TQIWHNLF--EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN 101 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~-~~~~~~~~--~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 101 (211)
+..|+.+||.+-.-... +....+.+ .+..+...++-++....+.+.+.. .+...+.|+||...|+-
T Consensus 12 ~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~-a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 12 RIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSA-WIASDDVQVVLITGGTG 80 (172)
T ss_dssp EEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHH-HHHSSSCCEEEEESCCS
T ss_pred EEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHH-HHhcCCCCEEEeCCCCC
Confidence 45688999994211110 01112222 256777888888888888877765 33223589999987764
No 196
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=28.97 E-value=1.3e+02 Score=23.42 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCC-CCHHHHH----HHHHHHHHHHHhhC-CCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENIA----DGILELIRLVQTKQ-PQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~~----~~~~~~i~~i~~~~-p~~~ii~~~~ 135 (211)
..+|+||...|..... .+..++. ..+..+++.+++.. |++++++.+.
T Consensus 79 ~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~sn 131 (327)
T 1y7t_A 79 KDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (327)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 3689999988876533 4444332 35677888888886 8888887764
No 197
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=27.60 E-value=1.5e+02 Score=23.17 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHH-H---HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAEN-I---ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~-~---~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|..... .+..+ + ...+.++++.+.+..|++.|++++.
T Consensus 66 ~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 4689999999986643 22222 2 2346778888888889988777654
No 198
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=27.02 E-value=1.2e+02 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEecc
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELL 136 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~ 136 (211)
.++|.||+.+..-+ ++...+-.++++.+|+..++.+||+++..
T Consensus 52 ~~~d~vilDi~lp~-----~~~~~~G~~ll~~iR~~~~~iPIi~lTa~ 94 (755)
T 2vyc_A 52 EAIDCLMFSYQMEH-----PDEHQNVRQLIGKLHERQQNVPVFLLGDR 94 (755)
T ss_dssp CCCSEEEEECCCCS-----HHHHHHHHHHHHHHHHHSTTCCEEEEECH
T ss_pred CCCcEEEEeCCCCc-----ccccccHHHHHHHHHHhCCCCCEEEEecC
Confidence 46999999876543 22233334789999999889999999874
No 199
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=26.97 E-value=1.5e+02 Score=24.03 Aligned_cols=47 Identities=4% Similarity=-0.009 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhh-CCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTK-QPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~-~p~~~ii~~~~ 135 (211)
...|+|||..|...-- .+-.+. .+-+..+...+.+. .|++.|++++.
T Consensus 107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 4678999988765432 333332 23566777778876 79998888875
No 200
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.04 E-value=1.2e+02 Score=20.52 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhCCCCCCCC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPK 168 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~~~~ 168 (211)
..+|++++.+-. +. ..++++.+.+. +++-+++.. .. +.+.+.+.|++ .+
T Consensus 69 ~~~Dlvii~vp~-------~~----v~~v~~~~~~~--g~~~i~i~~--~~------------~~~~l~~~a~~----~G 117 (145)
T 2duw_A 69 EKVDMVDVFRNS-------EA----AWGVAQEAIAI--GAKTLWLQL--GV------------INEQAAVLARE----AG 117 (145)
T ss_dssp SCCSEEECCSCS-------TH----HHHHHHHHHHH--TCCEEECCT--TC------------CCHHHHHHHHT----TT
T ss_pred CCCCEEEEEeCH-------HH----HHHHHHHHHHc--CCCEEEEcC--Ch------------HHHHHHHHHHH----cC
Confidence 478999997642 22 23344444445 555555542 11 14567777877 89
Q ss_pred eEEEeCC
Q psy1995 169 VHLIQHN 175 (211)
Q Consensus 169 v~~iD~~ 175 (211)
+.++-.+
T Consensus 118 i~~igpn 124 (145)
T 2duw_A 118 LSVVMDR 124 (145)
T ss_dssp CEEECSC
T ss_pred CEEEcCC
Confidence 9998433
No 201
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.86 E-value=1.7e+02 Score=20.30 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=41.7
Q ss_pred CCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhC-CCCeEEEEecc
Q psy1995 60 EPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQ-PQADVVVLELL 136 (211)
Q Consensus 60 ~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~-p~~~ii~~~~~ 136 (211)
.++.++..|.. .....+.+... ..+||+|.++.-.- .....+.++++.+++.. ++++|++=+.+
T Consensus 45 ~G~eVi~lG~~-~p~e~lv~aa~-----~~~~diV~lS~~~~-------~~~~~~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 45 AGFEVVYTGLR-QTPEQVAMAAV-----QEDVDVIGVSILNG-------AHLHLMKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp TTCEEECCCSB-CCHHHHHHHHH-----HTTCSEEEEEESSS-------CHHHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred CCCEEEECCCC-CCHHHHHHHHH-----hcCCCEEEEEeech-------hhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 46778877654 34455555543 46899999875321 24556778888888875 36777776653
No 202
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=25.73 E-value=88 Score=25.07 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
.+||+|++.+..-|.. =.++++.+++..|..+||+++...
T Consensus 43 ~~~DlvllDi~mP~~d---------G~ell~~lr~~~~~~pvI~lT~~~ 82 (368)
T 3dzd_A 43 LFFPVIVLDVWMPDGD---------GVNFIDFIKENSPDSVVIVITGHG 82 (368)
T ss_dssp BCCSEEEEESEETTEE---------TTTHHHHHHHHCTTCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCC---------HHHHHHHHHhhCCCCeEEEEeCCC
Confidence 4689999865433321 023778888888999999998743
No 203
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=25.28 E-value=39 Score=27.13 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEeccC----CCC----CCHHHHHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 87 DSIKPKVIVILVGTN----NTE----DSAENIADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 87 ~~~~pd~Vvi~~G~N----D~~----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
..++||+||+..|.. |-. .+++.|.. +.+.+++. +.+++++
T Consensus 270 ~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~----~~~~l~~~--~~~~v~v 318 (341)
T 3q9b_A 270 AAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYIT----MGRTIAAS--GVPLLVV 318 (341)
T ss_dssp HHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHH----HHHHHHTT--SSCEEEE
T ss_pred HhhCCCEEEEeCCccccCCCCCCCccCCHHHHHH----HHHHHHHh--CCCEEEE
Confidence 368999999999974 211 45666554 56666665 4444443
No 204
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=25.11 E-value=37 Score=26.07 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=30.1
Q ss_pred CcEEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHhhCCCCeEEEE
Q psy1995 91 PKVIVILVGTNNTE--------DSAENIADGILELIRLVQTKQPQADVVVL 133 (211)
Q Consensus 91 pd~Vvi~~G~ND~~--------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 133 (211)
|.+-.|++|+||+. ...+.+...+.+++..+++. +..+.++
T Consensus 168 ~gvd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aa--G~~~~v~ 216 (267)
T 2vws_A 168 EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAA--GKAAGFL 216 (267)
T ss_dssp TTCCEEEECHHHHHHHTTCSSSCCTHHHHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh--CCeEEEe
Confidence 44667889999986 12356888889999999988 7666543
No 205
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=25.10 E-value=1.7e+02 Score=23.35 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCcEEEEEeccCCCC-CCHHHH----HHHHHHHHHHHHhh-CCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DSAENI----ADGILELIRLVQTK-QPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~~~~~----~~~~~~~i~~i~~~-~p~~~ii~~~~ 135 (211)
...|+|||..|..--- .+-+++ .+-++++.+.+.+. +|++.|++++.
T Consensus 99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 4688999988876433 444443 23556677777775 58898888775
No 206
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=25.05 E-value=1.2e+02 Score=23.44 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=28.3
Q ss_pred CCCcEEEEEeccCCCC-----CCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-----DSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|..-.. .....-..-+.++++.+.+..|++.+++.+.
T Consensus 66 ~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 66 ADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp TTCSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4679999988764321 1122334456778888888889998777654
No 207
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=24.86 E-value=1.2e+02 Score=25.47 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCCCCeEEEEec
Q psy1995 113 GILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
-+.++++.+++.+|++-++..+.
T Consensus 138 v~~~i~~~i~~~~P~A~~in~tN 160 (477)
T 3u95_A 138 LALEIAEKMKKMAPKAYLMQTAN 160 (477)
T ss_dssp HHHHHHHHHHHHCTTCEEEECSS
T ss_pred HHHHHHHHHHhhCCCeEEEEecC
Confidence 45788999999999998887775
No 208
>1g66_A Acetyl xylan esterase II; serine hydrolase, acetyl xylopyranose, hydrolase; 0.90A {Penicillium purpurogenum} SCOP: c.69.1.30 PDB: 1bs9_A 2axe_A*
Probab=24.55 E-value=82 Score=23.09 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+=..++.++|+...+++|+.+|+|.+.
T Consensus 62 ~~G~~~~~~~i~~~~~~CP~tkivl~GY 89 (207)
T 1g66_A 62 AQGIAAVASAVNSFNSQCPSTKIVLVGY 89 (207)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEee
Confidence 3344566777788888999999999885
No 209
>1qoz_A AXE, acetyl xylan esterase; hydrolase, xylan degradation; HET: NAG; 1.90A {Trichoderma reesei} SCOP: c.69.1.30
Probab=24.48 E-value=82 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 111 ADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 111 ~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
..++.+.|+...+++|+.+|+|.+.
T Consensus 65 ~~~~~~~i~~~~~~CP~tkivl~GY 89 (207)
T 1qoz_A 65 TNAAAAAINNFHNSCPDTQLVLVGY 89 (207)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 3456677777788999999999885
No 210
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=24.14 E-value=80 Score=18.21 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCe
Q psy1995 109 NIADGILELIRLVQTKQPQAD 129 (211)
Q Consensus 109 ~~~~~~~~~i~~i~~~~p~~~ 129 (211)
.+...+..+++.+++.||..+
T Consensus 12 ~~~sql~~Mve~V~~mFPqv~ 32 (58)
T 4g3o_A 12 YFQGQLNAMAHQIQEMFPQVP 32 (58)
T ss_dssp HHHHHHHHHHHHHHHHCTTSC
T ss_pred hhhHHHHHHHHHHHHHcCCCC
Confidence 356789999999999998873
No 211
>2czq_A Cutinase-like protein; alpha/beta hydrolase fold, hydrolase; HET: CIT; 1.05A {Cryptococcus SP}
Probab=24.08 E-value=87 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 108 ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 108 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+=..++.++|+...+++|+.+|++++.
T Consensus 57 ~~G~~~~~~~i~~~~~~CP~tkivl~GY 84 (205)
T 2czq_A 57 AAGTADIIRRINSGLAANPNVCYILQGY 84 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 5556677888888888999999999986
No 212
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=23.57 E-value=1.8e+02 Score=20.62 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=31.7
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|.+|+.+-.+| .+.+...+..++..++...++.+++++..
T Consensus 97 ~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~n 139 (214)
T 3q3j_B 97 SDSDAVLLCFDISR----PETVDSALKKWRTEILDYCPSTRVLLIGC 139 (214)
T ss_dssp TTCSEEEEEEETTC----THHHHHHHTHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCeEEEEEEECcC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 36788888887766 34555546777888888888899888865
No 213
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=23.37 E-value=14 Score=23.58 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|+-... ..+...+. ++.+... .+....+..+. ...||+|++.+...+. +
T Consensus 3 ~~~ilivdd~~~~~----~~l~~~l~~~~~~v~~~----~~~~~~~~~~~-----~~~~dlvi~d~~~~~~----~---- 61 (124)
T 1dc7_A 3 RGIVWVVDDDSSIR----WVLERALAGAGLTCTTF----ENGNEVLAALA-----SKTPDVLLSDIRMPGM----D---- 61 (124)
T ss_dssp CCCCEEECSSSSHH----HHHHHHHTTTTCCCEEC----CCTTHHHHHSS-----SCCCSCEEECSCSSHH----H----
T ss_pred ccEEEEEeCCHHHH----HHHHHHHHhCCcEEEEe----CCHHHHHHHHh-----cCCCCEEEEeeecCCC----C----
Confidence 45788888875432 11233332 2333211 12233443332 3579999985533221 1
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 113 GILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 113 ~~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
-.++++.+++..|..+|++++...
T Consensus 62 -g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1dc7_A 62 -GLALLKQIKQRHPMLPVIIMTAHS 85 (124)
T ss_dssp -HCSTHHHHHHHCTTSCCCCBCCST
T ss_pred -HHHHHHHHHhhCCCCCEEEEecCC
Confidence 123577777788899999887643
No 214
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=23.13 E-value=42 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=29.3
Q ss_pred CcEEEEEeccCCCC----C----CHHHHHHHHHHHHHHHHhhCCCCeEEE
Q psy1995 91 PKVIVILVGTNNTE----D----SAENIADGILELIRLVQTKQPQADVVV 132 (211)
Q Consensus 91 pd~Vvi~~G~ND~~----~----~~~~~~~~~~~~i~~i~~~~p~~~ii~ 132 (211)
|.+-.+++|+||+. . ..+.+...+.+++..+++. +..+.+
T Consensus 168 ~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a~--G~~~~v 215 (256)
T 1dxe_A 168 EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAH--GKPSGI 215 (256)
T ss_dssp TTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHT--TCCEEE
T ss_pred CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh--CCceEE
Confidence 45667889999986 1 2246778889999999988 666544
No 215
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=23.04 E-value=80 Score=24.61 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCCcEEEEEeccCCCC-CC-H---HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-DS-A---ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~~-~---~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|+.--. .+ . ..-..-+.++.+.+.+..|++.|++.+.
T Consensus 69 ~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 69 ANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp TTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 4679999999876432 11 1 2223456778888888889998777665
No 216
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=22.99 E-value=1.4e+02 Score=27.21 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCcEEEEEeccCCCC------CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCC
Q psy1995 89 IKPKVIVILVGTNNTE------DSAENIADGILELIRLVQTKQPQADVVVLELLPRGK 140 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~------~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~ 140 (211)
.+.|+||+.+|.|... .+.=.+-..-.++|+.+.+.+|.+-|++.+.-|...
T Consensus 572 ~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~tVVVl~sG~pv~m 629 (845)
T 3abz_A 572 AKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEF 629 (845)
T ss_dssp HTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEEEECSSCCCC
T ss_pred hcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCCEEEEEeCCCcccC
Confidence 4789999999988432 000001123367889999998888777777666554
No 217
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=22.94 E-value=1.3e+02 Score=23.69 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCC-C-----CH----HHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-D-----SA----ENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-~-----~~----~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|+---. . +. ..-..-+.++.+.+.+..|++.+++.+.
T Consensus 77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 133 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 133 (331)
T ss_dssp TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 3679999999765321 1 21 1223457888999999899998877665
No 218
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=22.88 E-value=1.6e+02 Score=18.90 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=42.8
Q ss_pred CCcEEEEccchhcccCcchhHHhhcCC--cceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHH
Q psy1995 35 EPELVFIGDSLISFLTQTQIWHNLFEP--LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIAD 112 (211)
Q Consensus 35 ~~~il~iGDS~t~g~~~~~~~~~~~~~--~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~ 112 (211)
..+|+++.|.-... ......+.. ..+... .+....+..+. ..+||+|++.+..-+.. -
T Consensus 10 ~~~iLivdd~~~~~----~~l~~~L~~~~~~v~~~----~~~~~al~~l~-----~~~~dlvllD~~lp~~~--g----- 69 (140)
T 3c97_A 10 PLSVLIAEDNDICR----LVAAKALEKCTNDITVV----TNGLQALQAYQ-----NRQFDVIIMDIQMPVMD--G----- 69 (140)
T ss_dssp CCEEEEECCCHHHH----HHHHHHHTTTCSEEEEE----SSHHHHHHHHH-----HSCCSEEEECTTCCSSC--H-----
T ss_pred CceEEEEcCCHHHH----HHHHHHHHHcCCceEEE----CCHHHHHHHHh-----cCCCCEEEEeCCCCCCc--H-----
Confidence 45899999986543 122333322 222221 23344444443 24689999965443321 1
Q ss_pred HHHHHHHHHHhh-----CCCCeEEEEecc
Q psy1995 113 GILELIRLVQTK-----QPQADVVVLELL 136 (211)
Q Consensus 113 ~~~~~i~~i~~~-----~p~~~ii~~~~~ 136 (211)
.++++.+++. .|...|++++..
T Consensus 70 --~~~~~~l~~~~~~~~~~~~~ii~~s~~ 96 (140)
T 3c97_A 70 --LEAVSEIRNYERTHNTKRASIIAITAD 96 (140)
T ss_dssp --HHHHHHHHHHHHHHTCCCCCCEEEESS
T ss_pred --HHHHHHHHhhhhhcCCCceEEEEEeCc
Confidence 2345555542 467888888754
No 219
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=22.79 E-value=70 Score=23.01 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=12.3
Q ss_pred CCCCcEEEEEeccCCCC
Q psy1995 88 SIKPKVIVILVGTNNTE 104 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~ 104 (211)
..+|.+.||+.|+.|..
T Consensus 5 ~~~~~V~IimgS~SD~~ 21 (174)
T 3lp6_A 5 GERPRVGVIMGSDSDWP 21 (174)
T ss_dssp -CCCSEEEEESCGGGHH
T ss_pred CCCCeEEEEECcHHhHH
Confidence 45677888888888853
No 220
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.59 E-value=1e+02 Score=22.88 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADG 113 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~ 113 (211)
...+|+++.|+-.........+... ++.+. ...+| ...+..+.. ..||+|++.+..-+..
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~--g~~v~-~a~~~---~eal~~l~~-----~~~dlvl~D~~mp~~~--------- 187 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSL--GYQCK-TANDG---VDALNVLSK-----NHIDIVLSDVNMPNMD--------- 187 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHH--TSEEE-EECCS---HHHHHHHHH-----SCCSEEEEEESSCSSC---------
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHc--CCEEE-EECCH---HHHHHHHHh-----CCCCEEEEcCCCCCCC---------
Confidence 3467999999876432111111111 33333 22233 334444432 4689999987654432
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccC
Q psy1995 114 ILELIRLVQTKQPQADVVVLELLP 137 (211)
Q Consensus 114 ~~~~i~~i~~~~p~~~ii~~~~~p 137 (211)
=.++++.+++..|..+||+++...
T Consensus 188 G~~l~~~ir~~~~~~piI~lt~~~ 211 (254)
T 2ayx_A 188 GYRLTQRIRQLGLTLPVIGVTANA 211 (254)
T ss_dssp CHHHHHHHHHHHCCSCEEEEESST
T ss_pred HHHHHHHHHhcCCCCcEEEEECCC
Confidence 134677777777889999998743
No 221
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=22.53 E-value=56 Score=24.98 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=31.3
Q ss_pred CcEEEEEeccCCCC------CC--HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 91 PKVIVILVGTNNTE------DS--AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 91 pd~Vvi~~G~ND~~------~~--~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+.+-.+++|+||+. .+ .+.+...+.+++..+++. +..+-++..
T Consensus 166 ~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aa--G~~~g~~~~ 216 (261)
T 3qz6_A 166 QGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQ--GVVKGFFTA 216 (261)
T ss_dssp TTCCEEEECHHHHHHHTTCTTCTTCHHHHHHHHHHHHHHHHH--TCEEEEEES
T ss_pred CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEeC
Confidence 34567788999986 12 246788889999999998 777665544
No 222
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=22.33 E-value=1.9e+02 Score=22.16 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=32.8
Q ss_pred CCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Q psy1995 89 IKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQPQADVVVLE 134 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 134 (211)
..|.+|.+.+ .|.-. .+.+.+...++++++.||+..|+..|++-+
T Consensus 132 ~~~~vv~~~l-~NEP~~~~~~~~~~~~~~~~~~~IR~~dp~~~i~v~~ 178 (320)
T 3nco_A 132 DYPDKLFFEI-FNEPAQNLTPTKWNELYPKVLGEIRKTNPSRIVIIDV 178 (320)
T ss_dssp TSCTTEEEEC-CSCCCTTSCHHHHHHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred CCCceEEEEe-ccCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 4566665554 46554 456788889999999999999888776643
No 223
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=22.08 E-value=54 Score=23.56 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.0
Q ss_pred CCCCcEEEEEeccCCCC
Q psy1995 88 SIKPKVIVILVGTNNTE 104 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~ 104 (211)
...|.+.||+.|+.|..
T Consensus 10 ~~~P~V~IimGS~SD~~ 26 (173)
T 4grd_A 10 HSAPLVGVLMGSSSDWD 26 (173)
T ss_dssp CSSCSEEEEESSGGGHH
T ss_pred CCCCeEEEEeCcHhHHH
Confidence 56789999999999963
No 224
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=21.95 E-value=88 Score=24.97 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCCcEEEEccchhcccCcchhHHhhcC--CcceEEeccCCchhHHHHHHhhcCCCCCCCCcEEEEEeccCCCCCCHHHHH
Q psy1995 34 SEPELVFIGDSLISFLTQTQIWHNLFE--PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIA 111 (211)
Q Consensus 34 ~~~~il~iGDS~t~g~~~~~~~~~~~~--~~~~~n~g~~G~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~ 111 (211)
...+|+++-|+-.... .+...+. ++.+. .. .+....++.+. ..+||+|++.+..-+..
T Consensus 4 ~~~~iLivdD~~~~~~----~l~~~L~~~g~~v~-~a---~~~~~al~~~~-----~~~~dlvllD~~mp~~~------- 63 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRE----SLAAYLEDSNFKVL-QA---LNGLQGLQIFE-----SEQPDLVICDLRMPQID------- 63 (394)
T ss_dssp CEEEEEEECSCHHHHH----HHHHHHHHTTEEEE-EC---SSHHHHHHHHH-----HSCCSEEEECCCSSSSC-------
T ss_pred CCCEEEEEeCCHHHHH----HHHHHHHhCCCEEE-EE---CCHHHHHHHHh-----hCCCCEEEEcCCCCCCC-------
Confidence 3467999999865432 1222222 23332 22 23344455443 25699999965433321
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 112 DGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 112 ~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
=.++++.+++..|..+||+++.
T Consensus 64 --G~~~~~~lr~~~~~~pii~lt~ 85 (394)
T 3eq2_A 64 --GLELIRRIRQTASETPIIVLSG 85 (394)
T ss_dssp --THHHHHHHHHTTCCCCEEEC--
T ss_pred --HHHHHHHHHhhCCCCcEEEEEc
Confidence 1356778888888999999885
No 225
>3qpa_A Cutinase; alpha-beta hydrolase fold, esterase, hydrolase, mono- phosphorylated serine residue, secreted; HET: MIR; 0.85A {Nectria haematococca} PDB: 3qpc_A* 1cex_A 1oxm_A* 1cui_A 1cus_A 2cut_A 1cuj_A 1cuy_A 1xzl_A* 1xzk_A* 1xzm_A* 1cuh_A 1cuu_A 3esc_A* 1cua_A* 3esa_A* 3esb_A* 3ef3_A* 3esd_A* 1cux_A ...
Probab=21.67 E-value=1.2e+02 Score=22.21 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 106 SAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 106 ~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+..+=...+.++|+...+++|+.+|++++.
T Consensus 75 S~~~G~~~~~~~i~~~~~~CP~tkiVL~GY 104 (197)
T 3qpa_A 75 TSSAAIREMLGLFQQANTKCPDATLIAGGY 104 (197)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 344556677888888889999999999986
No 226
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.66 E-value=41 Score=24.09 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=12.8
Q ss_pred CCCCcEEEEEeccCCCC
Q psy1995 88 SIKPKVIVILVGTNNTE 104 (211)
Q Consensus 88 ~~~pd~Vvi~~G~ND~~ 104 (211)
..+|.+.||+.|+.|..
T Consensus 9 ~~~~~V~IimGS~SD~~ 25 (170)
T 1xmp_A 9 HMKSLVGVIMGSTSDWE 25 (170)
T ss_dssp --CCSEEEEESSGGGHH
T ss_pred cCCCcEEEEECcHHHHH
Confidence 46889999999999863
No 227
>3dcn_A Cutinase, cutin hydrolase; catalytic triad, secreted, serine esterase; 1.90A {Glomerella cingulata} SCOP: c.69.1.0 PDB: 3dd5_A 3dea_A*
Probab=21.39 E-value=1.1e+02 Score=22.53 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 106 SAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 106 ~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+..+=...+.++|+...+++|+.+|++.+.
T Consensus 83 S~~~G~~~~~~~i~~~~~~CP~tkiVL~GY 112 (201)
T 3dcn_A 83 TSSAAINEARRLFTLANTKCPNAAIVSGGY 112 (201)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcEEEEee
Confidence 344555677888888889999999999986
No 228
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=21.33 E-value=1.8e+02 Score=21.97 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=20.0
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE
Q psy1995 92 KVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVV 132 (211)
Q Consensus 92 d~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~ 132 (211)
-++++..|+-| ++.....+..+.+.+++.+|+..|.+
T Consensus 4 aillv~hGSr~----~~~~~~~~~~~~~~v~~~~p~~~V~~ 40 (264)
T 2xwp_A 4 ALLVVSFGTSY----HDTCEKNIVACERDLAASCPDRDLFR 40 (264)
T ss_dssp EEEEEECCCSC----HHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred eEEEEECCCCC----HHHHHHHHHHHHHHHHHHCCCCeEEe
Confidence 35666666644 22222256666666666666655443
No 229
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=21.20 E-value=2e+02 Score=24.04 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCcEEEEEeccCCCC-----------------CC--------HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTE-----------------DS--------AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~-----------------~~--------~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|+.-.. .| .......+.++++.+++.+|++-++.++.
T Consensus 101 ~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TN 172 (472)
T 1u8x_X 101 TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN 172 (472)
T ss_dssp SSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3578999999874211 01 12233567899999999999998887765
No 230
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=21.18 E-value=2.1e+02 Score=19.77 Aligned_cols=43 Identities=5% Similarity=0.077 Sum_probs=29.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 90 KPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 90 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
+.|.+|+.+-.+|. ..+....+...+..++...++.+++++..
T Consensus 95 ~~~~~i~v~d~~~~---~~~~~~~~~~~l~~~~~~~~~~piilv~n 137 (196)
T 3llu_A 95 GTGALIYVIDAQDD---YMEALTRLHITVSKAYKVNPDMNFEVFIH 137 (196)
T ss_dssp TCSEEEEEEETTSC---CHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred cCCEEEEEEECCCc---hHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 46888888877764 23344445566777666778999988875
No 231
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=21.05 E-value=28 Score=17.18 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=13.9
Q ss_pred HHHHHHHhhcCCCcEEEEcc
Q psy1995 24 HEHQLQLAKESEPELVFIGD 43 (211)
Q Consensus 24 ~~~~~~~~~~~~~~il~iGD 43 (211)
..+.....+...+++.|.||
T Consensus 17 lkklkeeakkanirvtfwgd 36 (36)
T 2ki0_A 17 LKKLKEEAKKANIRVTFWGD 36 (36)
T ss_dssp HHHHHHHHHHHCCCCCBCCC
T ss_pred HHHHHHHHHhccEEEEeecC
Confidence 34444556677889999887
No 232
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=20.83 E-value=2e+02 Score=22.39 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=31.3
Q ss_pred CCCcEEEEEeccCCCCCCHH----HHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 89 IKPKVIVILVGTNNTEDSAE----NIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 89 ~~pd~Vvi~~G~ND~~~~~~----~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
...|+||+.+|.-.-+.+-. +-..-+.++++.+.+..|++.+++.+.
T Consensus 76 ~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 76 AHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp TTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 46899999998842112222 223347888888888889998877665
No 233
>3qpd_A Cutinase 1; alpha-beta hydrolase fold, esterase, hydrolase, mono- phosphorylated serine residue, secreted, phosphorylated Ser residue; HET: SEP; 1.57A {Aspergillus oryzae} PDB: 3gbs_A
Probab=20.71 E-value=1.3e+02 Score=21.79 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEec
Q psy1995 107 AENIADGILELIRLVQTKQPQADVVVLEL 135 (211)
Q Consensus 107 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 135 (211)
.+.-...+.++++...+++|+.+|++++.
T Consensus 72 ~~~g~~~~~~~i~~~~~~CP~tkivl~GY 100 (187)
T 3qpd_A 72 SQAAIAEAQGLFEQAVSKCPDTQIVAGGY 100 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCCCcEEEEee
Confidence 34556667788888889999999999986
Done!